Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463080 | XP_003600862.1 | 98.611 | 288 | 4 | 0 | 1 | 288 | 1 | 288 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463080 | sp|O04202|EIF3F_ARATH | 75.945 | 291 | 66 | 1 | 2 | 288 | 3 | 293 | 1.68e-159 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463080 | B7FK44 | 98.611 | 288 | 4 | 0 | 1 | 288 | 1 | 288 | 0.0 | 584 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089540 | Msa0463080 | 0.817116 | 3.897202e-52 | -8.615850e-47 |
| Msa0237180 | Msa0463080 | 0.802561 | 5.291378e-49 | -8.615850e-47 |
| Msa0432260 | Msa0463080 | -0.806545 | 7.809647e-50 | -8.615850e-47 |
| Msa0463080 | Msa0476730 | -0.828466 | 8.852495e-55 | -8.615850e-47 |
| Msa0463080 | Msa0508710 | 0.820503 | 6.625860e-53 | -8.615850e-47 |
| Msa0463080 | Msa0540160 | -0.803817 | 2.908800e-49 | -8.615850e-47 |
| Msa0463080 | Msa0685390 | -0.800118 | 1.674473e-48 | -8.615850e-47 |
| Msa0463080 | Msa0741600 | -0.808179 | 3.517116e-50 | -8.615850e-47 |
| Msa0463080 | Msa0871420 | 0.812251 | 4.658092e-51 | -8.615850e-47 |
| Msa0463080 | Msa0902340 | 0.810787 | 9.686588e-51 | -8.615850e-47 |
| Msa0463080 | Msa1026710 | 0.840055 | 1.094564e-57 | -8.615850e-47 |
| Msa0463080 | Msa1321490 | 0.804537 | 2.059578e-49 | -8.615850e-47 |
| Msa0463080 | Msa1347610 | 0.842457 | 2.555926e-58 | -8.615850e-47 |
| Msa0463080 | Msa1403520 | 0.802036 | 6.787340e-49 | -8.615850e-47 |
| Msa0463080 | Msa1414560 | -0.801418 | 9.089441e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463080 | MtrunA17_Chr3g0113201 | 98.611 | 288 | 4 | 0 | 1 | 288 | 1 | 288 | 0.0 | 584 |
| Msa0463080 | MtrunA17_Chr5g0436671 | 88.889 | 288 | 28 | 1 | 1 | 288 | 1 | 284 | 0.0 | 521 |
| Msa0463080 | MtrunA17_Chr3g0113191 | 33.096 | 281 | 170 | 7 | 17 | 283 | 10 | 286 | 1.07e-34 | 127 |
| Msa0463080 | MtrunA17_Chr5g0436641 | 32.841 | 271 | 165 | 6 | 25 | 282 | 19 | 285 | 1.92e-34 | 127 |
| Msa0463080 | MtrunA17_Chr5g0436681 | 75.000 | 40 | 10 | 0 | 182 | 221 | 16 | 55 | 5.25e-13 | 62.8 |
| Msa0463080 | MtrunA17_Chr3g0079641 | 23.856 | 306 | 195 | 6 | 14 | 284 | 2 | 304 | 5.25e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463080 | AT2G39990.1 | 75.945 | 291 | 66 | 1 | 2 | 288 | 3 | 293 | 1.70e-160 | 448 |
| Msa0463080 | AT3G11270.2 | 32.979 | 282 | 169 | 7 | 17 | 282 | 5 | 282 | 1.73e-36 | 132 |
| Msa0463080 | AT3G11270.1 | 32.632 | 285 | 169 | 7 | 17 | 282 | 5 | 285 | 5.01e-36 | 131 |
| Msa0463080 | AT5G05780.2 | 31.560 | 282 | 173 | 7 | 17 | 282 | 5 | 282 | 1.30e-33 | 125 |
| Msa0463080 | AT5G05780.1 | 31.228 | 285 | 173 | 7 | 17 | 282 | 5 | 285 | 3.42e-33 | 124 |
| Msa0463080 | AT4G26430.1 | 24.342 | 304 | 191 | 7 | 16 | 284 | 4 | 303 | 2.96e-13 | 69.3 |
| Msa0463080 | AT5G56280.1 | 24.752 | 303 | 191 | 7 | 16 | 284 | 4 | 303 | 1.12e-12 | 67.8 |
Find 76 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGTCATTGGAACGCTTCT+TGG | 0.210700 | 3_3:-62346386 | Msa0463080:CDS |
| GTTGCACCAGACAACAAAAT+TGG | 0.229921 | 3_3:-62341933 | Msa0463080:CDS |
| ACAGTCAGAATTACAAAATC+TGG | 0.275877 | 3_3:+62341577 | None:intergenic |
| GGTGGGACAACAACATATTA+TGG | 0.277706 | 3_3:+62343513 | None:intergenic |
| TGTCAACAGTGGTTGCCTTT+AGG | 0.305583 | 3_3:+62342128 | None:intergenic |
| GTTTGACACATAAGCTTTGA+TGG | 0.319915 | 3_3:+62342870 | None:intergenic |
| TTTCTTCTATATCTCGTATA+AGG | 0.321676 | 3_3:-62341420 | Msa0463080:three_prime_UTR |
| CTTGGATCTGTTCTTCCTGA+TGG | 0.343100 | 3_3:-62346368 | Msa0463080:CDS |
| GCTTGTGAACGACAGCTTAC+AGG | 0.343421 | 3_3:-62341850 | Msa0463080:intron |
| TCAACTGGACTTGGAGTAAC+TGG | 0.372693 | 3_3:-62342985 | Msa0463080:CDS |
| GTGTCAAACAATTTATCTCT+TGG | 0.383210 | 3_3:-62342856 | Msa0463080:CDS |
| TATTTATGCAGGTATTCAAC+TGG | 0.393038 | 3_3:-62343000 | Msa0463080:intron |
| ATTCATTTGACTGTTGATAC+AGG | 0.396286 | 3_3:-62342913 | Msa0463080:CDS |
| GATCAAGCTGAACGCGTCAT+TGG | 0.409335 | 3_3:-62346398 | Msa0463080:CDS |
| AACAGTCAAATGAATGGGAT+TGG | 0.410536 | 3_3:+62342921 | None:intergenic |
| TGCAGGTATTCAACTGGACT+TGG | 0.422441 | 3_3:-62342994 | Msa0463080:intron |
| AAAATCCCCTCTGACTTAGA+AGG | 0.446924 | 3_3:-62342106 | Msa0463080:CDS |
| AGAAGGCATGGAAGCATCAA+TGG | 0.461890 | 3_3:-62342089 | Msa0463080:CDS |
| AATCAAAAGGAAGTCATAGT+TGG | 0.465079 | 3_3:-62343482 | Msa0463080:CDS |
| TCACAATGAATCCGTTGATC+AGG | 0.465189 | 3_3:-62346312 | Msa0463080:intron |
| TGTATCAACAGTCAAATGAA+TGG | 0.465420 | 3_3:+62342915 | None:intergenic |
| TCCAACCTCCTCTGCGAACA+TGG | 0.475173 | 3_3:-62346540 | Msa0463080:exon |
| TTGCACCAGACAACAAAATT+GGG | 0.482472 | 3_3:-62341932 | Msa0463080:CDS |
| ATGGTTGAAGCTGAGCGAAT+TGG | 0.484794 | 3_3:-62342784 | Msa0463080:CDS |
| GAGGAACAGCATATGAATTA+CGG | 0.486958 | 3_3:+62346333 | None:intergenic |
| ACAATTTATCTCTTGGAGAC+AGG | 0.488454 | 3_3:-62342849 | Msa0463080:CDS |
| ACAGTCAAATGAATGGGATT+GGG | 0.491042 | 3_3:+62342922 | None:intergenic |
| ATATAGAAGAAAACCACCTA+TGG | 0.493523 | 3_3:+62341431 | None:intergenic |
| TTCTCAGAGCTTATCCGCTA+AGG | 0.495822 | 3_3:-62346471 | Msa0463080:CDS |
| GTATCAACAGTCAAATGAAT+GGG | 0.496605 | 3_3:+62342916 | None:intergenic |
| CGGATATCAACAGTTCCATC+AGG | 0.497957 | 3_3:+62346353 | None:intergenic |
| CCCCTCTGACTTAGAAGGCA+TGG | 0.501688 | 3_3:-62342101 | Msa0463080:CDS |
| GTTGATACAGGATTCACAAC+TGG | 0.502330 | 3_3:-62342901 | Msa0463080:CDS |
| ATGACGCGTTCAGCTTGATC+AGG | 0.505348 | 3_3:+62346401 | None:intergenic |
| AAATATGACAAGGAAACCTC+CGG | 0.506001 | 3_3:+62341531 | None:intergenic |
| CACAAGAACTCAACTTAGCT+TGG | 0.506158 | 3_3:-62341622 | Msa0463080:CDS |
| ACAAGCTTATCAAAATCAGA+TGG | 0.513873 | 3_3:+62341867 | None:intergenic |
| CAAGCTTATCAAAATCAGAT+GGG | 0.536179 | 3_3:+62341868 | None:intergenic |
| CTTCTCGAGAATAAAACTCA+TGG | 0.540683 | 3_3:+62342947 | None:intergenic |
| CAGTCAGAATTACAAAATCT+GGG | 0.544157 | 3_3:+62341578 | None:intergenic |
| ACACGTCTTGTGAGCAGCGA+AGG | 0.545362 | 3_3:-62346570 | Msa0463080:five_prime_UTR |
| GTTTCAGGATCACTTGCTCA+TGG | 0.545819 | 3_3:-62341661 | Msa0463080:intron |
| TGACGCCATGTTCGCAGAGG+AGG | 0.548240 | 3_3:+62346535 | None:intergenic |
| AATGTCAGTTGATATCCTAA+AGG | 0.558985 | 3_3:-62342143 | Msa0463080:intron |
| GCCATGTTCGCAGAGGAGGT+TGG | 0.571219 | 3_3:+62346539 | None:intergenic |
| AATATGACAAGGAAACCTCC+GGG | 0.574322 | 3_3:+62341532 | None:intergenic |
| GAATTGCAACACTGTGCGAT+TGG | 0.579767 | 3_3:+62346511 | None:intergenic |
| TCCATGCCTTCTAAGTCAGA+GGG | 0.582710 | 3_3:+62342100 | None:intergenic |
| AATCCCACTGGATCTTCGTA+TGG | 0.586635 | 3_3:-62342803 | Msa0463080:CDS |
| TTCTGACTGTCTCTGAGCGA+AGG | 0.593642 | 3_3:-62341564 | Msa0463080:three_prime_UTR |
| CAAATATGTTGATGATGTTG+TGG | 0.594015 | 3_3:-62342035 | Msa0463080:intron |
| AAAAGGAAGTCATAGTTGGA+TGG | 0.597430 | 3_3:-62343478 | Msa0463080:intron |
| AGCGGATAAGCTCTGAGAAG+AGG | 0.597938 | 3_3:+62346475 | None:intergenic |
| TGCGCATGGCAACCCATAGG+TGG | 0.597966 | 3_3:-62341444 | Msa0463080:three_prime_UTR |
| TTCCATGCCTTCTAAGTCAG+AGG | 0.599344 | 3_3:+62342099 | None:intergenic |
| CGAGGGAAGGACCTGATCAA+CGG | 0.606460 | 3_3:+62346301 | None:intergenic |
| GACGAGAGGATGAACCTTAG+CGG | 0.606488 | 3_3:+62346457 | None:intergenic |
| ACAGGATTCACAACTGGAGG+GGG | 0.607665 | 3_3:-62342895 | Msa0463080:CDS |
| TATAGAAGAAAACCACCTAT+GGG | 0.608515 | 3_3:+62341432 | None:intergenic |
| AAATTTATATCAGATGCAGT+AGG | 0.618068 | 3_3:-62341909 | Msa0463080:CDS |
| GATACAGGATTCACAACTGG+AGG | 0.619089 | 3_3:-62342898 | Msa0463080:CDS |
| ACTGGACTTGGAGTAACTGG+TGG | 0.625290 | 3_3:-62342982 | Msa0463080:CDS |
| TGATCAACGGATTCATTGTG+AGG | 0.630205 | 3_3:+62346314 | None:intergenic |
| TACAGGATTCACAACTGGAG+GGG | 0.630808 | 3_3:-62342896 | Msa0463080:CDS |
| AAGCTTATCAAAATCAGATG+GGG | 0.633795 | 3_3:+62341869 | None:intergenic |
| ATACAGGATTCACAACTGGA+GGG | 0.659687 | 3_3:-62342897 | Msa0463080:CDS |
| AGCTTATCAAAATCAGATGG+GGG | 0.668310 | 3_3:+62341870 | None:intergenic |
| CAGATGTTGAATACGACGAG+AGG | 0.671951 | 3_3:+62346443 | None:intergenic |
| ACAGTTTCAAGAAATCCCAC+TGG | 0.679401 | 3_3:-62342815 | Msa0463080:CDS |
| GGTTGACGCCATGTTCGCAG+AGG | 0.681472 | 3_3:+62346532 | None:intergenic |
| CAACCATACGAAGATCCAGT+GGG | 0.690374 | 3_3:+62342800 | None:intergenic |
| GGGACAACAACATATTATGG+TGG | 0.692260 | 3_3:+62343516 | None:intergenic |
| CCATGCCTTCTAAGTCAGAG+GGG | 0.694607 | 3_3:+62342101 | None:intergenic |
| TCAACCATACGAAGATCCAG+TGG | 0.717815 | 3_3:+62342799 | None:intergenic |
| AGTTTCTAGAAAATATGACA+AGG | 0.735731 | 3_3:+62341521 | None:intergenic |
| ATATGACAAGGAAACCTCCG+GGG | 0.760518 | 3_3:+62341533 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATTAAGCTTAATTT+AGG | - | chr3_3:62342845-62342864 | Msa0463080:CDS | 10.0% |
| !!! | GTATTGATAAAAAAAAAAAT+AGG | - | chr3_3:62342942-62342961 | Msa0463080:CDS | 10.0% |
| !! | TTTGTGAAAATATTAAATTA+AGG | - | chr3_3:62345707-62345726 | Msa0463080:intron | 10.0% |
| !! | AATCATTAAAAATCAATATT+TGG | + | chr3_3:62345738-62345757 | None:intergenic | 10.0% |
| !! | TATTTATAAATAAGATGTGA+AGG | - | chr3_3:62341795-62341814 | Msa0463080:intron | 15.0% |
| !!! | CATTTGTTTTATATACTAAT+GGG | + | chr3_3:62344687-62344706 | None:intergenic | 15.0% |
| !! | AAAATACAACAAAAAAACAA+AGG | + | chr3_3:62346464-62346483 | None:intergenic | 15.0% |
| !! | AATATGTAATAGTAGAAAAA+AGG | + | chr3_3:62346589-62346608 | None:intergenic | 15.0% |
| !! | ATCACATATTAAAATGTAGA+TGG | + | chr3_3:62341655-62341674 | None:intergenic | 20.0% |
| !!! | ATAATTGTGAACTTTTTGTT+TGG | - | chr3_3:62341749-62341768 | Msa0463080:intron | 20.0% |
| !!! | TAGTTGAAATTTTAACAGAA+TGG | + | chr3_3:62341931-62341950 | None:intergenic | 20.0% |
| !! | AAATAGATTTACTCATGTAA+TGG | - | chr3_3:62342400-62342419 | Msa0463080:intron | 20.0% |
| !!! | ATTGAATTTTTGTCTAGATA+AGG | - | chr3_3:62342675-62342694 | Msa0463080:intron | 20.0% |
| !!! | TTGAATTTTTGTCTAGATAA+GGG | - | chr3_3:62342676-62342695 | Msa0463080:intron | 20.0% |
| !! | GAAGGAAAAAAAATTATTAC+AGG | + | chr3_3:62342794-62342813 | None:intergenic | 20.0% |
| !! | AAAAAAAAAATAGGAGTGAA+TGG | - | chr3_3:62342951-62342970 | Msa0463080:CDS | 20.0% |
| !! | TATAAGAGAAACTATTAAGA+AGG | - | chr3_3:62343234-62343253 | Msa0463080:intron | 20.0% |
| !! | AAAGTAAATACTTATCTCAT+CGG | - | chr3_3:62342555-62342574 | Msa0463080:intron | 20.0% |
| !! | ATAAGATGAACAAAAATTTG+AGG | + | chr3_3:62343884-62343903 | None:intergenic | 20.0% |
| !!! | ATTGAATTTTTGTCTAGATA+AGG | - | chr3_3:62342675-62342694 | Msa0463080:intron | 20.0% |
| !!! | TTGAATTTTTGTCTAGATAA+GGG | - | chr3_3:62342676-62342695 | Msa0463080:intron | 20.0% |
| !! | GTTTATTGATATCTAATTAG+AGG | - | chr3_3:62344051-62344070 | Msa0463080:intron | 20.0% |
| !!! | TTTAGCTGTAACTTTTTTTA+TGG | - | chr3_3:62344656-62344675 | Msa0463080:intron | 20.0% |
| !!! | TTAGCTGTAACTTTTTTTAT+GGG | - | chr3_3:62344657-62344676 | Msa0463080:intron | 20.0% |
| !!! | CCATTTGTTTTATATACTAA+TGG | + | chr3_3:62344688-62344707 | None:intergenic | 20.0% |
| !! | CCATTAGTATATAAAACAAA+TGG | - | chr3_3:62344685-62344704 | Msa0463080:intron | 20.0% |
| !! | TGGTTAATATTAATACGAAA+TGG | - | chr3_3:62344769-62344788 | Msa0463080:intron | 20.0% |
| !! | AATAATCAAAGTTTACACAA+GGG | + | chr3_3:62344911-62344930 | None:intergenic | 20.0% |
| !! | AAATAATCAAAGTTTACACA+AGG | + | chr3_3:62344912-62344931 | None:intergenic | 20.0% |
| !! | TAAACTTTGATTATTTATGC+AGG | - | chr3_3:62344916-62344935 | Msa0463080:intron | 20.0% |
| !!! | AAAAGCTAAGACTTTAAAAT+AGG | + | chr3_3:62345316-62345335 | None:intergenic | 20.0% |
| !!! | CTTAGCTTTTAATTATGTAA+TGG | - | chr3_3:62345326-62345345 | Msa0463080:intron | 20.0% |
| ! | ACATATTAAAATGTAGATGG+AGG | + | chr3_3:62341652-62341671 | None:intergenic | 25.0% |
| ! | ATACAACAATATCCTTACTT+TGG | + | chr3_3:62341778-62341797 | None:intergenic | 25.0% |
| !! | TTTTCTCTTATAGCTTATCT+AGG | + | chr3_3:62342110-62342129 | None:intergenic | 25.0% |
| ! | AAGAGAAAATATGAATGAGT+TGG | - | chr3_3:62342121-62342140 | Msa0463080:CDS | 25.0% |
| !! | TTGAAACTCAGAAGAAATTT+TGG | + | chr3_3:62342537-62342556 | None:intergenic | 25.0% |
| ! | AACAAAAACTTGAGGAATTT+AGG | + | chr3_3:62342649-62342668 | None:intergenic | 25.0% |
| ! | ATAAGATGAACAAAAACTTG+AGG | + | chr3_3:62342657-62342676 | None:intergenic | 25.0% |
| !! | AGAGTTGAAATTTTCACAAA+TGG | + | chr3_3:62343054-62343073 | None:intergenic | 25.0% |
| ! | GGATCTAGATATTAATGAAT+TGG | - | chr3_3:62343255-62343274 | Msa0463080:intron | 25.0% |
| !! | TGGTTTTTGACATATTACTA+TGG | - | chr3_3:62343287-62343306 | Msa0463080:intron | 25.0% |
| !! | TTTTACTCGACAAACATTTA+TGG | - | chr3_3:62343405-62343424 | Msa0463080:intron | 25.0% |
| !! | AAATAGATTTGCTCATGTAA+TGG | - | chr3_3:62343566-62343585 | Msa0463080:intron | 25.0% |
| !! | TTCAAACTCAGAACAAATTT+TGG | + | chr3_3:62343701-62343720 | None:intergenic | 25.0% |
| !! | CTTTCAAACTCAAGAAATTT+TGG | + | chr3_3:62343766-62343785 | None:intergenic | 25.0% |
| ! | AACAAAAATTTGAGGAACTT+AGG | + | chr3_3:62343876-62343895 | None:intergenic | 25.0% |
| ! | ATTAGATATCAATAAACGAC+AGG | + | chr3_3:62344048-62344067 | None:intergenic | 25.0% |
| !!! | CTAATTAGAGGTACTTTTTT+AGG | - | chr3_3:62344063-62344082 | Msa0463080:intron | 25.0% |
| !!! | AGTTTTGACTTTGATTGATA+AGG | - | chr3_3:62344186-62344205 | Msa0463080:intron | 25.0% |
| ! | TAATACGAAATGGTTTCTTT+AGG | - | chr3_3:62344779-62344798 | Msa0463080:intron | 25.0% |
| ! | AATACGAAATGGTTTCTTTA+GGG | - | chr3_3:62344780-62344799 | Msa0463080:intron | 25.0% |
| !!! | AATTGGATGTAAGTATTGAT+TGG | - | chr3_3:62345160-62345179 | Msa0463080:intron | 25.0% |
| !! | GACAAATAAAGCTTTATAGA+GGG | + | chr3_3:62345236-62345255 | None:intergenic | 25.0% |
| !! | TGACAAATAAAGCTTTATAG+AGG | + | chr3_3:62345237-62345256 | None:intergenic | 25.0% |
| ! | AACATTTACAGTTCTTTGTT+GGG | - | chr3_3:62345372-62345391 | Msa0463080:intron | 25.0% |
| ! | AAACAAGTCTATATACAGTA+TGG | + | chr3_3:62345546-62345565 | None:intergenic | 25.0% |
| !! | ATTGATTAATTTTTCATCGC+AGG | - | chr3_3:62345963-62345982 | Msa0463080:intron | 25.0% |
| ! | AAATTTATATCAGATGCAGT+AGG | - | chr3_3:62346018-62346037 | Msa0463080:intron | 25.0% |
| !! | AGTTTCTAGAAAATATGACA+AGG | + | chr3_3:62346409-62346428 | None:intergenic | 25.0% |
| ! | TTTCTTCTATATCTCGTATA+AGG | - | chr3_3:62346507-62346526 | Msa0463080:CDS | 25.0% |
| ACAAGATTAGAGAGTAAGTT+GGG | - | chr3_3:62341972-62341991 | Msa0463080:intron | 30.0% | |
| ! | AAACTAGACTTAGGTTGTTT+GGG | - | chr3_3:62342023-62342042 | Msa0463080:intron | 30.0% |
| ACGATATTAGACCAAATAGA+AGG | - | chr3_3:62342079-62342098 | Msa0463080:CDS | 30.0% | |
| CGATATTAGACCAAATAGAA+GGG | - | chr3_3:62342080-62342099 | Msa0463080:CDS | 30.0% | |
| ATCTGAACAAACACTTGTAA+AGG | - | chr3_3:62342376-62342395 | Msa0463080:intron | 30.0% | |
| !! | GATTATCACTGATTCAAAGA+AGG | + | chr3_3:62342812-62342831 | None:intergenic | 30.0% |
| ATCATTGTGAACTCTATGTT+TGG | - | chr3_3:62342897-62342916 | Msa0463080:CDS | 30.0% | |
| ATACAACAATGTCATTACTC+TGG | + | chr3_3:62342926-62342945 | None:intergenic | 30.0% | |
| AAAAAATAGGAGTGAATGGA+TGG | - | chr3_3:62342955-62342974 | Msa0463080:CDS | 30.0% | |
| ! | CAACCATCTTTTCTTACTAT+AGG | + | chr3_3:62343119-62343138 | None:intergenic | 30.0% |
| !! | AAACTAGACTTAGGTTGTTT+TGG | - | chr3_3:62342023-62342042 | Msa0463080:intron | 30.0% |
| GTTTCTCTTATAGCTTATCT+AGG | + | chr3_3:62343226-62343245 | None:intergenic | 30.0% | |
| TAATGAATTGGTGAAAGACA+TGG | - | chr3_3:62343267-62343286 | Msa0463080:intron | 30.0% | |
| !!! | TTTTAGCTTCAAAAGTGAGA+AGG | + | chr3_3:62343439-62343458 | None:intergenic | 30.0% |
| !!! | AGGAAGTTTTTTTCTCTTTG+CGG | - | chr3_3:62344083-62344102 | Msa0463080:intron | 30.0% |
| ! | TTTGACTTTGATTGATAAGG+TGG | - | chr3_3:62344189-62344208 | Msa0463080:intron | 30.0% |
| GTGTAAAAGTTATACGCTTA+AGG | - | chr3_3:62344232-62344251 | Msa0463080:intron | 30.0% | |
| !!! | CTTTTGATTCACTTTTTGGT+GGG | + | chr3_3:62344434-62344453 | None:intergenic | 30.0% |
| !! | CTTCCTTTTGATTCACTTTT+TGG | + | chr3_3:62344438-62344457 | None:intergenic | 30.0% |
| AATCAAAAGGAAGTCATAGT+TGG | - | chr3_3:62344445-62344464 | Msa0463080:intron | 30.0% | |
| AGTGATAACATTGACAACTA+TGG | + | chr3_3:62344497-62344516 | None:intergenic | 30.0% | |
| AAAATGTTCACTCTGATATC+TGG | - | chr3_3:62344587-62344606 | Msa0463080:intron | 30.0% | |
| ! | ATTTCTTTAGAGATCATCAC+TGG | - | chr3_3:62344749-62344768 | Msa0463080:intron | 30.0% |
| TATTTATGCAGGTATTCAAC+TGG | - | chr3_3:62344927-62344946 | Msa0463080:intron | 30.0% | |
| GTATCAACAGTCAAATGAAT+GGG | + | chr3_3:62345014-62345033 | None:intergenic | 30.0% | |
| TGTATCAACAGTCAAATGAA+TGG | + | chr3_3:62345015-62345034 | None:intergenic | 30.0% | |
| ATTCATTTGACTGTTGATAC+AGG | - | chr3_3:62345014-62345033 | Msa0463080:intron | 30.0% | |
| GTGTCAAACAATTTATCTCT+TGG | - | chr3_3:62345071-62345090 | Msa0463080:intron | 30.0% | |
| AAGGAAAAAAGAAAGAAAGC+GGG | + | chr3_3:62345202-62345221 | None:intergenic | 30.0% | |
| GAAGGAAAAAAGAAAGAAAG+CGG | + | chr3_3:62345203-62345222 | None:intergenic | 30.0% | |
| AAAGAACTGTAAATGTTCAC+GGG | + | chr3_3:62345369-62345388 | None:intergenic | 30.0% | |
| CAAAGAACTGTAAATGTTCA+CGG | + | chr3_3:62345370-62345389 | None:intergenic | 30.0% | |
| GAACATTTACAGTTCTTTGT+TGG | - | chr3_3:62345371-62345390 | Msa0463080:intron | 30.0% | |
| ACATTTACAGTTCTTTGTTG+GGG | - | chr3_3:62345373-62345392 | Msa0463080:intron | 30.0% | |
| ATATACAGTATGGTGAAACT+TGG | + | chr3_3:62345536-62345555 | None:intergenic | 30.0% | |
| CATCACTTTATTGTTTCCAT+TGG | - | chr3_3:62345585-62345604 | Msa0463080:intron | 30.0% | |
| ! | AATGTCAGTTGATATCCTAA+AGG | - | chr3_3:62345784-62345803 | Msa0463080:intron | 30.0% |
| !! | CAAATATGTTGATGATGTTG+TGG | - | chr3_3:62345892-62345911 | Msa0463080:intron | 30.0% |
| TTACTACTCACTTTATTGTC+TGG | - | chr3_3:62345934-62345953 | Msa0463080:intron | 30.0% | |
| TACTACTCACTTTATTGTCT+GGG | - | chr3_3:62345935-62345954 | Msa0463080:intron | 30.0% | |
| ! | ATTAATTTTTCATCGCAGGA+AGG | - | chr3_3:62345967-62345986 | Msa0463080:intron | 30.0% |
| ! | TTAATTTTTCATCGCAGGAA+GGG | - | chr3_3:62345968-62345987 | Msa0463080:intron | 30.0% |
| !! | AATTTCCCAATTTTGTTGTC+TGG | + | chr3_3:62346003-62346022 | None:intergenic | 30.0% |
| AAGCTTATCAAAATCAGATG+GGG | + | chr3_3:62346061-62346080 | None:intergenic | 30.0% | |
| CAAGCTTATCAAAATCAGAT+GGG | + | chr3_3:62346062-62346081 | None:intergenic | 30.0% | |
| ACAAGCTTATCAAAATCAGA+TGG | + | chr3_3:62346063-62346082 | None:intergenic | 30.0% | |
| !! | TCATCTATCATAGCTTTGTT+TGG | - | chr3_3:62346225-62346244 | Msa0463080:intron | 30.0% |
| CAGTCAGAATTACAAAATCT+GGG | + | chr3_3:62346352-62346371 | None:intergenic | 30.0% | |
| ACAGTCAGAATTACAAAATC+TGG | + | chr3_3:62346353-62346372 | None:intergenic | 30.0% | |
| !! | TTTTTGTTGTATTTTGCGCA+TGG | - | chr3_3:62346469-62346488 | Msa0463080:CDS | 30.0% |
| TATAGAAGAAAACCACCTAT+GGG | + | chr3_3:62346498-62346517 | None:intergenic | 30.0% | |
| ATATAGAAGAAAACCACCTA+TGG | + | chr3_3:62346499-62346518 | None:intergenic | 30.0% | |
| GAGGAACAGCATATGAATTA+CGG | + | chr3_3:62341597-62341616 | None:intergenic | 35.0% | |
| TTTGTTTGGAAGCCAAAGTA+AGG | - | chr3_3:62341763-62341782 | Msa0463080:intron | 35.0% | |
| TCGTTTCAGTTTCATGAAAC+TGG | - | chr3_3:62341845-62341864 | Msa0463080:intron | 35.0% | |
| CTCGAACTAATCAGATAGAA+GGG | - | chr3_3:62341893-62341912 | Msa0463080:CDS | 35.0% | |
| ACTAATCAGATAGAAGGGAT+TGG | - | chr3_3:62341898-62341917 | Msa0463080:CDS | 35.0% | |
| GACAAGATTAGAGAGTAAGT+TGG | - | chr3_3:62341971-62341990 | Msa0463080:intron | 35.0% | |
| ! | CTACCATCTTTTCTACTGAT+AGG | + | chr3_3:62342003-62342022 | None:intergenic | 35.0% |
| AGATGGTAGAAACTAGACTT+AGG | - | chr3_3:62342014-62342033 | Msa0463080:intron | 35.0% | |
| ! | GAAACTAGACTTAGGTTGTT+TGG | - | chr3_3:62342022-62342041 | Msa0463080:intron | 35.0% |
| ! | TGGTTTTTGACATAACACCA+TGG | - | chr3_3:62342153-62342172 | Msa0463080:intron | 35.0% |
| TCAGATGTTCATGCTCTTAA+TGG | + | chr3_3:62342362-62342381 | None:intergenic | 35.0% | |
| CTAATTCCCACATTAAGTGT+GGG | + | chr3_3:62342451-62342470 | None:intergenic | 35.0% | |
| TGACAACATTAGAAGAGAGT+TGG | - | chr3_3:62343086-62343105 | Msa0463080:intron | 35.0% | |
| GACAACATTAGAAGAGAGTT+GGG | - | chr3_3:62343087-62343106 | Msa0463080:intron | 35.0% | |
| ACAACATTAGAAGAGAGTTG+GGG | - | chr3_3:62343088-62343107 | Msa0463080:intron | 35.0% | |
| GCACCTATAGTAAGAAAAGA+TGG | - | chr3_3:62343113-62343132 | Msa0463080:intron | 35.0% | |
| AGATGGTTGAAACTAGACTT+AGG | - | chr3_3:62343130-62343149 | Msa0463080:intron | 35.0% | |
| GCATCATTTGATTCATGTAG+TGG | - | chr3_3:62343309-62343328 | Msa0463080:intron | 35.0% | |
| !!! | TTTTAGCTTCGAAAGCAAGA+AGG | + | chr3_3:62343477-62343496 | None:intergenic | 35.0% |
| TTGCTTTCGAAGCTAAAACA+TGG | - | chr3_3:62343479-62343498 | Msa0463080:CDS | 35.0% | |
| TCAGATGTTCATGCTCTTAA+TGG | + | chr3_3:62342362-62342381 | None:intergenic | 35.0% | |
| CTAATTCCGACATTAAGTGT+GGG | + | chr3_3:62343617-62343636 | None:intergenic | 35.0% | |
| CTATAATTTCCCAGATCTAG+CGG | - | chr3_3:62343816-62343835 | Msa0463080:intron | 35.0% | |
| TCTGATTCATCTCATACAAG+AGG | + | chr3_3:62343961-62343980 | None:intergenic | 35.0% | |
| ! | AATTGTTCTGACCTTTTTCC+AGG | - | chr3_3:62344369-62344388 | Msa0463080:intron | 35.0% |
| !!! | CCTTTTGATTCACTTTTTGG+TGG | + | chr3_3:62344435-62344454 | None:intergenic | 35.0% |
| CCACCAAAAAGTGAATCAAA+AGG | - | chr3_3:62344432-62344451 | Msa0463080:intron | 35.0% | |
| AAAAGGAAGTCATAGTTGGA+TGG | - | chr3_3:62344449-62344468 | Msa0463080:intron | 35.0% | |
| !! | CTTTGAAATCCATATGACGT+AGG | - | chr3_3:62344561-62344580 | Msa0463080:intron | 35.0% |
| ! | CATTTTGAACCTACGTCATA+TGG | + | chr3_3:62344573-62344592 | None:intergenic | 35.0% |
| ! | GTTTCTTTAGAGATCATCAC+TGG | - | chr3_3:62344707-62344726 | Msa0463080:intron | 35.0% |
| CAAATACACCACTAAAGAAG+AGG | + | chr3_3:62344865-62344884 | None:intergenic | 35.0% | |
| CTCTTCTTTAGTGGTGTATT+TGG | - | chr3_3:62344863-62344882 | Msa0463080:intron | 35.0% | |
| CTTCTCGAGAATAAAACTCA+TGG | + | chr3_3:62344983-62345002 | None:intergenic | 35.0% | |
| ACAGTCAAATGAATGGGATT+GGG | + | chr3_3:62345008-62345027 | None:intergenic | 35.0% | |
| AACAGTCAAATGAATGGGAT+TGG | + | chr3_3:62345009-62345028 | None:intergenic | 35.0% | |
| ! | GTTTGACACATAAGCTTTGA+TGG | + | chr3_3:62345060-62345079 | None:intergenic | 35.0% |
| ACAATTTATCTCTTGGAGAC+AGG | - | chr3_3:62345078-62345097 | Msa0463080:intron | 35.0% | |
| ATAGAGGGAGAAGAATAAGA+AGG | + | chr3_3:62345221-62345240 | None:intergenic | 35.0% | |
| CAAGCTTCGGCAAATATATA+AGG | + | chr3_3:62345273-62345292 | None:intergenic | 35.0% | |
| ! | AATGTTCACGGGTTGTATAA+AGG | + | chr3_3:62345358-62345377 | None:intergenic | 35.0% |
| CATTTACAGTTCTTTGTTGG+GGG | - | chr3_3:62345374-62345393 | Msa0463080:intron | 35.0% | |
| GAGAAAATCAATCCAGTAGT+AGG | - | chr3_3:62345418-62345437 | Msa0463080:intron | 35.0% | |
| ! | CAATTAGAGGCTTTGTCATT+TGG | + | chr3_3:62345511-62345530 | None:intergenic | 35.0% |
| GATTGACACAACATTACCAA+TGG | + | chr3_3:62345604-62345623 | None:intergenic | 35.0% | |
| TGAAAAGAACTCCAATTGCT+TGG | + | chr3_3:62345652-62345671 | None:intergenic | 35.0% | |
| TTGCACCAGACAACAAAATT+GGG | - | chr3_3:62345995-62346014 | Msa0463080:intron | 35.0% | |
| AGCTTATCAAAATCAGATGG+GGG | + | chr3_3:62346060-62346079 | None:intergenic | 35.0% | |
| ! | TGTTACTGTGTTTTACGAAG+TGG | - | chr3_3:62346115-62346134 | Msa0463080:intron | 35.0% |
| ! | GTTACTGTGTTTTACGAAGT+GGG | - | chr3_3:62346116-62346135 | Msa0463080:intron | 35.0% |
| CTTGGCAGAAAAATTGAACA+CGG | - | chr3_3:62346323-62346342 | Msa0463080:CDS | 35.0% | |
| AAATATGACAAGGAAACCTC+CGG | + | chr3_3:62346399-62346418 | None:intergenic | 35.0% | |
| ! | TGATCAACGGATTCATTGTG+AGG | + | chr3_3:62341616-62341635 | None:intergenic | 40.0% |
| TCACAATGAATCCGTTGATC+AGG | - | chr3_3:62341615-62341634 | Msa0463080:CDS | 40.0% | |
| TAAAATGTAGATGGAGGCGA+GGG | + | chr3_3:62341646-62341665 | None:intergenic | 40.0% | |
| TTAAAATGTAGATGGAGGCG+AGG | + | chr3_3:62341647-62341666 | None:intergenic | 40.0% | |
| GCTCGAACTAATCAGATAGA+AGG | - | chr3_3:62341892-62341911 | Msa0463080:CDS | 40.0% | |
| GCACCTATCAGTAGAAAAGA+TGG | - | chr3_3:62341997-62342016 | Msa0463080:intron | 40.0% | |
| TCTAGGTCTTCCCTTCTATT+TGG | + | chr3_3:62342093-62342112 | None:intergenic | 40.0% | |
| !! | GAATGAGTTGGTGAAAGACA+TGG | - | chr3_3:62342133-62342152 | Msa0463080:CDS | 40.0% |
| ACATGAATCAAATGACGCCA+TGG | + | chr3_3:62342173-62342192 | None:intergenic | 40.0% | |
| GCGTCATTTGATTCATGTAG+CGG | - | chr3_3:62342175-62342194 | Msa0463080:intron | 40.0% | |
| TTTCAGCTTCAAAAGCGAGA+AGG | + | chr3_3:62342313-62342332 | None:intergenic | 40.0% | |
| !!! | CTTTTGAAGCTGAAACATGC+AGG | - | chr3_3:62342318-62342337 | Msa0463080:intron | 40.0% |
| GCTAATTCCCACATTAAGTG+TGG | + | chr3_3:62342452-62342471 | None:intergenic | 40.0% | |
| CGCTTCATCTGGGAAATTAT+AGG | + | chr3_3:62342591-62342610 | None:intergenic | 40.0% | |
| !! | CACTTTCTGGCTTGATCATT+GGG | - | chr3_3:62342616-62342635 | Msa0463080:intron | 40.0% |
| ! | TTTTTGTCTAGATAAGGGCG+AGG | - | chr3_3:62342681-62342700 | Msa0463080:intron | 40.0% |
| TCTGATTCCTCTCATACAAG+AGG | + | chr3_3:62342734-62342753 | None:intergenic | 40.0% | |
| TTCATTCCAGTTTCATGAGC+TGG | + | chr3_3:62343005-62343024 | None:intergenic | 40.0% | |
| TGTATCGAGAGTAGATCAGA+AGG | - | chr3_3:62343191-62343210 | Msa0463080:intron | 40.0% | |
| !! | AAGCCTTATTCCACTAAGTG+GGG | + | chr3_3:62343336-62343355 | None:intergenic | 40.0% |
| !! | CAAGCCTTATTCCACTAAGT+GGG | + | chr3_3:62343337-62343356 | None:intergenic | 40.0% |
| GCTAATTCCGACATTAAGTG+TGG | + | chr3_3:62343618-62343637 | None:intergenic | 40.0% | |
| CGCTAGATCTGGGAAATTAT+AGG | + | chr3_3:62343818-62343837 | None:intergenic | 40.0% | |
| ! | TTTTTGTCTAGATAAGGGCG+AGG | - | chr3_3:62342681-62342700 | Msa0463080:intron | 40.0% |
| GGGACAACAACATATTATGG+TGG | + | chr3_3:62344414-62344433 | None:intergenic | 40.0% | |
| GGTGGGACAACAACATATTA+TGG | + | chr3_3:62344417-62344436 | None:intergenic | 40.0% | |
| ! | TGATATCTGGAAGTGTGGAA+TGG | - | chr3_3:62344600-62344619 | Msa0463080:intron | 40.0% |
| ! | GTTTCTTTAGGGATCATCAC+TGG | - | chr3_3:62344791-62344810 | Msa0463080:intron | 40.0% |
| CTAAGTTGCCTCTTCTTTAG+TGG | - | chr3_3:62344854-62344873 | Msa0463080:intron | 40.0% | |
| ! | AGTGGTGTATTTGGTGATCT+TGG | - | chr3_3:62344872-62344891 | Msa0463080:intron | 40.0% |
| ! | GTGGTGTATTTGGTGATCTT+GGG | - | chr3_3:62344873-62344892 | Msa0463080:intron | 40.0% |
| GTTGATACAGGATTCACAAC+TGG | - | chr3_3:62345026-62345045 | Msa0463080:intron | 40.0% | |
| ATACAGGATTCACAACTGGA+GGG | - | chr3_3:62345030-62345049 | Msa0463080:intron | 40.0% | |
| ACAGTTTCAAGAAATCCCAC+TGG | - | chr3_3:62345112-62345131 | Msa0463080:intron | 40.0% | |
| ACACTTACACTACCTACTAC+TGG | + | chr3_3:62345433-62345452 | None:intergenic | 40.0% | |
| GTGAAACTTGGCTCAATTAG+AGG | + | chr3_3:62345524-62345543 | None:intergenic | 40.0% | |
| TCACTTCTGAACCAAGCAAT+TGG | - | chr3_3:62345638-62345657 | Msa0463080:intron | 40.0% | |
| AAAATCCCCTCTGACTTAGA+AGG | - | chr3_3:62345821-62345840 | Msa0463080:intron | 40.0% | |
| GTTGCACCAGACAACAAAAT+TGG | - | chr3_3:62345994-62346013 | Msa0463080:intron | 40.0% | |
| AAATCAGATGGGGGCAATTT+AGG | + | chr3_3:62346051-62346070 | None:intergenic | 40.0% | |
| CACAAGAACTCAACTTAGCT+TGG | - | chr3_3:62346305-62346324 | Msa0463080:intron | 40.0% | |
| AATATGACAAGGAAACCTCC+GGG | + | chr3_3:62346398-62346417 | None:intergenic | 40.0% | |
| GAATTGCAACACTGTGCGAT+TGG | + | chr3_3:62341419-62341438 | None:intergenic | 45.0% | |
| TTCTCAGAGCTTATCCGCTA+AGG | - | chr3_3:62341456-62341475 | Msa0463080:three_prime_UTR | 45.0% | |
| CAGATGTTGAATACGACGAG+AGG | + | chr3_3:62341487-62341506 | None:intergenic | 45.0% | |
| CTTGGATCTGTTCTTCCTGA+TGG | - | chr3_3:62341559-62341578 | Msa0463080:three_prime_UTR | 45.0% | |
| CGGATATCAACAGTTCCATC+AGG | + | chr3_3:62341577-62341596 | None:intergenic | 45.0% | |
| GCATGTAGAAAGAAGACGTC+TGG | - | chr3_3:62342045-62342064 | Msa0463080:CDS | 45.0% | |
| !! | AAGCCTTATTCCACCAAGTG+GGG | + | chr3_3:62342202-62342221 | None:intergenic | 45.0% |
| !! | CAAGCCTTATTCCACCAAGT+GGG | + | chr3_3:62342203-62342222 | None:intergenic | 45.0% |
| TTAGCTGCCCACACTTAATG+TGG | - | chr3_3:62342441-62342460 | Msa0463080:intron | 45.0% | |
| TAGCTGCCCACACTTAATGT+GGG | - | chr3_3:62342442-62342461 | Msa0463080:intron | 45.0% | |
| ! | AAGTGGTTGTCGCTTCATCT+GGG | + | chr3_3:62342601-62342620 | None:intergenic | 45.0% |
| ! | AAAGTGGTTGTCGCTTCATC+TGG | + | chr3_3:62342602-62342621 | None:intergenic | 45.0% |
| ATGAAGCGACAACCACTTTC+TGG | - | chr3_3:62342603-62342622 | Msa0463080:intron | 45.0% | |
| CCAATGATCAAGCCAGAAAG+TGG | + | chr3_3:62342618-62342637 | None:intergenic | 45.0% | |
| !! | CCACTTTCTGGCTTGATCAT+TGG | - | chr3_3:62342615-62342634 | Msa0463080:intron | 45.0% |
| TCTGACACCTCTTGTATGAG+AGG | - | chr3_3:62342724-62342743 | Msa0463080:intron | 45.0% | |
| TTCACTCCAGCTCATGAAAC+TGG | - | chr3_3:62342996-62343015 | Msa0463080:intron | 45.0% | |
| !! | CCAAGCCTTATTCCACTAAG+TGG | + | chr3_3:62343338-62343357 | None:intergenic | 45.0% |
| CCACTTAGTGGAATAAGGCT+TGG | - | chr3_3:62343335-62343354 | Msa0463080:intron | 45.0% | |
| TAGCTGCCCACACTTAATGT+CGG | - | chr3_3:62342442-62342461 | Msa0463080:intron | 45.0% | |
| AGGAACTTAGGAACAGAACC+CGG | + | chr3_3:62343864-62343883 | None:intergenic | 45.0% | |
| CACTCTGATATCTGGAAGTG+TGG | - | chr3_3:62344595-62344614 | Msa0463080:intron | 45.0% | |
| ! | TCTGGAAGTGTGGAATGGAA+TGG | - | chr3_3:62344605-62344624 | Msa0463080:intron | 45.0% |
| ! | GTGTATTTGGTGATCTTGGG+AGG | - | chr3_3:62344876-62344895 | Msa0463080:intron | 45.0% |
| TGCAGGTATTCAACTGGACT+TGG | - | chr3_3:62344933-62344952 | Msa0463080:intron | 45.0% | |
| TCAACTGGACTTGGAGTAAC+TGG | - | chr3_3:62344942-62344961 | Msa0463080:intron | 45.0% | |
| GATACAGGATTCACAACTGG+AGG | - | chr3_3:62345029-62345048 | Msa0463080:intron | 45.0% | |
| TACAGGATTCACAACTGGAG+GGG | - | chr3_3:62345031-62345050 | Msa0463080:intron | 45.0% | |
| AATCCCACTGGATCTTCGTA+TGG | - | chr3_3:62345124-62345143 | Msa0463080:intron | 45.0% | |
| CAACCATACGAAGATCCAGT+GGG | + | chr3_3:62345130-62345149 | None:intergenic | 45.0% | |
| TCAACCATACGAAGATCCAG+TGG | + | chr3_3:62345131-62345150 | None:intergenic | 45.0% | |
| ATGGTTGAAGCTGAGCGAAT+TGG | - | chr3_3:62345143-62345162 | Msa0463080:intron | 45.0% | |
| TGTCAACAGTGGTTGCCTTT+AGG | + | chr3_3:62345802-62345821 | None:intergenic | 45.0% | |
| ! | AGAGGGGATTTTGTCAACAG+TGG | + | chr3_3:62345813-62345832 | None:intergenic | 45.0% |
| TCCATGCCTTCTAAGTCAGA+GGG | + | chr3_3:62345830-62345849 | None:intergenic | 45.0% | |
| TTCCATGCCTTCTAAGTCAG+AGG | + | chr3_3:62345831-62345850 | None:intergenic | 45.0% | |
| !! | AGAAGGCATGGAAGCATCAA+TGG | - | chr3_3:62345838-62345857 | Msa0463080:intron | 45.0% |
| GTTTCAGGATCACTTGCTCA+TGG | - | chr3_3:62346266-62346285 | Msa0463080:intron | 45.0% | |
| ATATGACAAGGAAACCTCCG+GGG | + | chr3_3:62346397-62346416 | None:intergenic | 45.0% | |
| !! | TCATTAAAAAAAATTATTAT+AGG | + | chr3_3:62344021-62344040 | None:intergenic | 5.0% |
| !! | AGCGGATAAGCTCTGAGAAG+AGG | + | chr3_3:62341455-62341474 | None:intergenic | 50.0% |
| GACGAGAGGATGAACCTTAG+CGG | + | chr3_3:62341473-62341492 | None:intergenic | 50.0% | |
| ATGACGCGTTCAGCTTGATC+AGG | + | chr3_3:62341529-62341548 | None:intergenic | 50.0% | |
| GATCAAGCTGAACGCGTCAT+TGG | - | chr3_3:62341529-62341548 | Msa0463080:three_prime_UTR | 50.0% | |
| !! | CCAAGCCTTATTCCACCAAG+TGG | + | chr3_3:62342204-62342223 | None:intergenic | 50.0% |
| ! | CCACTTGGTGGAATAAGGCT+TGG | - | chr3_3:62342201-62342220 | Msa0463080:intron | 50.0% |
| CGAGAGTAGATCAGAAGGAG+AGG | - | chr3_3:62343196-62343215 | Msa0463080:intron | 50.0% | |
| !! | ATGTAGTGGACCCCACTTAG+TGG | - | chr3_3:62343323-62343342 | Msa0463080:intron | 50.0% |
| GGACCCCACTTAGTGGAATA+AGG | - | chr3_3:62343330-62343349 | Msa0463080:intron | 50.0% | |
| !! | CCACTTTCTGGCTTGATCAC+CGG | - | chr3_3:62343842-62343861 | Msa0463080:intron | 50.0% |
| !! | CACTTTCTGGCTTGATCACC+GGG | - | chr3_3:62343843-62343862 | Msa0463080:intron | 50.0% |
| ! | GACCTTTTTCCAGGTTGCGT+TGG | - | chr3_3:62344378-62344397 | Msa0463080:intron | 50.0% |
| GTCCAACGCAACCTGGAAAA+AGG | + | chr3_3:62344383-62344402 | None:intergenic | 50.0% | |
| ACTCTATGTCCAACGCAACC+TGG | + | chr3_3:62344390-62344409 | None:intergenic | 50.0% | |
| ACTGGACTTGGAGTAACTGG+TGG | - | chr3_3:62344945-62344964 | Msa0463080:intron | 50.0% | |
| ACAGGATTCACAACTGGAGG+GGG | - | chr3_3:62345032-62345051 | Msa0463080:intron | 50.0% | |
| GAGCTTCAGGACACAAGCTT+CGG | + | chr3_3:62345286-62345305 | None:intergenic | 50.0% | |
| AATAGGCAACCACGAGCTTC+AGG | + | chr3_3:62345299-62345318 | None:intergenic | 50.0% | |
| CCATGCCTTCTAAGTCAGAG+GGG | + | chr3_3:62345829-62345848 | None:intergenic | 50.0% | |
| GCTTGTGAACGACAGCTTAC+AGG | - | chr3_3:62346077-62346096 | Msa0463080:intron | 50.0% | |
| ACGCGTGCTTCATCTGTTTC+AGG | - | chr3_3:62346251-62346270 | Msa0463080:intron | 50.0% | |
| TTCTGACTGTCTCTGAGCGA+AGG | - | chr3_3:62346363-62346382 | Msa0463080:CDS | 50.0% | |
| ! | GAGCGAAGGCAATTTTTCCC+CGG | - | chr3_3:62346377-62346396 | Msa0463080:CDS | 50.0% |
| ! | TTTTGCGCATGGCAACCCAT+AGG | - | chr3_3:62346480-62346499 | Msa0463080:CDS | 50.0% |
| ACACGTCTTGTGAGCAGCGA+AGG | - | chr3_3:62341357-62341376 | Msa0463080:three_prime_UTR | 55.0% | |
| TCCAACCTCCTCTGCGAACA+TGG | - | chr3_3:62341387-62341406 | Msa0463080:three_prime_UTR | 55.0% | |
| CGCGTCATTGGAACGCTTCT+TGG | - | chr3_3:62341541-62341560 | Msa0463080:three_prime_UTR | 55.0% | |
| CGAGGGAAGGACCTGATCAA+CGG | + | chr3_3:62341629-62341648 | None:intergenic | 55.0% | |
| ATGTAGATGGAGGCGAGGGA+AGG | + | chr3_3:62341642-62341661 | None:intergenic | 55.0% | |
| !! | TTCATGTAGCGGACCCCACT+TGG | - | chr3_3:62342186-62342205 | Msa0463080:intron | 55.0% |
| ! | GGACCCCACTTGGTGGAATA+AGG | - | chr3_3:62342196-62342215 | Msa0463080:intron | 55.0% |
| AAGTGGCTGCCGCTAGATCT+GGG | + | chr3_3:62343828-62343847 | None:intergenic | 55.0% | |
| AAAGTGGCTGCCGCTAGATC+TGG | + | chr3_3:62343829-62343848 | None:intergenic | 55.0% | |
| ! | ATCTAGCGGCAGCCACTTTC+TGG | - | chr3_3:62343830-62343849 | Msa0463080:intron | 55.0% |
| CCGGTGATCAAGCCAGAAAG+TGG | + | chr3_3:62343845-62343864 | None:intergenic | 55.0% | |
| AGCTTGTGTCCTGAAGCTCG+TGG | - | chr3_3:62345287-62345306 | Msa0463080:intron | 55.0% | |
| CCCCTCTGACTTAGAAGGCA+TGG | - | chr3_3:62345826-62345845 | Msa0463080:intron | 55.0% | |
| ! | CGAAGGCAATTTTTCCCCGG+AGG | - | chr3_3:62346380-62346399 | Msa0463080:CDS | 55.0% |
| GCCATGTTCGCAGAGGAGGT+TGG | + | chr3_3:62341391-62341410 | None:intergenic | 60.0% | |
| TGACGCCATGTTCGCAGAGG+AGG | + | chr3_3:62341395-62341414 | None:intergenic | 60.0% | |
| GGTTGACGCCATGTTCGCAG+AGG | + | chr3_3:62341398-62341417 | None:intergenic | 60.0% | |
| !! | ATGTAGCGGACCCCACTTGG+TGG | - | chr3_3:62342189-62342208 | Msa0463080:intron | 60.0% |
| TGCGCATGGCAACCCATAGG+TGG | - | chr3_3:62346483-62346502 | Msa0463080:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 62341322 | 62346627 | 62341322 | ID=Msa0463080;Name=Msa0463080 |
| chr3_3 | mRNA | 62341322 | 62346627 | 62341322 | ID=Msa0463080-mRNA-1;Parent=Msa0463080;Name=Msa0463080-mRNA-1;_AED=0.07;_eAED=0.07;_QI=84|1|1|1|1|1|6|265|288 |
| chr3_3 | exon | 62341322 | 62341676 | 62341322 | ID=Msa0463080-mRNA-1:exon:13330;Parent=Msa0463080-mRNA-1 |
| chr3_3 | exon | 62341851 | 62341964 | 62341851 | ID=Msa0463080-mRNA-1:exon:13329;Parent=Msa0463080-mRNA-1 |
| chr3_3 | exon | 62342036 | 62342157 | 62342036 | ID=Msa0463080-mRNA-1:exon:13328;Parent=Msa0463080-mRNA-1 |
| chr3_3 | exon | 62342782 | 62343011 | 62342782 | ID=Msa0463080-mRNA-1:exon:13327;Parent=Msa0463080-mRNA-1 |
| chr3_3 | exon | 62343479 | 62343558 | 62343479 | ID=Msa0463080-mRNA-1:exon:13326;Parent=Msa0463080-mRNA-1 |
| chr3_3 | exon | 62346313 | 62346627 | 62346313 | ID=Msa0463080-mRNA-1:exon:13325;Parent=Msa0463080-mRNA-1 |
| chr3_3 | five_prime_UTR | 62346544 | 62346627 | 62346544 | ID=Msa0463080-mRNA-1:five_prime_utr;Parent=Msa0463080-mRNA-1 |
| chr3_3 | CDS | 62346313 | 62346543 | 62346313 | ID=Msa0463080-mRNA-1:cds;Parent=Msa0463080-mRNA-1 |
| chr3_3 | CDS | 62343479 | 62343558 | 62343479 | ID=Msa0463080-mRNA-1:cds;Parent=Msa0463080-mRNA-1 |
| chr3_3 | CDS | 62342782 | 62343011 | 62342782 | ID=Msa0463080-mRNA-1:cds;Parent=Msa0463080-mRNA-1 |
| chr3_3 | CDS | 62342036 | 62342157 | 62342036 | ID=Msa0463080-mRNA-1:cds;Parent=Msa0463080-mRNA-1 |
| chr3_3 | CDS | 62341851 | 62341964 | 62341851 | ID=Msa0463080-mRNA-1:cds;Parent=Msa0463080-mRNA-1 |
| chr3_3 | CDS | 62341587 | 62341676 | 62341587 | ID=Msa0463080-mRNA-1:cds;Parent=Msa0463080-mRNA-1 |
| chr3_3 | three_prime_UTR | 62341322 | 62341586 | 62341322 | ID=Msa0463080-mRNA-1:three_prime_utr;Parent=Msa0463080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
