Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508760 | XP_003600874.1 | 98.701 | 154 | 0 | 1 | 1 | 154 | 1 | 152 | 4.96e-108 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508760 | sp|P59234|YIPL_SOLTU | 75.194 | 129 | 32 | 0 | 26 | 154 | 1 | 129 | 8.37e-70 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508760 | G7JB73 | 98.701 | 154 | 0 | 1 | 1 | 154 | 1 | 152 | 2.37e-108 | 314 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0508760 | Msa0802790 | 0.842364 | 2.705891e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508760 | MtrunA17_Chr3g0113291 | 98.701 | 154 | 0 | 1 | 1 | 154 | 1 | 152 | 4.56e-112 | 314 |
| Msa0508760 | MtrunA17_Chr5g0436971 | 76.562 | 128 | 30 | 0 | 26 | 153 | 1 | 128 | 9.56e-72 | 211 |
| Msa0508760 | MtrunA17_Chr7g0242231 | 73.451 | 113 | 30 | 0 | 26 | 138 | 1 | 113 | 9.33e-60 | 181 |
| Msa0508760 | MtrunA17_Chr2g0316921 | 57.031 | 128 | 55 | 0 | 26 | 153 | 1 | 128 | 1.90e-50 | 157 |
| Msa0508760 | MtrunA17_Chr8g0360291 | 52.344 | 128 | 61 | 0 | 26 | 153 | 1 | 128 | 3.42e-45 | 144 |
| Msa0508760 | MtrunA17_Chr4g0046851 | 51.562 | 128 | 60 | 1 | 26 | 153 | 1 | 126 | 1.01e-44 | 143 |
| Msa0508760 | MtrunA17_Chr8g0346501 | 52.128 | 94 | 45 | 0 | 37 | 130 | 8 | 101 | 2.47e-33 | 113 |
| Msa0508760 | MtrunA17_Chr3g0127211 | 51.064 | 94 | 46 | 0 | 37 | 130 | 8 | 101 | 4.21e-33 | 113 |
| Msa0508760 | MtrunA17_Chr1g0188931 | 46.465 | 99 | 52 | 1 | 33 | 130 | 3 | 101 | 1.53e-31 | 108 |
| Msa0508760 | MtrunA17_Chr2g0316891 | 52.941 | 85 | 40 | 0 | 69 | 153 | 42 | 126 | 1.40e-24 | 92.0 |
| Msa0508760 | MtrunA17_Chr1g0188951 | 51.852 | 54 | 26 | 0 | 73 | 126 | 1 | 54 | 7.11e-16 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508760 | AT2G40110.1 | 80.620 | 129 | 24 | 1 | 26 | 153 | 1 | 129 | 3.55e-77 | 225 |
| Msa0508760 | AT3G11230.1 | 69.531 | 128 | 39 | 0 | 26 | 153 | 1 | 128 | 1.53e-64 | 193 |
| Msa0508760 | AT3G11230.2 | 69.531 | 128 | 39 | 0 | 26 | 153 | 34 | 161 | 2.87e-64 | 194 |
| Msa0508760 | AT2G40110.2 | 83.495 | 103 | 17 | 0 | 26 | 128 | 1 | 103 | 4.58e-63 | 189 |
| Msa0508760 | AT3G08990.2 | 64.062 | 128 | 46 | 0 | 26 | 153 | 1 | 128 | 6.35e-60 | 182 |
| Msa0508760 | AT3G08990.1 | 64.062 | 128 | 46 | 0 | 26 | 153 | 1 | 128 | 6.35e-60 | 182 |
| Msa0508760 | AT3G08990.3 | 64.062 | 128 | 46 | 0 | 26 | 153 | 1 | 128 | 6.35e-60 | 182 |
| Msa0508760 | AT3G55890.4 | 66.102 | 118 | 40 | 0 | 26 | 143 | 1 | 118 | 1.49e-56 | 173 |
| Msa0508760 | AT3G55890.1 | 66.102 | 118 | 40 | 0 | 26 | 143 | 1 | 118 | 1.49e-56 | 173 |
| Msa0508760 | AT3G11230.4 | 73.529 | 102 | 27 | 0 | 26 | 127 | 1 | 102 | 4.81e-53 | 164 |
| Msa0508760 | AT3G11230.3 | 73.529 | 102 | 27 | 0 | 26 | 127 | 34 | 135 | 9.66e-53 | 164 |
| Msa0508760 | AT5G53940.1 | 57.812 | 128 | 54 | 0 | 26 | 153 | 1 | 128 | 5.60e-51 | 159 |
| Msa0508760 | AT3G55890.3 | 69.307 | 101 | 31 | 0 | 26 | 126 | 1 | 101 | 2.87e-50 | 156 |
| Msa0508760 | AT3G55890.2 | 69.307 | 101 | 31 | 0 | 26 | 126 | 1 | 101 | 2.87e-50 | 156 |
| Msa0508760 | AT2G40110.4 | 83.133 | 83 | 14 | 0 | 26 | 108 | 1 | 83 | 1.03e-49 | 155 |
| Msa0508760 | AT2G40110.3 | 83.133 | 83 | 14 | 0 | 26 | 108 | 1 | 83 | 1.03e-49 | 155 |
| Msa0508760 | AT4G27745.2 | 51.020 | 98 | 48 | 0 | 37 | 134 | 8 | 105 | 1.22e-33 | 114 |
| Msa0508760 | AT4G27745.3 | 51.020 | 98 | 48 | 0 | 37 | 134 | 8 | 105 | 1.22e-33 | 114 |
| Msa0508760 | AT4G27745.1 | 51.020 | 98 | 48 | 0 | 37 | 134 | 8 | 105 | 1.22e-33 | 114 |
| Msa0508760 | AT4G27745.4 | 51.020 | 98 | 48 | 0 | 37 | 134 | 8 | 105 | 1.22e-33 | 114 |
| Msa0508760 | AT4G27740.1 | 41.935 | 93 | 54 | 0 | 39 | 131 | 10 | 102 | 4.04e-22 | 85.5 |
Find 45 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCCTTCCTTGTACTTT+TGG | 0.231498 | 3_4:+56961499 | None:intergenic |
| AAAATCAACCAACCAAGTTT+TGG | 0.316971 | 3_4:+56960648 | None:intergenic |
| TCATCTTCTTCGCAGATTCA+TGG | 0.367324 | 3_4:-56963271 | Msa0508760:intron |
| CATCTTCTTCGCAGATTCAT+GGG | 0.371578 | 3_4:-56963270 | Msa0508760:intron |
| AGGCTTTCTTCATCCAACTA+TGG | 0.372826 | 3_4:+56960772 | None:intergenic |
| GAGGAGAGACCGATGATGAC+TGG | 0.424174 | 3_4:-56961687 | Msa0508760:CDS |
| GTCCTGATGGTAGCAATTAT+CGG | 0.430362 | 3_4:-56961057 | Msa0508760:CDS |
| GTTTCTTCTTGAATAATTGT+TGG | 0.434753 | 3_4:-56960619 | Msa0508760:three_prime_UTR |
| AGAGATACATCACATGATAC+TGG | 0.437426 | 3_4:+56960747 | None:intergenic |
| GAGATAAGCTTTCCCATGCC+TGG | 0.451402 | 3_4:+56962309 | None:intergenic |
| GACAGCGTGAATGTTTCTCT+TGG | 0.452417 | 3_4:-56961717 | Msa0508760:intron |
| TCGATTTGTAGCACCATAGT+TGG | 0.457460 | 3_4:-56960785 | Msa0508760:intron |
| TTGTTTGTGATCAATCTAGA+AGG | 0.468502 | 3_4:-56963243 | Msa0508760:CDS |
| GTGGGTTGTGGATCGATTGT+GGG | 0.474305 | 3_4:-56961636 | Msa0508760:CDS |
| TTGAATTCATGTACTAATGC+AGG | 0.480085 | 3_4:-56960538 | Msa0508760:three_prime_UTR |
| ATGTGAAACACTGACACAAC+AGG | 0.488134 | 3_4:-56960577 | Msa0508760:three_prime_UTR |
| TATTATAACCAAAACTTGGT+TGG | 0.495371 | 3_4:-56960656 | Msa0508760:three_prime_UTR |
| ATCCGATAATTGCTACCATC+AGG | 0.497420 | 3_4:+56961055 | None:intergenic |
| TTGGGCAGGTACAAGGTATC+AGG | 0.498809 | 3_4:-56961079 | Msa0508760:intron |
| ATTAGGAATGGCGAGATGAA+TGG | 0.499885 | 3_4:+56960986 | None:intergenic |
| TGTGGGTTGTGGATCGATTG+TGG | 0.505248 | 3_4:-56961637 | Msa0508760:CDS |
| TGTGTTATTGGGCAGGTACA+AGG | 0.508400 | 3_4:-56961086 | Msa0508760:intron |
| TAGACTTTCCACTCCAGGCA+TGG | 0.508508 | 3_4:-56962322 | Msa0508760:CDS |
| GTATTATTATAACCAAAACT+TGG | 0.510568 | 3_4:-56960660 | Msa0508760:three_prime_UTR |
| AGACTTTCCACTCCAGGCAT+GGG | 0.512987 | 3_4:-56962321 | Msa0508760:CDS |
| GTTGTGGATCGATTGTGGGT+TGG | 0.527280 | 3_4:-56961632 | Msa0508760:CDS |
| TGTCTTCGTATAAAGCAAGA+TGG | 0.550140 | 3_4:+56963190 | None:intergenic |
| AACAATGGAGCACATGTTGG+CGG | 0.552605 | 3_4:-56961031 | Msa0508760:CDS |
| ATACGAAGACATCGTTTCCA+AGG | 0.552914 | 3_4:-56963178 | Msa0508760:intron |
| AAGGAAAGTCTGTGCTTGAA+AGG | 0.559471 | 3_4:-56961485 | Msa0508760:intron |
| ATCAACAATGGAGCACATGT+TGG | 0.564033 | 3_4:-56961034 | Msa0508760:CDS |
| AGCAATTATCGGATCAACAA+TGG | 0.565705 | 3_4:-56961046 | Msa0508760:CDS |
| AAAGACCAAAAGTACAAGGA+AGG | 0.567472 | 3_4:-56961504 | Msa0508760:CDS |
| AGGAGAGACCGATGATGACT+GGG | 0.570959 | 3_4:-56961686 | Msa0508760:CDS |
| AAGGAATGTACAATTAGGAA+TGG | 0.574828 | 3_4:+56960974 | None:intergenic |
| ATGGGTGCGACAGTATCTGC+AGG | 0.576144 | 3_4:+56963209 | None:intergenic |
| ATCTTCTTCGCAGATTCATG+GGG | 0.576917 | 3_4:-56963269 | Msa0508760:intron |
| GTCTTCGTATAAAGCAAGAT+GGG | 0.583817 | 3_4:+56963191 | None:intergenic |
| AAGCTTTCCCATGCCTGGAG+TGG | 0.589161 | 3_4:+56962314 | None:intergenic |
| TACAAGGTATCAGGTCCTGA+TGG | 0.616196 | 3_4:-56961070 | Msa0508760:CDS |
| GTATGCAACCCAGTCATCAT+CGG | 0.616477 | 3_4:+56961678 | None:intergenic |
| TGTTTCTCTTGGCGAAACAG+AGG | 0.620615 | 3_4:-56961706 | Msa0508760:CDS |
| TACATCACATGATACTGGAA+AGG | 0.634635 | 3_4:+56960752 | None:intergenic |
| AGGACATAAACACTTACACT+AGG | 0.644979 | 3_4:-56960518 | Msa0508760:three_prime_UTR |
| TGCAGTTGTTGTAAGAAACG+TGG | 0.670568 | 3_4:+56963387 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTGAAAATATAGAAAAAA+CGG | + | chr3_4:56960822-56960841 | None:intergenic | 15.0% |
| !!! | AAGTCTAAAATAATAACATA+GGG | + | chr3_4:56961587-56961606 | None:intergenic | 15.0% |
| !!! | AAAGTCTAAAATAATAACAT+AGG | + | chr3_4:56961588-56961607 | None:intergenic | 15.0% |
| !!! | ATGTTTTATTTCAATTTCTT+AGG | + | chr3_4:56961682-56961701 | None:intergenic | 15.0% |
| !!! | TTTTAAATTAGAGTTACTTA+TGG | - | chr3_4:56962027-56962046 | Msa0508760:intron | 15.0% |
| !!! | AGATTAAAAACTAACATTTT+CGG | + | chr3_4:56962107-56962126 | None:intergenic | 15.0% |
| !!! | TAAGATGTTTTAATAAACAT+GGG | + | chr3_4:56962653-56962672 | None:intergenic | 15.0% |
| !!! | ATAAGATGTTTTAATAAACA+TGG | + | chr3_4:56962654-56962673 | None:intergenic | 15.0% |
| !!! | ATATTTACAAAGTTTCAAGT+TGG | - | chr3_4:56961132-56961151 | Msa0508760:intron | 20.0% |
| !!! | GTTACTATTCTGAAAAATTT+AGG | - | chr3_4:56961460-56961479 | Msa0508760:intron | 20.0% |
| !!! | ATTTATGGTAATTTTGTTGT+TGG | - | chr3_4:56961503-56961522 | Msa0508760:CDS | 20.0% |
| !!! | TTTATGGTAATTTTGTTGTT+GGG | - | chr3_4:56961504-56961523 | Msa0508760:CDS | 20.0% |
| !!! | ACTTGATAGATAAATTTTAG+CGG | + | chr3_4:56961995-56962014 | None:intergenic | 20.0% |
| !! | AATATGAAATCATATCATTG+CGG | - | chr3_4:56962053-56962072 | Msa0508760:intron | 20.0% |
| !! | CAAAAATATATTGTAACAAG+AGG | + | chr3_4:56962134-56962153 | None:intergenic | 20.0% |
| !! | TCAATTATATCCTTAAAAAG+AGG | + | chr3_4:56962163-56962182 | None:intergenic | 20.0% |
| !! | AATCTAAACCATTACATAAT+TGG | + | chr3_4:56962802-56962821 | None:intergenic | 20.0% |
| !! | ATGAAAATGAATTGTGTTAT+TGG | - | chr3_4:56962824-56962843 | Msa0508760:intron | 20.0% |
| !!! | TGAAAATGAATTGTGTTATT+GGG | - | chr3_4:56962825-56962844 | Msa0508760:intron | 20.0% |
| !! | TTTATATTCGAACTTCTAAT+TGG | - | chr3_4:56963107-56963126 | Msa0508760:intron | 20.0% |
| !! | TTATATTCGAACTTCTAATT+GGG | - | chr3_4:56963108-56963127 | Msa0508760:intron | 20.0% |
| !! | GTATTATTATAACCAAAACT+TGG | - | chr3_4:56963262-56963281 | Msa0508760:intron | 20.0% |
| ! | GATAAAGAAGAAGAAATGAA+TGG | + | chr3_4:56960608-56960627 | None:intergenic | 25.0% |
| ! | AAAAAAAAAGAGAGAGAGAA+AGG | + | chr3_4:56960784-56960803 | None:intergenic | 25.0% |
| ! | ACTGATGAATAAACAATGAA+TGG | + | chr3_4:56960844-56960863 | None:intergenic | 25.0% |
| ! | ATAAAGAAGGACAAATCAAT+TGG | + | chr3_4:56960888-56960907 | None:intergenic | 25.0% |
| ! | CATTAAGCAATCAATAAAGA+AGG | + | chr3_4:56960901-56960920 | None:intergenic | 25.0% |
| ! | TTGCACTGTATTTATTATCT+TGG | - | chr3_4:56961014-56961033 | Msa0508760:CDS | 25.0% |
| ! | ACTGTATTTATTATCTTGGT+TGG | - | chr3_4:56961018-56961037 | Msa0508760:CDS | 25.0% |
| ! | ATTGAGAGTAGTAGTATTAT+AGG | - | chr3_4:56961055-56961074 | Msa0508760:CDS | 25.0% |
| ! | AGTAGTATTATAGGCTAAAT+TGG | - | chr3_4:56961064-56961083 | Msa0508760:CDS | 25.0% |
| !!! | GGTTATTTTAAACTTCAAGT+TGG | - | chr3_4:56961103-56961122 | Msa0508760:intron | 25.0% |
| ! | TAGTAACGTTACAATAAGTT+TGG | - | chr3_4:56961165-56961184 | Msa0508760:intron | 25.0% |
| ! | ACTTATAATATGTGGCAAAA+AGG | + | chr3_4:56961192-56961211 | None:intergenic | 25.0% |
| ! | CAATGTGAACTTATAATATG+TGG | + | chr3_4:56961200-56961219 | None:intergenic | 25.0% |
| !! | ATATCATCCAATAGTATTGA+GGG | + | chr3_4:56961404-56961423 | None:intergenic | 25.0% |
| !!! | TGTTTTCTTCTGGAAATTTA+TGG | - | chr3_4:56961488-56961507 | Msa0508760:CDS | 25.0% |
| ! | GAAAAACCCAATTAAGAATT+GGG | + | chr3_4:56961533-56961552 | None:intergenic | 25.0% |
| ! | TGAAAAACCCAATTAAGAAT+TGG | + | chr3_4:56961534-56961553 | None:intergenic | 25.0% |
| ! | GTTTAAAAAGAAGAAAGAGA+AGG | - | chr3_4:56961753-56961772 | Msa0508760:intron | 25.0% |
| !!! | ATTTTAGCGGTTAACTTTTT+AGG | + | chr3_4:56961982-56962001 | None:intergenic | 25.0% |
| ! | GTAACTCTAATTTAAAAGCT+TGG | + | chr3_4:56962024-56962043 | None:intergenic | 25.0% |
| ! | TGGAAATATGTAAGATTATG+AGG | - | chr3_4:56962310-56962329 | Msa0508760:CDS | 25.0% |
| ! | ACTAAAAGCTACATAAAAGA+AGG | + | chr3_4:56962361-56962380 | None:intergenic | 25.0% |
| ! | GACATCACTTTGATTATATT+AGG | + | chr3_4:56962490-56962509 | None:intergenic | 25.0% |
| !! | CATTCATCTGACTAATTTTA+GGG | + | chr3_4:56962976-56962995 | None:intergenic | 25.0% |
| !! | ACATTCATCTGACTAATTTT+AGG | + | chr3_4:56962977-56962996 | None:intergenic | 25.0% |
| ! | TAAAATTAGTCAGATGAATG+TGG | - | chr3_4:56962976-56962995 | Msa0508760:intron | 25.0% |
| ! | ACAATTTGAGTAGATCTAAT+TGG | - | chr3_4:56963051-56963070 | Msa0508760:intron | 25.0% |
| ! | TATTATAACCAAAACTTGGT+TGG | - | chr3_4:56963266-56963285 | Msa0508760:intron | 25.0% |
| ! | GTTTCTTCTTGAATAATTGT+TGG | - | chr3_4:56963303-56963322 | Msa0508760:intron | 25.0% |
| TTGTTTGTGATCAATCTAGA+AGG | - | chr3_4:56960679-56960698 | Msa0508760:three_prime_UTR | 30.0% | |
| ATTGGATGTTTGATCTCTTA+CGG | - | chr3_4:56961082-56961101 | Msa0508760:intron | 30.0% | |
| !! | AATTTGTTGAGAATCAATGC+TGG | + | chr3_4:56961379-56961398 | None:intergenic | 30.0% |
| AAATTCTCCCTCAATACTAT+TGG | - | chr3_4:56961394-56961413 | Msa0508760:intron | 30.0% | |
| CATATCATCCAATAGTATTG+AGG | + | chr3_4:56961405-56961424 | None:intergenic | 30.0% | |
| CTCAATACTATTGGATGATA+TGG | - | chr3_4:56961403-56961422 | Msa0508760:intron | 30.0% | |
| AATACTATTGGATGATATGG+AGG | - | chr3_4:56961406-56961425 | Msa0508760:intron | 30.0% | |
| ! | ACACTAGCATTATTTTCCTT+TGG | + | chr3_4:56961442-56961461 | None:intergenic | 30.0% |
| !!! | TTAGGCTTTTTGTTTTCTTC+TGG | - | chr3_4:56961478-56961497 | Msa0508760:intron | 30.0% |
| ATAATAAGATGATGCACAAG+CGG | + | chr3_4:56961836-56961855 | None:intergenic | 30.0% | |
| !! | ACACTAAAGGAGTATTAAGA+AGG | - | chr3_4:56961914-56961933 | Msa0508760:intron | 30.0% |
| !! | GTAGCTTTTAGTTACAGAAA+TGG | - | chr3_4:56962369-56962388 | Msa0508760:intron | 30.0% |
| CATAAAGAGTCTCTTTAGAT+TGG | - | chr3_4:56962518-56962537 | Msa0508760:intron | 30.0% | |
| ! | GTTTATTTGAGATTATCCAC+TGG | - | chr3_4:56962540-56962559 | Msa0508760:intron | 30.0% |
| AGACTATTTGAGAGAACTTA+TGG | - | chr3_4:56962577-56962596 | Msa0508760:intron | 30.0% | |
| TACATAATTGGACTGTGTTT+GGG | + | chr3_4:56962790-56962809 | None:intergenic | 30.0% | |
| TTACATAATTGGACTGTGTT+TGG | + | chr3_4:56962791-56962810 | None:intergenic | 30.0% | |
| AACACAGTCCAATTATGTAA+TGG | - | chr3_4:56962791-56962810 | Msa0508760:intron | 30.0% | |
| AAGGAATGTACAATTAGGAA+TGG | + | chr3_4:56962951-56962970 | None:intergenic | 30.0% | |
| !!! | TCTGACTAATTTTAGGGTTA+AGG | + | chr3_4:56962970-56962989 | None:intergenic | 30.0% |
| AGATGAATGTGGATTTATAC+AGG | - | chr3_4:56962987-56963006 | Msa0508760:intron | 30.0% | |
| ! | AAAATCAACCAACCAAGTTT+TGG | + | chr3_4:56963277-56963296 | None:intergenic | 30.0% |
| !! | TTGGTTGGTTGATTTTATGT+TGG | - | chr3_4:56963281-56963300 | Msa0508760:intron | 30.0% |
| TTGAATTCATGTACTAATGC+AGG | - | chr3_4:56963384-56963403 | Msa0508760:CDS | 30.0% | |
| TGGTTGAAGATTAACGTTAC+CGG | + | chr3_4:56960588-56960607 | None:intergenic | 35.0% | |
| GTCTTCGTATAAAGCAAGAT+GGG | + | chr3_4:56960734-56960753 | None:intergenic | 35.0% | |
| TGTCTTCGTATAAAGCAAGA+TGG | + | chr3_4:56960735-56960754 | None:intergenic | 35.0% | |
| AGAGAGAAAGGTGATGAAAA+AGG | + | chr3_4:56960772-56960791 | None:intergenic | 35.0% | |
| TGGAGGATATTATCTTCCAA+AGG | - | chr3_4:56961423-56961442 | Msa0508760:intron | 35.0% | |
| AAACCCAATTAAGAATTGGG+AGG | + | chr3_4:56961530-56961549 | None:intergenic | 35.0% | |
| !! | TATTTTAGACTTTCCACTCC+AGG | - | chr3_4:56961595-56961614 | Msa0508760:intron | 35.0% |
| TGCGAAGACATTACCATTAT+TGG | + | chr3_4:56961729-56961748 | None:intergenic | 35.0% | |
| TAATAAGATGATGCACAAGC+GGG | + | chr3_4:56961835-56961854 | None:intergenic | 35.0% | |
| !! | CTAAAGGAGTATTAAGAAGG+AGG | - | chr3_4:56961917-56961936 | Msa0508760:intron | 35.0% |
| AGTATTAAGAAGGAGGTTCA+GGG | - | chr3_4:56961924-56961943 | Msa0508760:intron | 35.0% | |
| !! | GTTAACTTTTTAGGAGGAGA+GGG | + | chr3_4:56961973-56961992 | None:intergenic | 35.0% |
| !! | TTAGCGGTTAACTTTTTAGG+AGG | + | chr3_4:56961979-56961998 | None:intergenic | 35.0% |
| ! | AACATTTTCGGTCAACACTT+TGG | + | chr3_4:56962095-56962114 | None:intergenic | 35.0% |
| ! | TTTGCAGTTGCCTCTTTTTA+AGG | - | chr3_4:56962150-56962169 | Msa0508760:intron | 35.0% |
| !! | GTACTTTTGGTCTTTTTCGT+GGG | + | chr3_4:56962413-56962432 | None:intergenic | 35.0% |
| !! | TGTACTTTTGGTCTTTTTCG+TGG | + | chr3_4:56962414-56962433 | None:intergenic | 35.0% |
| ! | CGAAAAAGACCAAAAGTACA+AGG | - | chr3_4:56962414-56962433 | Msa0508760:intron | 35.0% |
| ! | AAAGACCAAAAGTACAAGGA+AGG | - | chr3_4:56962418-56962437 | Msa0508760:intron | 35.0% |
| ! | ACTTTCCTTCCTTGTACTTT+TGG | + | chr3_4:56962426-56962445 | None:intergenic | 35.0% |
| ! | AATGAATTGTGTTATTGGGC+AGG | - | chr3_4:56962829-56962848 | Msa0508760:intron | 35.0% |
| AGCAATTATCGGATCAACAA+TGG | - | chr3_4:56962876-56962895 | Msa0508760:intron | 35.0% | |
| GGGTTAAGGAATGTACAATT+AGG | + | chr3_4:56962956-56962975 | None:intergenic | 35.0% | |
| TACATCACATGATACTGGAA+AGG | + | chr3_4:56963173-56963192 | None:intergenic | 35.0% | |
| AGAGATACATCACATGATAC+TGG | + | chr3_4:56963178-56963197 | None:intergenic | 35.0% | |
| AGGACATAAACACTTACACT+AGG | - | chr3_4:56963404-56963423 | Msa0508760:CDS | 35.0% | |
| TGCAGTTGTTGTAAGAAACG+TGG | + | chr3_4:56960538-56960557 | None:intergenic | 40.0% | |
| TCATCTTCTTCGCAGATTCA+TGG | - | chr3_4:56960651-56960670 | Msa0508760:three_prime_UTR | 40.0% | |
| CATCTTCTTCGCAGATTCAT+GGG | - | chr3_4:56960652-56960671 | Msa0508760:three_prime_UTR | 40.0% | |
| ATCTTCTTCGCAGATTCATG+GGG | - | chr3_4:56960653-56960672 | Msa0508760:three_prime_UTR | 40.0% | |
| ATACGAAGACATCGTTTCCA+AGG | - | chr3_4:56960744-56960763 | Msa0508760:three_prime_UTR | 40.0% | |
| AGGTGATGAAAAAGGAACCT+TGG | + | chr3_4:56960764-56960783 | None:intergenic | 40.0% | |
| GCTGGTTACGATTTACAACT+TGG | + | chr3_4:56961361-56961380 | None:intergenic | 40.0% | |
| ATTGAGACCATCGCCAATAA+TGG | - | chr3_4:56961713-56961732 | Msa0508760:CDS | 40.0% | |
| GACATTACCATTATTGGCGA+TGG | + | chr3_4:56961723-56961742 | None:intergenic | 40.0% | |
| ! | AATGGTAATGTCTTCGCATG+TGG | - | chr3_4:56961731-56961750 | Msa0508760:intron | 40.0% |
| ! | GTATCGTACTGGTATGAGTT+TGG | - | chr3_4:56961891-56961910 | Msa0508760:intron | 40.0% |
| GGTATGAGTTTGGACACTAA+AGG | - | chr3_4:56961901-56961920 | Msa0508760:intron | 40.0% | |
| GAGTATTAAGAAGGAGGTTC+AGG | - | chr3_4:56961923-56961942 | Msa0508760:intron | 40.0% | |
| !! | GGTTAACTTTTTAGGAGGAG+AGG | + | chr3_4:56961974-56961993 | None:intergenic | 40.0% |
| ! | TGTAGCTGACATTTTCTGTG+TGG | - | chr3_4:56962267-56962286 | Msa0508760:intron | 40.0% |
| ! | GTAGCTGACATTTTCTGTGT+GGG | - | chr3_4:56962268-56962287 | Msa0508760:intron | 40.0% |
| !! | TACAGAAATGGTGCTGTTTC+AGG | - | chr3_4:56962381-56962400 | Msa0508760:intron | 40.0% |
| AAGGAAAGTCTGTGCTTGAA+AGG | - | chr3_4:56962437-56962456 | Msa0508760:intron | 40.0% | |
| GTCCTGATGGTAGCAATTAT+CGG | - | chr3_4:56962865-56962884 | Msa0508760:intron | 40.0% | |
| ATCCGATAATTGCTACCATC+AGG | + | chr3_4:56962870-56962889 | None:intergenic | 40.0% | |
| ATCAACAATGGAGCACATGT+TGG | - | chr3_4:56962888-56962907 | Msa0508760:intron | 40.0% | |
| ATTAGGAATGGCGAGATGAA+TGG | + | chr3_4:56962939-56962958 | None:intergenic | 40.0% | |
| ! | TCGATTTGTAGCACCATAGT+TGG | - | chr3_4:56963137-56963156 | Msa0508760:intron | 40.0% |
| AGGCTTTCTTCATCCAACTA+TGG | + | chr3_4:56963153-56963172 | None:intergenic | 40.0% | |
| ATGTGAAACACTGACACAAC+AGG | - | chr3_4:56963345-56963364 | Msa0508760:intron | 40.0% | |
| TGGGCCTCCCAATTCTTAAT+TGG | - | chr3_4:56961523-56961542 | Msa0508760:intron | 45.0% | |
| GGGCCTCCCAATTCTTAATT+GGG | - | chr3_4:56961524-56961543 | Msa0508760:intron | 45.0% | |
| TATGTCGATCAAGTCCCTGA+AGG | - | chr3_4:56961867-56961886 | Msa0508760:intron | 45.0% | |
| ACCAGTACGATACACCTTCA+GGG | + | chr3_4:56961884-56961903 | None:intergenic | 45.0% | |
| TACCAGTACGATACACCTTC+AGG | + | chr3_4:56961885-56961904 | None:intergenic | 45.0% | |
| GACAGCGTGAATGTTTCTCT+TGG | - | chr3_4:56962205-56962224 | Msa0508760:intron | 45.0% | |
| TGTTTCTCTTGGCGAAACAG+AGG | - | chr3_4:56962216-56962235 | Msa0508760:intron | 45.0% | |
| GTATGCAACCCAGTCATCAT+CGG | + | chr3_4:56962247-56962266 | None:intergenic | 45.0% | |
| !! | GACATTTTCTGTGTGGGTTG+TGG | - | chr3_4:56962274-56962293 | Msa0508760:intron | 45.0% |
| CTTACAAGTGCTTATGCCAG+TGG | + | chr3_4:56962559-56962578 | None:intergenic | 45.0% | |
| ! | TGTGTTATTGGGCAGGTACA+AGG | - | chr3_4:56962836-56962855 | Msa0508760:intron | 45.0% |
| ! | TACAAGGTATCAGGTCCTGA+TGG | - | chr3_4:56962852-56962871 | Msa0508760:intron | 45.0% |
| AACAATGGAGCACATGTTGG+CGG | - | chr3_4:56962891-56962910 | Msa0508760:intron | 45.0% | |
| GTGTGTGTGTGTGTGTCTGT+TGG | + | chr3_4:56960566-56960585 | None:intergenic | 50.0% | |
| ACAGACACACACACACACAC+CGG | - | chr3_4:56960566-56960585 | Msa0508760:three_prime_UTR | 50.0% | |
| TAGACTTTCCACTCCAGGCA+TGG | - | chr3_4:56961600-56961619 | Msa0508760:intron | 50.0% | |
| AGACTTTCCACTCCAGGCAT+GGG | - | chr3_4:56961601-56961620 | Msa0508760:intron | 50.0% | |
| GAGATAAGCTTTCCCATGCC+TGG | + | chr3_4:56961616-56961635 | None:intergenic | 50.0% | |
| ! | TCCCTGAAGGTGTATCGTAC+TGG | - | chr3_4:56961880-56961899 | Msa0508760:intron | 50.0% |
| AGGAGAGACCGATGATGACT+GGG | - | chr3_4:56962236-56962255 | Msa0508760:intron | 50.0% | |
| ! | TGTGGGTTGTGGATCGATTG+TGG | - | chr3_4:56962285-56962304 | Msa0508760:intron | 50.0% |
| ! | GTGGGTTGTGGATCGATTGT+GGG | - | chr3_4:56962286-56962305 | Msa0508760:intron | 50.0% |
| GTTGTGGATCGATTGTGGGT+TGG | - | chr3_4:56962290-56962309 | Msa0508760:intron | 50.0% | |
| ! | TTGGGCAGGTACAAGGTATC+AGG | - | chr3_4:56962843-56962862 | Msa0508760:intron | 50.0% |
| ATGGGTGCGACAGTATCTGC+AGG | + | chr3_4:56960716-56960735 | None:intergenic | 55.0% | |
| AAGCTTTCCCATGCCTGGAG+TGG | + | chr3_4:56961611-56961630 | None:intergenic | 55.0% | |
| ATGATGCACAAGCGGGCATG+TGG | + | chr3_4:56961828-56961847 | None:intergenic | 55.0% | |
| GAGGAGAGACCGATGATGAC+TGG | - | chr3_4:56962235-56962254 | Msa0508760:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 56960517 | 56963427 | 56960517 | ID=Msa0508760;Name=Msa0508760 |
| chr3_4 | mRNA | 56960517 | 56963427 | 56960517 | ID=Msa0508760-mRNA-1;Parent=Msa0508760;Name=Msa0508760-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|1|0.85|1|0.33|0.14|7|304|154 |
| chr3_4 | exon | 56960517 | 56960796 | 56960517 | ID=Msa0508760-mRNA-1:exon:12914;Parent=Msa0508760-mRNA-1 |
| chr3_4 | exon | 56960985 | 56961093 | 56960985 | ID=Msa0508760-mRNA-1:exon:12913;Parent=Msa0508760-mRNA-1 |
| chr3_4 | exon | 56961486 | 56961541 | 56961486 | ID=Msa0508760-mRNA-1:exon:12912;Parent=Msa0508760-mRNA-1 |
| chr3_4 | exon | 56961626 | 56961734 | 56961626 | ID=Msa0508760-mRNA-1:exon:12911;Parent=Msa0508760-mRNA-1 |
| chr3_4 | exon | 56962298 | 56962341 | 56962298 | ID=Msa0508760-mRNA-1:exon:12910;Parent=Msa0508760-mRNA-1 |
| chr3_4 | exon | 56963179 | 56963278 | 56963179 | ID=Msa0508760-mRNA-1:exon:12909;Parent=Msa0508760-mRNA-1 |
| chr3_4 | exon | 56963357 | 56963427 | 56963357 | ID=Msa0508760-mRNA-1:exon:12908;Parent=Msa0508760-mRNA-1 |
| chr3_4 | CDS | 56963357 | 56963427 | 56963357 | ID=Msa0508760-mRNA-1:cds;Parent=Msa0508760-mRNA-1 |
| chr3_4 | CDS | 56963179 | 56963278 | 56963179 | ID=Msa0508760-mRNA-1:cds;Parent=Msa0508760-mRNA-1 |
| chr3_4 | CDS | 56962298 | 56962341 | 56962298 | ID=Msa0508760-mRNA-1:cds;Parent=Msa0508760-mRNA-1 |
| chr3_4 | CDS | 56961626 | 56961734 | 56961626 | ID=Msa0508760-mRNA-1:cds;Parent=Msa0508760-mRNA-1 |
| chr3_4 | CDS | 56961486 | 56961541 | 56961486 | ID=Msa0508760-mRNA-1:cds;Parent=Msa0508760-mRNA-1 |
| chr3_4 | CDS | 56961009 | 56961093 | 56961009 | ID=Msa0508760-mRNA-1:cds;Parent=Msa0508760-mRNA-1 |
| chr3_4 | three_prime_UTR | 56960985 | 56961008 | 56960985 | ID=Msa0508760-mRNA-1:three_prime_utr;Parent=Msa0508760-mRNA-1 |
| chr3_4 | three_prime_UTR | 56960517 | 56960796 | 56960517 | ID=Msa0508760-mRNA-1:three_prime_utr;Parent=Msa0508760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
