Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508710 | XP_003600862.1 | 98.264 | 288 | 5 | 0 | 1 | 288 | 1 | 288 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508710 | sp|O04202|EIF3F_ARATH | 75.945 | 291 | 66 | 1 | 2 | 288 | 3 | 293 | 6.24e-159 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508710 | B7FK44 | 98.264 | 288 | 5 | 0 | 1 | 288 | 1 | 288 | 0.0 | 581 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0463080 | Msa0508710 | 0.820503 | 6.625860e-53 | -8.615850e-47 |
| Msa0508710 | Msa0850520 | -0.800734 | 1.254370e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508710 | MtrunA17_Chr3g0113201 | 98.264 | 288 | 5 | 0 | 1 | 288 | 1 | 288 | 0.0 | 581 |
| Msa0508710 | MtrunA17_Chr5g0436671 | 88.542 | 288 | 29 | 1 | 1 | 288 | 1 | 284 | 0.0 | 517 |
| Msa0508710 | MtrunA17_Chr3g0113191 | 33.096 | 281 | 170 | 7 | 17 | 283 | 10 | 286 | 1.15e-34 | 127 |
| Msa0508710 | MtrunA17_Chr5g0436641 | 32.841 | 271 | 165 | 6 | 25 | 282 | 19 | 285 | 1.96e-34 | 127 |
| Msa0508710 | MtrunA17_Chr5g0436681 | 75.000 | 40 | 10 | 0 | 182 | 221 | 16 | 55 | 6.49e-13 | 62.8 |
| Msa0508710 | MtrunA17_Chr3g0079641 | 23.856 | 306 | 195 | 6 | 14 | 284 | 2 | 304 | 5.71e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508710 | AT2G39990.1 | 75.945 | 291 | 66 | 1 | 2 | 288 | 3 | 293 | 6.34e-160 | 447 |
| Msa0508710 | AT3G11270.2 | 32.979 | 282 | 169 | 7 | 17 | 282 | 5 | 282 | 1.50e-36 | 132 |
| Msa0508710 | AT3G11270.1 | 32.632 | 285 | 169 | 7 | 17 | 282 | 5 | 285 | 4.56e-36 | 131 |
| Msa0508710 | AT5G05780.2 | 31.560 | 282 | 173 | 7 | 17 | 282 | 5 | 282 | 1.08e-33 | 125 |
| Msa0508710 | AT5G05780.1 | 31.228 | 285 | 173 | 7 | 17 | 282 | 5 | 285 | 3.18e-33 | 124 |
| Msa0508710 | AT4G26430.1 | 24.342 | 304 | 191 | 7 | 16 | 284 | 4 | 303 | 2.69e-13 | 69.3 |
| Msa0508710 | AT5G56280.1 | 24.752 | 303 | 191 | 7 | 16 | 284 | 4 | 303 | 1.07e-12 | 67.8 |
Find 72 sgRNAs with CRISPR-Local
Find 375 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGTCATTGGAACGCTTCT+TGG | 0.210700 | 3_4:-56819328 | Msa0508710:CDS |
| ATGCTGATACTACAAGTTTC+TGG | 0.229094 | 3_4:+56813460 | None:intergenic |
| GTTGCACCAGACAACAAAAT+TGG | 0.229921 | 3_4:-56813887 | Msa0508710:CDS |
| ACAGTCAGAATTACAAAATC+TGG | 0.275877 | 3_4:+56813531 | None:intergenic |
| GGTGGGACAACAACATATTA+TGG | 0.277706 | 3_4:+56815462 | None:intergenic |
| TGTCAACAGTGGTTGCCTTT+AGG | 0.305583 | 3_4:+56814082 | None:intergenic |
| GTTTGACACATAAGCTTTGA+TGG | 0.319915 | 3_4:+56814819 | None:intergenic |
| CTTGGATCTGTTCTTCCTGA+TGG | 0.343100 | 3_4:-56819310 | Msa0508710:CDS |
| GCTTGTGAACGACAGCTTAC+AGG | 0.343421 | 3_4:-56813804 | Msa0508710:intron |
| TCAACTGGACTTGGAGTAAC+TGG | 0.372693 | 3_4:-56814934 | Msa0508710:CDS |
| GTGTCAAACAATTTATCTCT+TGG | 0.383210 | 3_4:-56814805 | Msa0508710:CDS |
| TATTTATGCAGGTATTCAAC+TGG | 0.393038 | 3_4:-56814949 | Msa0508710:intron |
| ATTCATTTGACTGTTGATAC+AGG | 0.396286 | 3_4:-56814862 | Msa0508710:CDS |
| GATCAAGCTGAACGCGTCAT+TGG | 0.409335 | 3_4:-56819340 | Msa0508710:CDS |
| AACAGTCAAATGAATGGGAT+TGG | 0.410536 | 3_4:+56814870 | None:intergenic |
| TGCAGGTATTCAACTGGACT+TGG | 0.422441 | 3_4:-56814943 | Msa0508710:intron |
| AAAATCCCCTCTGACTTAGA+AGG | 0.446924 | 3_4:-56814060 | Msa0508710:CDS |
| AGAAGGCATGGAAGCATCAA+TGG | 0.461890 | 3_4:-56814043 | Msa0508710:CDS |
| AATCAAAAGGAAGTCATAGT+TGG | 0.465079 | 3_4:-56815431 | Msa0508710:CDS |
| TCACAATGAATCCGTTGATC+AGG | 0.465189 | 3_4:-56819254 | Msa0508710:intron |
| TGTATCAACAGTCAAATGAA+TGG | 0.465420 | 3_4:+56814864 | None:intergenic |
| TCCAACCTCCTCTGCGAACA+TGG | 0.475173 | 3_4:-56819482 | Msa0508710:exon |
| TTGCACCAGACAACAAAATT+GGG | 0.482472 | 3_4:-56813886 | Msa0508710:CDS |
| ATGGTTGAAGCTGAGCGAAT+TGG | 0.484794 | 3_4:-56814733 | Msa0508710:CDS |
| GAATTGCAACACTGTGCAAT+TGG | 0.486515 | 3_4:+56819453 | None:intergenic |
| GAGGAACAGCATATGAATTA+CGG | 0.486958 | 3_4:+56819275 | None:intergenic |
| ACAATTTATCTCTTGGAGAC+AGG | 0.488454 | 3_4:-56814798 | Msa0508710:CDS |
| ACAGTCAAATGAATGGGATT+GGG | 0.491042 | 3_4:+56814871 | None:intergenic |
| TTCTCAGAGCTTATCCGCTA+AGG | 0.495822 | 3_4:-56819413 | Msa0508710:CDS |
| GTATCAACAGTCAAATGAAT+GGG | 0.496605 | 3_4:+56814865 | None:intergenic |
| CGGATATCAACAGTTCCATC+AGG | 0.497957 | 3_4:+56819295 | None:intergenic |
| CCCCTCTGACTTAGAAGGCA+TGG | 0.501688 | 3_4:-56814055 | Msa0508710:CDS |
| GTTGATACAGGATTCACAAC+TGG | 0.502330 | 3_4:-56814850 | Msa0508710:CDS |
| ATGACGCGTTCAGCTTGATC+AGG | 0.505348 | 3_4:+56819343 | None:intergenic |
| CACAAGAACTCAACTTAGCT+TGG | 0.506158 | 3_4:-56813576 | Msa0508710:CDS |
| ACAAGCTTATCAAAATCAGA+TGG | 0.513873 | 3_4:+56813821 | None:intergenic |
| AATATGACAAGGAAAACCTC+CGG | 0.526520 | 3_4:+56813485 | None:intergenic |
| CAAGCTTATCAAAATCAGAT+GGG | 0.536179 | 3_4:+56813822 | None:intergenic |
| AATTCCACTGGATCTTCGTA+TGG | 0.540296 | 3_4:-56814752 | Msa0508710:CDS |
| CTTCTCGAGAATAAAACTCA+TGG | 0.540683 | 3_4:+56814896 | None:intergenic |
| CAGTCAGAATTACAAAATCT+GGG | 0.544157 | 3_4:+56813532 | None:intergenic |
| GTTTCAGGATCACTTGCTCA+TGG | 0.545819 | 3_4:-56813615 | Msa0508710:intron |
| TGACGCCATGTTCGCAGAGG+AGG | 0.548240 | 3_4:+56819477 | None:intergenic |
| ATATGACAAGGAAAACCTCC+GGG | 0.556542 | 3_4:+56813486 | None:intergenic |
| AATGTCAGTTGATATCCTAA+AGG | 0.558985 | 3_4:-56814097 | Msa0508710:intron |
| GCCATGTTCGCAGAGGAGGT+TGG | 0.571219 | 3_4:+56819481 | None:intergenic |
| TCCATGCCTTCTAAGTCAGA+GGG | 0.582710 | 3_4:+56814054 | None:intergenic |
| TTCTGACTGTCTCTGAGCGA+AGG | 0.593642 | 3_4:-56813518 | Msa0508710:three_prime_UTR |
| CAAATATGTTGATGATGTTG+TGG | 0.594015 | 3_4:-56813989 | Msa0508710:intron |
| TGCGCATGGCAACGCATAGG+TGG | 0.594293 | 3_4:-56813397 | Msa0508710:three_prime_UTR |
| AAAAGGAAGTCATAGTTGGA+TGG | 0.597430 | 3_4:-56815427 | Msa0508710:intron |
| AGCGGATAAGCTCTGAGAAG+AGG | 0.597938 | 3_4:+56819417 | None:intergenic |
| TTCCATGCCTTCTAAGTCAG+AGG | 0.599344 | 3_4:+56814053 | None:intergenic |
| CGAGGGAAGGACCTGATCAA+CGG | 0.606460 | 3_4:+56819243 | None:intergenic |
| GACGAGAGGATGAACCTTAG+CGG | 0.606488 | 3_4:+56819399 | None:intergenic |
| ACAGGATTCACAACTGGAGG+GGG | 0.607665 | 3_4:-56814844 | Msa0508710:CDS |
| AAATTTATATCAGATGCAGT+AGG | 0.618068 | 3_4:-56813863 | Msa0508710:CDS |
| GATACAGGATTCACAACTGG+AGG | 0.619089 | 3_4:-56814847 | Msa0508710:CDS |
| ACTGGACTTGGAGTAACTGG+TGG | 0.625290 | 3_4:-56814931 | Msa0508710:CDS |
| TGATCAACGGATTCATTGTG+AGG | 0.630205 | 3_4:+56819256 | None:intergenic |
| TACAGGATTCACAACTGGAG+GGG | 0.630808 | 3_4:-56814845 | Msa0508710:CDS |
| ACAGTTTCAAGAAATTCCAC+TGG | 0.631890 | 3_4:-56814764 | Msa0508710:CDS |
| AAGCTTATCAAAATCAGATG+GGG | 0.633795 | 3_4:+56813823 | None:intergenic |
| ATACAGGATTCACAACTGGA+GGG | 0.659687 | 3_4:-56814846 | Msa0508710:CDS |
| AGCTTATCAAAATCAGATGG+GGG | 0.668310 | 3_4:+56813824 | None:intergenic |
| CAGATGTTGAATACGACGAG+AGG | 0.671951 | 3_4:+56819385 | None:intergenic |
| GGTTGACGCCATGTTCGCAG+AGG | 0.683491 | 3_4:+56819474 | None:intergenic |
| GGGACAACAACATATTATGG+TGG | 0.692260 | 3_4:+56815465 | None:intergenic |
| CCATGCCTTCTAAGTCAGAG+GGG | 0.694607 | 3_4:+56814055 | None:intergenic |
| TCAACCATACGAAGATCCAG+TGG | 0.695781 | 3_4:+56814748 | None:intergenic |
| AGTTTCTGGAAAATATGACA+AGG | 0.735731 | 3_4:+56813474 | None:intergenic |
| TATGACAAGGAAAACCTCCG+GGG | 0.764528 | 3_4:+56813487 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATTAAAAATCAATATT+TGG | + | chr3_4:56818680-56818699 | None:intergenic | 10.0% |
| !! | GTTGTATTTATAAATATGAT+AGG | - | chr3_4:56813745-56813764 | Msa0508710:intron | 15.0% |
| !! | TATTTATAAATATGATAGGA+GGG | - | chr3_4:56813749-56813768 | Msa0508710:intron | 15.0% |
| !!! | TGCCAATTTTTTATTTTTTT+TGG | - | chr3_4:56815165-56815184 | Msa0508710:intron | 15.0% |
| !! | GACCAAAAAAAATAAAAAAT+TGG | + | chr3_4:56815170-56815189 | None:intergenic | 15.0% |
| !!! | ATTTTTTATTTTTTTTGGTC+AGG | - | chr3_4:56815170-56815189 | Msa0508710:intron | 15.0% |
| !! | TAAAAGAAATATATCACTAT+GGG | + | chr3_4:56815408-56815427 | None:intergenic | 15.0% |
| !! | TTAAAAGAAATATATCACTA+TGG | + | chr3_4:56815409-56815428 | None:intergenic | 15.0% |
| !!! | ATAGTGATATATTTCTTTTA+AGG | - | chr3_4:56815408-56815427 | Msa0508710:intron | 15.0% |
| !!! | GTAAGAAAGTATAAAAAAAA+AGG | + | chr3_4:56815456-56815475 | None:intergenic | 15.0% |
| !! | AAAGTATATTATTAACTAAG+GGG | + | chr3_4:56815479-56815498 | None:intergenic | 15.0% |
| !!! | GAAAGTATATTATTAACTAA+GGG | + | chr3_4:56815480-56815499 | None:intergenic | 15.0% |
| !!! | AGAAAGTATATTATTAACTA+AGG | + | chr3_4:56815481-56815500 | None:intergenic | 15.0% |
| !! | AAAGAAGAAAAAATTATTAC+AGG | + | chr3_4:56815723-56815742 | None:intergenic | 15.0% |
| !! | TTTCAAATTAAGCTTAATTT+AGG | - | chr3_4:56815772-56815791 | Msa0508710:intron | 15.0% |
| !!! | TGTATTGATAAAAAACTTAT+AGG | - | chr3_4:56815866-56815885 | Msa0508710:intron | 15.0% |
| !! | TGGTTAATATTAATATGAAA+TGG | - | chr3_4:56817674-56817693 | Msa0508710:intron | 15.0% |
| !! | CTTGTGAAAATATTAAATTA+AGG | - | chr3_4:56818649-56818668 | Msa0508710:intron | 15.0% |
| !! | AAAATACAACAAAAAAACAA+AGG | + | chr3_4:56819407-56819426 | None:intergenic | 15.0% |
| !! | AATATGTAATAGTAGAAAAA+AGG | + | chr3_4:56819532-56819551 | None:intergenic | 15.0% |
| !! | ATCACATATTAAAATGTAGA+TGG | + | chr3_4:56813609-56813628 | None:intergenic | 20.0% |
| !!! | ATAATTGTGAACTTTTTGTT+TGG | - | chr3_4:56813703-56813722 | Msa0508710:intron | 20.0% |
| !! | GTATTTATAAATATGATAGG+AGG | - | chr3_4:56813748-56813767 | Msa0508710:intron | 20.0% |
| !!! | TAGTTGAAATTTTAACAGAA+TGG | + | chr3_4:56813885-56813904 | None:intergenic | 20.0% |
| !! | AAATAGATTTACTCATGTAA+TGG | - | chr3_4:56814340-56814359 | Msa0508710:intron | 20.0% |
| !! | AAATAGATTTACTCATGTAA+TGG | - | chr3_4:56814340-56814359 | Msa0508710:intron | 20.0% |
| !!! | ATTGAATTTTTGTCTAGATA+AGG | - | chr3_4:56815012-56815031 | Msa0508710:intron | 20.0% |
| !! | AGTTATAAAGAAAAAACTGA+CGG | - | chr3_4:56815249-56815268 | Msa0508710:intron | 20.0% |
| !!! | TTCACTCTTTTATATAGTAT+TGG | - | chr3_4:56815376-56815395 | Msa0508710:intron | 20.0% |
| !!! | TCACTCTTTTATATAGTATT+GGG | - | chr3_4:56815377-56815396 | Msa0508710:intron | 20.0% |
| !! | GGTATATTTAGTATTAATCT+GGG | + | chr3_4:56815435-56815454 | None:intergenic | 20.0% |
| !! | AGGTATATTTAGTATTAATC+TGG | + | chr3_4:56815436-56815455 | None:intergenic | 20.0% |
| !! | AAGTATATTATTAACTAAGG+GGG | + | chr3_4:56815478-56815497 | None:intergenic | 20.0% |
| !! | ATACAACAATATCATTACTT+TGG | + | chr3_4:56815851-56815870 | None:intergenic | 20.0% |
| !! | TATAAGAGAAACTATTAAGA+AGG | - | chr3_4:56816186-56816205 | Msa0508710:intron | 20.0% |
| !! | AAAGTATATACTTATCTCAT+CGG | - | chr3_4:56816733-56816752 | Msa0508710:intron | 20.0% |
| !!! | ATTGAATTTTTGTCTAGATA+AGG | - | chr3_4:56815012-56815031 | Msa0508710:intron | 20.0% |
| !!! | TTGAATTTTTGTCTAGATAA+GGG | - | chr3_4:56815013-56815032 | Msa0508710:intron | 20.0% |
| !! | GTTTATTGATATCTAATTAG+AGG | - | chr3_4:56816998-56817017 | Msa0508710:intron | 20.0% |
| !!! | CATTTGTTTTATATACCAAT+GGG | + | chr3_4:56817634-56817653 | None:intergenic | 20.0% |
| !! | TGGTTAATATTAATACGAAA+TGG | - | chr3_4:56817716-56817735 | Msa0508710:intron | 20.0% |
| !!! | GGTTGATATTAATATACAAA+TGG | - | chr3_4:56817759-56817778 | Msa0508710:intron | 20.0% |
| !! | ATATTAATATACAAATGGAC+TGG | - | chr3_4:56817764-56817783 | Msa0508710:intron | 20.0% |
| !! | AATAATCAAAGTTTACACAA+GGG | + | chr3_4:56817858-56817877 | None:intergenic | 20.0% |
| !! | AAATAATCAAAGTTTACACA+AGG | + | chr3_4:56817859-56817878 | None:intergenic | 20.0% |
| !! | TAAACTTTGATTATTTATGC+AGG | - | chr3_4:56817863-56817882 | Msa0508710:intron | 20.0% |
| !!! | AAAAGCTAAGACTTTAAAAT+AGG | + | chr3_4:56818262-56818281 | None:intergenic | 20.0% |
| !!! | CTTAGCTTTTAATTATGTAA+TGG | - | chr3_4:56818272-56818291 | Msa0508710:intron | 20.0% |
| !!! | TTTCTTTTATATCTCGTATA+AGG | - | chr3_4:56819450-56819469 | Msa0508710:CDS | 20.0% |
| ! | ACATATTAAAATGTAGATGG+AGG | + | chr3_4:56813606-56813625 | None:intergenic | 25.0% |
| ! | ATACAACAATATCCTTACTT+TGG | + | chr3_4:56813732-56813751 | None:intergenic | 25.0% |
| !! | TTTTCTCTTATAGCTTATCT+AGG | + | chr3_4:56814058-56814077 | None:intergenic | 25.0% |
| ! | AAGAGAAAATATGAATGAGT+TGG | - | chr3_4:56814069-56814088 | Msa0508710:CDS | 25.0% |
| ! | ATCTGAACAAACACTTATAA+AGG | - | chr3_4:56814316-56814335 | Msa0508710:intron | 25.0% |
| ! | AAGAGAAAATATGAATGAGT+TGG | - | chr3_4:56814069-56814088 | Msa0508710:CDS | 25.0% |
| !! | TTCAAACTCAGAAGAAATTT+TGG | + | chr3_4:56814874-56814893 | None:intergenic | 25.0% |
| ! | AGCAAAAACTTGAGAAATTT+AGG | + | chr3_4:56814986-56815005 | None:intergenic | 25.0% |
| ! | AAAAAACTTATAGGAGTGAA+TGG | - | chr3_4:56815875-56815894 | Msa0508710:intron | 25.0% |
| ! | CTTAAAAGAATCAGATAAGA+GGG | - | chr3_4:56815968-56815987 | Msa0508710:intron | 25.0% |
| !! | AGAGTTGTAATTTTCACAAA+TGG | + | chr3_4:56816006-56816025 | None:intergenic | 25.0% |
| !! | CAACCATCTTTTCTTAATAT+AGG | + | chr3_4:56816071-56816090 | None:intergenic | 25.0% |
| ! | GGATCTAGATATTAATGAAT+TGG | - | chr3_4:56816207-56816226 | Msa0508710:intron | 25.0% |
| !! | TGGTTTTTGACATATTACTA+TGG | - | chr3_4:56816239-56816258 | Msa0508710:intron | 25.0% |
| !!! | TTTTAGCTTCAAAAGTAAGA+AGG | + | chr3_4:56816391-56816410 | None:intergenic | 25.0% |
| !!! | TTTTGAAGCTAAAACTTATG+TGG | - | chr3_4:56816397-56816416 | Msa0508710:intron | 25.0% |
| !!! | TTTTAGCTTTGAAAACAAGA+AGG | + | chr3_4:56816429-56816448 | None:intergenic | 25.0% |
| !! | TTGTTTTCAAAGCTAAAACA+TGG | - | chr3_4:56816431-56816450 | Msa0508710:intron | 25.0% |
| !! | AAATAGATTTGCTCATGTAA+TGG | - | chr3_4:56816517-56816536 | Msa0508710:intron | 25.0% |
| !! | TTCAAACTCAGAACAAATTT+TGG | + | chr3_4:56816652-56816671 | None:intergenic | 25.0% |
| !! | CTTTCAAACTCAAGAAATTT+TGG | + | chr3_4:56816717-56816736 | None:intergenic | 25.0% |
| ! | ATAAGATGAACAAAAACTTG+AGG | + | chr3_4:56816835-56816854 | None:intergenic | 25.0% |
| ! | ATTAGATATCAATAAACGAC+AGG | + | chr3_4:56816995-56817014 | None:intergenic | 25.0% |
| !!! | CTAATTAGAGGTACTTTTTT+AGG | - | chr3_4:56817010-56817029 | Msa0508710:intron | 25.0% |
| !!! | AGTTTTGACTTTGATTGATA+AGG | - | chr3_4:56817133-56817152 | Msa0508710:intron | 25.0% |
| ! | GTGTAAAAGTTATAAGCTTA+AGG | - | chr3_4:56817179-56817198 | Msa0508710:intron | 25.0% |
| !!! | TTTAGCTGTAACTTGTTTTA+TGG | - | chr3_4:56817603-56817622 | Msa0508710:intron | 25.0% |
| !!! | TTAGCTGTAACTTGTTTTAT+GGG | - | chr3_4:56817604-56817623 | Msa0508710:intron | 25.0% |
| !!! | CCATTTGTTTTATATACCAA+TGG | + | chr3_4:56817635-56817654 | None:intergenic | 25.0% |
| ! | CCATTGGTATATAAAACAAA+TGG | - | chr3_4:56817632-56817651 | Msa0508710:intron | 25.0% |
| ! | TAATACGAAATGGTTTCTTT+AGG | - | chr3_4:56817726-56817745 | Msa0508710:intron | 25.0% |
| ! | AATACGAAATGGTTTCTTTA+GGG | - | chr3_4:56817727-56817746 | Msa0508710:intron | 25.0% |
| !!! | AATTGGATGTAAGTATTGAT+TGG | - | chr3_4:56818107-56818126 | Msa0508710:intron | 25.0% |
| ! | AGAAGGAAAAAAAAAGAAAG+CGG | + | chr3_4:56818150-56818169 | None:intergenic | 25.0% |
| !! | GACAAATAAAGCTTTATAGA+GGG | + | chr3_4:56818182-56818201 | None:intergenic | 25.0% |
| !! | TGACAAATAAAGCTTTATAG+AGG | + | chr3_4:56818183-56818202 | None:intergenic | 25.0% |
| ! | AACATTTACAGTACTTTGTT+GGG | - | chr3_4:56818318-56818337 | Msa0508710:intron | 25.0% |
| ! | AAACAAGTCTATATACAGTA+TGG | + | chr3_4:56818490-56818509 | None:intergenic | 25.0% |
| ! | AAATTTATATCAGATGCAGT+AGG | - | chr3_4:56818960-56818979 | Msa0508710:intron | 25.0% |
| TTGTTTCAGTTTCATGAAAC+TGG | - | chr3_4:56813799-56813818 | Msa0508710:intron | 30.0% | |
| ACAAGATTAGAGAGTAAGTT+GGG | - | chr3_4:56813920-56813939 | Msa0508710:intron | 30.0% | |
| ! | CTACCATCTTTTCTACTAAT+AGG | + | chr3_4:56813951-56813970 | None:intergenic | 30.0% |
| ! | AAACTAGACTTAGGTTGTTT+GGG | - | chr3_4:56813971-56813990 | Msa0508710:intron | 30.0% |
| ATCTGAACAAACACTTGTAA+AGG | - | chr3_4:56814713-56814732 | Msa0508710:intron | 30.0% | |
| TATTTATATTCTGACACCCA+AGG | - | chr3_4:56815052-56815071 | Msa0508710:intron | 30.0% | |
| !!! | TATTTTTTTTGGTCAGGATC+TGG | - | chr3_4:56815176-56815195 | Msa0508710:intron | 30.0% |
| !! | CTTTTATATAGTATTGGGCT+AGG | - | chr3_4:56815382-56815401 | Msa0508710:intron | 30.0% |
| TCTGATTCATATCATACAAG+AGG | + | chr3_4:56815663-56815682 | None:intergenic | 30.0% | |
| ATCATTGTGAACTCTATGTT+TGG | - | chr3_4:56815822-56815841 | Msa0508710:intron | 30.0% | |
| GCTTAAAAGAATCAGATAAG+AGG | - | chr3_4:56815967-56815986 | Msa0508710:intron | 30.0% | |
| GCACCTATATTAAGAAAAGA+TGG | - | chr3_4:56816065-56816084 | Msa0508710:intron | 30.0% | |
| !! | AAACTAGACTTAGGTTGTTT+TGG | - | chr3_4:56813971-56813990 | Msa0508710:intron | 30.0% |
| GTTTCTCTTATAGCTTATCT+AGG | + | chr3_4:56816178-56816197 | None:intergenic | 30.0% | |
| TAATGAATTGGTGAAAGACA+TGG | - | chr3_4:56816219-56816238 | Msa0508710:intron | 30.0% | |
| !!! | AGGAAGTTTTTTTCTCTTTG+CGG | - | chr3_4:56817030-56817049 | Msa0508710:intron | 30.0% |
| ! | TTTGACTTTGATTGATAAGG+TGG | - | chr3_4:56817136-56817155 | Msa0508710:intron | 30.0% |
| !!! | CTTTTGATTCACTTTTTGGT+GGG | + | chr3_4:56817381-56817400 | None:intergenic | 30.0% |
| !! | CTTCCTTTTGATTCACTTTT+TGG | + | chr3_4:56817385-56817404 | None:intergenic | 30.0% |
| AATCAAAAGGAAGTCATAGT+TGG | - | chr3_4:56817392-56817411 | Msa0508710:intron | 30.0% | |
| AGTGATAACATTGACAACTA+CGG | + | chr3_4:56817444-56817463 | None:intergenic | 30.0% | |
| AAAATGTTCACTCTGATATC+TGG | - | chr3_4:56817534-56817553 | Msa0508710:intron | 30.0% | |
| TATTTATGCAGGTATTCAAC+TGG | - | chr3_4:56817874-56817893 | Msa0508710:intron | 30.0% | |
| GTATCAACAGTCAAATGAAT+GGG | + | chr3_4:56817961-56817980 | None:intergenic | 30.0% | |
| TGTATCAACAGTCAAATGAA+TGG | + | chr3_4:56817962-56817981 | None:intergenic | 30.0% | |
| ATTCATTTGACTGTTGATAC+AGG | - | chr3_4:56817961-56817980 | Msa0508710:intron | 30.0% | |
| GTGTCAAACAATTTATCTCT+TGG | - | chr3_4:56818018-56818037 | Msa0508710:intron | 30.0% | |
| GAAGGAAAAAAAAAGAAAGC+GGG | + | chr3_4:56818149-56818168 | None:intergenic | 30.0% | |
| CAAGCTTAGGCAAATATATA+AGG | + | chr3_4:56818219-56818238 | None:intergenic | 30.0% | |
| !! | AAAGTACTGTAAATGTTCAC+GGG | + | chr3_4:56818315-56818334 | None:intergenic | 30.0% |
| !! | CAAAGTACTGTAAATGTTCA+CGG | + | chr3_4:56818316-56818335 | None:intergenic | 30.0% |
| GAACATTTACAGTACTTTGT+TGG | - | chr3_4:56818317-56818336 | Msa0508710:intron | 30.0% | |
| ACATTTACAGTACTTTGTTG+GGG | - | chr3_4:56818319-56818338 | Msa0508710:intron | 30.0% | |
| ATATACAGTATGGTGAAACT+TGG | + | chr3_4:56818480-56818499 | None:intergenic | 30.0% | |
| CATCACTTTATTGTTTCCAT+TGG | - | chr3_4:56818529-56818548 | Msa0508710:intron | 30.0% | |
| ! | AATGTCAGTTGATATCCTAA+AGG | - | chr3_4:56818726-56818745 | Msa0508710:intron | 30.0% |
| !! | CAAATATGTTGATGATGTTG+TGG | - | chr3_4:56818834-56818853 | Msa0508710:intron | 30.0% |
| ! | GTTGATTAATTTTTCATCGC+AGG | - | chr3_4:56818905-56818924 | Msa0508710:intron | 30.0% |
| ! | ATTAATTTTTCATCGCAGGA+AGG | - | chr3_4:56818909-56818928 | Msa0508710:intron | 30.0% |
| ! | TTAATTTTTCATCGCAGGAA+GGG | - | chr3_4:56818910-56818929 | Msa0508710:intron | 30.0% |
| !! | AATTTCCCAATTTTGTTGTC+TGG | + | chr3_4:56818945-56818964 | None:intergenic | 30.0% |
| AAGCTTATCAAAATCAGATG+GGG | + | chr3_4:56819003-56819022 | None:intergenic | 30.0% | |
| CAAGCTTATCAAAATCAGAT+GGG | + | chr3_4:56819004-56819023 | None:intergenic | 30.0% | |
| ACAAGCTTATCAAAATCAGA+TGG | + | chr3_4:56819005-56819024 | None:intergenic | 30.0% | |
| !! | TCATCTATCATAGCTTTGTT+TGG | - | chr3_4:56819167-56819186 | Msa0508710:intron | 30.0% |
| CAGTCAGAATTACAAAATCT+GGG | + | chr3_4:56819294-56819313 | None:intergenic | 30.0% | |
| ACAGTCAGAATTACAAAATC+TGG | + | chr3_4:56819295-56819314 | None:intergenic | 30.0% | |
| ! | AGTTTCTGGAAAATATGACA+AGG | + | chr3_4:56819352-56819371 | None:intergenic | 30.0% |
| !! | TTTTTGTTGTATTTTGCGCA+TGG | - | chr3_4:56819412-56819431 | Msa0508710:CDS | 30.0% |
| GAGGAACAGCATATGAATTA+CGG | + | chr3_4:56813551-56813570 | None:intergenic | 35.0% | |
| TTTGTTTGGAAGCCAAAGTA+AGG | - | chr3_4:56813717-56813736 | Msa0508710:intron | 35.0% | |
| ATTGCTCGAACTAATCAGAT+AGG | - | chr3_4:56813843-56813862 | Msa0508710:CDS | 35.0% | |
| GACAAGATTAGAGAGTAAGT+TGG | - | chr3_4:56813919-56813938 | Msa0508710:intron | 35.0% | |
| GCACCTATTAGTAGAAAAGA+TGG | - | chr3_4:56813945-56813964 | Msa0508710:intron | 35.0% | |
| AGATGGTAGAAACTAGACTT+AGG | - | chr3_4:56813962-56813981 | Msa0508710:intron | 35.0% | |
| ! | GAAACTAGACTTAGGTTGTT+TGG | - | chr3_4:56813970-56813989 | Msa0508710:intron | 35.0% |
| AACGATAGTAGACCAAATAG+AGG | - | chr3_4:56814026-56814045 | Msa0508710:CDS | 35.0% | |
| ACGATAGTAGACCAAATAGA+GGG | - | chr3_4:56814027-56814046 | Msa0508710:CDS | 35.0% | |
| TCAGATGTTCATGCTCTTAA+TGG | + | chr3_4:56814302-56814321 | None:intergenic | 35.0% | |
| CTAATTCCCACATTAAGTGT+GGG | + | chr3_4:56814391-56814410 | None:intergenic | 35.0% | |
| TCAGATGTTCATGCTCTTAA+TGG | + | chr3_4:56814302-56814321 | None:intergenic | 35.0% | |
| CTAATTCCCACATTAAGTGT+GGG | + | chr3_4:56814391-56814410 | None:intergenic | 35.0% | |
| AGAAATTTAGGAACAGAACC+CGG | + | chr3_4:56814974-56814993 | None:intergenic | 35.0% | |
| ! | TTTTTGTCTAGATAAGGACG+AGG | - | chr3_4:56815018-56815037 | Msa0508710:intron | 35.0% |
| AGATTGAAGAGAAGTAGATC+TGG | - | chr3_4:56815304-56815323 | Msa0508710:intron | 35.0% | |
| CTAAGAGGAGAGAATAACTA+GGG | - | chr3_4:56815344-56815363 | Msa0508710:intron | 35.0% | |
| AACTTATAGGAGTGAATGGA+TGG | - | chr3_4:56815879-56815898 | Msa0508710:intron | 35.0% | |
| AAGAATCAGATAAGAGGGAA+TGG | - | chr3_4:56815973-56815992 | Msa0508710:intron | 35.0% | |
| TGACAACATTAGAAGAGAGT+TGG | - | chr3_4:56816038-56816057 | Msa0508710:intron | 35.0% | |
| GACAACATTAGAAGAGAGTT+GGG | - | chr3_4:56816039-56816058 | Msa0508710:intron | 35.0% | |
| ACAACATTAGAAGAGAGTTG+GGG | - | chr3_4:56816040-56816059 | Msa0508710:intron | 35.0% | |
| AGATGGTTGAAACTAGACTT+AGG | - | chr3_4:56816082-56816101 | Msa0508710:intron | 35.0% | |
| ! | TGTAATGAGAGTTGATCAGA+AGG | - | chr3_4:56816143-56816162 | Msa0508710:intron | 35.0% |
| TCAGATGTTCATGCTCTTAA+TGG | + | chr3_4:56814302-56814321 | None:intergenic | 35.0% | |
| CTAATTCCCACATTAAGTGT+GGG | + | chr3_4:56814391-56814410 | None:intergenic | 35.0% | |
| AACAAAAACTTGAGGAGCTT+AGG | + | chr3_4:56816827-56816846 | None:intergenic | 35.0% | |
| TCTGATTCATCTCATACAAG+AGG | + | chr3_4:56816912-56816931 | None:intergenic | 35.0% | |
| ! | AATTGTTCTGACCTTTTTCC+AGG | - | chr3_4:56817316-56817335 | Msa0508710:intron | 35.0% |
| !!! | CCTTTTGATTCACTTTTTGG+TGG | + | chr3_4:56817382-56817401 | None:intergenic | 35.0% |
| CCACCAAAAAGTGAATCAAA+AGG | - | chr3_4:56817379-56817398 | Msa0508710:intron | 35.0% | |
| AAAAGGAAGTCATAGTTGGA+TGG | - | chr3_4:56817396-56817415 | Msa0508710:intron | 35.0% | |
| !! | CTTTGAAATCCATATGACGT+AGG | - | chr3_4:56817508-56817527 | Msa0508710:intron | 35.0% |
| ! | CATTTTGAACCTACGTCATA+TGG | + | chr3_4:56817520-56817539 | None:intergenic | 35.0% |
| ! | GTTTCTTTAGAGATCATCAC+TGG | - | chr3_4:56817654-56817673 | Msa0508710:intron | 35.0% |
| ! | GTTTCTTTAGAGATCATCAC+TGG | - | chr3_4:56817654-56817673 | Msa0508710:intron | 35.0% |
| CAAATACACCACTAAAGAAG+AGG | + | chr3_4:56817812-56817831 | None:intergenic | 35.0% | |
| CTCTTCTTTAGTGGTGTATT+TGG | - | chr3_4:56817810-56817829 | Msa0508710:intron | 35.0% | |
| CTTCTCGAGAATAAAACTCA+TGG | + | chr3_4:56817930-56817949 | None:intergenic | 35.0% | |
| ACAGTCAAATGAATGGGATT+GGG | + | chr3_4:56817955-56817974 | None:intergenic | 35.0% | |
| AACAGTCAAATGAATGGGAT+TGG | + | chr3_4:56817956-56817975 | None:intergenic | 35.0% | |
| ! | GTTTGACACATAAGCTTTGA+TGG | + | chr3_4:56818007-56818026 | None:intergenic | 35.0% |
| ACAATTTATCTCTTGGAGAC+AGG | - | chr3_4:56818025-56818044 | Msa0508710:intron | 35.0% | |
| ACAGTTTCAAGAAATTCCAC+TGG | - | chr3_4:56818059-56818078 | Msa0508710:intron | 35.0% | |
| ATAGAGGGAGAAGAATAAGA+AGG | + | chr3_4:56818167-56818186 | None:intergenic | 35.0% | |
| CATTTACAGTACTTTGTTGG+GGG | - | chr3_4:56818320-56818339 | Msa0508710:intron | 35.0% | |
| GAGAAAATCAATCCAGTAGT+AGG | - | chr3_4:56818364-56818383 | Msa0508710:intron | 35.0% | |
| GATTGACACAACATTACCAA+TGG | + | chr3_4:56818548-56818567 | None:intergenic | 35.0% | |
| TTACTACTCACTTTATCGTC+TGG | - | chr3_4:56818876-56818895 | Msa0508710:intron | 35.0% | |
| TACTACTCACTTTATCGTCT+GGG | - | chr3_4:56818877-56818896 | Msa0508710:intron | 35.0% | |
| TTGCACCAGACAACAAAATT+GGG | - | chr3_4:56818937-56818956 | Msa0508710:intron | 35.0% | |
| AGCTTATCAAAATCAGATGG+GGG | + | chr3_4:56819002-56819021 | None:intergenic | 35.0% | |
| ! | TGTTACTGTGTTTTACGAAG+TGG | - | chr3_4:56819057-56819076 | Msa0508710:intron | 35.0% |
| ! | GTTACTGTGTTTTACGAAGT+GGG | - | chr3_4:56819058-56819077 | Msa0508710:intron | 35.0% |
| CTTGGCAGAAAAATTGAACA+CGG | - | chr3_4:56819265-56819284 | Msa0508710:CDS | 35.0% | |
| AATATGACAAGGAAAACCTC+CGG | + | chr3_4:56819341-56819360 | None:intergenic | 35.0% | |
| ATGCTGATACTACAAGTTTC+TGG | + | chr3_4:56819366-56819385 | None:intergenic | 35.0% | |
| GAATTGCAACACTGTGCAAT+TGG | + | chr3_4:56813373-56813392 | None:intergenic | 40.0% | |
| ! | TGATCAACGGATTCATTGTG+AGG | + | chr3_4:56813570-56813589 | None:intergenic | 40.0% |
| TCACAATGAATCCGTTGATC+AGG | - | chr3_4:56813569-56813588 | Msa0508710:CDS | 40.0% | |
| TAAAATGTAGATGGAGGCGA+GGG | + | chr3_4:56813600-56813619 | None:intergenic | 40.0% | |
| TTAAAATGTAGATGGAGGCG+AGG | + | chr3_4:56813601-56813620 | None:intergenic | 40.0% | |
| CTCGAACTAATCAGATAGGA+GGG | - | chr3_4:56813847-56813866 | Msa0508710:CDS | 40.0% | |
| ACTAATCAGATAGGAGGGAT+TGG | - | chr3_4:56813852-56813871 | Msa0508710:CDS | 40.0% | |
| CGATAGTAGACCAAATAGAG+GGG | - | chr3_4:56814028-56814047 | Msa0508710:CDS | 40.0% | |
| !! | GAATGAGTTGGTGAAAGACA+TGG | - | chr3_4:56814081-56814100 | Msa0508710:CDS | 40.0% |
| TTTCAGCTTCAAAAGCGAGA+AGG | + | chr3_4:56814253-56814272 | None:intergenic | 40.0% | |
| !!! | TCGCTTTTGAAGCTGAAACA+TGG | - | chr3_4:56814255-56814274 | Msa0508710:intron | 40.0% |
| !!! | CTTTTGAAGCTGAAACATGG+AGG | - | chr3_4:56814258-56814277 | Msa0508710:intron | 40.0% |
| GCTAATTCCCACATTAAGTG+TGG | + | chr3_4:56814392-56814411 | None:intergenic | 40.0% | |
| !! | GAATGAGTTGGTGAAAGACA+TGG | - | chr3_4:56814081-56814100 | Msa0508710:CDS | 40.0% |
| GCGTCATTTGATTCATGTAG+CGG | - | chr3_4:56814512-56814531 | Msa0508710:intron | 40.0% | |
| TTTCAGCTTCAAAAGCGAGA+AGG | + | chr3_4:56814253-56814272 | None:intergenic | 40.0% | |
| !!! | TCGCTTTTGAAGCTGAAACA+TGG | - | chr3_4:56814255-56814274 | Msa0508710:intron | 40.0% |
| !!! | CTTTTGAAGCTGAAACATGG+AGG | - | chr3_4:56814258-56814277 | Msa0508710:intron | 40.0% |
| GCTAATTCCCACATTAAGTG+TGG | + | chr3_4:56814392-56814411 | None:intergenic | 40.0% | |
| CGCTACATCTGGGAAATTAT+AGG | + | chr3_4:56814928-56814947 | None:intergenic | 40.0% | |
| TAGATAAGGACGAGGATGAA+GGG | - | chr3_4:56815026-56815045 | Msa0508710:intron | 40.0% | |
| CGAAGGAGAGAATGAGAAAA+AGG | - | chr3_4:56815212-56815231 | Msa0508710:intron | 40.0% | |
| GACGGATGATGAAGAGAAAA+TGG | - | chr3_4:56815267-56815286 | Msa0508710:intron | 40.0% | |
| TGAAGAGAAGTAGATCTGGA+TGG | - | chr3_4:56815308-56815327 | Msa0508710:intron | 40.0% | |
| GCTAAGAGGAGAGAATAACT+AGG | - | chr3_4:56815343-56815362 | Msa0508710:intron | 40.0% | |
| TTACAAGTTTGCCCTCAAGT+GGG | - | chr3_4:56815544-56815563 | Msa0508710:intron | 40.0% | |
| TAAGATCGAGGAACGTAACA+CGG | + | chr3_4:56815580-56815599 | None:intergenic | 40.0% | |
| TTCATTCCAGTTTCATGAGC+TGG | + | chr3_4:56815929-56815948 | None:intergenic | 40.0% | |
| GCGTCATTTGATTCATGTAG+CGG | - | chr3_4:56814512-56814531 | Msa0508710:intron | 40.0% | |
| !! | AAGCCTTATTCCACTAAGTG+GGG | + | chr3_4:56816288-56816307 | None:intergenic | 40.0% |
| !! | CAAGCCTTATTCCACTAAGT+GGG | + | chr3_4:56816289-56816308 | None:intergenic | 40.0% |
| GCTAATTCCCACATTAAGTG+TGG | + | chr3_4:56814392-56814411 | None:intergenic | 40.0% | |
| CGCTAGATCTGGGAAATTAT+AGG | + | chr3_4:56816769-56816788 | None:intergenic | 40.0% | |
| ! | TTTTTGTCTAGATAAGGGCG+AGG | - | chr3_4:56816859-56816878 | Msa0508710:intron | 40.0% |
| GAAGAAATAGACACGACTAC+AGG | + | chr3_4:56817214-56817233 | None:intergenic | 40.0% | |
| GGGACAACAACATATTATGG+TGG | + | chr3_4:56817361-56817380 | None:intergenic | 40.0% | |
| GGTGGGACAACAACATATTA+TGG | + | chr3_4:56817364-56817383 | None:intergenic | 40.0% | |
| ! | TGATATCTGGAAGTGTGGAA+TGG | - | chr3_4:56817547-56817566 | Msa0508710:intron | 40.0% |
| ! | TGTTTTATGGGAAGACCCAT+TGG | - | chr3_4:56817616-56817635 | Msa0508710:intron | 40.0% |
| ! | GTTTCTTTAGGGATCATCAC+TGG | - | chr3_4:56817738-56817757 | Msa0508710:intron | 40.0% |
| CTAAGTTGCCTCTTCTTTAG+TGG | - | chr3_4:56817801-56817820 | Msa0508710:intron | 40.0% | |
| ! | AGTGGTGTATTTGGTGATCT+TGG | - | chr3_4:56817819-56817838 | Msa0508710:intron | 40.0% |
| ! | GTGGTGTATTTGGTGATCTT+GGG | - | chr3_4:56817820-56817839 | Msa0508710:intron | 40.0% |
| GTTGATACAGGATTCACAAC+TGG | - | chr3_4:56817973-56817992 | Msa0508710:intron | 40.0% | |
| ATACAGGATTCACAACTGGA+GGG | - | chr3_4:56817977-56817996 | Msa0508710:intron | 40.0% | |
| AATTCCACTGGATCTTCGTA+TGG | - | chr3_4:56818071-56818090 | Msa0508710:intron | 40.0% | |
| ACACTTACACTACCTACTAC+TGG | + | chr3_4:56818379-56818398 | None:intergenic | 40.0% | |
| CTCAATTAGAGGCTGTCATT+TGG | + | chr3_4:56818457-56818476 | None:intergenic | 40.0% | |
| GTGAAACTTGGCTCAATTAG+AGG | + | chr3_4:56818468-56818487 | None:intergenic | 40.0% | |
| TCACTTCTGAACCAAGCAAT+TGG | - | chr3_4:56818582-56818601 | Msa0508710:intron | 40.0% | |
| TGAAAAGACCTCCAATTGCT+TGG | + | chr3_4:56818596-56818615 | None:intergenic | 40.0% | |
| AAAATCCCCTCTGACTTAGA+AGG | - | chr3_4:56818763-56818782 | Msa0508710:intron | 40.0% | |
| GTTGCACCAGACAACAAAAT+TGG | - | chr3_4:56818936-56818955 | Msa0508710:intron | 40.0% | |
| AAATCAGATGGGGGCAATTT+AGG | + | chr3_4:56818993-56819012 | None:intergenic | 40.0% | |
| CACAAGAACTCAACTTAGCT+TGG | - | chr3_4:56819247-56819266 | Msa0508710:intron | 40.0% | |
| ATATGACAAGGAAAACCTCC+GGG | + | chr3_4:56819340-56819359 | None:intergenic | 40.0% | |
| TTCTCAGAGCTTATCCGCTA+AGG | - | chr3_4:56813410-56813429 | Msa0508710:three_prime_UTR | 45.0% | |
| CAGATGTTGAATACGACGAG+AGG | + | chr3_4:56813441-56813460 | None:intergenic | 45.0% | |
| CTTGGATCTGTTCTTCCTGA+TGG | - | chr3_4:56813513-56813532 | Msa0508710:three_prime_UTR | 45.0% | |
| CGGATATCAACAGTTCCATC+AGG | + | chr3_4:56813531-56813550 | None:intergenic | 45.0% | |
| GCTCGAACTAATCAGATAGG+AGG | - | chr3_4:56813846-56813865 | Msa0508710:CDS | 45.0% | |
| TCTAGGTCTTCCCCTCTATT+TGG | + | chr3_4:56814041-56814060 | None:intergenic | 45.0% | |
| GCGTCGTTTGATTCATGTAG+CGG | - | chr3_4:56814115-56814134 | Msa0508710:intron | 45.0% | |
| !! | AAGCCTTATTCCACCAAGTG+GGG | + | chr3_4:56814142-56814161 | None:intergenic | 45.0% |
| !! | CAAGCCTTATTCCACCAAGT+GGG | + | chr3_4:56814143-56814162 | None:intergenic | 45.0% |
| TTAGCTGCCCACACTTAATG+TGG | - | chr3_4:56814381-56814400 | Msa0508710:intron | 45.0% | |
| TAGCTGCCCACACTTAATGT+GGG | - | chr3_4:56814382-56814401 | Msa0508710:intron | 45.0% | |
| !! | AAGCCTTATTCCACCAAGTG+GGG | + | chr3_4:56814142-56814161 | None:intergenic | 45.0% |
| !! | CAAGCCTTATTCCACCAAGT+GGG | + | chr3_4:56814143-56814162 | None:intergenic | 45.0% |
| TTAGCTGCCCACACTTAATG+TGG | - | chr3_4:56814381-56814400 | Msa0508710:intron | 45.0% | |
| TAGCTGCCCACACTTAATGT+GGG | - | chr3_4:56814382-56814401 | Msa0508710:intron | 45.0% | |
| CTAGATAAGGACGAGGATGA+AGG | - | chr3_4:56815025-56815044 | Msa0508710:intron | 45.0% | |
| ATCAAGGTCGTAGCACGTTT+GGG | + | chr3_4:56815133-56815152 | None:intergenic | 45.0% | |
| AAGTAGATCTGGATGGTAGC+AGG | - | chr3_4:56815315-56815334 | Msa0508710:intron | 45.0% | |
| GTTACAAGTTTGCCCTCAAG+TGG | - | chr3_4:56815543-56815562 | Msa0508710:intron | 45.0% | |
| GTTCGTAAGAACCCACTTGA+GGG | + | chr3_4:56815558-56815577 | None:intergenic | 45.0% | |
| AACGAGTTCCTACGTAGGAT+CGG | + | chr3_4:56815621-56815640 | None:intergenic | 45.0% | |
| ! | TGAGAGTTGATCAGAAGGAG+AGG | - | chr3_4:56816148-56816167 | Msa0508710:intron | 45.0% |
| !! | CCAAGCCTTATTCCACTAAG+TGG | + | chr3_4:56816290-56816309 | None:intergenic | 45.0% |
| CCACTTAGTGGAATAAGGCT+TGG | - | chr3_4:56816287-56816306 | Msa0508710:intron | 45.0% | |
| TTAGCTGCCCACACTTAATG+TGG | - | chr3_4:56814381-56814400 | Msa0508710:intron | 45.0% | |
| TAGCTGCCCACACTTAATGT+GGG | - | chr3_4:56814382-56814401 | Msa0508710:intron | 45.0% | |
| ATCCAACGCAACCTGGAAAA+AGG | + | chr3_4:56817330-56817349 | None:intergenic | 45.0% | |
| ACTCTATATCCAACGCAACC+TGG | + | chr3_4:56817337-56817356 | None:intergenic | 45.0% | |
| CACTCTGATATCTGGAAGTG+TGG | - | chr3_4:56817542-56817561 | Msa0508710:intron | 45.0% | |
| ! | TCTGGAAGTGTGGAATGGAA+TGG | - | chr3_4:56817552-56817571 | Msa0508710:intron | 45.0% |
| ! | GTGTATTTGGTGATCTTGGG+AGG | - | chr3_4:56817823-56817842 | Msa0508710:intron | 45.0% |
| TGCAGGTATTCAACTGGACT+TGG | - | chr3_4:56817880-56817899 | Msa0508710:intron | 45.0% | |
| TCAACTGGACTTGGAGTAAC+TGG | - | chr3_4:56817889-56817908 | Msa0508710:intron | 45.0% | |
| GATACAGGATTCACAACTGG+AGG | - | chr3_4:56817976-56817995 | Msa0508710:intron | 45.0% | |
| TACAGGATTCACAACTGGAG+GGG | - | chr3_4:56817978-56817997 | Msa0508710:intron | 45.0% | |
| TCAACCATACGAAGATCCAG+TGG | + | chr3_4:56818078-56818097 | None:intergenic | 45.0% | |
| ATGGTTGAAGCTGAGCGAAT+TGG | - | chr3_4:56818090-56818109 | Msa0508710:intron | 45.0% | |
| CTTCTGAACCAAGCAATTGG+AGG | - | chr3_4:56818585-56818604 | Msa0508710:intron | 45.0% | |
| TGTCAACAGTGGTTGCCTTT+AGG | + | chr3_4:56818744-56818763 | None:intergenic | 45.0% | |
| ! | AGAGGGGATTTTGTCAACAG+TGG | + | chr3_4:56818755-56818774 | None:intergenic | 45.0% |
| TCCATGCCTTCTAAGTCAGA+GGG | + | chr3_4:56818772-56818791 | None:intergenic | 45.0% | |
| TTCCATGCCTTCTAAGTCAG+AGG | + | chr3_4:56818773-56818792 | None:intergenic | 45.0% | |
| !! | AGAAGGCATGGAAGCATCAA+TGG | - | chr3_4:56818780-56818799 | Msa0508710:intron | 45.0% |
| GTTTCAGGATCACTTGCTCA+TGG | - | chr3_4:56819208-56819227 | Msa0508710:intron | 45.0% | |
| TATGACAAGGAAAACCTCCG+GGG | + | chr3_4:56819339-56819358 | None:intergenic | 45.0% | |
| !! | TTCATTAAAAAAATTATTAT+AGG | + | chr3_4:56816969-56816988 | None:intergenic | 5.0% |
| !! | AGCGGATAAGCTCTGAGAAG+AGG | + | chr3_4:56813409-56813428 | None:intergenic | 50.0% |
| GACGAGAGGATGAACCTTAG+CGG | + | chr3_4:56813427-56813446 | None:intergenic | 50.0% | |
| ATGACGCGTTCAGCTTGATC+AGG | + | chr3_4:56813483-56813502 | None:intergenic | 50.0% | |
| GATCAAGCTGAACGCGTCAT+TGG | - | chr3_4:56813483-56813502 | Msa0508710:three_prime_UTR | 50.0% | |
| GCATGTAGAGAGAAGACGTC+TGG | - | chr3_4:56813993-56814012 | Msa0508710:CDS | 50.0% | |
| !! | CCAAGCCTTATTCCACCAAG+TGG | + | chr3_4:56814144-56814163 | None:intergenic | 50.0% |
| ! | CCACTTGGTGGAATAAGGCT+TGG | - | chr3_4:56814141-56814160 | Msa0508710:intron | 50.0% |
| !! | CCAAGCCTTATTCCACCAAG+TGG | + | chr3_4:56814144-56814163 | None:intergenic | 50.0% |
| ! | CCACTTGGTGGAATAAGGCT+TGG | - | chr3_4:56814141-56814160 | Msa0508710:intron | 50.0% |
| ! | CCACTCTCTAGCTTGATCAC+CGG | - | chr3_4:56814952-56814971 | Msa0508710:intron | 50.0% |
| ! | CACTCTCTAGCTTGATCACC+GGG | - | chr3_4:56814953-56814972 | Msa0508710:intron | 50.0% |
| GATCAAGGTCGTAGCACGTT+TGG | + | chr3_4:56815134-56815153 | None:intergenic | 50.0% | |
| AACGTGCTACGACCTTGATC+TGG | - | chr3_4:56815134-56815153 | Msa0508710:intron | 50.0% | |
| ACGTGCTACGACCTTGATCT+GGG | - | chr3_4:56815135-56815154 | Msa0508710:intron | 50.0% | |
| CTGGAGTCATGTCTCTTCGA+AGG | - | chr3_4:56815195-56815214 | Msa0508710:intron | 50.0% | |
| TAGATCTGGATGGTAGCAGG+CGG | - | chr3_4:56815318-56815337 | Msa0508710:intron | 50.0% | |
| GGTTCGTAAGAACCCACTTG+AGG | + | chr3_4:56815559-56815578 | None:intergenic | 50.0% | |
| AGTTCCTACGTAGGATCGGT+GGG | + | chr3_4:56815617-56815636 | None:intergenic | 50.0% | |
| TCAGGAACGAGTTCCTACGT+AGG | + | chr3_4:56815626-56815645 | None:intergenic | 50.0% | |
| ! | GAGGTGTCAGCAATGTAGTC+AGG | + | chr3_4:56815644-56815663 | None:intergenic | 50.0% |
| TTCGCTCCAGCTCATGAAAC+TGG | - | chr3_4:56815920-56815939 | Msa0508710:intron | 50.0% | |
| GGACCCCACTTAGTGGAATA+AGG | - | chr3_4:56816282-56816301 | Msa0508710:intron | 50.0% | |
| AAGTGGCTGTCGCTAGATCT+GGG | + | chr3_4:56816779-56816798 | None:intergenic | 50.0% | |
| AAAGTGGCTGTCGCTAGATC+TGG | + | chr3_4:56816780-56816799 | None:intergenic | 50.0% | |
| ! | ATCTAGCGACAGCCACTTTC+TGG | - | chr3_4:56816781-56816800 | Msa0508710:intron | 50.0% |
| !! | CCACTTTCTGGCTTGATCAC+CGG | - | chr3_4:56816793-56816812 | Msa0508710:intron | 50.0% |
| !! | CACTTTCTGGCTTGATCACC+GGG | - | chr3_4:56816794-56816813 | Msa0508710:intron | 50.0% |
| AGGAGCTTAGGAACAGAACC+CGG | + | chr3_4:56816815-56816834 | None:intergenic | 50.0% | |
| ! | GACCTTTTTCCAGGTTGCGT+TGG | - | chr3_4:56817325-56817344 | Msa0508710:intron | 50.0% |
| ACTGGACTTGGAGTAACTGG+TGG | - | chr3_4:56817892-56817911 | Msa0508710:intron | 50.0% | |
| ACAGGATTCACAACTGGAGG+GGG | - | chr3_4:56817979-56817998 | Msa0508710:intron | 50.0% | |
| GAGCTTCAGGACACAAGCTT+AGG | + | chr3_4:56818232-56818251 | None:intergenic | 50.0% | |
| AATAGGCAACCACGAGCTTC+AGG | + | chr3_4:56818245-56818264 | None:intergenic | 50.0% | |
| CCATGCCTTCTAAGTCAGAG+GGG | + | chr3_4:56818771-56818790 | None:intergenic | 50.0% | |
| GCTTGTGAACGACAGCTTAC+AGG | - | chr3_4:56819019-56819038 | Msa0508710:intron | 50.0% | |
| ACGCGTGCTTCATCTGTTTC+AGG | - | chr3_4:56819193-56819212 | Msa0508710:intron | 50.0% | |
| TTCTGACTGTCTCTGAGCGA+AGG | - | chr3_4:56819305-56819324 | Msa0508710:CDS | 50.0% | |
| ! | GAGCGAAGGCAATTTTTCCC+CGG | - | chr3_4:56819319-56819338 | Msa0508710:CDS | 50.0% |
| ! | TTTTGCGCATGGCAACGCAT+AGG | - | chr3_4:56819423-56819442 | Msa0508710:CDS | 50.0% |
| TCCAACCTCCTCTGCGAACA+TGG | - | chr3_4:56813341-56813360 | Msa0508710:three_prime_UTR | 55.0% | |
| CGCGTCATTGGAACGCTTCT+TGG | - | chr3_4:56813495-56813514 | Msa0508710:three_prime_UTR | 55.0% | |
| CGAGGGAAGGACCTGATCAA+CGG | + | chr3_4:56813583-56813602 | None:intergenic | 55.0% | |
| ATGTAGATGGAGGCGAGGGA+AGG | + | chr3_4:56813596-56813615 | None:intergenic | 55.0% | |
| !! | TTCATGTAGCGGACCCCACT+TGG | - | chr3_4:56814126-56814145 | Msa0508710:intron | 55.0% |
| ! | GGACCCCACTTGGTGGAATA+AGG | - | chr3_4:56814136-56814155 | Msa0508710:intron | 55.0% |
| !! | TTCATGTAGCGGACCCCACT+TGG | - | chr3_4:56814126-56814145 | Msa0508710:intron | 55.0% |
| ! | GGACCCCACTTGGTGGAATA+AGG | - | chr3_4:56814136-56814155 | Msa0508710:intron | 55.0% |
| GAGTGGCTGTCGCTACATCT+GGG | + | chr3_4:56814938-56814957 | None:intergenic | 55.0% | |
| AGAGTGGCTGTCGCTACATC+TGG | + | chr3_4:56814939-56814958 | None:intergenic | 55.0% | |
| CCGGTGATCAAGCTAGAGAG+TGG | + | chr3_4:56814955-56814974 | None:intergenic | 55.0% | |
| TTCTGACACCCAAGGTAGCC+AGG | - | chr3_4:56815060-56815079 | Msa0508710:intron | 55.0% | |
| GACTCGATCCTGGCTACCTT+GGG | + | chr3_4:56815071-56815090 | None:intergenic | 55.0% | |
| ATCGTGCGATCCTACGTGCT+GGG | + | chr3_4:56815093-56815112 | None:intergenic | 55.0% | |
| AGGTCGTAGCACGTTTGGGT+GGG | + | chr3_4:56815129-56815148 | None:intergenic | 55.0% | |
| AAGGTCGTAGCACGTTTGGG+TGG | + | chr3_4:56815130-56815149 | None:intergenic | 55.0% | |
| GGCAAACACGACCCAGATCA+AGG | + | chr3_4:56815149-56815168 | None:intergenic | 55.0% | |
| GGTGAAGGGACGTAAGATCG+AGG | + | chr3_4:56815592-56815611 | None:intergenic | 55.0% | |
| GAGTTCCTACGTAGGATCGG+TGG | + | chr3_4:56815618-56815637 | None:intergenic | 55.0% | |
| !! | ATGTAGCGGACCCCACTTAG+TGG | - | chr3_4:56816275-56816294 | Msa0508710:intron | 55.0% |
| CCGGTGATCAAGCCAGAAAG+TGG | + | chr3_4:56816796-56816815 | None:intergenic | 55.0% | |
| AGCTTGTGTCCTGAAGCTCG+TGG | - | chr3_4:56818233-56818252 | Msa0508710:intron | 55.0% | |
| CCCCTCTGACTTAGAAGGCA+TGG | - | chr3_4:56818768-56818787 | Msa0508710:intron | 55.0% | |
| ! | CGAAGGCAATTTTTCCCCGG+AGG | - | chr3_4:56819322-56819341 | Msa0508710:CDS | 55.0% |
| GCCATGTTCGCAGAGGAGGT+TGG | + | chr3_4:56813345-56813364 | None:intergenic | 60.0% | |
| TGACGCCATGTTCGCAGAGG+AGG | + | chr3_4:56813349-56813368 | None:intergenic | 60.0% | |
| GGTTGACGCCATGTTCGCAG+AGG | + | chr3_4:56813352-56813371 | None:intergenic | 60.0% | |
| !! | ATGTAGCGGACCCCACTTGG+TGG | - | chr3_4:56814129-56814148 | Msa0508710:intron | 60.0% |
| !! | ATGTAGCGGACCCCACTTGG+TGG | - | chr3_4:56814129-56814148 | Msa0508710:intron | 60.0% |
| GGACTCGATCCTGGCTACCT+TGG | + | chr3_4:56815072-56815091 | None:intergenic | 60.0% | |
| TACGTGCTGGGACTCGATCC+TGG | + | chr3_4:56815081-56815100 | None:intergenic | 60.0% | |
| AGGATCGAGTCCCAGCACGT+AGG | - | chr3_4:56815080-56815099 | Msa0508710:intron | 60.0% | |
| GATCGTGCGATCCTACGTGC+TGG | + | chr3_4:56815094-56815113 | None:intergenic | 60.0% | |
| GGTCGTAGCACGTTTGGGTG+GGG | + | chr3_4:56815128-56815147 | None:intergenic | 60.0% | |
| !! | AGGATCGGTGGGCTGGTGAA+GGG | + | chr3_4:56815606-56815625 | None:intergenic | 60.0% |
| !! | TAGGATCGGTGGGCTGGTGA+AGG | + | chr3_4:56815607-56815626 | None:intergenic | 60.0% |
| TGCGCATGGCAACGCATAGG+TGG | - | chr3_4:56819426-56819445 | Msa0508710:CDS | 60.0% | |
| GGTAGCAGGCGGCAGCTAAG+AGG | - | chr3_4:56815329-56815348 | Msa0508710:intron | 65.0% | |
| CCTACGTAGGATCGGTGGGC+TGG | + | chr3_4:56815613-56815632 | None:intergenic | 65.0% | |
| CCAGCCCACCGATCCTACGT+AGG | - | chr3_4:56815610-56815629 | Msa0508710:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 56813275 | 56819570 | 56813275 | ID=Msa0508710;Name=Msa0508710 |
| chr3_4 | mRNA | 56813275 | 56819570 | 56813275 | ID=Msa0508710-mRNA-1;Parent=Msa0508710;Name=Msa0508710-mRNA-1;_AED=0.08;_eAED=0.08;_QI=85|1|1|1|1|1|6|266|288 |
| chr3_4 | exon | 56813275 | 56813630 | 56813275 | ID=Msa0508710-mRNA-1:exon:12884;Parent=Msa0508710-mRNA-1 |
| chr3_4 | exon | 56813805 | 56813918 | 56813805 | ID=Msa0508710-mRNA-1:exon:12883;Parent=Msa0508710-mRNA-1 |
| chr3_4 | exon | 56813990 | 56814111 | 56813990 | ID=Msa0508710-mRNA-1:exon:12882;Parent=Msa0508710-mRNA-1 |
| chr3_4 | exon | 56814731 | 56814960 | 56814731 | ID=Msa0508710-mRNA-1:exon:12881;Parent=Msa0508710-mRNA-1 |
| chr3_4 | exon | 56815428 | 56815507 | 56815428 | ID=Msa0508710-mRNA-1:exon:12880;Parent=Msa0508710-mRNA-1 |
| chr3_4 | exon | 56819255 | 56819570 | 56819255 | ID=Msa0508710-mRNA-1:exon:12879;Parent=Msa0508710-mRNA-1 |
| chr3_4 | five_prime_UTR | 56819486 | 56819570 | 56819486 | ID=Msa0508710-mRNA-1:five_prime_utr;Parent=Msa0508710-mRNA-1 |
| chr3_4 | CDS | 56819255 | 56819485 | 56819255 | ID=Msa0508710-mRNA-1:cds;Parent=Msa0508710-mRNA-1 |
| chr3_4 | CDS | 56815428 | 56815507 | 56815428 | ID=Msa0508710-mRNA-1:cds;Parent=Msa0508710-mRNA-1 |
| chr3_4 | CDS | 56814731 | 56814960 | 56814731 | ID=Msa0508710-mRNA-1:cds;Parent=Msa0508710-mRNA-1 |
| chr3_4 | CDS | 56813990 | 56814111 | 56813990 | ID=Msa0508710-mRNA-1:cds;Parent=Msa0508710-mRNA-1 |
| chr3_4 | CDS | 56813805 | 56813918 | 56813805 | ID=Msa0508710-mRNA-1:cds;Parent=Msa0508710-mRNA-1 |
| chr3_4 | CDS | 56813541 | 56813630 | 56813541 | ID=Msa0508710-mRNA-1:cds;Parent=Msa0508710-mRNA-1 |
| chr3_4 | three_prime_UTR | 56813275 | 56813540 | 56813275 | ID=Msa0508710-mRNA-1:three_prime_utr;Parent=Msa0508710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
