Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508800 | XP_003600880.1 | 99.074 | 216 | 2 | 0 | 1 | 216 | 1 | 216 | 5.57e-149 | 423 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508800 | G7JB79 | 99.074 | 216 | 2 | 0 | 1 | 216 | 1 | 216 | 2.66e-149 | 423 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0416560 | Msa0508800 | 0.819257 | 1.277379e-52 | -8.615850e-47 |
| Msa0438070 | Msa0508800 | 0.800138 | 1.658748e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508800 | MtrunA17_Chr3g0113341 | 99.074 | 216 | 2 | 0 | 1 | 216 | 1 | 216 | 5.13e-153 | 423 |
| Msa0508800 | MtrunA17_Chr2g0332311 | 42.289 | 201 | 95 | 4 | 24 | 208 | 9 | 204 | 1.43e-37 | 137 |
| Msa0508800 | MtrunA17_Chr4g0003831 | 40.394 | 203 | 99 | 4 | 24 | 209 | 10 | 207 | 8.91e-37 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508800 | AT2G40095.1 | 61.574 | 216 | 63 | 6 | 14 | 216 | 1 | 209 | 2.20e-83 | 247 |
| Msa0508800 | AT2G40095.2 | 61.574 | 216 | 63 | 6 | 14 | 216 | 1 | 209 | 2.20e-83 | 247 |
| Msa0508800 | AT3G55880.2 | 61.009 | 218 | 67 | 5 | 14 | 216 | 1 | 215 | 2.03e-77 | 232 |
| Msa0508800 | AT3G55880.3 | 61.009 | 218 | 67 | 5 | 14 | 216 | 1 | 215 | 2.03e-77 | 232 |
| Msa0508800 | AT2G40095.3 | 60.714 | 196 | 58 | 5 | 14 | 197 | 1 | 189 | 5.30e-72 | 218 |
| Msa0508800 | AT3G55880.1 | 60.000 | 200 | 62 | 5 | 14 | 198 | 1 | 197 | 1.15e-65 | 201 |
| Msa0508800 | AT3G55880.4 | 60.000 | 200 | 62 | 5 | 14 | 198 | 1 | 197 | 1.15e-65 | 201 |
| Msa0508800 | AT1G80280.1 | 42.233 | 206 | 94 | 5 | 21 | 208 | 9 | 207 | 6.74e-35 | 130 |
| Msa0508800 | AT1G52750.1 | 37.500 | 200 | 110 | 5 | 21 | 212 | 11 | 203 | 3.12e-29 | 114 |
| Msa0508800 | AT1G15490.1 | 39.806 | 206 | 99 | 6 | 21 | 208 | 9 | 207 | 1.22e-25 | 104 |
| Msa0508800 | AT1G15490.3 | 39.806 | 206 | 99 | 6 | 21 | 208 | 9 | 207 | 1.30e-25 | 104 |
Find 67 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGATGATGATTTATTAT+AGG | 0.206555 | 3_4:+57033119 | None:intergenic |
| AAATTGTTGATTGGTGTTAT+AGG | 0.235723 | 3_4:-57029934 | Msa0508800:three_prime_UTR |
| TGTGTATATATAAAAGTTAA+TGG | 0.250435 | 3_4:-57029810 | Msa0508800:three_prime_UTR |
| CTCTCTTCTTGAAGAATCTT+AGG | 0.256779 | 3_4:+57030281 | None:intergenic |
| TTTAAAGCTGTTTATGTGTT+TGG | 0.273584 | 3_4:-57032590 | Msa0508800:CDS |
| TTGATTGGTGTTATAGGTAT+AGG | 0.310602 | 3_4:-57029928 | Msa0508800:three_prime_UTR |
| ATTATTCAAAGGAGCTGAAA+TGG | 0.332065 | 3_4:-57033080 | Msa0508800:CDS |
| CAGATTTCAGCTTGCACAAA+TGG | 0.343327 | 3_4:-57030317 | Msa0508800:CDS |
| TAAATCATCATCATGAGAAT+TGG | 0.352798 | 3_4:-57033112 | Msa0508800:exon |
| GTTGTTAAGGAAAGAGAAAC+AGG | 0.354501 | 3_4:+57032896 | None:intergenic |
| TAGAGAGAGAAGAAAGCTTT+TGG | 0.358985 | 3_4:-57032468 | Msa0508800:CDS |
| CTCTCTACAACTTGTTCTAT+AGG | 0.360607 | 3_4:+57032484 | None:intergenic |
| ATAGGAAAATAAAGAAATAA+AGG | 0.367369 | 3_4:+57033137 | None:intergenic |
| ATGAGAAGAGAGTGTTGTTA+AGG | 0.381925 | 3_4:+57032883 | None:intergenic |
| GCTGTTTATGTGTTTGGAAA+TGG | 0.390941 | 3_4:-57032584 | Msa0508800:CDS |
| TATAAAAGTTAATGGATTGT+TGG | 0.395144 | 3_4:-57029802 | Msa0508800:three_prime_UTR |
| GGACTAACATATTAGATTAG+AGG | 0.406011 | 3_4:-57030233 | Msa0508800:three_prime_UTR |
| ACTAGACTATAATCAGTGTT+GGG | 0.409865 | 3_4:+57029986 | None:intergenic |
| TCAGCAATAACCAATAGAAC+CGG | 0.440120 | 3_4:+57032956 | None:intergenic |
| TTGTTGTGTGATTGCTTACA+AGG | 0.450633 | 3_4:+57033178 | None:intergenic |
| GTGTTCTTGTGCGTTGGCTG+TGG | 0.460083 | 3_4:-57032522 | Msa0508800:CDS |
| AACGTTGTTATACACAAATA+AGG | 0.468377 | 3_4:+57032644 | None:intergenic |
| TTACAAGGTGAAGGGTTAAG+AGG | 0.474730 | 3_4:+57033193 | None:intergenic |
| AAAGAATACCAGCATTCCTT+AGG | 0.482309 | 3_4:+57030013 | None:intergenic |
| CTACTTACAGAAAATGATGA+AGG | 0.486815 | 3_4:+57032799 | None:intergenic |
| GGAAGCAAATTATTATTCAA+AGG | 0.489130 | 3_4:-57033091 | Msa0508800:CDS |
| GTTTGTGTGTTCTTGTGCGT+TGG | 0.489131 | 3_4:-57032528 | Msa0508800:CDS |
| AGTTTGTATCGGTCATATAG+AGG | 0.494311 | 3_4:+57033326 | None:intergenic |
| GGAAATGGAAGTGGCTATGT+TGG | 0.494818 | 3_4:-57032569 | Msa0508800:CDS |
| AGTGTTGAGAGAAGAGCTGA+AGG | 0.503134 | 3_4:+57032923 | None:intergenic |
| AGATTTCAGCTTGCACAAAT+GGG | 0.503541 | 3_4:-57030316 | Msa0508800:CDS |
| AACTAGACTATAATCAGTGT+TGG | 0.504349 | 3_4:+57029985 | None:intergenic |
| TTATTCAAAGGAGCTGAAAT+GGG | 0.504508 | 3_4:-57033079 | Msa0508800:CDS |
| TGTTCTTGTGCGTTGGCTGT+GGG | 0.508786 | 3_4:-57032521 | Msa0508800:CDS |
| TGAGACATAAAATTGTTGAT+TGG | 0.509232 | 3_4:-57029943 | Msa0508800:three_prime_UTR |
| CCTCTTGATCGTGAAAGTCT+TGG | 0.511477 | 3_4:+57032668 | None:intergenic |
| ATCTTGTTGCAGGTTTCCTA+AGG | 0.513053 | 3_4:-57030029 | Msa0508800:intron |
| GCAGGTTTCCTAAGGAATGC+TGG | 0.513998 | 3_4:-57030021 | Msa0508800:intron |
| AGAGAAAGAGAGGAAGGTGC+AGG | 0.517261 | 3_4:+57033228 | None:intergenic |
| TGTATCGGTCATATAGAGGT+TGG | 0.527744 | 3_4:+57033330 | None:intergenic |
| AGAGAGGAAGGTGCAGGCCA+AGG | 0.532625 | 3_4:+57033234 | None:intergenic |
| ATAAGATATACACCAATCAA+AGG | 0.537931 | 3_4:+57029840 | None:intergenic |
| TATGTGTTTGGAAATGGAAG+TGG | 0.538754 | 3_4:-57032578 | Msa0508800:CDS |
| TTAAGTCCTCATGTTCATCA+AGG | 0.539933 | 3_4:-57030147 | Msa0508800:three_prime_UTR |
| TAAGATATACACCAATCAAA+GGG | 0.546528 | 3_4:+57029841 | None:intergenic |
| TGTGATTGCTTACAAGGTGA+AGG | 0.548103 | 3_4:+57033184 | None:intergenic |
| CAGCAATAACCAATAGAACC+GGG | 0.564536 | 3_4:+57032957 | None:intergenic |
| CTAGACTATAATCAGTGTTG+GGG | 0.572305 | 3_4:+57029987 | None:intergenic |
| GGTGTTTATAGTTTATGTGA+TGG | 0.578444 | 3_4:-57032692 | Msa0508800:CDS |
| TGAAGAATCTTAGGATACCT+CGG | 0.581840 | 3_4:+57030290 | None:intergenic |
| GGATCTTATGATTGAAACGA+GGG | 0.584128 | 3_4:+57032820 | None:intergenic |
| TACAAGGTGAAGGGTTAAGA+GGG | 0.584226 | 3_4:+57033194 | None:intergenic |
| ATCTAAAAGAATATTAAGAG+TGG | 0.588910 | 3_4:-57033035 | Msa0508800:CDS |
| TTATGTTTAGAAGTTTGTAT+CGG | 0.592182 | 3_4:+57033315 | None:intergenic |
| AAGTGGCTATGTTGGAGGAT+CGG | 0.593487 | 3_4:-57032561 | Msa0508800:CDS |
| CCAAGACTTTCACGATCAAG+AGG | 0.609953 | 3_4:-57032668 | Msa0508800:CDS |
| GGCTGTGGGACATGTTGTCG+TGG | 0.612882 | 3_4:-57032507 | Msa0508800:CDS |
| GGCATTCCTTGATGAACATG+AGG | 0.624080 | 3_4:+57030141 | None:intergenic |
| AATGGAAGTGGCTATGTTGG+AGG | 0.637532 | 3_4:-57032566 | Msa0508800:CDS |
| CTTGCACAAATGGGTATCCG+AGG | 0.640579 | 3_4:-57030307 | Msa0508800:CDS |
| GTGATTGCTTACAAGGTGAA+GGG | 0.640826 | 3_4:+57033185 | None:intergenic |
| ATGTTCATCAAGGAATGCCA+CGG | 0.654170 | 3_4:-57030137 | Msa0508800:intron |
| AAATGATCAGTCACTCACTG+TGG | 0.692270 | 3_4:-57030254 | Msa0508800:exon |
| AGCAATAACCAATAGAACCG+GGG | 0.697692 | 3_4:+57032958 | None:intergenic |
| AGGATCTTATGATTGAAACG+AGG | 0.704662 | 3_4:+57032819 | None:intergenic |
| TAGACTATAATCAGTGTTGG+GGG | 0.711570 | 3_4:+57029988 | None:intergenic |
| GATCTTATGATTGAAACGAG+GGG | 0.745500 | 3_4:+57032821 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATAGTATCAATTAAA+AGG | + | chr3_4:57030948-57030967 | None:intergenic | 10.0% |
| !! | ATAGGAAAATAAAGAAATAA+AGG | + | chr3_4:57029990-57030009 | None:intergenic | 15.0% |
| !!! | TGTTTTATTTTTTTTGATGT+AGG | - | chr3_4:57030411-57030430 | Msa0508800:intron | 15.0% |
| !!! | TTTTTAAAATTATTGTGCTT+TGG | - | chr3_4:57030753-57030772 | Msa0508800:intron | 15.0% |
| !! | TTAGTCAAAAATAAACATTA+TGG | - | chr3_4:57031003-57031022 | Msa0508800:intron | 15.0% |
| !!! | TATTTAATTTTTTTCAGCTT+TGG | - | chr3_4:57031608-57031627 | Msa0508800:intron | 15.0% |
| !!! | TGGTTTTTTTTTTTTTTTGA+GGG | - | chr3_4:57031674-57031693 | Msa0508800:intron | 15.0% |
| !! | AATTTGTATTGAAAATATGA+GGG | + | chr3_4:57031832-57031851 | None:intergenic | 15.0% |
| !! | AAATTTGTATTGAAAATATG+AGG | + | chr3_4:57031833-57031852 | None:intergenic | 15.0% |
| !! | TATTATGTATAGTCAAAATT+TGG | + | chr3_4:57032293-57032312 | None:intergenic | 15.0% |
| !! | ATATTAATTTACAAACATCT+AGG | - | chr3_4:57032310-57032329 | Msa0508800:intron | 15.0% |
| !! | TTGTTAAGATCTTTATAATT+AGG | + | chr3_4:57032691-57032710 | None:intergenic | 15.0% |
| !! | TTTAGATAAACATATAAATG+TGG | + | chr3_4:57032737-57032756 | None:intergenic | 15.0% |
| !!! | AAAATATCAAAAGTATAACA+TGG | + | chr3_4:57032786-57032805 | None:intergenic | 15.0% |
| !! | TGTGTATATATAAAAGTTAA+TGG | - | chr3_4:57033314-57033333 | Msa0508800:five_prime_UTR | 15.0% |
| !! | TTATGTTTAGAAGTTTGTAT+CGG | + | chr3_4:57029812-57029831 | None:intergenic | 20.0% |
| !!! | TCATGATGATGATTTATTAT+AGG | + | chr3_4:57030008-57030027 | None:intergenic | 20.0% |
| !! | ATCTAAAAGAATATTAAGAG+TGG | - | chr3_4:57030089-57030108 | Msa0508800:intron | 20.0% |
| !!! | CATTGATATTTTCAACATTT+TGG | - | chr3_4:57030974-57030993 | Msa0508800:intron | 20.0% |
| !!! | AATTTCATCTTTTAGAATGT+AGG | - | chr3_4:57031314-57031333 | Msa0508800:intron | 20.0% |
| !!! | ATTTTGCTCTAATATCAATA+AGG | + | chr3_4:57031497-57031516 | None:intergenic | 20.0% |
| !! | TATTGATATTAGAGCAAAAT+AGG | - | chr3_4:57031497-57031516 | Msa0508800:intron | 20.0% |
| !! | ATTGATATTAGAGCAAAATA+GGG | - | chr3_4:57031498-57031517 | Msa0508800:intron | 20.0% |
| !!! | GTGGTTTTTTTTTTTTTTTG+AGG | - | chr3_4:57031673-57031692 | Msa0508800:intron | 20.0% |
| !!! | ATTTTGATAAAATCAAGACT+TGG | - | chr3_4:57031893-57031912 | Msa0508800:intron | 20.0% |
| !! | TTTCTTAAGAAATGTGAAAA+AGG | + | chr3_4:57031968-57031987 | None:intergenic | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+AGG | - | chr3_4:57032085-57032104 | Msa0508800:intron | 20.0% |
| !! | GGAACAAATATAAAATCAAA+TGG | - | chr3_4:57032166-57032185 | Msa0508800:intron | 20.0% |
| !! | CAAATATAAAATCAAATGGA+TGG | - | chr3_4:57032170-57032189 | Msa0508800:intron | 20.0% |
| !!! | ATTTTTTTGCCTTAAGATAA+TGG | - | chr3_4:57032401-57032420 | Msa0508800:intron | 20.0% |
| !! | TATTATTAATTGTTGCTAGT+GGG | + | chr3_4:57032470-57032489 | None:intergenic | 20.0% |
| !! | TATCCCACTTAATAATTATA+AGG | - | chr3_4:57032494-57032513 | Msa0508800:CDS | 20.0% |
| !! | ATCCCACTTAATAATTATAA+GGG | - | chr3_4:57032495-57032514 | Msa0508800:CDS | 20.0% |
| !! | ATAGAAATACACATATCAAA+AGG | + | chr3_4:57032623-57032642 | None:intergenic | 20.0% |
| !!! | AAAAAGTAGCAATTAGATTT+TGG | + | chr3_4:57033073-57033092 | None:intergenic | 20.0% |
| !!! | TATAAAAGTTAATGGATTGT+TGG | - | chr3_4:57033322-57033341 | Msa0508800:five_prime_UTR | 20.0% |
| ! | TAAATCATCATCATGAGAAT+TGG | - | chr3_4:57030012-57030031 | Msa0508800:three_prime_UTR | 25.0% |
| ! | GGAAGCAAATTATTATTCAA+AGG | - | chr3_4:57030033-57030052 | Msa0508800:intron | 25.0% |
| !!! | TTTATTTTCAATGACCCTTT+TGG | - | chr3_4:57030371-57030390 | Msa0508800:intron | 25.0% |
| ! | CCTTTAATCAAAATCCAAAA+GGG | + | chr3_4:57030388-57030407 | None:intergenic | 25.0% |
| !!! | CCTTTTGGATTTTGATTAAA+GGG | - | chr3_4:57030386-57030405 | Msa0508800:intron | 25.0% |
| ! | AACGTTGTTATACACAAATA+AGG | + | chr3_4:57030483-57030502 | None:intergenic | 25.0% |
| !! | TTTAAAGCTGTTTATGTGTT+TGG | - | chr3_4:57030534-57030553 | Msa0508800:intron | 25.0% |
| ! | TTAAAATTATTGTGCTTTGG+TGG | - | chr3_4:57030756-57030775 | Msa0508800:intron | 25.0% |
| !! | TTTTAAATGGTACTTACGAT+AGG | + | chr3_4:57031449-57031468 | None:intergenic | 25.0% |
| !! | GTAAGTACCATTTAAAATCA+AGG | - | chr3_4:57031452-57031471 | Msa0508800:intron | 25.0% |
| !! | GAAGTTTCCTTGATTTTAAA+TGG | + | chr3_4:57031462-57031481 | None:intergenic | 25.0% |
| ! | TTGATATTAGAGCAAAATAG+GGG | - | chr3_4:57031499-57031518 | Msa0508800:intron | 25.0% |
| !! | TTTTGAATACAGCATATATG+AGG | - | chr3_4:57031651-57031670 | Msa0508800:intron | 25.0% |
| ! | GGGTATAAATGTATAATACA+TGG | - | chr3_4:57031726-57031745 | Msa0508800:intron | 25.0% |
| ! | CTATTTGGAAGTAATTCAAT+GGG | + | chr3_4:57031805-57031824 | None:intergenic | 25.0% |
| ! | ACTATTTGGAAGTAATTCAA+TGG | + | chr3_4:57031806-57031825 | None:intergenic | 25.0% |
| !! | GTCTTGATTTTATCAAAATC+AGG | + | chr3_4:57031892-57031911 | None:intergenic | 25.0% |
| ! | CATACAAACAAATGACAATT+TGG | + | chr3_4:57032035-57032054 | None:intergenic | 25.0% |
| !! | TATTAATTAGAGGCATGTTT+AGG | - | chr3_4:57032095-57032114 | Msa0508800:intron | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | - | chr3_4:57032131-57032150 | Msa0508800:intron | 25.0% |
| ! | TTGAAAAGGAGTTTACATTT+AGG | - | chr3_4:57032145-57032164 | Msa0508800:intron | 25.0% |
| ! | CTATTATTAATTGTTGCTAG+TGG | + | chr3_4:57032471-57032490 | None:intergenic | 25.0% |
| ! | CACTAGCAACAATTAATAAT+AGG | - | chr3_4:57032469-57032488 | Msa0508800:CDS | 25.0% |
| ! | GACCCTTATAATTATTAAGT+GGG | + | chr3_4:57032500-57032519 | None:intergenic | 25.0% |
| ! | TGACCCTTATAATTATTAAG+TGG | + | chr3_4:57032501-57032520 | None:intergenic | 25.0% |
| ! | AATGCAAAATTGCTCTATTT+AGG | + | chr3_4:57032559-57032578 | None:intergenic | 25.0% |
| !! | ATCAACAATTTTATGTCTCA+TGG | + | chr3_4:57033181-57033200 | None:intergenic | 25.0% |
| ! | TGAGACATAAAATTGTTGAT+TGG | - | chr3_4:57033181-57033200 | Msa0508800:five_prime_UTR | 25.0% |
| !!! | AAATTGTTGATTGGTGTTAT+AGG | - | chr3_4:57033190-57033209 | Msa0508800:five_prime_UTR | 25.0% |
| !!! | ACTTTTATTTTCCCTTTGAT+TGG | - | chr3_4:57033272-57033291 | Msa0508800:five_prime_UTR | 25.0% |
| ! | TAAGATATACACCAATCAAA+GGG | + | chr3_4:57033286-57033305 | None:intergenic | 25.0% |
| ! | ATAAGATATACACCAATCAA+AGG | + | chr3_4:57033287-57033306 | None:intergenic | 25.0% |
| ATTATTCAAAGGAGCTGAAA+TGG | - | chr3_4:57030044-57030063 | Msa0508800:intron | 30.0% | |
| TTATTCAAAGGAGCTGAAAT+GGG | - | chr3_4:57030045-57030064 | Msa0508800:intron | 30.0% | |
| CTACTTACAGAAAATGATGA+AGG | + | chr3_4:57030328-57030347 | None:intergenic | 30.0% | |
| !!! | CCCTTTTGGATTTTGATTAA+AGG | - | chr3_4:57030385-57030404 | Msa0508800:intron | 30.0% |
| CCCTTTAATCAAAATCCAAA+AGG | + | chr3_4:57030389-57030408 | None:intergenic | 30.0% | |
| GGTGTTTATAGTTTATGTGA+TGG | - | chr3_4:57030432-57030451 | Msa0508800:intron | 30.0% | |
| !! | TGGTTGGTAAATGAATTGAA+GGG | + | chr3_4:57030714-57030733 | None:intergenic | 30.0% |
| TATCAATTAAAAGGTTCACG+CGG | + | chr3_4:57030939-57030958 | None:intergenic | 30.0% | |
| ! | AACTAATGGGAATTTTTGTG+AGG | - | chr3_4:57031410-57031429 | Msa0508800:intron | 30.0% |
| TGCTCTAATATCAATAAGGA+AGG | + | chr3_4:57031493-57031512 | None:intergenic | 30.0% | |
| !!! | TTTTTTTGAGGGCATATATG+AGG | - | chr3_4:57031685-57031704 | Msa0508800:intron | 30.0% |
| ATGTATAATACATGGCCATA+AGG | - | chr3_4:57031734-57031753 | Msa0508800:intron | 30.0% | |
| TGTATAATACATGGCCATAA+GGG | - | chr3_4:57031735-57031754 | Msa0508800:intron | 30.0% | |
| ! | TTTTAGACTAGTATATGACG+TGG | + | chr3_4:57031772-57031791 | None:intergenic | 30.0% |
| AAATATGAGGGTAGACTATT+TGG | + | chr3_4:57031820-57031839 | None:intergenic | 30.0% | |
| AAGAAATGTGAAAAAGGCAA+AGG | + | chr3_4:57031962-57031981 | None:intergenic | 30.0% | |
| CAAAATTTGGTCACCAATTT+AGG | + | chr3_4:57032280-57032299 | None:intergenic | 30.0% | |
| CAATATTGGCCATTATCTTA+AGG | + | chr3_4:57032413-57032432 | None:intergenic | 30.0% | |
| TATCTTAACATGTGTCTTGA+GGG | - | chr3_4:57032649-57032668 | Msa0508800:CDS | 30.0% | |
| GGACTAACATATTAGATTAG+AGG | - | chr3_4:57032891-57032910 | Msa0508800:CDS | 30.0% | |
| !! | TACTTTTTGAATCTTGTTGC+AGG | - | chr3_4:57033085-57033104 | Msa0508800:CDS | 30.0% |
| ACTAGACTATAATCAGTGTT+GGG | + | chr3_4:57033141-57033160 | None:intergenic | 30.0% | |
| AACTAGACTATAATCAGTGT+TGG | + | chr3_4:57033142-57033161 | None:intergenic | 30.0% | |
| ! | AATTTTATGTCTCATGGTAG+CGG | + | chr3_4:57033175-57033194 | None:intergenic | 30.0% |
| !! | TTGATTGGTGTTATAGGTAT+AGG | - | chr3_4:57033196-57033215 | Msa0508800:five_prime_UTR | 30.0% |
| !! | GGTATATATAGCTTTAGCTT+TGG | - | chr3_4:57033217-57033236 | Msa0508800:five_prime_UTR | 30.0% |
| ! | AGTTTGTATCGGTCATATAG+AGG | + | chr3_4:57029801-57029820 | None:intergenic | 35.0% |
| ! | TAGTCAATTTTGTTGCACCT+TGG | - | chr3_4:57029873-57029892 | Msa0508800:three_prime_UTR | 35.0% |
| AAAAAGAGAGAAAGAGAGGA+AGG | + | chr3_4:57029905-57029924 | None:intergenic | 35.0% | |
| GAAGAAAAAGAGAGAAAGAG+AGG | + | chr3_4:57029909-57029928 | None:intergenic | 35.0% | |
| TTGTTGTGTGATTGCTTACA+AGG | + | chr3_4:57029949-57029968 | None:intergenic | 35.0% | |
| TCAGCAATAACCAATAGAAC+CGG | + | chr3_4:57030171-57030190 | None:intergenic | 35.0% | |
| GTTGTTAAGGAAAGAGAAAC+AGG | + | chr3_4:57030231-57030250 | None:intergenic | 35.0% | |
| !! | ATGAGAAGAGAGTGTTGTTA+AGG | + | chr3_4:57030244-57030263 | None:intergenic | 35.0% |
| GATCTTATGATTGAAACGAG+GGG | + | chr3_4:57030306-57030325 | None:intergenic | 35.0% | |
| GGATCTTATGATTGAAACGA+GGG | + | chr3_4:57030307-57030326 | None:intergenic | 35.0% | |
| AGGATCTTATGATTGAAACG+AGG | + | chr3_4:57030308-57030327 | None:intergenic | 35.0% | |
| GCTGTTTATGTGTTTGGAAA+TGG | - | chr3_4:57030540-57030559 | Msa0508800:intron | 35.0% | |
| TATGTGTTTGGAAATGGAAG+TGG | - | chr3_4:57030546-57030565 | Msa0508800:intron | 35.0% | |
| ! | CTCTCTACAACTTGTTCTAT+AGG | + | chr3_4:57030643-57030662 | None:intergenic | 35.0% |
| ! | TAGAGAGAGAAGAAAGCTTT+TGG | - | chr3_4:57030656-57030675 | Msa0508800:intron | 35.0% |
| !! | GTGGTTGGTAAATGAATTGA+AGG | + | chr3_4:57030715-57030734 | None:intergenic | 35.0% |
| CAATTCATTTACCAACCACT+TGG | - | chr3_4:57030716-57030735 | Msa0508800:intron | 35.0% | |
| AATTTATGCAAGAAGCCAAG+TGG | + | chr3_4:57030734-57030753 | None:intergenic | 35.0% | |
| CGTAAATTTGTGTGCAAATG+TGG | - | chr3_4:57030902-57030921 | Msa0508800:intron | 35.0% | |
| TAAGCAAACTGGAAACTACT+TGG | + | chr3_4:57031358-57031377 | None:intergenic | 35.0% | |
| ! | TTCCAGTTTGCTTAATGACT+TGG | - | chr3_4:57031364-57031383 | Msa0508800:intron | 35.0% |
| ! | TTGCTTAATGACTTGGAGTA+TGG | - | chr3_4:57031371-57031390 | Msa0508800:intron | 35.0% |
| CTTTCACGATAGGAACTAAT+GGG | - | chr3_4:57031397-57031416 | Msa0508800:intron | 35.0% | |
| ! | GGAATTTTTGTGAGGTAACA+AGG | - | chr3_4:57031418-57031437 | Msa0508800:intron | 35.0% |
| AAATGGTACTTACGATAGGT+GGG | + | chr3_4:57031445-57031464 | None:intergenic | 35.0% | |
| TAAATGGTACTTACGATAGG+TGG | + | chr3_4:57031446-57031465 | None:intergenic | 35.0% | |
| GTTGAATTTCCTTTGTCTTC+TGG | - | chr3_4:57031521-57031540 | Msa0508800:intron | 35.0% | |
| AATTTCCTTTGTCTTCTGGA+AGG | - | chr3_4:57031525-57031544 | Msa0508800:intron | 35.0% | |
| ! | ACTTTGATGACAATTCCACT+TGG | - | chr3_4:57031558-57031577 | Msa0508800:intron | 35.0% |
| TGAATACAGCATATATGAGG+TGG | - | chr3_4:57031654-57031673 | Msa0508800:intron | 35.0% | |
| ATATGAGGTGGTTGTATAGT+TGG | - | chr3_4:57031700-57031719 | Msa0508800:intron | 35.0% | |
| TATGAGGTGGTTGTATAGTT+GGG | - | chr3_4:57031701-57031720 | Msa0508800:intron | 35.0% | |
| GTATAATACATGGCCATAAG+GGG | - | chr3_4:57031736-57031755 | Msa0508800:intron | 35.0% | |
| AGGTTTACATATAAGGACGA+AGG | + | chr3_4:57031939-57031958 | None:intergenic | 35.0% | |
| GCAAAGGAGGTTTACATATA+AGG | + | chr3_4:57031946-57031965 | None:intergenic | 35.0% | |
| AAATGTGAAAAAGGCAAAGG+AGG | + | chr3_4:57031959-57031978 | None:intergenic | 35.0% | |
| GTTCAAAGAATATGTGCAAG+TGG | - | chr3_4:57032246-57032265 | Msa0508800:intron | 35.0% | |
| ! | GCGTGCATTTAACTTCTTAA+AGG | + | chr3_4:57032601-57032620 | None:intergenic | 35.0% |
| GTATCTTAACATGTGTCTTG+AGG | - | chr3_4:57032648-57032667 | Msa0508800:CDS | 35.0% | |
| ATGTGGCATGAAAAGAACAT+GGG | + | chr3_4:57032720-57032739 | None:intergenic | 35.0% | |
| AATGTGGCATGAAAAGAACA+TGG | + | chr3_4:57032721-57032740 | None:intergenic | 35.0% | |
| AGATTTCAGCTTGCACAAAT+GGG | - | chr3_4:57032808-57032827 | Msa0508800:CDS | 35.0% | |
| TGAAGAATCTTAGGATACCT+CGG | + | chr3_4:57032837-57032856 | None:intergenic | 35.0% | |
| CTCTCTTCTTGAAGAATCTT+AGG | + | chr3_4:57032846-57032865 | None:intergenic | 35.0% | |
| TTAAGTCCTCATGTTCATCA+AGG | - | chr3_4:57032977-57032996 | Msa0508800:CDS | 35.0% | |
| GTCTCAAAAGATAATTACCG+TGG | + | chr3_4:57033007-57033026 | None:intergenic | 35.0% | |
| AAAGAATACCAGCATTCCTT+AGG | + | chr3_4:57033114-57033133 | None:intergenic | 35.0% | |
| ! | TAGACTATAATCAGTGTTGG+GGG | + | chr3_4:57033139-57033158 | None:intergenic | 35.0% |
| CTAGACTATAATCAGTGTTG+GGG | + | chr3_4:57033140-57033159 | None:intergenic | 35.0% | |
| ! | TGTATCGGTCATATAGAGGT+TGG | + | chr3_4:57029797-57029816 | None:intergenic | 40.0% |
| TACAAGGTGAAGGGTTAAGA+GGG | + | chr3_4:57029933-57029952 | None:intergenic | 40.0% | |
| TTACAAGGTGAAGGGTTAAG+AGG | + | chr3_4:57029934-57029953 | None:intergenic | 40.0% | |
| GTGATTGCTTACAAGGTGAA+GGG | + | chr3_4:57029942-57029961 | None:intergenic | 40.0% | |
| TGTGATTGCTTACAAGGTGA+AGG | + | chr3_4:57029943-57029962 | None:intergenic | 40.0% | |
| ! | ACTTCTTCTATTTTCTGCCC+CGG | - | chr3_4:57030149-57030168 | Msa0508800:three_prime_UTR | 40.0% |
| AGCAATAACCAATAGAACCG+GGG | + | chr3_4:57030169-57030188 | None:intergenic | 40.0% | |
| CAGCAATAACCAATAGAACC+GGG | + | chr3_4:57030170-57030189 | None:intergenic | 40.0% | |
| CTCCAAGTCATTAAGCAAAC+TGG | + | chr3_4:57031369-57031388 | None:intergenic | 40.0% | |
| ! | CTTAATGACTTGGAGTATGG+TGG | - | chr3_4:57031374-57031393 | Msa0508800:intron | 40.0% |
| GCTTTCACGATAGGAACTAA+TGG | - | chr3_4:57031396-57031415 | Msa0508800:intron | 40.0% | |
| CAATACCTTCCAGAAGACAA+AGG | + | chr3_4:57031533-57031552 | None:intergenic | 40.0% | |
| TTTGCTTTCAAGCATCCAAG+TGG | + | chr3_4:57031576-57031595 | None:intergenic | 40.0% | |
| !! | TTTTGAGGGCATATATGAGG+TGG | - | chr3_4:57031688-57031707 | Msa0508800:intron | 40.0% |
| ATGGTTACATACAGAGACAG+AGG | - | chr3_4:57032189-57032208 | Msa0508800:intron | 40.0% | |
| TGGTTACATACAGAGACAGA+GGG | - | chr3_4:57032190-57032209 | Msa0508800:intron | 40.0% | |
| AGTGGAAACACGTCCTAAAT+TGG | - | chr3_4:57032264-57032283 | Msa0508800:intron | 40.0% | |
| TTATGCCACATGCGAAGATA+TGG | - | chr3_4:57032343-57032362 | Msa0508800:intron | 40.0% | |
| TAACACCATATCTTCGCATG+TGG | + | chr3_4:57032351-57032370 | None:intergenic | 40.0% | |
| CCAATATTGCCAACGCAATT+GGG | - | chr3_4:57032424-57032443 | Msa0508800:intron | 40.0% | |
| !! | TCATGTTAACTTGTGCCCTT+AGG | - | chr3_4:57032518-57032537 | Msa0508800:CDS | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | - | chr3_4:57032519-57032538 | Msa0508800:CDS | 40.0% |
| TTGCTTAACATGTGCCCTAA+GGG | + | chr3_4:57032536-57032555 | None:intergenic | 40.0% | |
| CAGATTTCAGCTTGCACAAA+TGG | - | chr3_4:57032807-57032826 | Msa0508800:CDS | 40.0% | |
| AAATGATCAGTCACTCACTG+TGG | - | chr3_4:57032870-57032889 | Msa0508800:CDS | 40.0% | |
| ATGTTCATCAAGGAATGCCA+CGG | - | chr3_4:57032987-57033006 | Msa0508800:CDS | 40.0% | |
| ATCTTGTTGCAGGTTTCCTA+AGG | - | chr3_4:57033095-57033114 | Msa0508800:CDS | 40.0% | |
| ! | ATTTTCTGCCCCGGTTCTAT+TGG | - | chr3_4:57030158-57030177 | Msa0508800:three_prime_UTR | 45.0% |
| ! | AGTGTTGAGAGAAGAGCTGA+AGG | + | chr3_4:57030204-57030223 | None:intergenic | 45.0% |
| CCTCTTGATCGTGAAAGTCT+TGG | + | chr3_4:57030459-57030478 | None:intergenic | 45.0% | |
| CCAAGACTTTCACGATCAAG+AGG | - | chr3_4:57030456-57030475 | Msa0508800:intron | 45.0% | |
| GGAAATGGAAGTGGCTATGT+TGG | - | chr3_4:57030555-57030574 | Msa0508800:intron | 45.0% | |
| AATGGAAGTGGCTATGTTGG+AGG | - | chr3_4:57030558-57030577 | Msa0508800:intron | 45.0% | |
| AAGTGGCTATGTTGGAGGAT+CGG | - | chr3_4:57030563-57030582 | Msa0508800:intron | 45.0% | |
| GTTTGTGTGTTCTTGTGCGT+TGG | - | chr3_4:57030596-57030615 | Msa0508800:intron | 45.0% | |
| TATGCAAGAAGCCAAGTGGT+TGG | + | chr3_4:57030730-57030749 | None:intergenic | 45.0% | |
| AGTATGGTGGCTTTCACGAT+AGG | - | chr3_4:57031387-57031406 | Msa0508800:intron | 45.0% | |
| AGGTGGTTGTATAGTTGGGT+AGG | - | chr3_4:57031705-57031724 | Msa0508800:intron | 45.0% | |
| GGTGGTTGTATAGTTGGGTA+GGG | - | chr3_4:57031706-57031725 | Msa0508800:intron | 45.0% | |
| ACATGGCCATAAGGGGATAT+TGG | - | chr3_4:57031743-57031762 | Msa0508800:intron | 45.0% | |
| TGGAGTCCAATATCCCCTTA+TGG | + | chr3_4:57031752-57031771 | None:intergenic | 45.0% | |
| GCCAATATTGCCAACGCAAT+TGG | - | chr3_4:57032423-57032442 | Msa0508800:intron | 45.0% | |
| ! | CCCAATTGCGTTGGCAATAT+TGG | + | chr3_4:57032427-57032446 | None:intergenic | 45.0% |
| GTTGCTTAACATGTGCCCTA+AGG | + | chr3_4:57032537-57032556 | None:intergenic | 45.0% | |
| GGCATTCCTTGATGAACATG+AGG | + | chr3_4:57032986-57033005 | None:intergenic | 45.0% | |
| ! | AGAGAAAGAGAGGAAGGTGC+AGG | + | chr3_4:57029899-57029918 | None:intergenic | 50.0% |
| !! | TGTTCTTGTGCGTTGGCTGT+GGG | - | chr3_4:57030603-57030622 | Msa0508800:intron | 50.0% |
| CTTGCACAAATGGGTATCCG+AGG | - | chr3_4:57032817-57032836 | Msa0508800:CDS | 50.0% | |
| GCAGGTTTCCTAAGGAATGC+TGG | - | chr3_4:57033103-57033122 | Msa0508800:CDS | 50.0% | |
| !! | GTGTTCTTGTGCGTTGGCTG+TGG | - | chr3_4:57030602-57030621 | Msa0508800:intron | 55.0% |
| TTGCAGGGTCCCAATTGCGT+TGG | + | chr3_4:57032436-57032455 | None:intergenic | 55.0% | |
| GCAATTGGGACCCTGCAAGT+TGG | - | chr3_4:57032438-57032457 | Msa0508800:intron | 55.0% | |
| ! | ATTGGGACCCTGCAAGTTGG+AGG | - | chr3_4:57032441-57032460 | Msa0508800:intron | 55.0% |
| TGGGTAGCCTCCAACTTGCA+GGG | + | chr3_4:57032451-57032470 | None:intergenic | 55.0% | |
| ! | AGAGAGGAAGGTGCAGGCCA+AGG | + | chr3_4:57029893-57029912 | None:intergenic | 60.0% |
| GGCTGTGGGACATGTTGTCG+TGG | - | chr3_4:57030617-57030636 | Msa0508800:intron | 60.0% | |
| GTGGGTAGCCTCCAACTTGC+AGG | + | chr3_4:57032452-57032471 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 57029794 | 57033352 | 57029794 | ID=Msa0508800;Name=Msa0508800 |
| chr3_4 | mRNA | 57029794 | 57033352 | 57029794 | ID=Msa0508800-mRNA-1;Parent=Msa0508800;Name=Msa0508800-mRNA-1;_AED=0.09;_eAED=0.09;_QI=230|1|1|1|0.5|0.4|5|359|216 |
| chr3_4 | exon | 57029794 | 57029904 | 57029794 | ID=Msa0508800-mRNA-1:exon:12968;Parent=Msa0508800-mRNA-1 |
| chr3_4 | exon | 57029925 | 57030039 | 57029925 | ID=Msa0508800-mRNA-1:exon:12967;Parent=Msa0508800-mRNA-1 |
| chr3_4 | exon | 57030138 | 57030336 | 57030138 | ID=Msa0508800-mRNA-1:exon:12966;Parent=Msa0508800-mRNA-1 |
| chr3_4 | exon | 57032445 | 57032713 | 57032445 | ID=Msa0508800-mRNA-1:exon:12965;Parent=Msa0508800-mRNA-1 |
| chr3_4 | exon | 57032807 | 57033352 | 57032807 | ID=Msa0508800-mRNA-1:exon:12964;Parent=Msa0508800-mRNA-1 |
| chr3_4 | five_prime_UTR | 57033123 | 57033352 | 57033123 | ID=Msa0508800-mRNA-1:five_prime_utr;Parent=Msa0508800-mRNA-1 |
| chr3_4 | CDS | 57032807 | 57033122 | 57032807 | ID=Msa0508800-mRNA-1:cds;Parent=Msa0508800-mRNA-1 |
| chr3_4 | CDS | 57032445 | 57032713 | 57032445 | ID=Msa0508800-mRNA-1:cds;Parent=Msa0508800-mRNA-1 |
| chr3_4 | CDS | 57030271 | 57030336 | 57030271 | ID=Msa0508800-mRNA-1:cds;Parent=Msa0508800-mRNA-1 |
| chr3_4 | three_prime_UTR | 57030138 | 57030270 | 57030138 | ID=Msa0508800-mRNA-1:three_prime_utr;Parent=Msa0508800-mRNA-1 |
| chr3_4 | three_prime_UTR | 57029925 | 57030039 | 57029925 | ID=Msa0508800-mRNA-1:three_prime_utr;Parent=Msa0508800-mRNA-1 |
| chr3_4 | three_prime_UTR | 57029794 | 57029904 | 57029794 | ID=Msa0508800-mRNA-1:three_prime_utr;Parent=Msa0508800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
