AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0508390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0508390 MtrunA17_Chr3g0112751 88.858 359 18 9 1 353 1 343 0.0 562
Msa0508390 MtrunA17_Chr5g0436151 44.865 370 146 15 20 353 15 362 2.34e-69 221
Msa0508390 MtrunA17_Chr7g0240771 28.052 385 185 17 23 353 44 390 7.18e-17 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0508390 AT2G39870.1 32.955 352 180 14 14 353 23 330 4.01e-26 107
Msa0508390 AT3G55690.1 30.314 287 131 10 12 286 14 243 2.06e-11 64.3

Find 128 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAGGTTGTTTAGTTTAT+AGG 0.198373 3_4:-56349769 None:intergenic
TTTGAAGCAACAGCTATTAA+TGG 0.227596 3_4:+56351182 Msa0508390:CDS
TGAAAGAATAGTAGTAGTTT+AGG 0.233511 3_4:+56351482 Msa0508390:three_prime_UTR
GACTTGGTGGATCCGGGTTT+AGG 0.260261 3_4:+56350651 Msa0508390:CDS
TGTTGCTGAACCAACCAATT+AGG 0.286843 3_4:-56350512 None:intergenic
AGGCGGATCTTCTGTGAAAA+AGG 0.288494 3_4:+56350685 Msa0508390:CDS
AGAGAAGAGAGAGGAAAATA+AGG 0.293959 3_4:-56349724 None:intergenic
TTAAAATTTACTGCCTTTGC+CGG 0.304570 3_4:-56350931 None:intergenic
TGGATCCGGGTTTAGGGTTC+CGG 0.307220 3_4:+56350658 Msa0508390:CDS
GAAAGAATAGTAGTAGTTTA+GGG 0.310584 3_4:+56351483 Msa0508390:three_prime_UTR
GTTAAGGTTCGGAGATAATA+AGG 0.328259 3_4:-56349815 None:intergenic
TGTTTGAGACAGATGTTATA+AGG 0.332193 3_4:-56349791 None:intergenic
ACTTGGTGGATCCGGGTTTA+GGG 0.332637 3_4:+56350652 Msa0508390:CDS
AACCAAAGGGTACCACAATA+TGG 0.335300 3_4:+56350629 Msa0508390:CDS
ATGAAATTCAATAGTGTGTT+TGG 0.345176 3_4:+56351378 Msa0508390:three_prime_UTR
AGACAGATGTTATAAGGTTA+AGG 0.350726 3_4:-56349785 None:intergenic
TCAACAAACGGCGCCGTTAC+AGG 0.361200 3_4:-56350225 None:intergenic
AGCAACGGTTCTGGTGGTTC+AGG 0.367196 3_4:+56350165 Msa0508390:CDS
TACTGTTGATTCAGAATAGA+AGG 0.369252 3_4:+56350537 Msa0508390:CDS
GGGTTTAGGGTTCCGGTTCA+AGG 0.370295 3_4:+56350665 Msa0508390:CDS
CAATATGGACTTGGTGGATC+CGG 0.372902 3_4:+56350644 Msa0508390:CDS
GTCCATATTGTGGTACCCTT+TGG 0.375498 3_4:-56350631 None:intergenic
GAAGAAGAAAGTTTCTTTGC+TGG 0.377134 3_4:+56350000 Msa0508390:CDS
TTGTGTACCTGTTATGTTAC+CGG 0.379492 3_4:+56350912 Msa0508390:CDS
AAAGAGAACAGAATCCTAAT+TGG 0.379766 3_4:+56350498 Msa0508390:CDS
CTTTGTTGTAGATTTGTTGT+TGG 0.380253 3_4:+56351143 Msa0508390:intron
GAGTTCGACGCCGCCGCGTT+CGG 0.384076 3_4:+56349886 Msa0508390:CDS
TTGACATGTTTCTCGTGTTA+AGG 0.391462 3_4:-56349831 None:intergenic
GCCTTTGCCGGTAACATAAC+AGG 0.394628 3_4:-56350919 None:intergenic
TTGAAGAAGAAATGAATTAG+TGG 0.399493 3_4:+56351306 Msa0508390:three_prime_UTR
CGGCGCCGTTTGTTGACCCT+TGG 0.408598 3_4:+56350232 Msa0508390:CDS
GGATGTGAAGAAGGGAAGTA+AGG 0.418442 3_4:-56349697 None:intergenic
TTCTGTTGAGTCTGTTAGCT+CGG 0.423591 3_4:-56349965 None:intergenic
CTGCTGCAGGTCAAGTTGCT+AGG 0.433640 3_4:+56350268 Msa0508390:CDS
AGTGGAATCGGTAGCTGGTC+TGG 0.438883 3_4:+56350138 Msa0508390:CDS
ACAGAAGATCCGCCTTGAAC+CGG 0.442156 3_4:-56350677 None:intergenic
TCTGGTCGAAGCAACGGTTC+TGG 0.445072 3_4:+56350156 Msa0508390:CDS
ATGTTTCTCGTGTTAAGGTT+CGG 0.449585 3_4:-56349826 None:intergenic
ATGATGGTGTAACATTGATC+AGG 0.449605 3_4:+56351640 Msa0508390:three_prime_UTR
AAGAAGAAAGTTTCTTTGCT+GGG 0.458030 3_4:+56350001 Msa0508390:CDS
CGCTGAGTGGAATCGGTAGC+TGG 0.458603 3_4:+56350133 Msa0508390:CDS
CAGAATAGAAGGCGTGAACT+TGG 0.459327 3_4:+56350548 Msa0508390:CDS
AGCTCGGTTAACGATTCAAC+GGG 0.466584 3_4:-56349949 None:intergenic
TAAGGTAGTGGATGTGAAGA+AGG 0.468516 3_4:-56349706 None:intergenic
GGCGCCGTTTGTTGACCCTT+GGG 0.473839 3_4:+56350233 Msa0508390:CDS
GTTCTTTCATGTAATGGTGA+TGG 0.474505 3_4:+56351600 Msa0508390:three_prime_UTR
TAAATATAATTAAGAAAAGA+AGG 0.475231 3_4:-56351520 None:intergenic
CAGTCGACGCTGAGTGGAAT+CGG 0.479339 3_4:+56350126 Msa0508390:CDS
AATTGCTTTGGCAGATTGGG+TGG 0.484587 3_4:+56351683 Msa0508390:three_prime_UTR
TTCTTTCATGTAATGGTGAT+GGG 0.484717 3_4:+56351601 Msa0508390:three_prime_UTR
TCAGATTCACGCAAGAGAAC+TGG 0.486995 3_4:+56350770 Msa0508390:CDS
ACCTGTTATGTTACCGGCAA+AGG 0.487325 3_4:+56350918 Msa0508390:CDS
GAGAGAGGAAAATAAGGTAG+TGG 0.489280 3_4:-56349718 None:intergenic
GTGGTTGAGTAGTAACATTT+CGG 0.489599 3_4:-56350969 None:intergenic
AATATGGACTTGGTGGATCC+GGG 0.494001 3_4:+56350645 Msa0508390:CDS
CAAGCTTTACCATGTTAACA+TGG 0.497143 3_4:-56350320 None:intergenic
AACGCGGCGGCGTCGAACTC+AGG 0.497429 3_4:-56349883 None:intergenic
GTTGCAAAATCCAGCTCTTG+TGG 0.497465 3_4:+56351408 Msa0508390:three_prime_UTR
GTGAAAACTCGTGACGTGGC+AGG 0.498079 3_4:+56350096 Msa0508390:CDS
GTAACATTGATCAGGTTTCA+AGG 0.504919 3_4:+56351648 Msa0508390:three_prime_UTR
GAAGAAGGGAAGTAAGGAGT+TGG 0.504930 3_4:-56349691 None:intergenic
CAGTGTGTTCTTTCATGTAA+TGG 0.514474 3_4:+56351594 Msa0508390:three_prime_UTR
GAAGCTATTTATGCTGCTGC+AGG 0.518449 3_4:+56350255 Msa0508390:CDS
AAGGTAGTGGATGTGAAGAA+GGG 0.521283 3_4:-56349705 None:intergenic
TTTCTGAGTTTCACGAAGAG+TGG 0.523179 3_4:-56350046 None:intergenic
AACTCGTAGGGGAACTCAGT+AGG 0.525794 3_4:-56349913 None:intergenic
ACTCGTAGGGGAACTCAGTA+GGG 0.530263 3_4:-56349912 None:intergenic
TCGTGTTCCGTCGCCTGTAA+CGG 0.531195 3_4:+56350212 Msa0508390:CDS
CTTTACCATGTTAACATGGG+TGG 0.535667 3_4:-56350316 None:intergenic
ACAGCTATTAATGGCACGGC+GGG 0.536791 3_4:+56351191 Msa0508390:CDS
GCTTCCCAAGGGTCAACAAA+CGG 0.540678 3_4:-56350237 None:intergenic
AGCTGGTCTGGTCGAAGCAA+CGG 0.542658 3_4:+56350150 Msa0508390:CDS
TTGTAGATTTGTTGTTGGCA+AGG 0.543769 3_4:+56351148 Msa0508390:intron
TGAAAACTCGTGACGTGGCA+GGG 0.545616 3_4:+56350097 Msa0508390:CDS
GTACCACAATATGGACTTGG+TGG 0.548213 3_4:+56350638 Msa0508390:CDS
GAAGATAGTTCAAACTCGTA+GGG 0.548706 3_4:-56349925 None:intergenic
GGAACACGAGAGTTTCCGTT+AGG 0.548981 3_4:-56350198 None:intergenic
AGAACAGAATCCTAATTGGT+TGG 0.552343 3_4:+56350502 Msa0508390:CDS
TGTAATGGTGATGGGACTGA+TGG 0.553659 3_4:+56351609 Msa0508390:three_prime_UTR
GGTTCTGGTGGTTCAGGTGA+CGG 0.557520 3_4:+56350171 Msa0508390:CDS
TTTACCATGTTAACATGGGT+GGG 0.567466 3_4:-56350315 None:intergenic
AGGTAGACGAATTTCACAGC+TGG 0.574209 3_4:-56351223 None:intergenic
ATTAGATTGTTGTTCCGTGT+GGG 0.579315 3_4:+56350475 Msa0508390:CDS
GAATCTGAAGGTGTAGGAGT+AGG 0.582363 3_4:-56350755 None:intergenic
TATTAGATTGTTGTTCCGTG+TGG 0.582526 3_4:+56350474 Msa0508390:CDS
AACGGCGCCGTTACAGGCGA+CGG 0.583586 3_4:-56350219 None:intergenic
AACAAACTCAGCAAAACCAA+AGG 0.584698 3_4:+56350615 Msa0508390:CDS
ATTGCTTTGGCAGATTGGGT+GGG 0.585514 3_4:+56351684 Msa0508390:three_prime_UTR
ACTGATGGGTCAAGTTATGA+TGG 0.585663 3_4:+56351624 Msa0508390:three_prime_UTR
GGGTCCCACCCATGTTAACA+TGG 0.585876 3_4:+56350311 Msa0508390:CDS
TTGCGTGAATCTGAAGGTGT+AGG 0.588785 3_4:-56350761 None:intergenic
TGAGTTTGTTGAAAAGACAA+AGG 0.589411 3_4:-56350602 None:intergenic
GTTCTCTTGCGTGAATCTGA+AGG 0.590027 3_4:-56350767 None:intergenic
GAATAGTAGTAGTTTAGGGA+AGG 0.590563 3_4:+56351487 Msa0508390:three_prime_UTR
GCGGCGGCGTCGAACTCAGG+TGG 0.592688 3_4:-56349880 None:intergenic
ACAAACTCAGCAAAACCAAA+GGG 0.595837 3_4:+56350616 Msa0508390:CDS
AGTCAATAAGTCCACTCTTG+AGG 0.596671 3_4:-56351243 None:intergenic
TCGCCTCAGTCGACGCTGAG+TGG 0.597077 3_4:+56350120 Msa0508390:CDS
TGAAGATAGTTCAAACTCGT+AGG 0.600927 3_4:-56349926 None:intergenic
TTTAAAATGAACAACTCAGT+GGG 0.601360 3_4:+56350291 Msa0508390:CDS
TCAGGTGACGGAAGTCCTAA+CGG 0.605315 3_4:+56350183 Msa0508390:CDS
GGTCGAAGCAACGGTTCTGG+TGG 0.609457 3_4:+56350159 Msa0508390:CDS
TAACACGAGAAACATGTCAA+TGG 0.609980 3_4:+56349834 Msa0508390:exon
CTTCGTGAAACTCAGAAACA+AGG 0.613799 3_4:+56350051 Msa0508390:CDS
GCAGCATAAATAGCTTCCCA+AGG 0.616019 3_4:-56350249 None:intergenic
AGCAACAGCTATTAATGGCA+CGG 0.616118 3_4:+56351187 Msa0508390:CDS
AGGGTACCACAATATGGACT+TGG 0.616452 3_4:+56350635 Msa0508390:CDS
TAGCTCGGTTAACGATTCAA+CGG 0.622280 3_4:-56349950 None:intergenic
TGGCTACAAAACAACCACTC+TGG 0.628193 3_4:+56349854 Msa0508390:CDS
TACCGTGAAAACTCGTGACG+TGG 0.639775 3_4:+56350092 Msa0508390:CDS
GTAATGGTGATGGGACTGAT+GGG 0.641658 3_4:+56351610 Msa0508390:three_prime_UTR
ATTCTGTTCTCTTTCCCACA+CGG 0.643579 3_4:-56350489 None:intergenic
TTTAGGGTTCCGGTTCAAGG+CGG 0.648777 3_4:+56350668 Msa0508390:CDS
AAAGACACAAATATTCTACA+TGG 0.648788 3_4:+56351275 Msa0508390:three_prime_UTR
AAATTCGTCTACCTCAAGAG+TGG 0.655673 3_4:+56351232 Msa0508390:CDS
AAGCTTTACCATGTTAACAT+GGG 0.657708 3_4:-56350319 None:intergenic
CTCAGTAGGGAAACCGAACG+CGG 0.658559 3_4:-56349899 None:intergenic
TTGAACCGGAACCCTAAACC+CGG 0.670681 3_4:-56350663 None:intergenic
GTTTAAAATGAACAACTCAG+TGG 0.672558 3_4:+56350290 Msa0508390:CDS
GATCCACCAAGTCCATATTG+TGG 0.679927 3_4:-56350641 None:intergenic
ATTCCACTCAGCGTCGACTG+AGG 0.684494 3_4:-56350123 None:intergenic
CGTGAAACTCAGAAACAAGG+AGG 0.686703 3_4:+56350054 Msa0508390:CDS
CAGCATAAATAGCTTCCCAA+GGG 0.691700 3_4:-56350248 None:intergenic
AAGATAGTTCAAACTCGTAG+GGG 0.691856 3_4:-56349924 None:intergenic
AACAGCTATTAATGGCACGG+CGG 0.707244 3_4:+56351190 Msa0508390:CDS
AACTCAGGTGGAGACCAGAG+TGG 0.722487 3_4:-56349868 None:intergenic
AGTAGGGAAACCGAACGCGG+CGG 0.731552 3_4:-56349896 None:intergenic
GGTGTAGTATCATAATGACG+AGG 0.759239 3_4:-56350734 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATATAATTAAGAAAAGA+AGG - chr3_4:56351523-56351542 None:intergenic 10.0%
!! TAAATATAATTAAGAAAAGA+AGG - chr3_4:56351523-56351542 None:intergenic 10.0%
!!! TTGTTTTTAACTTATTATGT+TGG + chr3_4:56351115-56351134 Msa0508390:intron 15.0%
!!! TTGTTTTTAACTTATTATGT+TGG + chr3_4:56351115-56351134 Msa0508390:intron 15.0%
!! AAAAAATGGTATTTAGAGAA+CGG - chr3_4:56350821-56350840 None:intergenic 20.0%
!!! TTCTCTAAATACCATTTTTT+TGG + chr3_4:56350821-56350840 Msa0508390:intron 20.0%
!! GATTGAAAATACCAAAAAAA+TGG - chr3_4:56350835-56350854 None:intergenic 20.0%
!!! GTTCTATTTTGATTTTGATT+AGG + chr3_4:56350889-56350908 Msa0508390:intron 20.0%
!!! AATGTTTTTGCTAATGATTA+TGG + chr3_4:56351000-56351019 Msa0508390:CDS 20.0%
!!! TTTGTTGTCATATTCAAAAA+TGG + chr3_4:56351334-56351353 Msa0508390:intron 20.0%
!!! CATATTCAAAAATGGTATTT+TGG + chr3_4:56351342-56351361 Msa0508390:intron 20.0%
!! TTAAGAAAAGAAGGAAAAAA+AGG - chr3_4:56351514-56351533 None:intergenic 20.0%
!! AAAAAATGGTATTTAGAGAA+CGG - chr3_4:56350821-56350840 None:intergenic 20.0%
!!! TTCTCTAAATACCATTTTTT+TGG + chr3_4:56350821-56350840 Msa0508390:intron 20.0%
!! GATTGAAAATACCAAAAAAA+TGG - chr3_4:56350835-56350854 None:intergenic 20.0%
!!! GTTCTATTTTGATTTTGATT+AGG + chr3_4:56350889-56350908 Msa0508390:intron 20.0%
!!! AATGTTTTTGCTAATGATTA+TGG + chr3_4:56351000-56351019 Msa0508390:CDS 20.0%
!!! TTTGTTGTCATATTCAAAAA+TGG + chr3_4:56351334-56351353 Msa0508390:intron 20.0%
!!! CATATTCAAAAATGGTATTT+TGG + chr3_4:56351342-56351361 Msa0508390:intron 20.0%
!! TTAAGAAAAGAAGGAAAAAA+AGG - chr3_4:56351514-56351533 None:intergenic 20.0%
!!! AAGACAATCTGCTTTTATTA+AGG - chr3_4:56349658-56349677 None:intergenic 25.0%
!! GTTAAGGTTGTTTAGTTTAT+AGG - chr3_4:56349772-56349791 None:intergenic 25.0%
!! TTTAAAATGAACAACTCAGT+GGG + chr3_4:56350291-56350310 Msa0508390:CDS 25.0%
!!! TTTGTTTTTGTTTTCTGTGT+AGG + chr3_4:56350415-56350434 Msa0508390:intron 25.0%
! AAAAATGGTATTTAGAGAAC+GGG - chr3_4:56350820-56350839 None:intergenic 25.0%
! AGACACAATTAAACCAAAAA+GGG - chr3_4:56350857-56350876 None:intergenic 25.0%
! TCATGGTAGATATGTTAAAA+TGG - chr3_4:56351062-56351081 None:intergenic 25.0%
! ATATGCTTAGTAAAACTTCT+TGG + chr3_4:56351089-56351108 Msa0508390:intron 25.0%
!! GTAGAATATTTGTGTCTTTT+TGG - chr3_4:56351274-56351293 None:intergenic 25.0%
! AAAGACACAAATATTCTACA+TGG + chr3_4:56351275-56351294 Msa0508390:three_prime_UTR 25.0%
! TTGAAGAAGAAATGAATTAG+TGG + chr3_4:56351306-56351325 Msa0508390:three_prime_UTR 25.0%
! ATGAAATTCAATAGTGTGTT+TGG + chr3_4:56351378-56351397 Msa0508390:three_prime_UTR 25.0%
!!! AAAAAGATTGTACTAGCTTT+TGG + chr3_4:56351434-56351453 Msa0508390:three_prime_UTR 25.0%
!!! AAAAGATTGTACTAGCTTTT+GGG + chr3_4:56351435-56351454 Msa0508390:three_prime_UTR 25.0%
! TGAAAGAATAGTAGTAGTTT+AGG + chr3_4:56351482-56351501 Msa0508390:three_prime_UTR 25.0%
! GAAAGAATAGTAGTAGTTTA+GGG + chr3_4:56351483-56351502 Msa0508390:three_prime_UTR 25.0%
!!! TTTTATTAAGGTTTGAAGCT+AGG - chr3_4:56349646-56349665 None:intergenic 25.0%
!!! AAGACAATCTGCTTTTATTA+AGG - chr3_4:56349658-56349677 None:intergenic 25.0%
!! GTTAAGGTTGTTTAGTTTAT+AGG - chr3_4:56349772-56349791 None:intergenic 25.0%
!! TTTAAAATGAACAACTCAGT+GGG + chr3_4:56350291-56350310 Msa0508390:CDS 25.0%
!!! TTTGTTTTTGTTTTCTGTGT+AGG + chr3_4:56350415-56350434 Msa0508390:intron 25.0%
! AAAAATGGTATTTAGAGAAC+GGG - chr3_4:56350820-56350839 None:intergenic 25.0%
! AGACACAATTAAACCAAAAA+GGG - chr3_4:56350857-56350876 None:intergenic 25.0%
! TCATGGTAGATATGTTAAAA+TGG - chr3_4:56351062-56351081 None:intergenic 25.0%
! ATATGCTTAGTAAAACTTCT+TGG + chr3_4:56351089-56351108 Msa0508390:intron 25.0%
!! GTAGAATATTTGTGTCTTTT+TGG - chr3_4:56351274-56351293 None:intergenic 25.0%
! AAAGACACAAATATTCTACA+TGG + chr3_4:56351275-56351294 Msa0508390:three_prime_UTR 25.0%
! TTGAAGAAGAAATGAATTAG+TGG + chr3_4:56351306-56351325 Msa0508390:three_prime_UTR 25.0%
! ATGAAATTCAATAGTGTGTT+TGG + chr3_4:56351378-56351397 Msa0508390:three_prime_UTR 25.0%
!!! AAAAAGATTGTACTAGCTTT+TGG + chr3_4:56351434-56351453 Msa0508390:three_prime_UTR 25.0%
!!! AAAAGATTGTACTAGCTTTT+GGG + chr3_4:56351435-56351454 Msa0508390:three_prime_UTR 25.0%
! TGAAAGAATAGTAGTAGTTT+AGG + chr3_4:56351482-56351501 Msa0508390:three_prime_UTR 25.0%
! GAAAGAATAGTAGTAGTTTA+GGG + chr3_4:56351483-56351502 Msa0508390:three_prime_UTR 25.0%
AGACAGATGTTATAAGGTTA+AGG - chr3_4:56349788-56349807 None:intergenic 30.0%
! TGTTTGAGACAGATGTTATA+AGG - chr3_4:56349794-56349813 None:intergenic 30.0%
AAGAAGAAAGTTTCTTTGCT+GGG + chr3_4:56350001-56350020 Msa0508390:CDS 30.0%
! GTTTAAAATGAACAACTCAG+TGG + chr3_4:56350290-56350309 Msa0508390:CDS 30.0%
AAGCTTTACCATGTTAACAT+GGG - chr3_4:56350322-56350341 None:intergenic 30.0%
AAAGAGAACAGAATCCTAAT+TGG + chr3_4:56350498-56350517 Msa0508390:CDS 30.0%
!! TACTGTTGATTCAGAATAGA+AGG + chr3_4:56350537-56350556 Msa0508390:CDS 30.0%
!! TGAGTTTGTTGAAAAGACAA+AGG - chr3_4:56350605-56350624 None:intergenic 30.0%
AAAATGGTATTTAGAGAACG+GGG - chr3_4:56350819-56350838 None:intergenic 30.0%
! TGGTATTTTCAATCCCTTTT+TGG + chr3_4:56350841-56350860 Msa0508390:intron 30.0%
GAGACACAATTAAACCAAAA+AGG - chr3_4:56350858-56350877 None:intergenic 30.0%
TTAAAATTTACTGCCTTTGC+CGG - chr3_4:56350934-56350953 None:intergenic 30.0%
!! CTTTGTTGTAGATTTGTTGT+TGG + chr3_4:56351143-56351162 Msa0508390:intron 30.0%
! TTTGAAGCAACAGCTATTAA+TGG + chr3_4:56351182-56351201 Msa0508390:CDS 30.0%
TTCTTTCATGTAATGGTGAT+GGG + chr3_4:56351601-56351620 Msa0508390:three_prime_UTR 30.0%
CAAGTTAGCAAAAATTGCTT+TGG + chr3_4:56351671-56351690 Msa0508390:three_prime_UTR 30.0%
AAAAATTGCTTTGGCAGATT+GGG + chr3_4:56351680-56351699 Msa0508390:three_prime_UTR 30.0%
AGACAGATGTTATAAGGTTA+AGG - chr3_4:56349788-56349807 None:intergenic 30.0%
! TGTTTGAGACAGATGTTATA+AGG - chr3_4:56349794-56349813 None:intergenic 30.0%
AAGAAGAAAGTTTCTTTGCT+GGG + chr3_4:56350001-56350020 Msa0508390:CDS 30.0%
! GTTTAAAATGAACAACTCAG+TGG + chr3_4:56350290-56350309 Msa0508390:CDS 30.0%
AAGCTTTACCATGTTAACAT+GGG - chr3_4:56350322-56350341 None:intergenic 30.0%
AAAGAGAACAGAATCCTAAT+TGG + chr3_4:56350498-56350517 Msa0508390:CDS 30.0%
!! TACTGTTGATTCAGAATAGA+AGG + chr3_4:56350537-56350556 Msa0508390:CDS 30.0%
!! TGAGTTTGTTGAAAAGACAA+AGG - chr3_4:56350605-56350624 None:intergenic 30.0%
AAAATGGTATTTAGAGAACG+GGG - chr3_4:56350819-56350838 None:intergenic 30.0%
! TGGTATTTTCAATCCCTTTT+TGG + chr3_4:56350841-56350860 Msa0508390:intron 30.0%
GAGACACAATTAAACCAAAA+AGG - chr3_4:56350858-56350877 None:intergenic 30.0%
TTAAAATTTACTGCCTTTGC+CGG - chr3_4:56350934-56350953 None:intergenic 30.0%
!! CTTTGTTGTAGATTTGTTGT+TGG + chr3_4:56351143-56351162 Msa0508390:intron 30.0%
! TTTGAAGCAACAGCTATTAA+TGG + chr3_4:56351182-56351201 Msa0508390:CDS 30.0%
TTCTTTCATGTAATGGTGAT+GGG + chr3_4:56351601-56351620 Msa0508390:three_prime_UTR 30.0%
CAAGTTAGCAAAAATTGCTT+TGG + chr3_4:56351671-56351690 Msa0508390:three_prime_UTR 30.0%
AAAAATTGCTTTGGCAGATT+GGG + chr3_4:56351680-56351699 Msa0508390:three_prime_UTR 30.0%
AGAGAAGAGAGAGGAAAATA+AGG - chr3_4:56349727-56349746 None:intergenic 35.0%
AAAAAGAGAAGAGAAGAGAG+AGG - chr3_4:56349736-56349755 None:intergenic 35.0%
GTTAAGGTTCGGAGATAATA+AGG - chr3_4:56349818-56349837 None:intergenic 35.0%
ATGTTTCTCGTGTTAAGGTT+CGG - chr3_4:56349829-56349848 None:intergenic 35.0%
TTGACATGTTTCTCGTGTTA+AGG - chr3_4:56349834-56349853 None:intergenic 35.0%
TAACACGAGAAACATGTCAA+TGG + chr3_4:56349834-56349853 Msa0508390:exon 35.0%
AAGATAGTTCAAACTCGTAG+GGG - chr3_4:56349927-56349946 None:intergenic 35.0%
GAAGATAGTTCAAACTCGTA+GGG - chr3_4:56349928-56349947 None:intergenic 35.0%
TGAAGATAGTTCAAACTCGT+AGG - chr3_4:56349929-56349948 None:intergenic 35.0%
GAAGAAGAAAGTTTCTTTGC+TGG + chr3_4:56350000-56350019 Msa0508390:CDS 35.0%
TTTACCATGTTAACATGGGT+GGG - chr3_4:56350318-56350337 None:intergenic 35.0%
CAAGCTTTACCATGTTAACA+TGG - chr3_4:56350323-56350342 None:intergenic 35.0%
! TTGTTTTCTGTGTAGGTCAA+TGG + chr3_4:56350422-56350441 Msa0508390:intron 35.0%
! TATTAGATTGTTGTTCCGTG+TGG + chr3_4:56350474-56350493 Msa0508390:CDS 35.0%
! ATTAGATTGTTGTTCCGTGT+GGG + chr3_4:56350475-56350494 Msa0508390:CDS 35.0%
AGAACAGAATCCTAATTGGT+TGG + chr3_4:56350502-56350521 Msa0508390:CDS 35.0%
AACAAACTCAGCAAAACCAA+AGG + chr3_4:56350615-56350634 Msa0508390:CDS 35.0%
ACAAACTCAGCAAAACCAAA+GGG + chr3_4:56350616-56350635 Msa0508390:CDS 35.0%
TCTTCTGTGAAAAAGGTTTC+CGG + chr3_4:56350692-56350711 Msa0508390:CDS 35.0%
TTGTGTACCTGTTATGTTAC+CGG + chr3_4:56350912-56350931 Msa0508390:CDS 35.0%
GTGGTTGAGTAGTAACATTT+CGG - chr3_4:56350972-56350991 None:intergenic 35.0%
CTAAGCATATGTTTGTCTCA+TGG - chr3_4:56351079-56351098 None:intergenic 35.0%
!! TTGTAGATTTGTTGTTGGCA+AGG + chr3_4:56351148-56351167 Msa0508390:intron 35.0%
!!! TCTTTTTTTTCCACAAGAGC+TGG - chr3_4:56351421-56351440 None:intergenic 35.0%
GAATAGTAGTAGTTTAGGGA+AGG + chr3_4:56351487-56351506 Msa0508390:three_prime_UTR 35.0%
CAGTGTGTTCTTTCATGTAA+TGG + chr3_4:56351594-56351613 Msa0508390:three_prime_UTR 35.0%
GTTCTTTCATGTAATGGTGA+TGG + chr3_4:56351600-56351619 Msa0508390:three_prime_UTR 35.0%
! ATGATGGTGTAACATTGATC+AGG + chr3_4:56351640-56351659 Msa0508390:three_prime_UTR 35.0%
GTAACATTGATCAGGTTTCA+AGG + chr3_4:56351648-56351667 Msa0508390:three_prime_UTR 35.0%
CAAAAATTGCTTTGGCAGAT+TGG + chr3_4:56351679-56351698 Msa0508390:three_prime_UTR 35.0%
AGAGAAGAGAGAGGAAAATA+AGG - chr3_4:56349727-56349746 None:intergenic 35.0%
AAAAAGAGAAGAGAAGAGAG+AGG - chr3_4:56349736-56349755 None:intergenic 35.0%
GTTAAGGTTCGGAGATAATA+AGG - chr3_4:56349818-56349837 None:intergenic 35.0%
ATGTTTCTCGTGTTAAGGTT+CGG - chr3_4:56349829-56349848 None:intergenic 35.0%
TTGACATGTTTCTCGTGTTA+AGG - chr3_4:56349834-56349853 None:intergenic 35.0%
TAACACGAGAAACATGTCAA+TGG + chr3_4:56349834-56349853 Msa0508390:exon 35.0%
AAGATAGTTCAAACTCGTAG+GGG - chr3_4:56349927-56349946 None:intergenic 35.0%
GAAGATAGTTCAAACTCGTA+GGG - chr3_4:56349928-56349947 None:intergenic 35.0%
TGAAGATAGTTCAAACTCGT+AGG - chr3_4:56349929-56349948 None:intergenic 35.0%
GAAGAAGAAAGTTTCTTTGC+TGG + chr3_4:56350000-56350019 Msa0508390:CDS 35.0%
TTTACCATGTTAACATGGGT+GGG - chr3_4:56350318-56350337 None:intergenic 35.0%
CAAGCTTTACCATGTTAACA+TGG - chr3_4:56350323-56350342 None:intergenic 35.0%
! TTGTTTTCTGTGTAGGTCAA+TGG + chr3_4:56350422-56350441 Msa0508390:intron 35.0%
! TATTAGATTGTTGTTCCGTG+TGG + chr3_4:56350474-56350493 Msa0508390:CDS 35.0%
! ATTAGATTGTTGTTCCGTGT+GGG + chr3_4:56350475-56350494 Msa0508390:CDS 35.0%
AGAACAGAATCCTAATTGGT+TGG + chr3_4:56350502-56350521 Msa0508390:CDS 35.0%
AACAAACTCAGCAAAACCAA+AGG + chr3_4:56350615-56350634 Msa0508390:CDS 35.0%
ACAAACTCAGCAAAACCAAA+GGG + chr3_4:56350616-56350635 Msa0508390:CDS 35.0%
TCTTCTGTGAAAAAGGTTTC+CGG + chr3_4:56350692-56350711 Msa0508390:CDS 35.0%
TTGTGTACCTGTTATGTTAC+CGG + chr3_4:56350912-56350931 Msa0508390:CDS 35.0%
GTGGTTGAGTAGTAACATTT+CGG - chr3_4:56350972-56350991 None:intergenic 35.0%
CTAAGCATATGTTTGTCTCA+TGG - chr3_4:56351079-56351098 None:intergenic 35.0%
!! TTGTAGATTTGTTGTTGGCA+AGG + chr3_4:56351148-56351167 Msa0508390:intron 35.0%
!!! TCTTTTTTTTCCACAAGAGC+TGG - chr3_4:56351421-56351440 None:intergenic 35.0%
GAATAGTAGTAGTTTAGGGA+AGG + chr3_4:56351487-56351506 Msa0508390:three_prime_UTR 35.0%
CAGTGTGTTCTTTCATGTAA+TGG + chr3_4:56351594-56351613 Msa0508390:three_prime_UTR 35.0%
GTTCTTTCATGTAATGGTGA+TGG + chr3_4:56351600-56351619 Msa0508390:three_prime_UTR 35.0%
! ATGATGGTGTAACATTGATC+AGG + chr3_4:56351640-56351659 Msa0508390:three_prime_UTR 35.0%
GTAACATTGATCAGGTTTCA+AGG + chr3_4:56351648-56351667 Msa0508390:three_prime_UTR 35.0%
CAAAAATTGCTTTGGCAGAT+TGG + chr3_4:56351679-56351698 Msa0508390:three_prime_UTR 35.0%
!! AAGGTAGTGGATGTGAAGAA+GGG - chr3_4:56349708-56349727 None:intergenic 40.0%
!! TAAGGTAGTGGATGTGAAGA+AGG - chr3_4:56349709-56349728 None:intergenic 40.0%
GAGAGAGGAAAATAAGGTAG+TGG - chr3_4:56349721-56349740 None:intergenic 40.0%
TAGCTCGGTTAACGATTCAA+CGG - chr3_4:56349953-56349972 None:intergenic 40.0%
TTCTGTTGAGTCTGTTAGCT+CGG - chr3_4:56349968-56349987 None:intergenic 40.0%
TTTCTGAGTTTCACGAAGAG+TGG - chr3_4:56350049-56350068 None:intergenic 40.0%
CTTCGTGAAACTCAGAAACA+AGG + chr3_4:56350051-56350070 Msa0508390:CDS 40.0%
CAGCATAAATAGCTTCCCAA+GGG - chr3_4:56350251-56350270 None:intergenic 40.0%
CTTTACCATGTTAACATGGG+TGG - chr3_4:56350319-56350338 None:intergenic 40.0%
ATTCTGTTCTCTTTCCCACA+CGG - chr3_4:56350492-56350511 None:intergenic 40.0%
TGTTGCTGAACCAACCAATT+AGG - chr3_4:56350515-56350534 None:intergenic 40.0%
!! AACCAAAGGGTACCACAATA+TGG + chr3_4:56350629-56350648 Msa0508390:CDS 40.0%
TAAAAACACACCAGTTCCAC+CGG - chr3_4:56350714-56350733 None:intergenic 40.0%
GGTGTAGTATCATAATGACG+AGG - chr3_4:56350737-56350756 None:intergenic 40.0%
TTTAGAGAACGGGGTAAAAC+TGG - chr3_4:56350810-56350829 None:intergenic 40.0%
GCAAAAACATTAGTCAAGCG+TGG - chr3_4:56350991-56351010 None:intergenic 40.0%
AGCAACAGCTATTAATGGCA+CGG + chr3_4:56351187-56351206 Msa0508390:CDS 40.0%
AAATTCGTCTACCTCAAGAG+TGG + chr3_4:56351232-56351251 Msa0508390:CDS 40.0%
AGTCAATAAGTCCACTCTTG+AGG - chr3_4:56351246-56351265 None:intergenic 40.0%
!!! TTGTACTAGCTTTTGGGATC+TGG + chr3_4:56351441-56351460 Msa0508390:three_prime_UTR 40.0%
! ACTGATGGGTCAAGTTATGA+TGG + chr3_4:56351624-56351643 Msa0508390:three_prime_UTR 40.0%
!! AAGGTAGTGGATGTGAAGAA+GGG - chr3_4:56349708-56349727 None:intergenic 40.0%
!! TAAGGTAGTGGATGTGAAGA+AGG - chr3_4:56349709-56349728 None:intergenic 40.0%
GAGAGAGGAAAATAAGGTAG+TGG - chr3_4:56349721-56349740 None:intergenic 40.0%
TAGCTCGGTTAACGATTCAA+CGG - chr3_4:56349953-56349972 None:intergenic 40.0%
TTCTGTTGAGTCTGTTAGCT+CGG - chr3_4:56349968-56349987 None:intergenic 40.0%
TTTCTGAGTTTCACGAAGAG+TGG - chr3_4:56350049-56350068 None:intergenic 40.0%
CTTCGTGAAACTCAGAAACA+AGG + chr3_4:56350051-56350070 Msa0508390:CDS 40.0%
CAGCATAAATAGCTTCCCAA+GGG - chr3_4:56350251-56350270 None:intergenic 40.0%
CTTTACCATGTTAACATGGG+TGG - chr3_4:56350319-56350338 None:intergenic 40.0%
ATTCTGTTCTCTTTCCCACA+CGG - chr3_4:56350492-56350511 None:intergenic 40.0%
TGTTGCTGAACCAACCAATT+AGG - chr3_4:56350515-56350534 None:intergenic 40.0%
!! AACCAAAGGGTACCACAATA+TGG + chr3_4:56350629-56350648 Msa0508390:CDS 40.0%
TAAAAACACACCAGTTCCAC+CGG - chr3_4:56350714-56350733 None:intergenic 40.0%
GGTGTAGTATCATAATGACG+AGG - chr3_4:56350737-56350756 None:intergenic 40.0%
TTTAGAGAACGGGGTAAAAC+TGG - chr3_4:56350810-56350829 None:intergenic 40.0%
GCAAAAACATTAGTCAAGCG+TGG - chr3_4:56350991-56351010 None:intergenic 40.0%
AGCAACAGCTATTAATGGCA+CGG + chr3_4:56351187-56351206 Msa0508390:CDS 40.0%
AAATTCGTCTACCTCAAGAG+TGG + chr3_4:56351232-56351251 Msa0508390:CDS 40.0%
AGTCAATAAGTCCACTCTTG+AGG - chr3_4:56351246-56351265 None:intergenic 40.0%
!!! TTGTACTAGCTTTTGGGATC+TGG + chr3_4:56351441-56351460 Msa0508390:three_prime_UTR 40.0%
! ACTGATGGGTCAAGTTATGA+TGG + chr3_4:56351624-56351643 Msa0508390:three_prime_UTR 40.0%
GAAGAAGGGAAGTAAGGAGT+TGG - chr3_4:56349694-56349713 None:intergenic 45.0%
GGATGTGAAGAAGGGAAGTA+AGG - chr3_4:56349700-56349719 None:intergenic 45.0%
TGGCTACAAAACAACCACTC+TGG + chr3_4:56349854-56349873 Msa0508390:CDS 45.0%
AGCTCGGTTAACGATTCAAC+GGG - chr3_4:56349952-56349971 None:intergenic 45.0%
CGTGAAACTCAGAAACAAGG+AGG + chr3_4:56350054-56350073 Msa0508390:CDS 45.0%
GCAGCATAAATAGCTTCCCA+AGG - chr3_4:56350252-56350271 None:intergenic 45.0%
GAAGCTATTTATGCTGCTGC+AGG + chr3_4:56350255-56350274 Msa0508390:CDS 45.0%
! CAGAATAGAAGGCGTGAACT+TGG + chr3_4:56350548-56350567 Msa0508390:CDS 45.0%
GTCCATATTGTGGTACCCTT+TGG - chr3_4:56350634-56350653 None:intergenic 45.0%
! AGGGTACCACAATATGGACT+TGG + chr3_4:56350635-56350654 Msa0508390:CDS 45.0%
GTACCACAATATGGACTTGG+TGG + chr3_4:56350638-56350657 Msa0508390:CDS 45.0%
GATCCACCAAGTCCATATTG+TGG - chr3_4:56350644-56350663 None:intergenic 45.0%
!! CAATATGGACTTGGTGGATC+CGG + chr3_4:56350644-56350663 Msa0508390:CDS 45.0%
!! AATATGGACTTGGTGGATCC+GGG + chr3_4:56350645-56350664 Msa0508390:CDS 45.0%
AGGCGGATCTTCTGTGAAAA+AGG + chr3_4:56350685-56350704 Msa0508390:CDS 45.0%
TCTGTGAAAAAGGTTTCCGG+TGG + chr3_4:56350695-56350714 Msa0508390:CDS 45.0%
AAAAAGGTTTCCGGTGGAAC+TGG + chr3_4:56350701-56350720 Msa0508390:CDS 45.0%
! GAATCTGAAGGTGTAGGAGT+AGG - chr3_4:56350758-56350777 None:intergenic 45.0%
! TTGCGTGAATCTGAAGGTGT+AGG - chr3_4:56350764-56350783 None:intergenic 45.0%
GTTCTCTTGCGTGAATCTGA+AGG - chr3_4:56350770-56350789 None:intergenic 45.0%
TCAGATTCACGCAAGAGAAC+TGG + chr3_4:56350770-56350789 Msa0508390:CDS 45.0%
ACCTGTTATGTTACCGGCAA+AGG + chr3_4:56350918-56350937 Msa0508390:CDS 45.0%
AACAGCTATTAATGGCACGG+CGG + chr3_4:56351190-56351209 Msa0508390:CDS 45.0%
AGGTAGACGAATTTCACAGC+TGG - chr3_4:56351226-56351245 None:intergenic 45.0%
GTTGCAAAATCCAGCTCTTG+TGG + chr3_4:56351408-56351427 Msa0508390:three_prime_UTR 45.0%
!! TGTAATGGTGATGGGACTGA+TGG + chr3_4:56351609-56351628 Msa0508390:three_prime_UTR 45.0%
!! GTAATGGTGATGGGACTGAT+GGG + chr3_4:56351610-56351629 Msa0508390:three_prime_UTR 45.0%
AATTGCTTTGGCAGATTGGG+TGG + chr3_4:56351683-56351702 Msa0508390:three_prime_UTR 45.0%
ATTGCTTTGGCAGATTGGGT+GGG + chr3_4:56351684-56351703 Msa0508390:three_prime_UTR 45.0%
GAAGAAGGGAAGTAAGGAGT+TGG - chr3_4:56349694-56349713 None:intergenic 45.0%
GGATGTGAAGAAGGGAAGTA+AGG - chr3_4:56349700-56349719 None:intergenic 45.0%
TGGCTACAAAACAACCACTC+TGG + chr3_4:56349854-56349873 Msa0508390:CDS 45.0%
AGCTCGGTTAACGATTCAAC+GGG - chr3_4:56349952-56349971 None:intergenic 45.0%
CGTGAAACTCAGAAACAAGG+AGG + chr3_4:56350054-56350073 Msa0508390:CDS 45.0%
GCAGCATAAATAGCTTCCCA+AGG - chr3_4:56350252-56350271 None:intergenic 45.0%
GAAGCTATTTATGCTGCTGC+AGG + chr3_4:56350255-56350274 Msa0508390:CDS 45.0%
! CAGAATAGAAGGCGTGAACT+TGG + chr3_4:56350548-56350567 Msa0508390:CDS 45.0%
GTCCATATTGTGGTACCCTT+TGG - chr3_4:56350634-56350653 None:intergenic 45.0%
! AGGGTACCACAATATGGACT+TGG + chr3_4:56350635-56350654 Msa0508390:CDS 45.0%
GTACCACAATATGGACTTGG+TGG + chr3_4:56350638-56350657 Msa0508390:CDS 45.0%
GATCCACCAAGTCCATATTG+TGG - chr3_4:56350644-56350663 None:intergenic 45.0%
!! CAATATGGACTTGGTGGATC+CGG + chr3_4:56350644-56350663 Msa0508390:CDS 45.0%
!! AATATGGACTTGGTGGATCC+GGG + chr3_4:56350645-56350664 Msa0508390:CDS 45.0%
AGGCGGATCTTCTGTGAAAA+AGG + chr3_4:56350685-56350704 Msa0508390:CDS 45.0%
TCTGTGAAAAAGGTTTCCGG+TGG + chr3_4:56350695-56350714 Msa0508390:CDS 45.0%
AAAAAGGTTTCCGGTGGAAC+TGG + chr3_4:56350701-56350720 Msa0508390:CDS 45.0%
! GAATCTGAAGGTGTAGGAGT+AGG - chr3_4:56350758-56350777 None:intergenic 45.0%
! TTGCGTGAATCTGAAGGTGT+AGG - chr3_4:56350764-56350783 None:intergenic 45.0%
GTTCTCTTGCGTGAATCTGA+AGG - chr3_4:56350770-56350789 None:intergenic 45.0%
TCAGATTCACGCAAGAGAAC+TGG + chr3_4:56350770-56350789 Msa0508390:CDS 45.0%
ACCTGTTATGTTACCGGCAA+AGG + chr3_4:56350918-56350937 Msa0508390:CDS 45.0%
AACAGCTATTAATGGCACGG+CGG + chr3_4:56351190-56351209 Msa0508390:CDS 45.0%
AGGTAGACGAATTTCACAGC+TGG - chr3_4:56351226-56351245 None:intergenic 45.0%
GTTGCAAAATCCAGCTCTTG+TGG + chr3_4:56351408-56351427 Msa0508390:three_prime_UTR 45.0%
!! TGTAATGGTGATGGGACTGA+TGG + chr3_4:56351609-56351628 Msa0508390:three_prime_UTR 45.0%
!! GTAATGGTGATGGGACTGAT+GGG + chr3_4:56351610-56351629 Msa0508390:three_prime_UTR 45.0%
AATTGCTTTGGCAGATTGGG+TGG + chr3_4:56351683-56351702 Msa0508390:three_prime_UTR 45.0%
ATTGCTTTGGCAGATTGGGT+GGG + chr3_4:56351684-56351703 Msa0508390:three_prime_UTR 45.0%
ACTCGTAGGGGAACTCAGTA+GGG - chr3_4:56349915-56349934 None:intergenic 50.0%
AACTCGTAGGGGAACTCAGT+AGG - chr3_4:56349916-56349935 None:intergenic 50.0%
! ACGTCACGAGTTTTCACGGT+AGG - chr3_4:56350093-56350112 None:intergenic 50.0%
TACCGTGAAAACTCGTGACG+TGG + chr3_4:56350092-56350111 Msa0508390:CDS 50.0%
! TGCCACGTCACGAGTTTTCA+CGG - chr3_4:56350097-56350116 None:intergenic 50.0%
TGAAAACTCGTGACGTGGCA+GGG + chr3_4:56350097-56350116 Msa0508390:CDS 50.0%
!! TCAGGTGACGGAAGTCCTAA+CGG + chr3_4:56350183-56350202 Msa0508390:CDS 50.0%
GGAACACGAGAGTTTCCGTT+AGG - chr3_4:56350201-56350220 None:intergenic 50.0%
GCTTCCCAAGGGTCAACAAA+CGG - chr3_4:56350240-56350259 None:intergenic 50.0%
! ACTTGGTGGATCCGGGTTTA+GGG + chr3_4:56350652-56350671 Msa0508390:CDS 50.0%
TTGAACCGGAACCCTAAACC+CGG - chr3_4:56350666-56350685 None:intergenic 50.0%
! TTTAGGGTTCCGGTTCAAGG+CGG + chr3_4:56350668-56350687 Msa0508390:CDS 50.0%
ACAGAAGATCCGCCTTGAAC+CGG - chr3_4:56350680-56350699 None:intergenic 50.0%
GCCTTTGCCGGTAACATAAC+AGG - chr3_4:56350922-56350941 None:intergenic 50.0%
ACAGCTATTAATGGCACGGC+GGG + chr3_4:56351191-56351210 Msa0508390:CDS 50.0%
ACTCGTAGGGGAACTCAGTA+GGG - chr3_4:56349915-56349934 None:intergenic 50.0%
AACTCGTAGGGGAACTCAGT+AGG - chr3_4:56349916-56349935 None:intergenic 50.0%
! ACGTCACGAGTTTTCACGGT+AGG - chr3_4:56350093-56350112 None:intergenic 50.0%
TACCGTGAAAACTCGTGACG+TGG + chr3_4:56350092-56350111 Msa0508390:CDS 50.0%
! TGCCACGTCACGAGTTTTCA+CGG - chr3_4:56350097-56350116 None:intergenic 50.0%
TGAAAACTCGTGACGTGGCA+GGG + chr3_4:56350097-56350116 Msa0508390:CDS 50.0%
!! TCAGGTGACGGAAGTCCTAA+CGG + chr3_4:56350183-56350202 Msa0508390:CDS 50.0%
GGAACACGAGAGTTTCCGTT+AGG - chr3_4:56350201-56350220 None:intergenic 50.0%
GCTTCCCAAGGGTCAACAAA+CGG - chr3_4:56350240-56350259 None:intergenic 50.0%
! ACTTGGTGGATCCGGGTTTA+GGG + chr3_4:56350652-56350671 Msa0508390:CDS 50.0%
TTGAACCGGAACCCTAAACC+CGG - chr3_4:56350666-56350685 None:intergenic 50.0%
! TTTAGGGTTCCGGTTCAAGG+CGG + chr3_4:56350668-56350687 Msa0508390:CDS 50.0%
ACAGAAGATCCGCCTTGAAC+CGG - chr3_4:56350680-56350699 None:intergenic 50.0%
GCCTTTGCCGGTAACATAAC+AGG - chr3_4:56350922-56350941 None:intergenic 50.0%
ACAGCTATTAATGGCACGGC+GGG + chr3_4:56351191-56351210 Msa0508390:CDS 50.0%
AACTCAGGTGGAGACCAGAG+TGG - chr3_4:56349871-56349890 None:intergenic 55.0%
CTCAGTAGGGAAACCGAACG+CGG - chr3_4:56349902-56349921 None:intergenic 55.0%
GTGAAAACTCGTGACGTGGC+AGG + chr3_4:56350096-56350115 Msa0508390:CDS 55.0%
!! ATTCCACTCAGCGTCGACTG+AGG - chr3_4:56350126-56350145 None:intergenic 55.0%
CAGTCGACGCTGAGTGGAAT+CGG + chr3_4:56350126-56350145 Msa0508390:CDS 55.0%
AGTGGAATCGGTAGCTGGTC+TGG + chr3_4:56350138-56350157 Msa0508390:CDS 55.0%
! AGCTGGTCTGGTCGAAGCAA+CGG + chr3_4:56350150-56350169 Msa0508390:CDS 55.0%
TCTGGTCGAAGCAACGGTTC+TGG + chr3_4:56350156-56350175 Msa0508390:CDS 55.0%
! AGCAACGGTTCTGGTGGTTC+AGG + chr3_4:56350165-56350184 Msa0508390:CDS 55.0%
! GGTTCTGGTGGTTCAGGTGA+CGG + chr3_4:56350171-56350190 Msa0508390:CDS 55.0%
TCGTGTTCCGTCGCCTGTAA+CGG + chr3_4:56350212-56350231 Msa0508390:CDS 55.0%
TCAACAAACGGCGCCGTTAC+AGG - chr3_4:56350228-56350247 None:intergenic 55.0%
! CTGCTGCAGGTCAAGTTGCT+AGG + chr3_4:56350268-56350287 Msa0508390:CDS 55.0%
GGGTCCCACCCATGTTAACA+TGG + chr3_4:56350311-56350330 Msa0508390:CDS 55.0%
!! GACTTGGTGGATCCGGGTTT+AGG + chr3_4:56350651-56350670 Msa0508390:CDS 55.0%
! TGGATCCGGGTTTAGGGTTC+CGG + chr3_4:56350658-56350677 Msa0508390:CDS 55.0%
! GGGTTTAGGGTTCCGGTTCA+AGG + chr3_4:56350665-56350684 Msa0508390:CDS 55.0%
AACTCAGGTGGAGACCAGAG+TGG - chr3_4:56349871-56349890 None:intergenic 55.0%
CTCAGTAGGGAAACCGAACG+CGG - chr3_4:56349902-56349921 None:intergenic 55.0%
GTGAAAACTCGTGACGTGGC+AGG + chr3_4:56350096-56350115 Msa0508390:CDS 55.0%
!! ATTCCACTCAGCGTCGACTG+AGG - chr3_4:56350126-56350145 None:intergenic 55.0%
CAGTCGACGCTGAGTGGAAT+CGG + chr3_4:56350126-56350145 Msa0508390:CDS 55.0%
AGTGGAATCGGTAGCTGGTC+TGG + chr3_4:56350138-56350157 Msa0508390:CDS 55.0%
! AGCTGGTCTGGTCGAAGCAA+CGG + chr3_4:56350150-56350169 Msa0508390:CDS 55.0%
TCTGGTCGAAGCAACGGTTC+TGG + chr3_4:56350156-56350175 Msa0508390:CDS 55.0%
! AGCAACGGTTCTGGTGGTTC+AGG + chr3_4:56350165-56350184 Msa0508390:CDS 55.0%
! GGTTCTGGTGGTTCAGGTGA+CGG + chr3_4:56350171-56350190 Msa0508390:CDS 55.0%
TCGTGTTCCGTCGCCTGTAA+CGG + chr3_4:56350212-56350231 Msa0508390:CDS 55.0%
TCAACAAACGGCGCCGTTAC+AGG - chr3_4:56350228-56350247 None:intergenic 55.0%
! CTGCTGCAGGTCAAGTTGCT+AGG + chr3_4:56350268-56350287 Msa0508390:CDS 55.0%
GGGTCCCACCCATGTTAACA+TGG + chr3_4:56350311-56350330 Msa0508390:CDS 55.0%
!! GACTTGGTGGATCCGGGTTT+AGG + chr3_4:56350651-56350670 Msa0508390:CDS 55.0%
! TGGATCCGGGTTTAGGGTTC+CGG + chr3_4:56350658-56350677 Msa0508390:CDS 55.0%
! GGGTTTAGGGTTCCGGTTCA+AGG + chr3_4:56350665-56350684 Msa0508390:CDS 55.0%
AGTAGGGAAACCGAACGCGG+CGG - chr3_4:56349899-56349918 None:intergenic 60.0%
CGCTGAGTGGAATCGGTAGC+TGG + chr3_4:56350133-56350152 Msa0508390:CDS 60.0%
! GGTCGAAGCAACGGTTCTGG+TGG + chr3_4:56350159-56350178 Msa0508390:CDS 60.0%
! GGCGCCGTTTGTTGACCCTT+GGG + chr3_4:56350233-56350252 Msa0508390:CDS 60.0%
AGTAGGGAAACCGAACGCGG+CGG - chr3_4:56349899-56349918 None:intergenic 60.0%
CGCTGAGTGGAATCGGTAGC+TGG + chr3_4:56350133-56350152 Msa0508390:CDS 60.0%
! GGTCGAAGCAACGGTTCTGG+TGG + chr3_4:56350159-56350178 Msa0508390:CDS 60.0%
! GGCGCCGTTTGTTGACCCTT+GGG + chr3_4:56350233-56350252 Msa0508390:CDS 60.0%
TCGCCTCAGTCGACGCTGAG+TGG + chr3_4:56350120-56350139 Msa0508390:CDS 65.0%
AACGGCGCCGTTACAGGCGA+CGG - chr3_4:56350222-56350241 None:intergenic 65.0%
! CGGCGCCGTTTGTTGACCCT+TGG + chr3_4:56350232-56350251 Msa0508390:CDS 65.0%
TCGCCTCAGTCGACGCTGAG+TGG + chr3_4:56350120-56350139 Msa0508390:CDS 65.0%
AACGGCGCCGTTACAGGCGA+CGG - chr3_4:56350222-56350241 None:intergenic 65.0%
! CGGCGCCGTTTGTTGACCCT+TGG + chr3_4:56350232-56350251 Msa0508390:CDS 65.0%
! AACGCGGCGGCGTCGAACTC+AGG - chr3_4:56349886-56349905 None:intergenic 70.0%
GAGTTCGACGCCGCCGCGTT+CGG + chr3_4:56349886-56349905 Msa0508390:CDS 70.0%
! AACGCGGCGGCGTCGAACTC+AGG - chr3_4:56349886-56349905 None:intergenic 70.0%
GAGTTCGACGCCGCCGCGTT+CGG + chr3_4:56349886-56349905 Msa0508390:CDS 70.0%
! GCGGCGGCGTCGAACTCAGG+TGG - chr3_4:56349883-56349902 None:intergenic 75.0%
! GCGGCGGCGTCGAACTCAGG+TGG - chr3_4:56349883-56349902 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 56349645 56351714 56349645 ID=Msa0508390;Name=Msa0508390
chr3_4 mRNA 56349645 56351714 56349645 ID=Msa0508390-mRNA-1;Parent=Msa0508390;Name=Msa0508390-mRNA-1;_AED=0.09;_eAED=0.09;_QI=202|1|1|1|0.75|0.6|5|413|353
chr3_4 exon 56349645 56350332 56349645 ID=Msa0508390-mRNA-1:exon:12693;Parent=Msa0508390-mRNA-1
chr3_4 exon 56350437 56350791 56350437 ID=Msa0508390-mRNA-1:exon:12694;Parent=Msa0508390-mRNA-1
chr3_4 exon 56350911 56351021 56350911 ID=Msa0508390-mRNA-1:exon:12695;Parent=Msa0508390-mRNA-1
chr3_4 exon 56351154 56351339 56351154 ID=Msa0508390-mRNA-1:exon:12696;Parent=Msa0508390-mRNA-1
chr3_4 exon 56351378 56351714 56351378 ID=Msa0508390-mRNA-1:exon:12697;Parent=Msa0508390-mRNA-1
chr3_4 five_prime_UTR 56349645 56349846 56349645 ID=Msa0508390-mRNA-1:five_prime_utr;Parent=Msa0508390-mRNA-1
chr3_4 CDS 56349847 56350332 56349847 ID=Msa0508390-mRNA-1:cds;Parent=Msa0508390-mRNA-1
chr3_4 CDS 56350437 56350791 56350437 ID=Msa0508390-mRNA-1:cds;Parent=Msa0508390-mRNA-1
chr3_4 CDS 56350911 56351021 56350911 ID=Msa0508390-mRNA-1:cds;Parent=Msa0508390-mRNA-1
chr3_4 CDS 56351154 56351263 56351154 ID=Msa0508390-mRNA-1:cds;Parent=Msa0508390-mRNA-1
chr3_4 three_prime_UTR 56351264 56351339 56351264 ID=Msa0508390-mRNA-1:three_prime_utr;Parent=Msa0508390-mRNA-1
chr3_4 three_prime_UTR 56351378 56351714 56351378 ID=Msa0508390-mRNA-1:three_prime_utr;Parent=Msa0508390-mRNA-1
Gene Sequence

>Msa0508390

ATGTCAATGGCTACAAAACAACCACTCTGGTCTCCACCTGAGTTCGACGCCGCCGCGTTCGGTTTCCCTACTGAGTTCCCCTACGAGTTTGAACTATCTTCACCCGTTGAATCGTTAACCGAGCTAACAGACTCAACAGAAAACAGTAGCGACGAAGAAGAAAGTTTCTTTGCTGGGTTAACTCAAAGACTGAGTCAAACCACTCTTCGTGAAACTCAGAAACAAGGAGGATTCATCACAGCACCTACCGTGAAAACTCGTGACGTGGCAGGGTCGCCTCAGTCGACGCTGAGTGGAATCGGTAGCTGGTCTGGTCGAAGCAACGGTTCTGGTGGTTCAGGTGACGGAAGTCCTAACGGAAACTCTCGTGTTCCGTCGCCTGTAACGGCGCCGTTTGTTGACCCTTGGGAAGCTATTTATGCTGCTGCAGGTCAAGTTGCTAGGTTTAAAATGAACAACTCAGTGGGTCCCACCCATGTTAACATGGTCAATGGAGAAATGAAACAGAAACAGAAACAAGAGCTATTAGATTGTTGTTCCGTGTGGGAAAGAGAACAGAATCCTAATTGGTTGGTTCAGCAACAGTTACTGTTGATTCAGAATAGAAGGCGTGAACTTGGTTATGAAAGTTCTACTGCAAGATGTAGCGTTCCTTTGTCTTTTCAACAAACTCAGCAAAACCAAAGGGTACCACAATATGGACTTGGTGGATCCGGGTTTAGGGTTCCGGTTCAAGGCGGATCTTCTGTGAAAAAGGTTTCCGGTGGAACTGGTGTGTTTTTACCTCGTCATTATGATACTACACCTACTCCTACACCTTCAGATTCACGCAAGAGAACTGGTTGTGTACCTGTTATGTTACCGGCAAAGGCAGTAAATTTTAACATGAACATTGATGACCGAAATGTTACTACTCAACCACGCTTGACTAATGTTTTTGCTAATGATTATGATTTGTTGTTGGCAAGGAGAAACGCGCTTTTGAAGCAACAGCTATTAATGGCACGGCGGGAAGAAGCTGCCAGCTGTGAAATTCGTCTACCTCAAGAGTGGACTTATTGA
Protein sequence

>Msa0508390

MSMATKQPLWSPPEFDAAAFGFPTEFPYEFELSSPVESLTELTDSTENSSDEEESFFAGLTQRLSQTTLRETQKQGGFITAPTVKTRDVAGSPQSTLSGIGSWSGRSNGSGGSGDGSPNGNSRVPSPVTAPFVDPWEAIYAAAGQVARFKMNNSVGPTHVNMVNGEMKQKQKQELLDCCSVWEREQNPNWLVQQQLLLIQNRRRELGYESSTARCSVPLSFQQTQQNQRVPQYGLGGSGFRVPVQGGSSVKKVSGGTGVFLPRHYDTTPTPTPSDSRKRTGCVPVMLPAKAVNFNMNIDDRNVTTQPRLTNVFANDYDLLLARRNALLKQQLLMARREEAASCEIRLPQEWTY*