Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802790 | XP_003612805.1 | 97.351 | 302 | 8 | 0 | 1 | 302 | 1 | 302 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802790 | sp|Q9FVR6|Y1222_ARATH | 66.337 | 303 | 92 | 4 | 1 | 301 | 1 | 295 | 2.80e-145 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802790 | G7KCB8 | 97.351 | 302 | 8 | 0 | 1 | 302 | 1 | 302 | 0.0 | 589 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005690 | Msa0802790 | 0.821437 | 4.039438e-53 | -8.615850e-47 |
| Msa0017420 | Msa0802790 | 0.824118 | 9.595837e-54 | -8.615850e-47 |
| Msa0022230 | Msa0802790 | 0.830709 | 2.521312e-55 | -8.615850e-47 |
| Msa0022960 | Msa0802790 | 0.833802 | 4.326742e-56 | -8.615850e-47 |
| Msa0037040 | Msa0802790 | 0.803106 | 4.083146e-49 | -8.615850e-47 |
| Msa0053360 | Msa0802790 | 0.814793 | 1.285591e-51 | -8.615850e-47 |
| Msa0081700 | Msa0802790 | 0.806847 | 6.744114e-50 | -8.615850e-47 |
| Msa0090060 | Msa0802790 | 0.805255 | 1.458127e-49 | -8.615850e-47 |
| Msa0090350 | Msa0802790 | 0.802888 | 4.529343e-49 | -8.615850e-47 |
| Msa0091340 | Msa0802790 | 0.829658 | 4.551440e-55 | -8.615850e-47 |
| Msa0096510 | Msa0802790 | 0.813780 | 2.152907e-51 | -8.615850e-47 |
| Msa0098800 | Msa0802790 | 0.834027 | 3.800319e-56 | -8.615850e-47 |
| Msa0105500 | Msa0802790 | 0.825862 | 3.718436e-54 | -8.615850e-47 |
| Msa0615430 | Msa0802790 | 0.809758 | 1.615532e-50 | -8.615850e-47 |
| Msa0619460 | Msa0802790 | 0.800483 | 1.411183e-48 | -8.615850e-47 |
| Msa0625900 | Msa0802790 | 0.804808 | 1.808469e-49 | -8.615850e-47 |
| Msa0642150 | Msa0802790 | 0.822417 | 2.395034e-53 | -8.615850e-47 |
| Msa0644610 | Msa0802790 | 0.803308 | 3.709711e-49 | -8.615850e-47 |
| Msa0654880 | Msa0802790 | 0.801537 | 8.592820e-49 | -8.615850e-47 |
| Msa0659590 | Msa0802790 | 0.804644 | 1.956571e-49 | -8.615850e-47 |
| Msa0663690 | Msa0802790 | 0.804057 | 2.592798e-49 | -8.615850e-47 |
| Msa0668000 | Msa0802790 | 0.807320 | 5.355290e-50 | -8.615850e-47 |
| Msa0691740 | Msa0802790 | 0.800650 | 1.304472e-48 | -8.615850e-47 |
| Msa0692870 | Msa0802790 | 0.803443 | 3.478330e-49 | -8.615850e-47 |
| Msa0698480 | Msa0802790 | 0.815755 | 7.857326e-52 | -8.615850e-47 |
| Msa0698650 | Msa0802790 | 0.812176 | 4.837082e-51 | -8.615850e-47 |
| Msa0702020 | Msa0802790 | 0.806286 | 8.853631e-50 | -8.615850e-47 |
| Msa0705710 | Msa0802790 | 0.836306 | 1.011184e-56 | -8.615850e-47 |
| Msa0712100 | Msa0802790 | 0.817785 | 2.753538e-52 | -8.615850e-47 |
| Msa0712670 | Msa0802790 | 0.802671 | 5.022764e-49 | -8.615850e-47 |
| Msa0717540 | Msa0802790 | 0.803589 | 3.243995e-49 | -8.615850e-47 |
| Msa0720130 | Msa0802790 | 0.860222 | 2.401656e-63 | -8.615850e-47 |
| Msa0733460 | Msa0802790 | 0.800676 | 1.289129e-48 | -8.615850e-47 |
| Msa0761930 | Msa0802790 | 0.813583 | 2.378977e-51 | -8.615850e-47 |
| Msa0762480 | Msa0802790 | 0.802532 | 5.365282e-49 | -8.615850e-47 |
| Msa0768240 | Msa0802790 | 0.802871 | 4.566966e-49 | -8.615850e-47 |
| Msa0791430 | Msa0802790 | 0.808580 | 2.888383e-50 | -8.615850e-47 |
| Msa0797980 | Msa0802790 | 0.802591 | 5.216591e-49 | -8.615850e-47 |
| Msa0802790 | Msa0805000 | 0.826564 | 2.531851e-54 | -8.615850e-47 |
| Msa0802790 | Msa0805030 | 0.837000 | 6.729369e-57 | -8.615850e-47 |
| Msa0802790 | Msa0840450 | 0.819687 | 1.018919e-52 | -8.615850e-47 |
| Msa0802790 | Msa0846070 | 0.802303 | 5.981616e-49 | -8.615850e-47 |
| Msa0802790 | Msa0861400 | 0.805871 | 1.082804e-49 | -8.615850e-47 |
| Msa0802790 | Msa0880310 | 0.808166 | 3.540217e-50 | -8.615850e-47 |
| Msa0802790 | Msa0934290 | 0.804841 | 1.780206e-49 | -8.615850e-47 |
| Msa0802790 | Msa0949840 | 0.820977 | 5.156116e-53 | -8.615850e-47 |
| Msa0802790 | Msa0967900 | 0.819740 | 9.911577e-53 | -8.615850e-47 |
| Msa0802790 | Msa0978290 | 0.850566 | 1.563491e-60 | -8.615850e-47 |
| Msa0802790 | Msa0993590 | 0.808076 | 3.698908e-50 | -8.615850e-47 |
| Msa0802790 | Msa1015020 | 0.826543 | 2.560328e-54 | -8.615850e-47 |
| Msa0802790 | Msa1029570 | 0.809423 | 1.906702e-50 | -8.615850e-47 |
| Msa0802790 | Msa1032790 | 0.819722 | 1.000197e-52 | -8.615850e-47 |
| Msa0802790 | Msa1045860 | 0.845361 | 4.260415e-59 | -8.615850e-47 |
| Msa0802790 | Msa1045950 | 0.843992 | 9.959469e-59 | -8.615850e-47 |
| Msa0802790 | Msa1056590 | 0.822397 | 2.421212e-53 | -8.615850e-47 |
| Msa0802790 | Msa1071380 | 0.813108 | 3.024434e-51 | -8.615850e-47 |
| Msa0802790 | Msa1087410 | 0.833398 | 5.458259e-56 | -8.615850e-47 |
| Msa0802790 | Msa1134150 | 0.808972 | 2.381861e-50 | -8.615850e-47 |
| Msa0802790 | Msa1134230 | 0.809679 | 1.679201e-50 | -8.615850e-47 |
| Msa0802790 | Msa1156530 | 0.805655 | 1.201766e-49 | -8.615850e-47 |
| Msa0802790 | Msa1182400 | 0.812066 | 5.110682e-51 | -8.615850e-47 |
| Msa0802790 | Msa1193680 | 0.800539 | 1.374823e-48 | -8.615850e-47 |
| Msa0802790 | Msa1198830 | 0.816062 | 6.709774e-52 | -8.615850e-47 |
| Msa0802790 | Msa1277830 | 0.812720 | 3.678733e-51 | -8.615850e-47 |
| Msa0802790 | Msa1277890 | 0.800917 | 1.150629e-48 | -8.615850e-47 |
| Msa0802790 | Msa1277930 | 0.807213 | 5.640157e-50 | -8.615850e-47 |
| Msa0802790 | Msa1320660 | 0.821593 | 3.718727e-53 | -8.615850e-47 |
| Msa0802790 | Msa1327690 | 0.810523 | 1.104795e-50 | -8.615850e-47 |
| Msa0802790 | Msa1346220 | 0.817399 | 3.365535e-52 | -8.615850e-47 |
| Msa0802790 | Msa1346340 | 0.812459 | 4.194812e-51 | -8.615850e-47 |
| Msa0802790 | Msa1348860 | 0.826885 | 2.121767e-54 | -8.615850e-47 |
| Msa0802790 | Msa1350350 | 0.803589 | 3.244115e-49 | -8.615850e-47 |
| Msa0802790 | Msa1371060 | 0.853965 | 1.686143e-61 | -8.615850e-47 |
| Msa0802790 | Msa1371540 | 0.802058 | 6.715681e-49 | -8.615850e-47 |
| Msa0802790 | Msa1373310 | 0.823376 | 1.432340e-53 | -8.615850e-47 |
| Msa0802790 | Msa1375980 | 0.815750 | 7.877670e-52 | -8.615850e-47 |
| Msa0802790 | Msa1381830 | 0.826974 | 2.020196e-54 | -8.615850e-47 |
| Msa0802790 | Msa1392570 | 0.824813 | 6.585718e-54 | -8.615850e-47 |
| Msa0802790 | Msa1413360 | 0.816779 | 4.637184e-52 | -8.615850e-47 |
| Msa0802790 | Msa1418780 | 0.807999 | 3.840846e-50 | -8.615850e-47 |
| Msa0802790 | Msa1431240 | 0.819816 | 9.520373e-53 | -8.615850e-47 |
| Msa0802790 | Msa1432250 | 0.800555 | 1.364433e-48 | -8.615850e-47 |
| Msa0138340 | Msa0802790 | 0.809690 | 1.670849e-50 | -8.615850e-47 |
| Msa0139920 | Msa0802790 | 0.828015 | 1.137134e-54 | -8.615850e-47 |
| Msa0147800 | Msa0802790 | 0.826465 | 2.672631e-54 | -8.615850e-47 |
| Msa0147960 | Msa0802790 | 0.805265 | 1.451059e-49 | -8.615850e-47 |
| Msa0151210 | Msa0802790 | 0.825374 | 4.853214e-54 | -8.615850e-47 |
| Msa0154710 | Msa0802790 | 0.822171 | 2.732514e-53 | -8.615850e-47 |
| Msa0155030 | Msa0802790 | 0.810867 | 9.309900e-51 | -8.615850e-47 |
| Msa0174060 | Msa0802790 | 0.822682 | 2.078637e-53 | -8.615850e-47 |
| Msa0178440 | Msa0802790 | 0.808265 | 3.371544e-50 | -8.615850e-47 |
| Msa0194750 | Msa0802790 | 0.810647 | 1.038988e-50 | -8.615850e-47 |
| Msa0208040 | Msa0802790 | 0.810881 | 9.243572e-51 | -8.615850e-47 |
| Msa0225070 | Msa0802790 | 0.814543 | 1.460038e-51 | -8.615850e-47 |
| Msa0238530 | Msa0802790 | 0.822006 | 2.984062e-53 | -8.615850e-47 |
| Msa0372250 | Msa0802790 | 0.800999 | 1.107514e-48 | -8.615850e-47 |
| Msa0400900 | Msa0802790 | 0.804351 | 2.252600e-49 | -8.615850e-47 |
| Msa0449220 | Msa0802790 | 0.840559 | 8.084675e-58 | -8.615850e-47 |
| Msa0315010 | Msa0802790 | 0.819824 | 9.483581e-53 | -8.615850e-47 |
| Msa0330770 | Msa0802790 | 0.806950 | 6.413020e-50 | -8.615850e-47 |
| Msa0483090 | Msa0802790 | 0.824562 | 7.545055e-54 | -8.615850e-47 |
| Msa0484890 | Msa0802790 | 0.816643 | 4.975609e-52 | -8.615850e-47 |
| Msa0499870 | Msa0802790 | 0.816964 | 4.215785e-52 | -8.615850e-47 |
| Msa0508760 | Msa0802790 | 0.842364 | 2.705891e-58 | -8.615850e-47 |
| Msa0508770 | Msa0802790 | 0.836935 | 6.988025e-57 | -8.615850e-47 |
| Msa0515400 | Msa0802790 | 0.816568 | 5.170259e-52 | -8.615850e-47 |
| Msa0525800 | Msa0802790 | 0.802329 | 5.907076e-49 | -8.615850e-47 |
| Msa0527210 | Msa0802790 | 0.806115 | 9.620366e-50 | -8.615850e-47 |
| Msa0528830 | Msa0802790 | 0.804962 | 1.679579e-49 | -8.615850e-47 |
| Msa0538050 | Msa0802790 | 0.814931 | 1.197915e-51 | -8.615850e-47 |
| Msa0565150 | Msa0802790 | 0.820305 | 7.356154e-53 | -8.615850e-47 |
| Msa0572820 | Msa0802790 | 0.813363 | 2.658884e-51 | -8.615850e-47 |
| Msa0573970 | Msa0802790 | 0.817507 | 3.181691e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802790 | MtrunA17_Chr5g0410681 | 97.351 | 302 | 8 | 0 | 1 | 302 | 1 | 302 | 0.0 | 589 |
| Msa0802790 | MtrunA17_Chr3g0136661 | 47.706 | 218 | 108 | 3 | 68 | 284 | 55 | 267 | 8.92e-60 | 192 |
| Msa0802790 | MtrunA17_Chr6g0452121 | 82.927 | 41 | 7 | 0 | 118 | 158 | 3 | 43 | 1.95e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802790 | AT1G32220.1 | 66.337 | 303 | 92 | 4 | 1 | 301 | 1 | 295 | 2.85e-146 | 413 |
| Msa0802790 | AT5G10730.1 | 46.789 | 218 | 110 | 3 | 68 | 284 | 56 | 268 | 4.49e-55 | 181 |
| Msa0802790 | AT5G15910.1 | 47.222 | 216 | 109 | 3 | 70 | 284 | 43 | 254 | 4.58e-51 | 169 |
| Msa0802790 | AT5G15910.2 | 46.759 | 216 | 110 | 3 | 70 | 284 | 2 | 213 | 6.48e-51 | 168 |
Find 90 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGAGATCAATATGAATT+TGG | 0.138307 | 5_3:-17441097 | None:intergenic |
| GGAGCAGGTGTTGGTAATTT+TGG | 0.162573 | 5_3:+17439354 | Msa0802790:CDS |
| GAAGATCCTCTTATTATCTT+AGG | 0.180515 | 5_3:+17442170 | Msa0802790:three_prime_UTR |
| GATCAGGTTACTTGGATTTC+AGG | 0.214857 | 5_3:+17439972 | Msa0802790:CDS |
| TCCTGCTTCTGATCTACTTT+TGG | 0.243895 | 5_3:+17441900 | Msa0802790:CDS |
| GTGACCTGAACTAGGGAATT+TGG | 0.262436 | 5_3:-17441199 | None:intergenic |
| TTAAGACCAGGCTTCATATA+TGG | 0.287107 | 5_3:+17441772 | Msa0802790:CDS |
| GTCTCAACCCTCGGAGGTTT+TGG | 0.292716 | 5_3:+17440412 | Msa0802790:CDS |
| GAAGCAGGAAGTGCGCTTAA+TGG | 0.325078 | 5_3:-17441886 | None:intergenic |
| AGATTCCCTTGGATTTAGTT+GGG | 0.330713 | 5_3:+17441818 | Msa0802790:CDS |
| AAGATCCTCTTATTATCTTA+GGG | 0.345350 | 5_3:+17442171 | Msa0802790:three_prime_UTR |
| CATGGATAGATCAGGTTACT+TGG | 0.349750 | 5_3:+17439964 | Msa0802790:CDS |
| GTAAATGCTGCAAAGGAATA+TGG | 0.364198 | 5_3:+17440484 | Msa0802790:CDS |
| GTTACAGATGATGACTTCTT+TGG | 0.364428 | 5_3:+17441970 | Msa0802790:CDS |
| CTATCCAAATTCCCTAGTTC+AGG | 0.367351 | 5_3:+17441195 | Msa0802790:CDS |
| AACTGGGACGAAGTACTTCC+TGG | 0.372764 | 5_3:+17440376 | Msa0802790:CDS |
| GAGATTCCCTTGGATTTAGT+TGG | 0.373207 | 5_3:+17441817 | Msa0802790:CDS |
| TAATATGTAGATTGTAGTCT+TGG | 0.384812 | 5_3:+17439738 | Msa0802790:intron |
| TTGGGAGGCAATGGGTTTGT+TGG | 0.385926 | 5_3:+17439757 | Msa0802790:CDS |
| ACTGAGATCAATATGAATTT+GGG | 0.389375 | 5_3:-17441096 | None:intergenic |
| GCTTATGACTTCTATGCCCT+TGG | 0.419174 | 5_3:-17439806 | None:intergenic |
| CTTTCATCGGGGTACTTCAC+AGG | 0.421460 | 5_3:+17441147 | Msa0802790:CDS |
| CTATTTGCAATTGCAGACTT+TGG | 0.426512 | 5_3:-17442075 | None:intergenic |
| TTAAGCTCAACTCAACAAAA+TGG | 0.427738 | 5_3:+17438395 | Msa0802790:exon |
| TAGAAGTCATAAGCTTAAAC+AGG | 0.429364 | 5_3:+17439815 | Msa0802790:CDS |
| TAAGACCAGGCTTCATATAT+GGG | 0.441094 | 5_3:+17441773 | Msa0802790:CDS |
| GATCAAGGAAGCTGCTGATA+AGG | 0.445846 | 5_3:+17442011 | Msa0802790:CDS |
| TGTAACTAATAACACTTGTA+TGG | 0.448721 | 5_3:-17442254 | None:intergenic |
| GCAGTTAGCTGCAGTTATGC+AGG | 0.452311 | 5_3:+17439333 | Msa0802790:CDS |
| CTCAGATTCATGGATAGATC+AGG | 0.452914 | 5_3:+17439956 | Msa0802790:CDS |
| ATTGTAGTCTTGGGAGGCAA+TGG | 0.455853 | 5_3:+17439748 | Msa0802790:CDS |
| GTCCTGCTTACTCAGATTCA+TGG | 0.463208 | 5_3:+17439946 | Msa0802790:CDS |
| TGTTCCCCTAAGATAATAAG+AGG | 0.468667 | 5_3:-17442176 | None:intergenic |
| AATCCACGTACATGTCTGAT+AGG | 0.476979 | 5_3:+17442043 | Msa0802790:exon |
| AATATGTAGATTGTAGTCTT+GGG | 0.479908 | 5_3:+17439739 | Msa0802790:intron |
| AGCTGCAGTTATGCAGGAGC+AGG | 0.483868 | 5_3:+17439339 | Msa0802790:CDS |
| GCAATTGCAAATAGTACAAA+GGG | 0.487351 | 5_3:+17442084 | Msa0802790:three_prime_UTR |
| ATCAGCCACAACATCTATAG+TGG | 0.490070 | 5_3:-17439388 | None:intergenic |
| GAGACTACTGCAGTAGCTCC+AGG | 0.492058 | 5_3:-17440394 | None:intergenic |
| ATAGAATAGTGACCTGAACT+AGG | 0.499011 | 5_3:-17441207 | None:intergenic |
| CAGTGTTGATGATGTTGCAT+TGG | 0.500479 | 5_3:+17441933 | Msa0802790:CDS |
| AGGAAGCTGCTGATAAGGTA+AGG | 0.501695 | 5_3:+17442016 | Msa0802790:CDS |
| TTGTAGTCTTGGGAGGCAAT+GGG | 0.505552 | 5_3:+17439749 | Msa0802790:CDS |
| ATGAGACGAGGAGAAACAGC+AGG | 0.508541 | 5_3:-17438435 | None:intergenic |
| GGCTGATGTTATAAGCGAAA+AGG | 0.514531 | 5_3:+17439404 | Msa0802790:CDS |
| GTTGCATTGGCAGTTATCAA+TGG | 0.527638 | 5_3:+17441946 | Msa0802790:CDS |
| TTAGGGGAACAATGATTGCT+AGG | 0.529890 | 5_3:+17442188 | Msa0802790:three_prime_UTR |
| GAACAAATGAGAAAGATTAA+CGG | 0.530717 | 5_3:+17440442 | Msa0802790:CDS |
| ATCCATGAATCTGAGTAAGC+AGG | 0.531810 | 5_3:-17439948 | None:intergenic |
| GGGTCGTTTGAGAGAGAAAA+CGG | 0.535571 | 5_3:-17438463 | None:intergenic |
| GATTCCCTTGGATTTAGTTG+GGG | 0.537599 | 5_3:+17441819 | Msa0802790:CDS |
| GCCAAAAGTAGATCAGAAGC+AGG | 0.539884 | 5_3:-17441901 | None:intergenic |
| ATGCAAGGCAGCAGTATCCA+AGG | 0.543594 | 5_3:+17439789 | Msa0802790:CDS |
| TCAGGTATTGTCTTAAGACC+AGG | 0.551242 | 5_3:+17441760 | Msa0802790:intron |
| TGCAATTGCAAATAGTACAA+AGG | 0.552999 | 5_3:+17442083 | Msa0802790:three_prime_UTR |
| TAGGGGAACAATGATTGCTA+GGG | 0.553984 | 5_3:+17442189 | Msa0802790:three_prime_UTR |
| AAAGAGAAAAGCAGAATCTG+AGG | 0.554082 | 5_3:+17441170 | Msa0802790:CDS |
| GGGCTCCCCAACTAAATCCA+AGG | 0.564003 | 5_3:-17441824 | None:intergenic |
| GCAACATCATCAACACTGAC+AGG | 0.569664 | 5_3:-17441928 | None:intergenic |
| TATGGGAAAAGAAGAGTGGA+TGG | 0.584509 | 5_3:+17441790 | Msa0802790:CDS |
| GGTAGGTGGAGTGTGAGTGA+AGG | 0.586620 | 5_3:-17438484 | None:intergenic |
| GTAGGTGGAGTGTGAGTGAA+GGG | 0.586862 | 5_3:-17438483 | None:intergenic |
| TGTTGGTTCTGCGATATGCA+AGG | 0.592323 | 5_3:+17439774 | Msa0802790:CDS |
| AGTTATGCAGGAGCAGGTGT+TGG | 0.603055 | 5_3:+17439345 | Msa0802790:CDS |
| GGCTCCCCAACTAAATCCAA+GGG | 0.605980 | 5_3:-17441823 | None:intergenic |
| TAGAATAGTGACCTGAACTA+GGG | 0.608853 | 5_3:-17441206 | None:intergenic |
| CTCGCTACCAAAACCTCCGA+GGG | 0.612537 | 5_3:-17440419 | None:intergenic |
| TAACGGCGAGGCTAATGTTG+TGG | 0.613394 | 5_3:+17440459 | Msa0802790:CDS |
| CATATATGGGAAAAGAAGAG+TGG | 0.616736 | 5_3:+17441786 | Msa0802790:CDS |
| ATGTAGATTGTAGTCTTGGG+AGG | 0.624281 | 5_3:+17439742 | Msa0802790:intron |
| TTCAGAACATAACATATGAA+CGG | 0.626563 | 5_3:-17442299 | None:intergenic |
| ACTGCAGTAGTCTCAACCCT+CGG | 0.629761 | 5_3:+17440403 | Msa0802790:CDS |
| GGAAGCTGCTGATAAGGTAA+GGG | 0.634099 | 5_3:+17442017 | Msa0802790:CDS |
| AGATCCTCTTATTATCTTAG+GGG | 0.636612 | 5_3:+17442172 | Msa0802790:three_prime_UTR |
| GACGTCCACTATAGATGTTG+TGG | 0.643876 | 5_3:+17439383 | Msa0802790:CDS |
| CCTCGCTACCAAAACCTCCG+AGG | 0.646053 | 5_3:-17440420 | None:intergenic |
| TGTGGCTGTAAATGCTGCAA+AGG | 0.647873 | 5_3:+17440477 | Msa0802790:CDS |
| AGGGGAACAATGATTGCTAG+GGG | 0.656251 | 5_3:+17442190 | Msa0802790:three_prime_UTR |
| TGCAAGGCAGCAGTATCCAA+GGG | 0.660059 | 5_3:+17439790 | Msa0802790:CDS |
| CGTTTGAGAGAGAAAACGGT+GGG | 0.661357 | 5_3:-17438459 | None:intergenic |
| ACATCATCAACACTGACAGG+TGG | 0.667644 | 5_3:-17441925 | None:intergenic |
| AGCGCTTAATCATCTTCACT+AGG | 0.675827 | 5_3:+17438365 | Msa0802790:five_prime_UTR |
| AAAACGGTGGGAATGAGACG+AGG | 0.678492 | 5_3:-17438447 | None:intergenic |
| TTACCTATCAGACATGTACG+TGG | 0.679743 | 5_3:-17442046 | None:intergenic |
| TGAGACGAGGAGAAACAGCA+GGG | 0.692443 | 5_3:-17438434 | None:intergenic |
| AATGAGAAAGATTAACGGCG+AGG | 0.694239 | 5_3:+17440447 | Msa0802790:CDS |
| AATAAACTAAAGATTCAACA+AGG | 0.715150 | 5_3:-17442133 | None:intergenic |
| GGGGAACAATGATTGCTAGG+GGG | 0.720654 | 5_3:+17442191 | Msa0802790:three_prime_UTR |
| GCAGTAGTCTCAACCCTCGG+AGG | 0.734128 | 5_3:+17440406 | Msa0802790:CDS |
| TCGTTTGAGAGAGAAAACGG+TGG | 0.746736 | 5_3:-17438460 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTATTTTTTTCATTTTT+TGG | + | chr5_3:17438771-17438790 | Msa0802790:intron | 10.0% |
| !!! | ATGAAAAGTATAAAAAAAAT+GGG | - | chr5_3:17439451-17439470 | None:intergenic | 10.0% |
| !!! | AATGAAAAGTATAAAAAAAA+TGG | - | chr5_3:17439452-17439471 | None:intergenic | 10.0% |
| !!! | TTTTTATACTTTTCATTTTT+AGG | + | chr5_3:17439455-17439474 | Msa0802790:intron | 10.0% |
| !! | TTTAAATTTATTTATGGAAT+CGG | + | chr5_3:17441011-17441030 | Msa0802790:intron | 10.0% |
| !!! | TTTTTTCATTTCTAAATTCT+GGG | + | chr5_3:17438565-17438584 | Msa0802790:intron | 15.0% |
| !!! | TTTTTTTCATTTTTTGGATT+TGG | + | chr5_3:17438777-17438796 | Msa0802790:intron | 15.0% |
| !! | AGAATGAAAATCAATTAAAA+AGG | - | chr5_3:17441711-17441730 | None:intergenic | 15.0% |
| !!! | CTTTTTTCATTTCTAAATTC+TGG | + | chr5_3:17438564-17438583 | Msa0802790:intron | 20.0% |
| !!! | AAAATTCAACTTTTCCATTA+TGG | + | chr5_3:17438873-17438892 | Msa0802790:intron | 20.0% |
| !!! | ACTTTTTGCAAACATATTTT+TGG | + | chr5_3:17439479-17439498 | Msa0802790:intron | 20.0% |
| !! | AACATAGTGAATTAATTGAT+AGG | + | chr5_3:17439611-17439630 | Msa0802790:intron | 20.0% |
| !!! | AACTGAAATTTTGTTTTAAC+AGG | + | chr5_3:17439916-17439935 | Msa0802790:intron | 20.0% |
| !!! | TATCTTACTTTTTTTGTACT+CGG | - | chr5_3:17440163-17440182 | None:intergenic | 20.0% |
| !!! | AGATGTTTTTTATGTAAACT+GGG | + | chr5_3:17440360-17440379 | Msa0802790:CDS | 20.0% |
| !! | ATAATATAGTCAAACATGAA+AGG | - | chr5_3:17440569-17440588 | None:intergenic | 20.0% |
| !!! | AAATTTTAAGTCTTGCTTTA+TGG | - | chr5_3:17440621-17440640 | None:intergenic | 20.0% |
| !! | ATAAGTACTTATCATATAAG+TGG | - | chr5_3:17440818-17440837 | None:intergenic | 20.0% |
| !! | ACTAAAATGTAAAGAAACAT+TGG | - | chr5_3:17440898-17440917 | None:intergenic | 20.0% |
| !!! | ATGTTTCTTTACATTTTAGT+TGG | + | chr5_3:17440898-17440917 | Msa0802790:intron | 20.0% |
| !!! | TGGTGCTTTAAATTTATTTA+TGG | + | chr5_3:17441005-17441024 | Msa0802790:intron | 20.0% |
| !!! | TTTAGTTTTAAGATCATGAA+AGG | - | chr5_3:17441234-17441253 | None:intergenic | 20.0% |
| !!! | TTTGCTGAAATGATTATTTT+TGG | + | chr5_3:17441325-17441344 | Msa0802790:intron | 20.0% |
| !! | CATATGAATAAATTATAAGC+TGG | - | chr5_3:17441566-17441585 | None:intergenic | 20.0% |
| !!! | TTTATCTCTTGTTATAGAAA+TGG | + | chr5_3:17441604-17441623 | Msa0802790:intron | 20.0% |
| !! | AATAAACTAAAGATTCAACA+AGG | - | chr5_3:17442136-17442155 | None:intergenic | 20.0% |
| ! | CCTAAGTAAAACAAATTTCA+TGG | - | chr5_3:17438662-17438681 | None:intergenic | 25.0% |
| !!! | CCATGAAATTTGTTTTACTT+AGG | + | chr5_3:17438659-17438678 | Msa0802790:intron | 25.0% |
| !!! | ATTTCAGTTTTAGTGAGTAA+TGG | + | chr5_3:17438727-17438746 | Msa0802790:intron | 25.0% |
| ! | GTTAACATAAACAACCATAA+TGG | - | chr5_3:17438890-17438909 | None:intergenic | 25.0% |
| ! | TTCACATTCAACACATAATT+TGG | - | chr5_3:17438912-17438931 | None:intergenic | 25.0% |
| ! | CTATAACAATAGAGAAAGTA+TGG | + | chr5_3:17439011-17439030 | Msa0802790:intron | 25.0% |
| !! | CATTGTTTTCATAAACTATC+CGG | + | chr5_3:17439059-17439078 | Msa0802790:intron | 25.0% |
| !! | ATTGTTTTCATAAACTATCC+GGG | + | chr5_3:17439060-17439079 | Msa0802790:intron | 25.0% |
| ! | TAATATGTAGATTGTAGTCT+TGG | + | chr5_3:17439738-17439757 | Msa0802790:intron | 25.0% |
| ! | AATATGTAGATTGTAGTCTT+GGG | + | chr5_3:17439739-17439758 | Msa0802790:intron | 25.0% |
| ! | TGAATACACAAAAACAAAAG+AGG | - | chr5_3:17439897-17439916 | None:intergenic | 25.0% |
| !!! | AAATTTTGTTTTAACAGGTC+AGG | + | chr5_3:17439921-17439940 | Msa0802790:intron | 25.0% |
| !! | CTAGACATGTTTAGTTTATT+AGG | - | chr5_3:17440111-17440130 | None:intergenic | 25.0% |
| ! | CTAATAAACTAAACATGTCT+AGG | + | chr5_3:17440109-17440128 | Msa0802790:intron | 25.0% |
| ! | CAATAGTAGAAAACAAACTT+TGG | - | chr5_3:17440199-17440218 | None:intergenic | 25.0% |
| !!! | CAAAGTTTGTTTTCTACTAT+TGG | + | chr5_3:17440197-17440216 | Msa0802790:intron | 25.0% |
| !!! | ATCTCAGTAATCTTTTTTTC+TGG | + | chr5_3:17440305-17440324 | Msa0802790:intron | 25.0% |
| !!! | GAGATGTTTTTTATGTAAAC+TGG | + | chr5_3:17440359-17440378 | Msa0802790:CDS | 25.0% |
| ! | GAACAAATGAGAAAGATTAA+CGG | + | chr5_3:17440442-17440461 | Msa0802790:CDS | 25.0% |
| ! | AAATGTAAAGAAACATTGGA+AGG | - | chr5_3:17440894-17440913 | None:intergenic | 25.0% |
| ! | TATATGAAGTACGTTATGTT+TGG | + | chr5_3:17440967-17440986 | Msa0802790:intron | 25.0% |
| ! | ATATGAAGTACGTTATGTTT+GGG | + | chr5_3:17440968-17440987 | Msa0802790:intron | 25.0% |
| ! | ACTGAGATCAATATGAATTT+GGG | - | chr5_3:17441099-17441118 | None:intergenic | 25.0% |
| ! | AACTGAGATCAATATGAATT+TGG | - | chr5_3:17441100-17441119 | None:intergenic | 25.0% |
| !! | AGATGAATATCATGCTTTTA+CGG | + | chr5_3:17441396-17441415 | Msa0802790:intron | 25.0% |
| ! | TCAAATAAGTTAATGCAAAC+AGG | - | chr5_3:17441422-17441441 | None:intergenic | 25.0% |
| ! | TAATTAAGCACTTATCACAT+AGG | - | chr5_3:17441666-17441685 | None:intergenic | 25.0% |
| !!! | TGATTTTAGAATTCTTTCAG+CGG | - | chr5_3:17441848-17441867 | None:intergenic | 25.0% |
| !! | TTTTACAATTGATCAGATCA+AGG | + | chr5_3:17441996-17442015 | Msa0802790:CDS | 25.0% |
| ! | AAGATCCTCTTATTATCTTA+GGG | + | chr5_3:17442171-17442190 | Msa0802790:three_prime_UTR | 25.0% |
| ! | CAGAAAAAAGATATAGACAT+CGG | - | chr5_3:17442234-17442253 | None:intergenic | 25.0% |
| ! | TGTAACTAATAACACTTGTA+TGG | - | chr5_3:17442257-17442276 | None:intergenic | 25.0% |
| TTAAGCTCAACTCAACAAAA+TGG | + | chr5_3:17438395-17438414 | Msa0802790:exon | 30.0% | |
| !!! | TGATTTTTGAAATGCAAGGT+AGG | - | chr5_3:17438504-17438523 | None:intergenic | 30.0% |
| !!! | TCTGCTATTTTTCTACTGTT+TGG | + | chr5_3:17438627-17438646 | Msa0802790:intron | 30.0% |
| CAAGTTAATTAAACGCGTAT+AGG | + | chr5_3:17438948-17438967 | Msa0802790:intron | 30.0% | |
| ! | TTGTTTTCATAAACTATCCG+GGG | + | chr5_3:17439061-17439080 | Msa0802790:intron | 30.0% |
| !! | CTTATTTCTATAAGTTTCCC+CGG | - | chr5_3:17439081-17439100 | None:intergenic | 30.0% |
| TTAGTAATCCATGGATCATA+GGG | + | chr5_3:17439524-17439543 | Msa0802790:intron | 30.0% | |
| TAGAAGTCATAAGCTTAAAC+AGG | + | chr5_3:17439815-17439834 | Msa0802790:CDS | 30.0% | |
| ! | CACAAATTTGTTTACACCAT+TGG | - | chr5_3:17440258-17440277 | None:intergenic | 30.0% |
| CAAAATAATGCTCAATGAGA+TGG | - | chr5_3:17440514-17440533 | None:intergenic | 30.0% | |
| AGGGTATGAATGAAAGTTTA+GGG | - | chr5_3:17440597-17440616 | None:intergenic | 30.0% | |
| ! | AAGGGTATGAATGAAAGTTT+AGG | - | chr5_3:17440598-17440617 | None:intergenic | 30.0% |
| TTAAGTCTTGCTTTATGGAA+GGG | - | chr5_3:17440616-17440635 | None:intergenic | 30.0% | |
| TTTAAGTCTTGCTTTATGGA+AGG | - | chr5_3:17440617-17440636 | None:intergenic | 30.0% | |
| AAGTTGAATGCTTACAGATA+TGG | + | chr5_3:17440762-17440781 | Msa0802790:intron | 30.0% | |
| !!! | TTCTTTACATTTTAGTTGGC+TGG | + | chr5_3:17440902-17440921 | Msa0802790:intron | 30.0% |
| TGTATATATACGCACAGAAA+TGG | + | chr5_3:17440927-17440946 | Msa0802790:intron | 30.0% | |
| !! | ATGTTTGGGATATTCTTTTG+CGG | + | chr5_3:17440982-17441001 | Msa0802790:intron | 30.0% |
| !! | ACCATCGTTTTTACTTTCAT+CGG | + | chr5_3:17441134-17441153 | Msa0802790:CDS | 30.0% |
| ! | ACTTATTTGAGACTATCTAC+CGG | + | chr5_3:17441432-17441451 | Msa0802790:intron | 30.0% |
| AATCTCACAAATGCTTATAC+CGG | - | chr5_3:17441454-17441473 | None:intergenic | 30.0% | |
| AGATTATATGAGAGAGCTTA+TGG | + | chr5_3:17441469-17441488 | Msa0802790:intron | 30.0% | |
| !!! | GATTTTAGAATTCTTTCAGC+GGG | - | chr5_3:17441847-17441866 | None:intergenic | 30.0% |
| TGCAATTGCAAATAGTACAA+AGG | + | chr5_3:17442083-17442102 | Msa0802790:three_prime_UTR | 30.0% | |
| GCAATTGCAAATAGTACAAA+GGG | + | chr5_3:17442084-17442103 | Msa0802790:three_prime_UTR | 30.0% | |
| GAAGATCCTCTTATTATCTT+AGG | + | chr5_3:17442170-17442189 | Msa0802790:three_prime_UTR | 30.0% | |
| AGATCCTCTTATTATCTTAG+GGG | + | chr5_3:17442172-17442191 | Msa0802790:three_prime_UTR | 30.0% | |
| !!! | TTTTTGAAATGCAAGGTAGG+TGG | - | chr5_3:17438501-17438520 | None:intergenic | 35.0% |
| !!! | CCTGTGATTTTTGAAATGCA+AGG | - | chr5_3:17438508-17438527 | None:intergenic | 35.0% |
| CCTTGCATTTCAAAAATCAC+AGG | + | chr5_3:17438505-17438524 | Msa0802790:CDS | 35.0% | |
| !! | AGTTGTGAACTTTTGAGAGA+AGG | - | chr5_3:17438546-17438565 | None:intergenic | 35.0% |
| AATAAGCTGTAAACAGCGAT+TGG | + | chr5_3:17439095-17439114 | Msa0802790:intron | 35.0% | |
| AGACTGTTTGGAAGAACTTA+CGG | - | chr5_3:17439139-17439158 | None:intergenic | 35.0% | |
| ! | TTTGCTTCCTTTTTGCAATG+TGG | + | chr5_3:17439218-17439237 | Msa0802790:intron | 35.0% |
| ! | TTGCTTCCTTTTTGCAATGT+GGG | + | chr5_3:17439219-17439238 | Msa0802790:intron | 35.0% |
| TGGTTAAATATGTCCCTTTG+TGG | + | chr5_3:17439499-17439518 | Msa0802790:intron | 35.0% | |
| TGGATTACTAACACCACAAA+GGG | - | chr5_3:17439515-17439534 | None:intergenic | 35.0% | |
| ! | ATGGATTACTAACACCACAA+AGG | - | chr5_3:17439516-17439535 | None:intergenic | 35.0% |
| ! | TTTGTGGTGTTAGTAATCCA+TGG | + | chr5_3:17439515-17439534 | Msa0802790:intron | 35.0% |
| GTTAGTAATCCATGGATCAT+AGG | + | chr5_3:17439523-17439542 | Msa0802790:intron | 35.0% | |
| ACACAAAAACAAAAGAGGCA+CGG | - | chr5_3:17439892-17439911 | None:intergenic | 35.0% | |
| ACTAAACATGTCTAGGTCTA+TGG | + | chr5_3:17440116-17440135 | Msa0802790:intron | 35.0% | |
| GTAGAAAACAAACTTTGGCA+CGG | - | chr5_3:17440194-17440213 | None:intergenic | 35.0% | |
| GGTGTAAACAAATTTGTGTG+TGG | + | chr5_3:17440260-17440279 | Msa0802790:intron | 35.0% | |
| AAAAACATCTCCTGCACATT+AGG | - | chr5_3:17440350-17440369 | None:intergenic | 35.0% | |
| GTAAATGCTGCAAAGGAATA+TGG | + | chr5_3:17440484-17440503 | Msa0802790:CDS | 35.0% | |
| !! | GTTGTTATGTGCTGTTTACA+AGG | + | chr5_3:17440648-17440667 | Msa0802790:intron | 35.0% |
| TGCTTATATAGGACAGTTGA+TGG | - | chr5_3:17440692-17440711 | None:intergenic | 35.0% | |
| ATCAACTGTCCTATATAAGC+AGG | + | chr5_3:17440691-17440710 | Msa0802790:intron | 35.0% | |
| CAAGCTATACCTGCTTATAT+AGG | - | chr5_3:17440703-17440722 | None:intergenic | 35.0% | |
| AATGCTTACAGATATGGAGA+TGG | + | chr5_3:17440768-17440787 | Msa0802790:intron | 35.0% | |
| TATCCAAACATAACCTTAGC+AGG | + | chr5_3:17440863-17440882 | Msa0802790:intron | 35.0% | |
| CAGAAATGGTTTGATGCTTA+TGG | + | chr5_3:17440941-17440960 | Msa0802790:intron | 35.0% | |
| !! | CCATCGTTTTTACTTTCATC+GGG | + | chr5_3:17441135-17441154 | Msa0802790:CDS | 35.0% |
| !! | CATCGTTTTTACTTTCATCG+GGG | + | chr5_3:17441136-17441155 | Msa0802790:CDS | 35.0% |
| AAAGAGAAAAGCAGAATCTG+AGG | + | chr5_3:17441170-17441189 | Msa0802790:CDS | 35.0% | |
| TAGAATAGTGACCTGAACTA+GGG | - | chr5_3:17441209-17441228 | None:intergenic | 35.0% | |
| ATAGAATAGTGACCTGAACT+AGG | - | chr5_3:17441210-17441229 | None:intergenic | 35.0% | |
| AGTCTGATAAACAAAGACCT+GGG | + | chr5_3:17441264-17441283 | Msa0802790:intron | 35.0% | |
| AATGACTCATTTGCAGAACA+GGG | - | chr5_3:17441307-17441326 | None:intergenic | 35.0% | |
| AAATGACTCATTTGCAGAAC+AGG | - | chr5_3:17441308-17441327 | None:intergenic | 35.0% | |
| AGTAAGCTAAAAACAGCTCA+TGG | - | chr5_3:17441513-17441532 | None:intergenic | 35.0% | |
| TGAAAAATCCCAACATCTTC+AGG | + | chr5_3:17441742-17441761 | Msa0802790:intron | 35.0% | |
| AGACAATACCTGAAGATGTT+GGG | - | chr5_3:17441753-17441772 | None:intergenic | 35.0% | |
| AAGACAATACCTGAAGATGT+TGG | - | chr5_3:17441754-17441773 | None:intergenic | 35.0% | |
| TTAAGACCAGGCTTCATATA+TGG | + | chr5_3:17441772-17441791 | Msa0802790:CDS | 35.0% | |
| TAAGACCAGGCTTCATATAT+GGG | + | chr5_3:17441773-17441792 | Msa0802790:CDS | 35.0% | |
| CATATATGGGAAAAGAAGAG+TGG | + | chr5_3:17441786-17441805 | Msa0802790:CDS | 35.0% | |
| AGATTCCCTTGGATTTAGTT+GGG | + | chr5_3:17441818-17441837 | Msa0802790:CDS | 35.0% | |
| GTTACAGATGATGACTTCTT+TGG | + | chr5_3:17441970-17441989 | Msa0802790:CDS | 35.0% | |
| CTATTTGCAATTGCAGACTT+TGG | - | chr5_3:17442078-17442097 | None:intergenic | 35.0% | |
| CAAAGGGAGTGAAAAATATG+AGG | + | chr5_3:17442100-17442119 | Msa0802790:three_prime_UTR | 35.0% | |
| TGTTCCCCTAAGATAATAAG+AGG | - | chr5_3:17442179-17442198 | None:intergenic | 35.0% | |
| AGCGCTTAATCATCTTCACT+AGG | + | chr5_3:17438365-17438384 | Msa0802790:five_prime_UTR | 40.0% | |
| AAGACACTTGTGAGACTGTT+TGG | - | chr5_3:17439151-17439170 | None:intergenic | 40.0% | |
| AACTTAGAGCTTGGTTGGAT+TGG | - | chr5_3:17439199-17439218 | None:intergenic | 40.0% | |
| AGCAAAACTTAGAGCTTGGT+TGG | - | chr5_3:17439204-17439223 | None:intergenic | 40.0% | |
| AGGAAGCAAAACTTAGAGCT+TGG | - | chr5_3:17439208-17439227 | None:intergenic | 40.0% | |
| TCAAGACCCACATTGCAAAA+AGG | - | chr5_3:17439228-17439247 | None:intergenic | 40.0% | |
| ATCAGCCACAACATCTATAG+TGG | - | chr5_3:17439391-17439410 | None:intergenic | 40.0% | |
| GGCTGATGTTATAAGCGAAA+AGG | + | chr5_3:17439404-17439423 | Msa0802790:CDS | 40.0% | |
| ! | ATGTAGATTGTAGTCTTGGG+AGG | + | chr5_3:17439742-17439761 | Msa0802790:intron | 40.0% |
| ATCCATGAATCTGAGTAAGC+AGG | - | chr5_3:17439951-17439970 | None:intergenic | 40.0% | |
| CTCAGATTCATGGATAGATC+AGG | + | chr5_3:17439956-17439975 | Msa0802790:CDS | 40.0% | |
| CATGGATAGATCAGGTTACT+TGG | + | chr5_3:17439964-17439983 | Msa0802790:CDS | 40.0% | |
| GATCAGGTTACTTGGATTTC+AGG | + | chr5_3:17439972-17439991 | Msa0802790:CDS | 40.0% | |
| TGGATCAAGTGAGATAGGAT+GGG | - | chr5_3:17440238-17440257 | None:intergenic | 40.0% | |
| TTGGATCAAGTGAGATAGGA+TGG | - | chr5_3:17440239-17440258 | None:intergenic | 40.0% | |
| TCCTATCTCACTTGATCCAA+TGG | + | chr5_3:17440239-17440258 | Msa0802790:intron | 40.0% | |
| ACCATTGGATCAAGTGAGAT+AGG | - | chr5_3:17440243-17440262 | None:intergenic | 40.0% | |
| AATGAGAAAGATTAACGGCG+AGG | + | chr5_3:17440447-17440466 | Msa0802790:CDS | 40.0% | |
| CAACCTGCTAAGGTTATGTT+TGG | - | chr5_3:17440869-17440888 | None:intergenic | 40.0% | |
| !! | TTTGGGATATTCTTTTGCGG+TGG | + | chr5_3:17440985-17441004 | Msa0802790:intron | 40.0% |
| TGAATTTGGGAATTCCTGCA+AGG | - | chr5_3:17441086-17441105 | None:intergenic | 40.0% | |
| CCCGATGAAAGTAAAAACGA+TGG | - | chr5_3:17441138-17441157 | None:intergenic | 40.0% | |
| CTATCCAAATTCCCTAGTTC+AGG | + | chr5_3:17441195-17441214 | Msa0802790:CDS | 40.0% | |
| GAGTCTGATAAACAAAGACC+TGG | + | chr5_3:17441263-17441282 | Msa0802790:intron | 40.0% | |
| GTCTGATAAACAAAGACCTG+GGG | + | chr5_3:17441265-17441284 | Msa0802790:intron | 40.0% | |
| TATATGGAGTTTACAACCCC+AGG | - | chr5_3:17441284-17441303 | None:intergenic | 40.0% | |
| CATTTGCAGAACAGGGTATA+TGG | - | chr5_3:17441300-17441319 | None:intergenic | 40.0% | |
| AGTAGAGCTAAAGCTGTATG+AGG | + | chr5_3:17441351-17441370 | Msa0802790:intron | 40.0% | |
| AAGCTATCTTGGAGAGCTTA+TGG | - | chr5_3:17441537-17441556 | None:intergenic | 40.0% | |
| ! | GCTGGTTTCATAAGCTATCT+TGG | - | chr5_3:17441548-17441567 | None:intergenic | 40.0% |
| ! | TCAGGTATTGTCTTAAGACC+AGG | + | chr5_3:17441760-17441779 | Msa0802790:intron | 40.0% |
| ! | CTTTTCCCATATATGAAGCC+TGG | - | chr5_3:17441781-17441800 | None:intergenic | 40.0% |
| TATGGGAAAAGAAGAGTGGA+TGG | + | chr5_3:17441790-17441809 | Msa0802790:CDS | 40.0% | |
| GAGATTCCCTTGGATTTAGT+TGG | + | chr5_3:17441817-17441836 | Msa0802790:CDS | 40.0% | |
| GATTCCCTTGGATTTAGTTG+GGG | + | chr5_3:17441819-17441838 | Msa0802790:CDS | 40.0% | |
| ! | TCCTGCTTCTGATCTACTTT+TGG | + | chr5_3:17441900-17441919 | Msa0802790:CDS | 40.0% |
| !! | CAGTGTTGATGATGTTGCAT+TGG | + | chr5_3:17441933-17441952 | Msa0802790:CDS | 40.0% |
| ! | GTTGCATTGGCAGTTATCAA+TGG | + | chr5_3:17441946-17441965 | Msa0802790:CDS | 40.0% |
| AATCCACGTACATGTCTGAT+AGG | + | chr5_3:17442043-17442062 | Msa0802790:exon | 40.0% | |
| TTACCTATCAGACATGTACG+TGG | - | chr5_3:17442049-17442068 | None:intergenic | 40.0% | |
| TTAGGGGAACAATGATTGCT+AGG | + | chr5_3:17442188-17442207 | Msa0802790:three_prime_UTR | 40.0% | |
| TAGGGGAACAATGATTGCTA+GGG | + | chr5_3:17442189-17442208 | Msa0802790:three_prime_UTR | 40.0% | |
| CGTTTGAGAGAGAAAACGGT+GGG | - | chr5_3:17438462-17438481 | None:intergenic | 45.0% | |
| TCGTTTGAGAGAGAAAACGG+TGG | - | chr5_3:17438463-17438482 | None:intergenic | 45.0% | |
| GGGTCGTTTGAGAGAGAAAA+CGG | - | chr5_3:17438466-17438485 | None:intergenic | 45.0% | |
| !!! | GGAGCAGGTGTTGGTAATTT+TGG | + | chr5_3:17439354-17439373 | Msa0802790:CDS | 45.0% |
| GACGTCCACTATAGATGTTG+TGG | + | chr5_3:17439383-17439402 | Msa0802790:CDS | 45.0% | |
| GTAATCCATGGATCATAGGG+AGG | + | chr5_3:17439527-17439546 | Msa0802790:intron | 45.0% | |
| ATCTTCCTCCCTATGATCCA+TGG | - | chr5_3:17439535-17439554 | None:intergenic | 45.0% | |
| CCAGTCGCATGAGTATCAAT+AGG | - | chr5_3:17439582-17439601 | None:intergenic | 45.0% | |
| CCTATTGATACTCATGCGAC+TGG | + | chr5_3:17439579-17439598 | Msa0802790:intron | 45.0% | |
| ! | ATTGTAGTCTTGGGAGGCAA+TGG | + | chr5_3:17439748-17439767 | Msa0802790:CDS | 45.0% |
| ! | TTGTAGTCTTGGGAGGCAAT+GGG | + | chr5_3:17439749-17439768 | Msa0802790:CDS | 45.0% |
| !! | TGTTGGTTCTGCGATATGCA+AGG | + | chr5_3:17439774-17439793 | Msa0802790:CDS | 45.0% |
| GCTTATGACTTCTATGCCCT+TGG | - | chr5_3:17439809-17439828 | None:intergenic | 45.0% | |
| GCACGGAAGAGACAAATAGA+TGG | - | chr5_3:17439875-17439894 | None:intergenic | 45.0% | |
| GTCCTGCTTACTCAGATTCA+TGG | + | chr5_3:17439946-17439965 | Msa0802790:CDS | 45.0% | |
| CAAGTGAGATAGGATGGGAT+GGG | - | chr5_3:17440233-17440252 | None:intergenic | 45.0% | |
| TCAAGTGAGATAGGATGGGA+TGG | - | chr5_3:17440234-17440253 | None:intergenic | 45.0% | |
| CAGTGTTATGCCTAATGTGC+AGG | + | chr5_3:17440337-17440356 | Msa0802790:intron | 45.0% | |
| TGTGGCTGTAAATGCTGCAA+AGG | + | chr5_3:17440477-17440496 | Msa0802790:CDS | 45.0% | |
| TGAGACGTGAATAGCACATC+TGG | - | chr5_3:17441047-17441066 | None:intergenic | 45.0% | |
| CCTGCAAGGTAAAAGAACAG+TGG | - | chr5_3:17441072-17441091 | None:intergenic | 45.0% | |
| ! | CCACTGTTCTTTTACCTTGC+AGG | + | chr5_3:17441069-17441088 | Msa0802790:intron | 45.0% |
| GTGACCTGAACTAGGGAATT+TGG | - | chr5_3:17441202-17441221 | None:intergenic | 45.0% | |
| !!! | GGATGGTTTTGAGATTCCCT+TGG | + | chr5_3:17441807-17441826 | Msa0802790:CDS | 45.0% |
| GCCAAAAGTAGATCAGAAGC+AGG | - | chr5_3:17441904-17441923 | None:intergenic | 45.0% | |
| ACATCATCAACACTGACAGG+TGG | - | chr5_3:17441928-17441947 | None:intergenic | 45.0% | |
| GCAACATCATCAACACTGAC+AGG | - | chr5_3:17441931-17441950 | None:intergenic | 45.0% | |
| GATCAAGGAAGCTGCTGATA+AGG | + | chr5_3:17442011-17442030 | Msa0802790:CDS | 45.0% | |
| AGGAAGCTGCTGATAAGGTA+AGG | + | chr5_3:17442016-17442035 | Msa0802790:CDS | 45.0% | |
| GGAAGCTGCTGATAAGGTAA+GGG | + | chr5_3:17442017-17442036 | Msa0802790:CDS | 45.0% | |
| AGGGGAACAATGATTGCTAG+GGG | + | chr5_3:17442190-17442209 | Msa0802790:three_prime_UTR | 45.0% | |
| TGAGACGAGGAGAAACAGCA+GGG | - | chr5_3:17438437-17438456 | None:intergenic | 50.0% | |
| ATGAGACGAGGAGAAACAGC+AGG | - | chr5_3:17438438-17438457 | None:intergenic | 50.0% | |
| AAAACGGTGGGAATGAGACG+AGG | - | chr5_3:17438450-17438469 | None:intergenic | 50.0% | |
| GTAGGTGGAGTGTGAGTGAA+GGG | - | chr5_3:17438486-17438505 | None:intergenic | 50.0% | |
| GCAGCTAACTGCAAATCTGC+AGG | - | chr5_3:17439325-17439344 | None:intergenic | 50.0% | |
| GCAGTTAGCTGCAGTTATGC+AGG | + | chr5_3:17439333-17439352 | Msa0802790:CDS | 50.0% | |
| AGTTATGCAGGAGCAGGTGT+TGG | + | chr5_3:17439345-17439364 | Msa0802790:CDS | 50.0% | |
| ! | TTGGGAGGCAATGGGTTTGT+TGG | + | chr5_3:17439757-17439776 | Msa0802790:CDS | 50.0% |
| ATGCAAGGCAGCAGTATCCA+AGG | + | chr5_3:17439789-17439808 | Msa0802790:CDS | 50.0% | |
| TGCAAGGCAGCAGTATCCAA+GGG | + | chr5_3:17439790-17439809 | Msa0802790:CDS | 50.0% | |
| ! | AACTGGGACGAAGTACTTCC+TGG | + | chr5_3:17440376-17440395 | Msa0802790:CDS | 50.0% |
| ACTGCAGTAGTCTCAACCCT+CGG | + | chr5_3:17440403-17440422 | Msa0802790:CDS | 50.0% | |
| TAACGGCGAGGCTAATGTTG+TGG | + | chr5_3:17440459-17440478 | Msa0802790:CDS | 50.0% | |
| ! | TTGGAAGGTGCAACCTGCTA+AGG | - | chr5_3:17440879-17440898 | None:intergenic | 50.0% |
| ! | CTTTCATCGGGGTACTTCAC+AGG | + | chr5_3:17441147-17441166 | Msa0802790:CDS | 50.0% |
| CTGTATGAGGATCCAGCAAC+AGG | + | chr5_3:17441364-17441383 | Msa0802790:intron | 50.0% | |
| TCTTCCACAACTCCTGTTGC+TGG | - | chr5_3:17441379-17441398 | None:intergenic | 50.0% | |
| GGCTCCCCAACTAAATCCAA+GGG | - | chr5_3:17441826-17441845 | None:intergenic | 50.0% | |
| ! | GAAGCAGGAAGTGCGCTTAA+TGG | - | chr5_3:17441889-17441908 | None:intergenic | 50.0% |
| GGGGAACAATGATTGCTAGG+GGG | + | chr5_3:17442191-17442210 | Msa0802790:three_prime_UTR | 50.0% | |
| GGTAGGTGGAGTGTGAGTGA+AGG | - | chr5_3:17438487-17438506 | None:intergenic | 55.0% | |
| AGCTGCAGTTATGCAGGAGC+AGG | + | chr5_3:17439339-17439358 | Msa0802790:CDS | 55.0% | |
| GAGACTACTGCAGTAGCTCC+AGG | - | chr5_3:17440397-17440416 | None:intergenic | 55.0% | |
| ! | GTCTCAACCCTCGGAGGTTT+TGG | + | chr5_3:17440412-17440431 | Msa0802790:CDS | 55.0% |
| CTCGCTACCAAAACCTCCGA+GGG | - | chr5_3:17440422-17440441 | None:intergenic | 55.0% | |
| GGATCCAGCAACAGGAGTTG+TGG | + | chr5_3:17441372-17441391 | Msa0802790:intron | 55.0% | |
| GGGCTCCCCAACTAAATCCA+AGG | - | chr5_3:17441827-17441846 | None:intergenic | 55.0% | |
| GCAGTAGTCTCAACCCTCGG+AGG | + | chr5_3:17440406-17440425 | Msa0802790:CDS | 60.0% | |
| CCTCGCTACCAAAACCTCCG+AGG | - | chr5_3:17440423-17440442 | None:intergenic | 60.0% | |
| !!! | CCTCGGAGGTTTTGGTAGCG+AGG | + | chr5_3:17440420-17440439 | Msa0802790:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 17438335 | 17442320 | 17438335 | ID=Msa0802790;Name=Msa0802790 |
| chr5_3 | mRNA | 17438335 | 17442320 | 17438335 | ID=Msa0802790-mRNA-1;Parent=Msa0802790;Name=Msa0802790-mRNA-1;_AED=0.06;_eAED=0.06;_QI=79|1|1|1|1|1|7|276|302 |
| chr5_3 | exon | 17438335 | 17438526 | 17438335 | ID=Msa0802790-mRNA-1:exon:7235;Parent=Msa0802790-mRNA-1 |
| chr5_3 | exon | 17439329 | 17439425 | 17439329 | ID=Msa0802790-mRNA-1:exon:7236;Parent=Msa0802790-mRNA-1 |
| chr5_3 | exon | 17439748 | 17439836 | 17439748 | ID=Msa0802790-mRNA-1:exon:7237;Parent=Msa0802790-mRNA-1 |
| chr5_3 | exon | 17439938 | 17439993 | 17439938 | ID=Msa0802790-mRNA-1:exon:7238;Parent=Msa0802790-mRNA-1 |
| chr5_3 | exon | 17440359 | 17440505 | 17440359 | ID=Msa0802790-mRNA-1:exon:7239;Parent=Msa0802790-mRNA-1 |
| chr5_3 | exon | 17441091 | 17441216 | 17441091 | ID=Msa0802790-mRNA-1:exon:7240;Parent=Msa0802790-mRNA-1 |
| chr5_3 | exon | 17441764 | 17442320 | 17441764 | ID=Msa0802790-mRNA-1:exon:7241;Parent=Msa0802790-mRNA-1 |
| chr5_3 | five_prime_UTR | 17438335 | 17438413 | 17438335 | ID=Msa0802790-mRNA-1:five_prime_utr;Parent=Msa0802790-mRNA-1 |
| chr5_3 | CDS | 17438414 | 17438526 | 17438414 | ID=Msa0802790-mRNA-1:cds;Parent=Msa0802790-mRNA-1 |
| chr5_3 | CDS | 17439329 | 17439425 | 17439329 | ID=Msa0802790-mRNA-1:cds;Parent=Msa0802790-mRNA-1 |
| chr5_3 | CDS | 17439748 | 17439836 | 17439748 | ID=Msa0802790-mRNA-1:cds;Parent=Msa0802790-mRNA-1 |
| chr5_3 | CDS | 17439938 | 17439993 | 17439938 | ID=Msa0802790-mRNA-1:cds;Parent=Msa0802790-mRNA-1 |
| chr5_3 | CDS | 17440359 | 17440505 | 17440359 | ID=Msa0802790-mRNA-1:cds;Parent=Msa0802790-mRNA-1 |
| chr5_3 | CDS | 17441091 | 17441216 | 17441091 | ID=Msa0802790-mRNA-1:cds;Parent=Msa0802790-mRNA-1 |
| chr5_3 | CDS | 17441764 | 17442044 | 17441764 | ID=Msa0802790-mRNA-1:cds;Parent=Msa0802790-mRNA-1 |
| chr5_3 | three_prime_UTR | 17442045 | 17442320 | 17442045 | ID=Msa0802790-mRNA-1:three_prime_utr;Parent=Msa0802790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
