Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506420 | AES70782.2 | 67.052 | 173 | 50 | 1 | 396 | 561 | 1777 | 1949 | 2.81e-58 | 223 |
| Msa0506420 | AES70782.2 | 84.887 | 397 | 52 | 2 | 1 | 396 | 1069 | 1458 | 0.0 | 684 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506420 | G7IV31 | 67.052 | 173 | 50 | 1 | 396 | 561 | 1777 | 1949 | 1.34e-58 | 223 |
| Msa0506420 | G7IV31 | 84.887 | 397 | 52 | 2 | 1 | 396 | 1069 | 1458 | 0.0 | 684 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0476110 | Msa0506420 | 0.806487 | 8.033063e-50 | -8.615850e-47 |
| Msa0506420 | Msa0506450 | 0.910205 | 2.431203e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506420 | MtrunA17_Chr3g0108171 | 84.887 | 397 | 52 | 2 | 1 | 396 | 1087 | 1476 | 0.0 | 683 |
| Msa0506420 | MtrunA17_Chr3g0108171 | 67.052 | 173 | 50 | 1 | 396 | 561 | 1795 | 1967 | 2.67e-62 | 223 |
| Msa0506420 | MtrunA17_Chr3g0108151 | 56.613 | 620 | 144 | 12 | 1 | 561 | 990 | 1543 | 0.0 | 592 |
| Msa0506420 | MtrunA17_Chr3g0108811 | 60.304 | 461 | 93 | 8 | 1 | 395 | 1237 | 1673 | 8.97e-161 | 503 |
| Msa0506420 | MtrunA17_Chr3g0108811 | 45.455 | 550 | 238 | 19 | 55 | 561 | 1400 | 1930 | 3.47e-106 | 350 |
| Msa0506420 | MtrunA17_Chr3g0108111 | 69.149 | 282 | 81 | 5 | 116 | 395 | 220 | 497 | 3.19e-126 | 383 |
| Msa0506420 | MtrunA17_Chr3g0108111 | 76.364 | 165 | 39 | 0 | 1 | 165 | 168 | 332 | 2.51e-72 | 243 |
| Msa0506420 | MtrunA17_Chr3g0108821 | 53.731 | 402 | 91 | 8 | 1 | 395 | 1216 | 1529 | 1.78e-110 | 362 |
| Msa0506420 | MtrunA17_Chr3g0107931 | 50.868 | 403 | 113 | 8 | 1 | 395 | 1245 | 1570 | 5.05e-102 | 338 |
| Msa0506420 | MtrunA17_Chr3g0107931 | 63.953 | 172 | 55 | 1 | 397 | 561 | 1716 | 1887 | 1.63e-57 | 208 |
| Msa0506420 | MtrunA17_Chr3g0091861 | 48.395 | 405 | 125 | 7 | 4 | 395 | 1169 | 1502 | 2.68e-96 | 322 |
| Msa0506420 | MtrunA17_Chr3g0091861 | 64.375 | 160 | 43 | 1 | 394 | 553 | 1713 | 1858 | 6.59e-53 | 195 |
| Msa0506420 | MtrunA17_Chr3g0108011 | 60.726 | 303 | 90 | 7 | 106 | 395 | 1280 | 1566 | 7.33e-95 | 317 |
| Msa0506420 | MtrunA17_Chr3g0105471 | 79.042 | 167 | 35 | 0 | 395 | 561 | 80 | 246 | 1.84e-86 | 268 |
| Msa0506420 | MtrunA17_Chr7g0223911 | 93.939 | 132 | 8 | 0 | 430 | 561 | 29 | 160 | 5.67e-83 | 256 |
| Msa0506420 | MtrunA17_Chr3g0108071 | 46.995 | 366 | 100 | 9 | 1 | 354 | 367 | 650 | 1.81e-79 | 269 |
| Msa0506420 | MtrunA17_Chr3g0108071 | 68.056 | 144 | 32 | 1 | 395 | 538 | 832 | 961 | 2.46e-53 | 195 |
| Msa0506420 | MtrunA17_Chr3g0107271 | 50.690 | 290 | 74 | 6 | 1 | 290 | 23 | 243 | 6.51e-78 | 246 |
| Msa0506420 | MtrunA17_Chr3g0105591 | 72.989 | 174 | 40 | 1 | 395 | 561 | 262 | 435 | 3.19e-77 | 250 |
| Msa0506420 | MtrunA17_Chr3g0105591 | 39.655 | 116 | 36 | 3 | 289 | 397 | 15 | 103 | 1.93e-12 | 69.3 |
| Msa0506420 | MtrunA17_Chr2g0304131 | 69.767 | 172 | 45 | 1 | 397 | 561 | 144 | 315 | 8.16e-73 | 235 |
| Msa0506420 | MtrunA17_Chr3g0107261 | 67.052 | 173 | 50 | 1 | 396 | 561 | 227 | 399 | 1.50e-70 | 232 |
| Msa0506420 | MtrunA17_Chr3g0105551 | 71.264 | 174 | 43 | 1 | 395 | 561 | 1691 | 1864 | 1.17e-69 | 244 |
| Msa0506420 | MtrunA17_Chr3g0105551 | 35.333 | 450 | 157 | 13 | 15 | 395 | 1141 | 1525 | 2.24e-56 | 205 |
| Msa0506420 | MtrunA17_Chr3g0105551 | 32.955 | 176 | 94 | 5 | 79 | 246 | 786 | 945 | 1.25e-13 | 74.3 |
| Msa0506420 | MtrunA17_Chr3g0108761 | 66.860 | 172 | 36 | 2 | 397 | 561 | 23 | 180 | 3.00e-68 | 218 |
| Msa0506420 | MtrunA17_Chr3g0105521 | 73.939 | 165 | 38 | 1 | 397 | 561 | 1446 | 1605 | 1.14e-67 | 238 |
| Msa0506420 | MtrunA17_Chr3g0105521 | 32.244 | 459 | 201 | 14 | 26 | 408 | 912 | 1336 | 2.28e-52 | 193 |
| Msa0506420 | MtrunA17_Chr3g0105521 | 25.882 | 255 | 127 | 7 | 43 | 272 | 658 | 875 | 1.59e-12 | 70.9 |
| Msa0506420 | MtrunA17_Chr3g0105521 | 29.493 | 217 | 125 | 6 | 52 | 243 | 911 | 1124 | 4.04e-11 | 66.2 |
| Msa0506420 | MtrunA17_Chr3g0105601 | 43.333 | 330 | 99 | 6 | 15 | 344 | 261 | 502 | 8.37e-66 | 222 |
| Msa0506420 | MtrunA17_Chr3g0107641 | 63.372 | 172 | 56 | 1 | 397 | 561 | 21 | 192 | 2.73e-63 | 206 |
| Msa0506420 | MtrunA17_Chr3g0091851 | 32.103 | 623 | 312 | 16 | 29 | 561 | 714 | 1315 | 3.11e-62 | 222 |
| Msa0506420 | MtrunA17_Chr3g0105481 | 39.529 | 382 | 148 | 11 | 13 | 343 | 952 | 1301 | 6.31e-62 | 221 |
| Msa0506420 | MtrunA17_Chr3g0105481 | 43.956 | 91 | 28 | 2 | 308 | 397 | 1446 | 1514 | 1.92e-12 | 70.5 |
| Msa0506420 | MtrunA17_Chr3g0105481 | 27.917 | 240 | 134 | 8 | 12 | 246 | 682 | 887 | 4.77e-12 | 69.3 |
| Msa0506420 | MtrunA17_Chr3g0097011 | 63.953 | 172 | 41 | 2 | 397 | 561 | 240 | 397 | 6.83e-62 | 209 |
| Msa0506420 | MtrunA17_Chr3g0097601 | 43.682 | 277 | 92 | 5 | 1 | 277 | 23 | 235 | 8.23e-59 | 196 |
| Msa0506420 | MtrunA17_Chr3g0096701 | 46.403 | 278 | 132 | 9 | 116 | 387 | 42 | 308 | 3.59e-58 | 207 |
| Msa0506420 | MtrunA17_Chr3g0107171 | 67.606 | 142 | 39 | 1 | 427 | 561 | 242 | 383 | 2.56e-56 | 194 |
| Msa0506420 | MtrunA17_Chr3g0108091 | 69.014 | 142 | 30 | 1 | 397 | 538 | 371 | 498 | 7.29e-56 | 196 |
| Msa0506420 | MtrunA17_Chr3g0108091 | 54.922 | 193 | 67 | 5 | 174 | 354 | 3 | 187 | 2.90e-53 | 189 |
| Msa0506420 | MtrunA17_Chr3g0107081 | 56.354 | 181 | 61 | 5 | 112 | 286 | 32 | 200 | 3.80e-54 | 182 |
| Msa0506420 | MtrunA17_Chr3g0107081 | 63.551 | 107 | 29 | 1 | 50 | 156 | 34 | 130 | 5.43e-33 | 125 |
| Msa0506420 | MtrunA17_Chr2g0288311 | 57.714 | 175 | 43 | 4 | 126 | 296 | 31 | 178 | 1.06e-48 | 167 |
| Msa0506420 | MtrunA17_Chr2g0288311 | 64.762 | 105 | 31 | 2 | 62 | 165 | 30 | 129 | 3.19e-30 | 116 |
| Msa0506420 | MtrunA17_Chr3g0096771 | 55.233 | 172 | 47 | 3 | 397 | 561 | 141 | 289 | 2.80e-48 | 169 |
| Msa0506420 | MtrunA17_Chr3g0105501 | 59.574 | 141 | 54 | 1 | 22 | 162 | 1 | 138 | 1.44e-46 | 162 |
| Msa0506420 | MtrunA17_Chr3g0105501 | 54.023 | 174 | 57 | 6 | 121 | 289 | 37 | 192 | 3.87e-46 | 161 |
| Msa0506420 | MtrunA17_Chr3g0087641 | 69.565 | 115 | 35 | 0 | 397 | 511 | 232 | 346 | 1.83e-46 | 166 |
| Msa0506420 | MtrunA17_Chr3g0096801 | 50.000 | 156 | 59 | 2 | 191 | 344 | 2 | 140 | 1.04e-36 | 133 |
| Msa0506420 | MtrunA17_Chr7g0229711 | 49.677 | 155 | 55 | 3 | 399 | 553 | 5 | 136 | 4.40e-35 | 129 |
| Msa0506420 | MtrunA17_Chr3g0107201 | 55.484 | 155 | 46 | 6 | 191 | 343 | 2 | 135 | 3.78e-32 | 131 |
| Msa0506420 | MtrunA17_Chr1g0160951 | 32.231 | 242 | 139 | 8 | 97 | 327 | 1051 | 1278 | 3.72e-28 | 120 |
| Msa0506420 | MtrunA17_Chr5g0439121 | 27.696 | 408 | 188 | 13 | 1 | 396 | 1298 | 1610 | 7.42e-26 | 113 |
| Msa0506420 | MtrunA17_Chr5g0439121 | 30.268 | 261 | 158 | 7 | 4 | 246 | 981 | 1235 | 1.86e-22 | 102 |
| Msa0506420 | MtrunA17_Chr3g0100241 | 36.702 | 188 | 98 | 7 | 97 | 269 | 22 | 203 | 4.67e-24 | 100 |
| Msa0506420 | MtrunA17_Chr3g0100241 | 37.838 | 148 | 84 | 4 | 18 | 160 | 6 | 150 | 4.75e-18 | 83.2 |
| Msa0506420 | MtrunA17_Chr3g0112521 | 61.972 | 71 | 27 | 0 | 483 | 553 | 6 | 76 | 4.75e-23 | 93.2 |
| Msa0506420 | MtrunA17_Chr3g0105491 | 63.014 | 73 | 20 | 1 | 496 | 561 | 1 | 73 | 1.92e-20 | 85.5 |
| Msa0506420 | MtrunA17_Chr8g0360991 | 33.962 | 159 | 94 | 4 | 116 | 269 | 1056 | 1208 | 1.77e-19 | 92.8 |
| Msa0506420 | MtrunA17_Chr8g0360991 | 33.333 | 117 | 73 | 1 | 44 | 160 | 1047 | 1158 | 1.39e-13 | 73.9 |
| Msa0506420 | MtrunA17_Chr3g0100261 | 36.585 | 164 | 90 | 4 | 116 | 269 | 1062 | 1221 | 1.84e-19 | 92.8 |
| Msa0506420 | MtrunA17_Chr5g0443761 | 32.258 | 186 | 123 | 3 | 2 | 186 | 872 | 1055 | 5.28e-18 | 88.2 |
| Msa0506420 | MtrunA17_Chr5g0443761 | 29.592 | 196 | 116 | 5 | 90 | 271 | 901 | 1088 | 3.68e-14 | 75.9 |
| Msa0506420 | MtrunA17_Chr3g0109131 | 51.648 | 91 | 33 | 2 | 478 | 561 | 86 | 172 | 6.33e-18 | 81.6 |
| Msa0506420 | MtrunA17_Chr2g0313591 | 33.198 | 247 | 130 | 10 | 50 | 269 | 829 | 1067 | 4.10e-16 | 82.4 |
| Msa0506420 | MtrunA17_Chr2g0313491 | 26.766 | 269 | 142 | 7 | 43 | 278 | 825 | 1071 | 1.24e-15 | 80.9 |
| Msa0506420 | MtrunA17_Chr3g0099591 | 30.085 | 236 | 145 | 8 | 26 | 247 | 1025 | 1254 | 2.32e-15 | 79.7 |
| Msa0506420 | MtrunA17_Chr3g0106021 | 56.923 | 65 | 28 | 0 | 1 | 65 | 323 | 387 | 2.32e-14 | 75.1 |
| Msa0506420 | MtrunA17_Chr3g0107211 | 27.049 | 244 | 160 | 8 | 12 | 246 | 794 | 1028 | 6.31e-14 | 75.1 |
| Msa0506420 | MtrunA17_Chr2g0313461 | 28.682 | 258 | 137 | 10 | 43 | 269 | 825 | 1066 | 1.60e-13 | 73.9 |
| Msa0506420 | MtrunA17_Chr2g0313311 | 30.043 | 233 | 147 | 6 | 43 | 269 | 825 | 1047 | 1.16e-12 | 71.2 |
| Msa0506420 | MtrunA17_Chr3g0107181 | 26.009 | 223 | 129 | 6 | 49 | 244 | 722 | 935 | 4.64e-12 | 68.9 |
| Msa0506420 | MtrunA17_Chr2g0313351 | 30.052 | 193 | 123 | 4 | 43 | 233 | 829 | 1011 | 8.46e-12 | 68.6 |
| Msa0506420 | MtrunA17_Chr2g0314301 | 28.112 | 249 | 124 | 8 | 43 | 250 | 822 | 1056 | 2.00e-11 | 67.4 |
| Msa0506420 | MtrunA17_Chr3g0106011 | 28.804 | 184 | 89 | 4 | 40 | 182 | 7 | 189 | 2.81e-11 | 64.3 |
| Msa0506420 | MtrunA17_Chr2g0313331 | 27.917 | 240 | 130 | 8 | 43 | 253 | 507 | 732 | 4.29e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 77 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATTTCTGTTTCAGATTT+TGG | 0.117188 | 3_4:+52781409 | Msa0506420:CDS |
| AGCTCTTTACATATGGAAAT+TGG | 0.229986 | 3_4:-52780965 | None:intergenic |
| TTCCTTGGTAACCTGCTTCT+TGG | 0.246085 | 3_4:-52782806 | None:intergenic |
| AATGCTACAAATTTCAGATT+TGG | 0.256119 | 3_4:-52781268 | None:intergenic |
| CTCATAATCCAAATGATTCT+TGG | 0.276110 | 3_4:-52782488 | None:intergenic |
| GCATATTATTGAAGATGATT+TGG | 0.296423 | 3_4:+52781033 | Msa0506420:CDS |
| TTGGAGGGAGAACGAATCTT+TGG | 0.296720 | 3_4:-52780702 | None:intergenic |
| TTTGTTGGTATTTCTAAATC+AGG | 0.310925 | 3_4:-52782115 | None:intergenic |
| TCTTGAGATATTTGTATATC+AGG | 0.318289 | 3_4:-52782760 | None:intergenic |
| AAGAGAAGCAGATGAGTTAG+AGG | 0.331520 | 3_4:+52781204 | Msa0506420:CDS |
| ATTGTTCAAAACAGCTTTAG+AGG | 0.335517 | 3_4:-52782899 | None:intergenic |
| GCATATCATTGAAGATGATT+TGG | 0.339544 | 3_4:+52780844 | Msa0506420:CDS |
| TCTTTCGTGGTTTGTGGACT+AGG | 0.349515 | 3_4:-52781864 | None:intergenic |
| CTCAGGAAGCTCTTTACATA+TGG | 0.356714 | 3_4:-52781164 | None:intergenic |
| CATAGTGTCTTGGATGTATT+AGG | 0.356946 | 3_4:+52782640 | Msa0506420:CDS |
| AATCTTTGGGACCCACAAAA+AGG | 0.367939 | 3_4:-52780688 | None:intergenic |
| ATTCGGAATTGTTTGACTAT+TGG | 0.375062 | 3_4:+52781781 | Msa0506420:CDS |
| AGCTTTGAAAGACATTGATT+TGG | 0.377272 | 3_4:+52780643 | Msa0506420:CDS |
| GGGATGTGCCTACAACTTAC+TGG | 0.398189 | 3_4:+52782591 | Msa0506420:CDS |
| ACAACAAGAGATCGTAGCTT+TGG | 0.398921 | 3_4:-52781103 | None:intergenic |
| CTACTAGATGCACGCAACTT+TGG | 0.399839 | 3_4:+52782691 | Msa0506420:CDS |
| ACTAGTCTCCAAGAATCATT+TGG | 0.400921 | 3_4:+52782480 | Msa0506420:CDS |
| GCAAAATCTTTCGTGGTTTG+TGG | 0.403233 | 3_4:-52781870 | None:intergenic |
| CCCAACCGCAAAATCTTTCG+TGG | 0.403776 | 3_4:-52781877 | None:intergenic |
| CTCAGGAAGCTCTTTACATA+TGG | 0.410794 | 3_4:-52780972 | None:intergenic |
| CTTAGTAGACATAAAATTTG+AGG | 0.413945 | 3_4:-52780879 | None:intergenic |
| ATTACCACTATCGTGGCCTT+TGG | 0.414318 | 3_4:-52781835 | None:intergenic |
| ATGCAACACTTCAACTTCCT+TGG | 0.414911 | 3_4:-52782821 | None:intergenic |
| AGCTCTTTACATATGGAGAT+TGG | 0.415026 | 3_4:-52781157 | None:intergenic |
| TGTTGCAGACATAAAATTTG+AGG | 0.426586 | 3_4:-52781068 | None:intergenic |
| TTTCTCCAAGTGAACGTTGT+TGG | 0.427016 | 3_4:-52782261 | None:intergenic |
| TGGAGGGAGAACGAATCTTT+GGG | 0.432581 | 3_4:-52780701 | None:intergenic |
| ATAAGTTCATTCTCCGTCTC+TGG | 0.433365 | 3_4:-52782082 | None:intergenic |
| CTCATGCCACTCTGAATTTG+TGG | 0.434852 | 3_4:+52782663 | Msa0506420:CDS |
| GATGCTGCCAGAGATAGTTT+TGG | 0.436273 | 3_4:-52781367 | None:intergenic |
| ATTATTAGATTCCAAGAAGC+AGG | 0.436490 | 3_4:+52782795 | Msa0506420:CDS |
| TAGCTCAGCCAGTAAGTTGT+AGG | 0.440715 | 3_4:-52782599 | None:intergenic |
| AATATAGTCTAATAGCCAAT+AGG | 0.441053 | 3_4:-52782952 | None:intergenic |
| ATCATTAGAACCTTTAGCTC+AGG | 0.459933 | 3_4:-52781181 | None:intergenic |
| TACTGCCGTCAAACCTTCTC+AGG | 0.470573 | 3_4:+52782288 | Msa0506420:CDS |
| CAACAAGAGATCGTAGCTTT+GGG | 0.476500 | 3_4:-52781102 | None:intergenic |
| CCAAGACACTATGAGTTTCA+AGG | 0.479878 | 3_4:-52782630 | None:intergenic |
| GAGGAAATATTTACAAGTGA+AGG | 0.484762 | 3_4:+52781223 | Msa0506420:CDS |
| GAGAACTTACCTCTCTTGAC+TGG | 0.488573 | 3_4:+52782508 | Msa0506420:CDS |
| TAAAGAGCTTCCTGAGCTAA+AGG | 0.489148 | 3_4:+52781171 | Msa0506420:CDS |
| CCTTGAAACTCATAGTGTCT+TGG | 0.491342 | 3_4:+52782630 | Msa0506420:CDS |
| GAATTGTCCAAAACTATCTC+TGG | 0.493202 | 3_4:+52781360 | Msa0506420:CDS |
| ATTACATGATTTACCTGAGA+AGG | 0.499290 | 3_4:-52782301 | None:intergenic |
| GTTGATGAATGAACAATCAA+TGG | 0.500702 | 3_4:+52782237 | Msa0506420:CDS |
| ACCAAGCCTCAGTCATGCAC+AGG | 0.507788 | 3_4:+52781300 | Msa0506420:CDS |
| GAGACCAAAGGCCACGATAG+TGG | 0.514259 | 3_4:+52781831 | Msa0506420:CDS |
| GTTGGATATTGTCGAAAGGC+GGG | 0.520487 | 3_4:+52782729 | Msa0506420:CDS |
| GATTGAAGTTCAAACAGCAT+TGG | 0.523469 | 3_4:+52781899 | Msa0506420:CDS |
| ATGGACCAACAACGTTCACT+TGG | 0.532238 | 3_4:+52782256 | Msa0506420:CDS |
| GGAATCTAATAATTCTTGCA+TGG | 0.540674 | 3_4:-52782785 | None:intergenic |
| ATTCTCAGATCATATAGCTC+AGG | 0.541501 | 3_4:-52780989 | None:intergenic |
| TTCACTGCGTAATAGATACA+AGG | 0.546061 | 3_4:+52782570 | Msa0506420:CDS |
| CCCTGTGCATGACTGAGGCT+TGG | 0.548077 | 3_4:-52781301 | None:intergenic |
| ACAAATGATACTTTCAACTT+CGG | 0.550971 | 3_4:-52780588 | None:intergenic |
| CAATATAATTCAACAAGAGT+CGG | 0.561890 | 3_4:+52782918 | Msa0506420:CDS |
| TTCCAAGAAGCAGGTTACCA+AGG | 0.566945 | 3_4:+52782804 | Msa0506420:CDS |
| ATTTACCTGAGAAGGTTTGA+CGG | 0.575083 | 3_4:-52782293 | None:intergenic |
| CAGACACCTTATTATAGAAG+TGG | 0.584589 | 3_4:-52780777 | None:intergenic |
| ACACAACTTGACTTCTCCAC+AGG | 0.594255 | 3_4:+52781923 | Msa0506420:CDS |
| AATAAGGTGTCTGCCACAGT+TGG | 0.600697 | 3_4:+52780787 | Msa0506420:CDS |
| TTGAAGAATGCAATGAGTTG+AGG | 0.601431 | 3_4:+52781011 | Msa0506420:CDS |
| GGTTGGATATTGTCGAAAGG+CGG | 0.604942 | 3_4:+52782728 | Msa0506420:CDS |
| AATGAAAGAAACACCAGAGA+CGG | 0.620557 | 3_4:+52782069 | Msa0506420:CDS |
| GAATTCCCTGTGCATGACTG+AGG | 0.627260 | 3_4:-52781306 | None:intergenic |
| ACAAGGAAACCAGTCAAGAG+AGG | 0.641650 | 3_4:-52782517 | None:intergenic |
| CCAAGCCTCAGTCATGCACA+GGG | 0.649471 | 3_4:+52781301 | Msa0506420:CDS |
| ATTCTTATAGTAACCAACTG+TGG | 0.649769 | 3_4:-52780800 | None:intergenic |
| ATTGGTTGGATATTGTCGAA+AGG | 0.651119 | 3_4:+52782725 | Msa0506420:CDS |
| TGAAGGTGATGATCACAAAG+TGG | 0.676951 | 3_4:+52781240 | Msa0506420:CDS |
| TCACTGCGTAATAGATACAA+GGG | 0.680220 | 3_4:+52782571 | Msa0506420:CDS |
| CAATTACAAAGAGAGACCAA+AGG | 0.720626 | 3_4:+52781819 | Msa0506420:CDS |
| GTAGCTCCACAAATTCAGAG+TGG | 0.773151 | 3_4:-52782669 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAGTTTTTAAAAACATAT+TGG | - | chr3_4:52781453-52781472 | None:intergenic | 10.0% |
| !!! | AATAGTTTTTAAAAACATAT+TGG | - | chr3_4:52781453-52781472 | None:intergenic | 10.0% |
| !!! | TTTTAAAAACTATTACATGT+TGG | + | chr3_4:52781459-52781478 | Msa0506420:intron | 15.0% |
| !!! | AAATACTAACAAATATTTTG+AGG | + | chr3_4:52781947-52781966 | Msa0506420:intron | 15.0% |
| !!! | TTTTAAAAACTATTACATGT+TGG | + | chr3_4:52781459-52781478 | Msa0506420:intron | 15.0% |
| !!! | AAATACTAACAAATATTTTG+AGG | + | chr3_4:52781947-52781966 | Msa0506420:intron | 15.0% |
| !!! | TTTTTAATCTTGTAAGGTTT+TGG | - | chr3_4:52780724-52780743 | None:intergenic | 20.0% |
| !! | CTTACAAGATTAAAAATCAA+GGG | + | chr3_4:52780728-52780747 | Msa0506420:CDS | 20.0% |
| !! | GCATGATATGTAATTATTTA+CGG | - | chr3_4:52781485-52781504 | None:intergenic | 20.0% |
| !!! | ATAAGTATTTCTAAAACGTA+AGG | + | chr3_4:52781569-52781588 | Msa0506420:intron | 20.0% |
| !!! | TAAGTATTTCTAAAACGTAA+GGG | + | chr3_4:52781570-52781589 | Msa0506420:intron | 20.0% |
| !! | TTGATTCAAATATATTGTCA+TGG | - | chr3_4:52782023-52782042 | None:intergenic | 20.0% |
| !!! | ATTTTGTGCTAAAAAAACAA+AGG | + | chr3_4:52782366-52782385 | Msa0506420:intron | 20.0% |
| !!! | TTTTTAATCTTGTAAGGTTT+TGG | - | chr3_4:52780724-52780743 | None:intergenic | 20.0% |
| !! | CTTACAAGATTAAAAATCAA+GGG | + | chr3_4:52780728-52780747 | Msa0506420:CDS | 20.0% |
| !! | GCATGATATGTAATTATTTA+CGG | - | chr3_4:52781485-52781504 | None:intergenic | 20.0% |
| !!! | ATAAGTATTTCTAAAACGTA+AGG | + | chr3_4:52781569-52781588 | Msa0506420:intron | 20.0% |
| !!! | TAAGTATTTCTAAAACGTAA+GGG | + | chr3_4:52781570-52781589 | Msa0506420:intron | 20.0% |
| !! | TTGATTCAAATATATTGTCA+TGG | - | chr3_4:52782023-52782042 | None:intergenic | 20.0% |
| !!! | ATTTTGTGCTAAAAAAACAA+AGG | + | chr3_4:52782366-52782385 | Msa0506420:intron | 20.0% |
| ! | ACAAATGATACTTTCAACTT+CGG | - | chr3_4:52780591-52780610 | None:intergenic | 25.0% |
| !! | CCTTGATTTTTAATCTTGTA+AGG | - | chr3_4:52780730-52780749 | None:intergenic | 25.0% |
| ! | CCTTACAAGATTAAAAATCA+AGG | + | chr3_4:52780727-52780746 | Msa0506420:CDS | 25.0% |
| !! | TTTTCTCCACTTCTATAATA+AGG | + | chr3_4:52780771-52780790 | Msa0506420:CDS | 25.0% |
| ! | CTTAGTAGACATAAAATTTG+AGG | - | chr3_4:52780882-52780901 | None:intergenic | 25.0% |
| !!! | CTACAAGTATTTTTAGCTTT+GGG | - | chr3_4:52780913-52780932 | None:intergenic | 25.0% |
| !!! | ACTACAAGTATTTTTAGCTT+TGG | - | chr3_4:52780914-52780933 | None:intergenic | 25.0% |
| ! | GCATATTATTGAAGATGATT+TGG | + | chr3_4:52781033-52781052 | Msa0506420:CDS | 25.0% |
| ! | AATGCTACAAATTTCAGATT+TGG | - | chr3_4:52781271-52781290 | None:intergenic | 25.0% |
| !!! | GAAATATCATTTTTGAAGTC+TGG | - | chr3_4:52781397-52781416 | None:intergenic | 25.0% |
| !!! | GATATTTCTGTTTCAGATTT+TGG | + | chr3_4:52781409-52781428 | Msa0506420:CDS | 25.0% |
| ! | TCATGCATTAGTATTGTTAA+AGG | + | chr3_4:52781499-52781518 | Msa0506420:intron | 25.0% |
| ! | TGATGATATACAATTGAAAG+CGG | + | chr3_4:52781691-52781710 | Msa0506420:intron | 25.0% |
| ! | TATGCTTGAGTTACTATATA+AGG | + | chr3_4:52781729-52781748 | Msa0506420:intron | 25.0% |
| !! | ATTATACTTTGCTGTAGATT+CGG | + | chr3_4:52781764-52781783 | Msa0506420:intron | 25.0% |
| !! | TATTTGTTAGTATTTACCTG+TGG | - | chr3_4:52781942-52781961 | None:intergenic | 25.0% |
| !!! | CTAACAAATATTTTGAGGTT+AGG | + | chr3_4:52781952-52781971 | Msa0506420:intron | 25.0% |
| ! | AAATATATTGTCATGGTGAT+TGG | - | chr3_4:52782016-52782035 | None:intergenic | 25.0% |
| !! | TTTGTTGGTATTTCTAAATC+AGG | - | chr3_4:52782118-52782137 | None:intergenic | 25.0% |
| !!! | GAAATCACTTTTAAGTTTGT+TGG | - | chr3_4:52782133-52782152 | None:intergenic | 25.0% |
| ! | CAAACTTAAAAGTGATTTCT+AGG | + | chr3_4:52782134-52782153 | Msa0506420:intron | 25.0% |
| ! | TATCTAACTCAATTCAAACA+TGG | - | chr3_4:52782160-52782179 | None:intergenic | 25.0% |
| !!! | AATCTTCTACATTTTGAGAA+GGG | - | chr3_4:52782423-52782442 | None:intergenic | 25.0% |
| !!! | AAATCTTCTACATTTTGAGA+AGG | - | chr3_4:52782424-52782443 | None:intergenic | 25.0% |
| ! | TCTTGAGATATTTGTATATC+AGG | - | chr3_4:52782763-52782782 | None:intergenic | 25.0% |
| ! | CAATATAATTCAACAAGAGT+CGG | + | chr3_4:52782918-52782937 | Msa0506420:CDS | 25.0% |
| ! | ACAAATGATACTTTCAACTT+CGG | - | chr3_4:52780591-52780610 | None:intergenic | 25.0% |
| !! | CCTTGATTTTTAATCTTGTA+AGG | - | chr3_4:52780730-52780749 | None:intergenic | 25.0% |
| ! | CCTTACAAGATTAAAAATCA+AGG | + | chr3_4:52780727-52780746 | Msa0506420:CDS | 25.0% |
| !! | TTTTCTCCACTTCTATAATA+AGG | + | chr3_4:52780771-52780790 | Msa0506420:CDS | 25.0% |
| ! | CTTAGTAGACATAAAATTTG+AGG | - | chr3_4:52780882-52780901 | None:intergenic | 25.0% |
| !!! | CTACAAGTATTTTTAGCTTT+GGG | - | chr3_4:52780913-52780932 | None:intergenic | 25.0% |
| !!! | ACTACAAGTATTTTTAGCTT+TGG | - | chr3_4:52780914-52780933 | None:intergenic | 25.0% |
| ! | GCATATTATTGAAGATGATT+TGG | + | chr3_4:52781033-52781052 | Msa0506420:CDS | 25.0% |
| ! | AATGCTACAAATTTCAGATT+TGG | - | chr3_4:52781271-52781290 | None:intergenic | 25.0% |
| !!! | GAAATATCATTTTTGAAGTC+TGG | - | chr3_4:52781397-52781416 | None:intergenic | 25.0% |
| !!! | GATATTTCTGTTTCAGATTT+TGG | + | chr3_4:52781409-52781428 | Msa0506420:CDS | 25.0% |
| ! | TCATGCATTAGTATTGTTAA+AGG | + | chr3_4:52781499-52781518 | Msa0506420:intron | 25.0% |
| ! | TGATGATATACAATTGAAAG+CGG | + | chr3_4:52781691-52781710 | Msa0506420:intron | 25.0% |
| ! | TATGCTTGAGTTACTATATA+AGG | + | chr3_4:52781729-52781748 | Msa0506420:intron | 25.0% |
| !! | ATTATACTTTGCTGTAGATT+CGG | + | chr3_4:52781764-52781783 | Msa0506420:intron | 25.0% |
| !! | TATTTGTTAGTATTTACCTG+TGG | - | chr3_4:52781942-52781961 | None:intergenic | 25.0% |
| !!! | CTAACAAATATTTTGAGGTT+AGG | + | chr3_4:52781952-52781971 | Msa0506420:intron | 25.0% |
| ! | AAATATATTGTCATGGTGAT+TGG | - | chr3_4:52782016-52782035 | None:intergenic | 25.0% |
| !! | TTTGTTGGTATTTCTAAATC+AGG | - | chr3_4:52782118-52782137 | None:intergenic | 25.0% |
| !!! | GAAATCACTTTTAAGTTTGT+TGG | - | chr3_4:52782133-52782152 | None:intergenic | 25.0% |
| ! | CAAACTTAAAAGTGATTTCT+AGG | + | chr3_4:52782134-52782153 | Msa0506420:intron | 25.0% |
| ! | TATCTAACTCAATTCAAACA+TGG | - | chr3_4:52782160-52782179 | None:intergenic | 25.0% |
| !!! | AATCTTCTACATTTTGAGAA+GGG | - | chr3_4:52782423-52782442 | None:intergenic | 25.0% |
| !!! | AAATCTTCTACATTTTGAGA+AGG | - | chr3_4:52782424-52782443 | None:intergenic | 25.0% |
| ! | TCTTGAGATATTTGTATATC+AGG | - | chr3_4:52782763-52782782 | None:intergenic | 25.0% |
| ! | CAATATAATTCAACAAGAGT+CGG | + | chr3_4:52782918-52782937 | Msa0506420:CDS | 25.0% |
| !! | AGCTTTGAAAGACATTGATT+TGG | + | chr3_4:52780643-52780662 | Msa0506420:CDS | 30.0% |
| !!! | TAATCTTGTAAGGTTTTGGA+GGG | - | chr3_4:52780720-52780739 | None:intergenic | 30.0% |
| !! | TTAATCTTGTAAGGTTTTGG+AGG | - | chr3_4:52780721-52780740 | None:intergenic | 30.0% |
| ATTCTTATAGTAACCAACTG+TGG | - | chr3_4:52780803-52780822 | None:intergenic | 30.0% | |
| GCATATCATTGAAGATGATT+TGG | + | chr3_4:52780844-52780863 | Msa0506420:CDS | 30.0% | |
| AGCTCTTTACATATGGAAAT+TGG | - | chr3_4:52780968-52780987 | None:intergenic | 30.0% | |
| TGTTGCAGACATAAAATTTG+AGG | - | chr3_4:52781071-52781090 | None:intergenic | 30.0% | |
| GAGGAAATATTTACAAGTGA+AGG | + | chr3_4:52781223-52781242 | Msa0506420:CDS | 30.0% | |
| ATTCGGAATTGTTTGACTAT+TGG | + | chr3_4:52781781-52781800 | Msa0506420:CDS | 30.0% | |
| AATGCTTATGTTCTTGTTAC+AGG | + | chr3_4:52782213-52782232 | Msa0506420:intron | 30.0% | |
| ! | GTTGATGAATGAACAATCAA+TGG | + | chr3_4:52782237-52782256 | Msa0506420:CDS | 30.0% |
| ATTACATGATTTACCTGAGA+AGG | - | chr3_4:52782304-52782323 | None:intergenic | 30.0% | |
| !! | TTAGCTTTATATGCACAATG+CGG | - | chr3_4:52782336-52782355 | None:intergenic | 30.0% |
| TTATTCCTTCCTTTACTTTC+AGG | + | chr3_4:52782394-52782413 | Msa0506420:intron | 30.0% | |
| CTCATAATCCAAATGATTCT+TGG | - | chr3_4:52782491-52782510 | None:intergenic | 30.0% | |
| ! | GAACAGAAGGATTTTTAACA+AGG | - | chr3_4:52782537-52782556 | None:intergenic | 30.0% |
| ! | TTGTCTTTTAAACGAACAGA+AGG | - | chr3_4:52782550-52782569 | None:intergenic | 30.0% |
| !!! | ACTTTGGTTTTGATAAGGAT+TGG | + | chr3_4:52782707-52782726 | Msa0506420:CDS | 30.0% |
| GGAATCTAATAATTCTTGCA+TGG | - | chr3_4:52782788-52782807 | None:intergenic | 30.0% | |
| ATTATTAGATTCCAAGAAGC+AGG | + | chr3_4:52782795-52782814 | Msa0506420:CDS | 30.0% | |
| !! | AGAGATTTTAAGTCAACATG+TGG | + | chr3_4:52782852-52782871 | Msa0506420:CDS | 30.0% |
| ! | ATTGTTCAAAACAGCTTTAG+AGG | - | chr3_4:52782902-52782921 | None:intergenic | 30.0% |
| !! | AGCTTTGAAAGACATTGATT+TGG | + | chr3_4:52780643-52780662 | Msa0506420:CDS | 30.0% |
| !!! | TAATCTTGTAAGGTTTTGGA+GGG | - | chr3_4:52780720-52780739 | None:intergenic | 30.0% |
| !! | TTAATCTTGTAAGGTTTTGG+AGG | - | chr3_4:52780721-52780740 | None:intergenic | 30.0% |
| ATTCTTATAGTAACCAACTG+TGG | - | chr3_4:52780803-52780822 | None:intergenic | 30.0% | |
| GCATATCATTGAAGATGATT+TGG | + | chr3_4:52780844-52780863 | Msa0506420:CDS | 30.0% | |
| AGCTCTTTACATATGGAAAT+TGG | - | chr3_4:52780968-52780987 | None:intergenic | 30.0% | |
| TGTTGCAGACATAAAATTTG+AGG | - | chr3_4:52781071-52781090 | None:intergenic | 30.0% | |
| GAGGAAATATTTACAAGTGA+AGG | + | chr3_4:52781223-52781242 | Msa0506420:CDS | 30.0% | |
| ATTCGGAATTGTTTGACTAT+TGG | + | chr3_4:52781781-52781800 | Msa0506420:CDS | 30.0% | |
| AATGCTTATGTTCTTGTTAC+AGG | + | chr3_4:52782213-52782232 | Msa0506420:intron | 30.0% | |
| ! | GTTGATGAATGAACAATCAA+TGG | + | chr3_4:52782237-52782256 | Msa0506420:CDS | 30.0% |
| ATTACATGATTTACCTGAGA+AGG | - | chr3_4:52782304-52782323 | None:intergenic | 30.0% | |
| !! | TTAGCTTTATATGCACAATG+CGG | - | chr3_4:52782336-52782355 | None:intergenic | 30.0% |
| TTATTCCTTCCTTTACTTTC+AGG | + | chr3_4:52782394-52782413 | Msa0506420:intron | 30.0% | |
| CTCATAATCCAAATGATTCT+TGG | - | chr3_4:52782491-52782510 | None:intergenic | 30.0% | |
| ! | GAACAGAAGGATTTTTAACA+AGG | - | chr3_4:52782537-52782556 | None:intergenic | 30.0% |
| ! | TTGTCTTTTAAACGAACAGA+AGG | - | chr3_4:52782550-52782569 | None:intergenic | 30.0% |
| !!! | ACTTTGGTTTTGATAAGGAT+TGG | + | chr3_4:52782707-52782726 | Msa0506420:CDS | 30.0% |
| GGAATCTAATAATTCTTGCA+TGG | - | chr3_4:52782788-52782807 | None:intergenic | 30.0% | |
| ATTATTAGATTCCAAGAAGC+AGG | + | chr3_4:52782795-52782814 | Msa0506420:CDS | 30.0% | |
| !! | AGAGATTTTAAGTCAACATG+TGG | + | chr3_4:52782852-52782871 | Msa0506420:CDS | 30.0% |
| ! | ATTGTTCAAAACAGCTTTAG+AGG | - | chr3_4:52782902-52782921 | None:intergenic | 30.0% |
| ! | ACAAAAAGGCATGTCATCAT+AGG | - | chr3_4:52780677-52780696 | None:intergenic | 35.0% |
| ! | TATGATGACATGCCTTTTTG+TGG | + | chr3_4:52780676-52780695 | Msa0506420:CDS | 35.0% |
| ! | ATGATGACATGCCTTTTTGT+GGG | + | chr3_4:52780677-52780696 | Msa0506420:CDS | 35.0% |
| CAGACACCTTATTATAGAAG+TGG | - | chr3_4:52780780-52780799 | None:intergenic | 35.0% | |
| ATTCTCAGATCATATAGCTC+AGG | - | chr3_4:52780992-52781011 | None:intergenic | 35.0% | |
| TTGAAGAATGCAATGAGTTG+AGG | + | chr3_4:52781011-52781030 | Msa0506420:CDS | 35.0% | |
| AGCTCTTTACATATGGAGAT+TGG | - | chr3_4:52781160-52781179 | None:intergenic | 35.0% | |
| ! | ATCATTAGAACCTTTAGCTC+AGG | - | chr3_4:52781184-52781203 | None:intergenic | 35.0% |
| GAATTGTCCAAAACTATCTC+TGG | + | chr3_4:52781360-52781379 | Msa0506420:CDS | 35.0% | |
| !!! | TCTGTTTCAGATTTTGGCTA+TGG | + | chr3_4:52781415-52781434 | Msa0506420:CDS | 35.0% |
| CAATTACAAAGAGAGACCAA+AGG | + | chr3_4:52781819-52781838 | Msa0506420:CDS | 35.0% | |
| ! | GATTTTCATTACCACTATCG+TGG | - | chr3_4:52781845-52781864 | None:intergenic | 35.0% |
| ! | ACAAACCACGAAAGATTTTG+CGG | + | chr3_4:52781872-52781891 | Msa0506420:CDS | 35.0% |
| GATTGAAGTTCAAACAGCAT+TGG | + | chr3_4:52781899-52781918 | Msa0506420:CDS | 35.0% | |
| AATGAAAGAAACACCAGAGA+CGG | + | chr3_4:52782069-52782088 | Msa0506420:CDS | 35.0% | |
| ATTTACCTGAGAAGGTTTGA+CGG | - | chr3_4:52782296-52782315 | None:intergenic | 35.0% | |
| ! | ACTAGTCTCCAAGAATCATT+TGG | + | chr3_4:52782480-52782499 | Msa0506420:CDS | 35.0% |
| TTCACTGCGTAATAGATACA+AGG | + | chr3_4:52782570-52782589 | Msa0506420:CDS | 35.0% | |
| TCACTGCGTAATAGATACAA+GGG | + | chr3_4:52782571-52782590 | Msa0506420:CDS | 35.0% | |
| CATAGTGTCTTGGATGTATT+AGG | + | chr3_4:52782640-52782659 | Msa0506420:CDS | 35.0% | |
| !!! | ACGCAACTTTGGTTTTGATA+AGG | + | chr3_4:52782702-52782721 | Msa0506420:CDS | 35.0% |
| !!! | TGGTTTTGATAAGGATTGGT+TGG | + | chr3_4:52782711-52782730 | Msa0506420:CDS | 35.0% |
| ATTGGTTGGATATTGTCGAA+AGG | + | chr3_4:52782725-52782744 | Msa0506420:CDS | 35.0% | |
| !! | GATTTTAAGTCAACATGTGG+AGG | + | chr3_4:52782855-52782874 | Msa0506420:CDS | 35.0% |
| ! | ACAAAAAGGCATGTCATCAT+AGG | - | chr3_4:52780677-52780696 | None:intergenic | 35.0% |
| ! | TATGATGACATGCCTTTTTG+TGG | + | chr3_4:52780676-52780695 | Msa0506420:CDS | 35.0% |
| ! | ATGATGACATGCCTTTTTGT+GGG | + | chr3_4:52780677-52780696 | Msa0506420:CDS | 35.0% |
| CAGACACCTTATTATAGAAG+TGG | - | chr3_4:52780780-52780799 | None:intergenic | 35.0% | |
| ATTCTCAGATCATATAGCTC+AGG | - | chr3_4:52780992-52781011 | None:intergenic | 35.0% | |
| TTGAAGAATGCAATGAGTTG+AGG | + | chr3_4:52781011-52781030 | Msa0506420:CDS | 35.0% | |
| AGCTCTTTACATATGGAGAT+TGG | - | chr3_4:52781160-52781179 | None:intergenic | 35.0% | |
| ! | ATCATTAGAACCTTTAGCTC+AGG | - | chr3_4:52781184-52781203 | None:intergenic | 35.0% |
| GAATTGTCCAAAACTATCTC+TGG | + | chr3_4:52781360-52781379 | Msa0506420:CDS | 35.0% | |
| !!! | TCTGTTTCAGATTTTGGCTA+TGG | + | chr3_4:52781415-52781434 | Msa0506420:CDS | 35.0% |
| CAATTACAAAGAGAGACCAA+AGG | + | chr3_4:52781819-52781838 | Msa0506420:CDS | 35.0% | |
| ! | GATTTTCATTACCACTATCG+TGG | - | chr3_4:52781845-52781864 | None:intergenic | 35.0% |
| ! | ACAAACCACGAAAGATTTTG+CGG | + | chr3_4:52781872-52781891 | Msa0506420:CDS | 35.0% |
| GATTGAAGTTCAAACAGCAT+TGG | + | chr3_4:52781899-52781918 | Msa0506420:CDS | 35.0% | |
| AATGAAAGAAACACCAGAGA+CGG | + | chr3_4:52782069-52782088 | Msa0506420:CDS | 35.0% | |
| ATTTACCTGAGAAGGTTTGA+CGG | - | chr3_4:52782296-52782315 | None:intergenic | 35.0% | |
| ! | ACTAGTCTCCAAGAATCATT+TGG | + | chr3_4:52782480-52782499 | Msa0506420:CDS | 35.0% |
| TTCACTGCGTAATAGATACA+AGG | + | chr3_4:52782570-52782589 | Msa0506420:CDS | 35.0% | |
| TCACTGCGTAATAGATACAA+GGG | + | chr3_4:52782571-52782590 | Msa0506420:CDS | 35.0% | |
| CATAGTGTCTTGGATGTATT+AGG | + | chr3_4:52782640-52782659 | Msa0506420:CDS | 35.0% | |
| !!! | ACGCAACTTTGGTTTTGATA+AGG | + | chr3_4:52782702-52782721 | Msa0506420:CDS | 35.0% |
| !!! | TGGTTTTGATAAGGATTGGT+TGG | + | chr3_4:52782711-52782730 | Msa0506420:CDS | 35.0% |
| ATTGGTTGGATATTGTCGAA+AGG | + | chr3_4:52782725-52782744 | Msa0506420:CDS | 35.0% | |
| !! | GATTTTAAGTCAACATGTGG+AGG | + | chr3_4:52782855-52782874 | Msa0506420:CDS | 35.0% |
| !! | AATCTTTGGGACCCACAAAA+AGG | - | chr3_4:52780691-52780710 | None:intergenic | 40.0% |
| CTCAGGAAGCTCTTTACATA+TGG | - | chr3_4:52780975-52780994 | None:intergenic | 40.0% | |
| CAACAAGAGATCGTAGCTTT+GGG | - | chr3_4:52781105-52781124 | None:intergenic | 40.0% | |
| ACAACAAGAGATCGTAGCTT+TGG | - | chr3_4:52781106-52781125 | None:intergenic | 40.0% | |
| CTCAGGAAGCTCTTTACATA+TGG | - | chr3_4:52780975-52780994 | None:intergenic | 40.0% | |
| TAAAGAGCTTCCTGAGCTAA+AGG | + | chr3_4:52781171-52781190 | Msa0506420:CDS | 40.0% | |
| AAGAGAAGCAGATGAGTTAG+AGG | + | chr3_4:52781204-52781223 | Msa0506420:CDS | 40.0% | |
| TGAAGGTGATGATCACAAAG+TGG | + | chr3_4:52781240-52781259 | Msa0506420:CDS | 40.0% | |
| GCAAAATCTTTCGTGGTTTG+TGG | - | chr3_4:52781873-52781892 | None:intergenic | 40.0% | |
| AGTGGTAAGCACAGAATTTC+TGG | - | chr3_4:52781986-52782005 | None:intergenic | 40.0% | |
| ATGGTGATTGGATTCAGAAG+TGG | - | chr3_4:52782004-52782023 | None:intergenic | 40.0% | |
| ATAAGTTCATTCTCCGTCTC+TGG | - | chr3_4:52782085-52782104 | None:intergenic | 40.0% | |
| TTTCTCCAAGTGAACGTTGT+TGG | - | chr3_4:52782264-52782283 | None:intergenic | 40.0% | |
| CCAAGACACTATGAGTTTCA+AGG | - | chr3_4:52782633-52782652 | None:intergenic | 40.0% | |
| CCTTGAAACTCATAGTGTCT+TGG | + | chr3_4:52782630-52782649 | Msa0506420:CDS | 40.0% | |
| ATGCAACACTTCAACTTCCT+TGG | - | chr3_4:52782824-52782843 | None:intergenic | 40.0% | |
| !!! | TCGGTTTTAAGTGCACCTAT+TGG | + | chr3_4:52782937-52782956 | Msa0506420:CDS | 40.0% |
| !! | AATCTTTGGGACCCACAAAA+AGG | - | chr3_4:52780691-52780710 | None:intergenic | 40.0% |
| CTCAGGAAGCTCTTTACATA+TGG | - | chr3_4:52780975-52780994 | None:intergenic | 40.0% | |
| CAACAAGAGATCGTAGCTTT+GGG | - | chr3_4:52781105-52781124 | None:intergenic | 40.0% | |
| ACAACAAGAGATCGTAGCTT+TGG | - | chr3_4:52781106-52781125 | None:intergenic | 40.0% | |
| CTCAGGAAGCTCTTTACATA+TGG | - | chr3_4:52780975-52780994 | None:intergenic | 40.0% | |
| TAAAGAGCTTCCTGAGCTAA+AGG | + | chr3_4:52781171-52781190 | Msa0506420:CDS | 40.0% | |
| AAGAGAAGCAGATGAGTTAG+AGG | + | chr3_4:52781204-52781223 | Msa0506420:CDS | 40.0% | |
| TGAAGGTGATGATCACAAAG+TGG | + | chr3_4:52781240-52781259 | Msa0506420:CDS | 40.0% | |
| GCAAAATCTTTCGTGGTTTG+TGG | - | chr3_4:52781873-52781892 | None:intergenic | 40.0% | |
| AGTGGTAAGCACAGAATTTC+TGG | - | chr3_4:52781986-52782005 | None:intergenic | 40.0% | |
| ATGGTGATTGGATTCAGAAG+TGG | - | chr3_4:52782004-52782023 | None:intergenic | 40.0% | |
| ATAAGTTCATTCTCCGTCTC+TGG | - | chr3_4:52782085-52782104 | None:intergenic | 40.0% | |
| TTTCTCCAAGTGAACGTTGT+TGG | - | chr3_4:52782264-52782283 | None:intergenic | 40.0% | |
| CCAAGACACTATGAGTTTCA+AGG | - | chr3_4:52782633-52782652 | None:intergenic | 40.0% | |
| CCTTGAAACTCATAGTGTCT+TGG | + | chr3_4:52782630-52782649 | Msa0506420:CDS | 40.0% | |
| ATGCAACACTTCAACTTCCT+TGG | - | chr3_4:52782824-52782843 | None:intergenic | 40.0% | |
| !!! | TCGGTTTTAAGTGCACCTAT+TGG | + | chr3_4:52782937-52782956 | Msa0506420:CDS | 40.0% |
| TGGAGGGAGAACGAATCTTT+GGG | - | chr3_4:52780704-52780723 | None:intergenic | 45.0% | |
| TTGGAGGGAGAACGAATCTT+TGG | - | chr3_4:52780705-52780724 | None:intergenic | 45.0% | |
| ! | AATAAGGTGTCTGCCACAGT+TGG | + | chr3_4:52780787-52780806 | Msa0506420:CDS | 45.0% |
| ! | GATGCTGCCAGAGATAGTTT+TGG | - | chr3_4:52781370-52781389 | None:intergenic | 45.0% |
| ATTACCACTATCGTGGCCTT+TGG | - | chr3_4:52781838-52781857 | None:intergenic | 45.0% | |
| ! | TCTTTCGTGGTTTGTGGACT+AGG | - | chr3_4:52781867-52781886 | None:intergenic | 45.0% |
| ! | ACCACGAAAGATTTTGCGGT+TGG | + | chr3_4:52781876-52781895 | Msa0506420:CDS | 45.0% |
| ! | CCACGAAAGATTTTGCGGTT+GGG | + | chr3_4:52781877-52781896 | Msa0506420:CDS | 45.0% |
| ACACAACTTGACTTCTCCAC+AGG | + | chr3_4:52781923-52781942 | Msa0506420:CDS | 45.0% | |
| ATGGACCAACAACGTTCACT+TGG | + | chr3_4:52782256-52782275 | Msa0506420:CDS | 45.0% | |
| GCTTTATATGCACAATGCGG+TGG | - | chr3_4:52782333-52782352 | None:intergenic | 45.0% | |
| GGTCTCCTGAAAGTAAAGGA+AGG | - | chr3_4:52782402-52782421 | None:intergenic | 45.0% | |
| GAAGGGTCTCCTGAAAGTAA+AGG | - | chr3_4:52782406-52782425 | None:intergenic | 45.0% | |
| GAGAACTTACCTCTCTTGAC+TGG | + | chr3_4:52782508-52782527 | Msa0506420:CDS | 45.0% | |
| ACAAGGAAACCAGTCAAGAG+AGG | - | chr3_4:52782520-52782539 | None:intergenic | 45.0% | |
| TAGCTCAGCCAGTAAGTTGT+AGG | - | chr3_4:52782602-52782621 | None:intergenic | 45.0% | |
| CTCATGCCACTCTGAATTTG+TGG | + | chr3_4:52782663-52782682 | Msa0506420:CDS | 45.0% | |
| GTAGCTCCACAAATTCAGAG+TGG | - | chr3_4:52782672-52782691 | None:intergenic | 45.0% | |
| CTACTAGATGCACGCAACTT+TGG | + | chr3_4:52782691-52782710 | Msa0506420:CDS | 45.0% | |
| GGTTGGATATTGTCGAAAGG+CGG | + | chr3_4:52782728-52782747 | Msa0506420:CDS | 45.0% | |
| GTTGGATATTGTCGAAAGGC+GGG | + | chr3_4:52782729-52782748 | Msa0506420:CDS | 45.0% | |
| TTCCAAGAAGCAGGTTACCA+AGG | + | chr3_4:52782804-52782823 | Msa0506420:CDS | 45.0% | |
| ! | TTCCTTGGTAACCTGCTTCT+TGG | - | chr3_4:52782809-52782828 | None:intergenic | 45.0% |
| TGGAGGGAGAACGAATCTTT+GGG | - | chr3_4:52780704-52780723 | None:intergenic | 45.0% | |
| TTGGAGGGAGAACGAATCTT+TGG | - | chr3_4:52780705-52780724 | None:intergenic | 45.0% | |
| ! | AATAAGGTGTCTGCCACAGT+TGG | + | chr3_4:52780787-52780806 | Msa0506420:CDS | 45.0% |
| ! | GATGCTGCCAGAGATAGTTT+TGG | - | chr3_4:52781370-52781389 | None:intergenic | 45.0% |
| ATTACCACTATCGTGGCCTT+TGG | - | chr3_4:52781838-52781857 | None:intergenic | 45.0% | |
| ! | TCTTTCGTGGTTTGTGGACT+AGG | - | chr3_4:52781867-52781886 | None:intergenic | 45.0% |
| ! | ACCACGAAAGATTTTGCGGT+TGG | + | chr3_4:52781876-52781895 | Msa0506420:CDS | 45.0% |
| ! | CCACGAAAGATTTTGCGGTT+GGG | + | chr3_4:52781877-52781896 | Msa0506420:CDS | 45.0% |
| ACACAACTTGACTTCTCCAC+AGG | + | chr3_4:52781923-52781942 | Msa0506420:CDS | 45.0% | |
| ATGGACCAACAACGTTCACT+TGG | + | chr3_4:52782256-52782275 | Msa0506420:CDS | 45.0% | |
| GCTTTATATGCACAATGCGG+TGG | - | chr3_4:52782333-52782352 | None:intergenic | 45.0% | |
| GGTCTCCTGAAAGTAAAGGA+AGG | - | chr3_4:52782402-52782421 | None:intergenic | 45.0% | |
| GAAGGGTCTCCTGAAAGTAA+AGG | - | chr3_4:52782406-52782425 | None:intergenic | 45.0% | |
| GAGAACTTACCTCTCTTGAC+TGG | + | chr3_4:52782508-52782527 | Msa0506420:CDS | 45.0% | |
| ACAAGGAAACCAGTCAAGAG+AGG | - | chr3_4:52782520-52782539 | None:intergenic | 45.0% | |
| TAGCTCAGCCAGTAAGTTGT+AGG | - | chr3_4:52782602-52782621 | None:intergenic | 45.0% | |
| CTCATGCCACTCTGAATTTG+TGG | + | chr3_4:52782663-52782682 | Msa0506420:CDS | 45.0% | |
| GTAGCTCCACAAATTCAGAG+TGG | - | chr3_4:52782672-52782691 | None:intergenic | 45.0% | |
| CTACTAGATGCACGCAACTT+TGG | + | chr3_4:52782691-52782710 | Msa0506420:CDS | 45.0% | |
| GGTTGGATATTGTCGAAAGG+CGG | + | chr3_4:52782728-52782747 | Msa0506420:CDS | 45.0% | |
| GTTGGATATTGTCGAAAGGC+GGG | + | chr3_4:52782729-52782748 | Msa0506420:CDS | 45.0% | |
| TTCCAAGAAGCAGGTTACCA+AGG | + | chr3_4:52782804-52782823 | Msa0506420:CDS | 45.0% | |
| ! | TTCCTTGGTAACCTGCTTCT+TGG | - | chr3_4:52782809-52782828 | None:intergenic | 45.0% |
| GAATTCCCTGTGCATGACTG+AGG | - | chr3_4:52781309-52781328 | None:intergenic | 50.0% | |
| CCCAACCGCAAAATCTTTCG+TGG | - | chr3_4:52781880-52781899 | None:intergenic | 50.0% | |
| TACTGCCGTCAAACCTTCTC+AGG | + | chr3_4:52782288-52782307 | Msa0506420:CDS | 50.0% | |
| GGGATGTGCCTACAACTTAC+TGG | + | chr3_4:52782591-52782610 | Msa0506420:CDS | 50.0% | |
| GAATTCCCTGTGCATGACTG+AGG | - | chr3_4:52781309-52781328 | None:intergenic | 50.0% | |
| CCCAACCGCAAAATCTTTCG+TGG | - | chr3_4:52781880-52781899 | None:intergenic | 50.0% | |
| TACTGCCGTCAAACCTTCTC+AGG | + | chr3_4:52782288-52782307 | Msa0506420:CDS | 50.0% | |
| GGGATGTGCCTACAACTTAC+TGG | + | chr3_4:52782591-52782610 | Msa0506420:CDS | 50.0% | |
| ACCAAGCCTCAGTCATGCAC+AGG | + | chr3_4:52781300-52781319 | Msa0506420:CDS | 55.0% | |
| CCAAGCCTCAGTCATGCACA+GGG | + | chr3_4:52781301-52781320 | Msa0506420:CDS | 55.0% | |
| GAGACCAAAGGCCACGATAG+TGG | + | chr3_4:52781831-52781850 | Msa0506420:CDS | 55.0% | |
| ACCAAGCCTCAGTCATGCAC+AGG | + | chr3_4:52781300-52781319 | Msa0506420:CDS | 55.0% | |
| CCAAGCCTCAGTCATGCACA+GGG | + | chr3_4:52781301-52781320 | Msa0506420:CDS | 55.0% | |
| GAGACCAAAGGCCACGATAG+TGG | + | chr3_4:52781831-52781850 | Msa0506420:CDS | 55.0% | |
| CCCTGTGCATGACTGAGGCT+TGG | - | chr3_4:52781304-52781323 | None:intergenic | 60.0% | |
| CCCTGTGCATGACTGAGGCT+TGG | - | chr3_4:52781304-52781323 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 52780572 | 52782966 | 52780572 | ID=Msa0506420;Name=Msa0506420 |
| chr3_4 | mRNA | 52780572 | 52782966 | 52780572 | ID=Msa0506420-mRNA-1;Parent=Msa0506420;Name=Msa0506420-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.25|0.4|1|1|1|5|0|561 |
| chr3_4 | exon | 52780572 | 52781436 | 52780572 | ID=Msa0506420-mRNA-1:exon:11553;Parent=Msa0506420-mRNA-1 |
| chr3_4 | exon | 52781781 | 52781944 | 52781781 | ID=Msa0506420-mRNA-1:exon:11554;Parent=Msa0506420-mRNA-1 |
| chr3_4 | exon | 52782064 | 52782144 | 52782064 | ID=Msa0506420-mRNA-1:exon:11555;Parent=Msa0506420-mRNA-1 |
| chr3_4 | exon | 52782235 | 52782309 | 52782235 | ID=Msa0506420-mRNA-1:exon:11556;Parent=Msa0506420-mRNA-1 |
| chr3_4 | exon | 52782466 | 52782966 | 52782466 | ID=Msa0506420-mRNA-1:exon:11557;Parent=Msa0506420-mRNA-1 |
| chr3_4 | CDS | 52780572 | 52781436 | 52780572 | ID=Msa0506420-mRNA-1:cds;Parent=Msa0506420-mRNA-1 |
| chr3_4 | CDS | 52781781 | 52781944 | 52781781 | ID=Msa0506420-mRNA-1:cds;Parent=Msa0506420-mRNA-1 |
| chr3_4 | CDS | 52782064 | 52782144 | 52782064 | ID=Msa0506420-mRNA-1:cds;Parent=Msa0506420-mRNA-1 |
| chr3_4 | CDS | 52782235 | 52782309 | 52782235 | ID=Msa0506420-mRNA-1:cds;Parent=Msa0506420-mRNA-1 |
| chr3_4 | CDS | 52782466 | 52782966 | 52782466 | ID=Msa0506420-mRNA-1:cds;Parent=Msa0506420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
