AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0509190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509190 MtrunA17_Chr3g0114081 98.812 589 7 0 1 589 1 589 0.0 1197
Msa0509190 MtrunA17_Chr2g0307471 36.989 465 265 8 5 464 82 523 6.75e-86 278
Msa0509190 MtrunA17_Chr4g0062301 36.281 441 256 10 28 463 109 529 2.66e-80 263
Msa0509190 MtrunA17_Chr5g0443991 35.920 451 260 8 33 478 93 519 1.24e-72 247
Msa0509190 MtrunA17_Chr4g0034411 36.059 477 270 11 13 478 67 519 4.45e-71 243
Msa0509190 MtrunA17_Chr4g0029191 29.121 546 304 13 7 472 37 579 3.39e-61 213
Msa0509190 MtrunA17_Chr2g0301281 29.730 518 284 11 34 472 60 576 4.82e-61 213
Msa0509190 MtrunA17_Chr6g0483491 35.476 389 222 8 7 394 5 365 9.76e-61 207
Msa0509190 MtrunA17_Chr7g0236841 35.476 389 222 8 7 394 5 365 2.33e-60 207
Msa0509190 MtrunA17_Chr2g0300291 33.820 411 244 8 6 411 131 518 1.82e-57 205
Msa0509190 MtrunA17_Chr3g0098121 34.328 402 226 9 6 398 142 514 5.52e-57 204
Msa0509190 MtrunA17_Chr4g0040761 32.494 397 234 9 22 409 25 396 1.13e-55 201
Msa0509190 MtrunA17_Chr5g0442191 32.031 384 230 9 4 382 69 426 1.29e-53 192
Msa0509190 MtrunA17_Chr8g0347171 30.357 392 246 9 10 392 156 529 1.74e-53 192
Msa0509190 MtrunA17_Chr3g0095031 31.967 366 224 7 19 382 93 435 2.61e-53 191
Msa0509190 MtrunA17_Chr4g0076491 33.176 425 231 13 22 424 293 686 2.83e-53 193
Msa0509190 MtrunA17_Chr8g0386451 30.543 442 285 9 10 445 284 709 6.63e-53 193
Msa0509190 MtrunA17_Chr2g0293631 32.212 416 240 12 26 431 506 889 7.66e-53 195
Msa0509190 MtrunA17_Chr6g0449741 33.420 383 211 9 22 384 255 613 1.29e-52 191
Msa0509190 MtrunA17_Chr8g0347161 28.442 443 292 10 10 446 98 521 1.42e-52 189
Msa0509190 MtrunA17_Chr1g0176041 35.635 362 195 12 39 384 177 516 1.64e-52 189
Msa0509190 MtrunA17_Chr3g0121351 35.537 363 195 11 39 384 168 508 2.47e-52 189
Msa0509190 MtrunA17_Chr1g0200181 32.419 401 231 13 15 404 146 517 2.85e-52 188
Msa0509190 MtrunA17_Chr3g0107851 32.225 391 233 7 15 396 118 485 3.26e-52 187
Msa0509190 MtrunA17_Chr6g0449911 33.333 390 231 10 26 408 175 542 3.73e-52 190
Msa0509190 MtrunA17_Chr1g0157691 32.283 381 220 11 15 384 148 501 5.91e-50 182
Msa0509190 MtrunA17_Chr7g0271121 32.099 405 245 10 22 422 112 490 6.54e-50 184
Msa0509190 MtrunA17_Chr2g0330401 32.208 385 222 10 6 384 93 444 1.18e-49 179
Msa0509190 MtrunA17_Chr7g0270131 32.880 368 226 7 26 392 242 589 3.74e-49 182
Msa0509190 MtrunA17_Chr5g0409981 33.687 377 220 11 14 384 104 456 1.63e-48 177
Msa0509190 MtrunA17_Chr8g0347151 29.820 389 252 8 10 392 197 570 2.76e-47 176
Msa0509190 MtrunA17_Chr2g0277821 29.873 395 246 7 22 410 510 879 2.83e-47 178
Msa0509190 MtrunA17_Chr4g0063551 33.981 412 217 15 17 396 133 521 2.02e-46 173
Msa0509190 MtrunA17_Chr1g0193491 31.351 370 211 8 40 396 138 477 7.03e-45 169
Msa0509190 MtrunA17_Chr8g0354761 29.345 443 271 13 14 444 8 420 8.48e-45 165
Msa0509190 MtrunA17_Chr4g0003441 29.716 387 241 7 9 392 103 461 4.62e-44 164
Msa0509190 MtrunA17_Chr7g0236831 29.787 423 229 10 26 390 173 585 2.18e-43 166
Msa0509190 MtrunA17_Chr4g0070981 29.730 370 232 7 22 390 47 389 1.01e-41 155
Msa0509190 MtrunA17_Chr6g0475251 30.140 428 248 13 22 422 109 512 2.70e-41 159
Msa0509190 MtrunA17_Chr1g0149251 29.819 332 208 5 54 384 2 309 7.54e-41 151
Msa0509190 MtrunA17_Chr7g0247221 28.609 381 243 8 2 381 128 480 2.62e-40 154
Msa0509190 MtrunA17_Chr1g0204391 30.023 443 259 13 22 438 50 467 2.67e-40 154
Msa0509190 MtrunA17_Chr7g0247181 28.609 381 243 8 2 381 125 477 3.33e-40 153
Msa0509190 MtrunA17_Chr8g0342861 28.846 364 231 7 22 384 47 383 4.99e-40 150
Msa0509190 MtrunA17_Chr2g0297261 27.747 364 235 7 22 384 40 376 8.47e-40 150
Msa0509190 MtrunA17_Chr7g0247191 28.609 381 243 8 2 381 135 487 1.12e-39 152
Msa0509190 MtrunA17_Chr2g0299681 28.919 370 233 8 22 389 47 388 3.35e-39 148
Msa0509190 MtrunA17_Chr2g0329931 29.396 364 229 7 22 384 47 383 5.37e-38 145
Msa0509190 MtrunA17_Chr6g0461751 29.067 375 224 11 22 384 146 490 7.67e-38 147
Msa0509190 MtrunA17_Chr2g0310581 31.649 376 224 9 11 381 50 397 9.47e-38 146
Msa0509190 MtrunA17_Chr7g0263771 30.311 386 234 11 15 396 130 484 2.17e-36 144
Msa0509190 MtrunA17_Chr4g0062321 33.603 247 144 6 105 349 5 233 4.43e-36 135
Msa0509190 MtrunA17_Chr5g0429221 28.312 385 242 11 15 395 4 358 5.37e-36 139
Msa0509190 MtrunA17_Chr4g0058591 30.952 336 189 11 27 344 200 510 1.18e-33 134
Msa0509190 MtrunA17_Chr6g0466611 27.792 385 240 11 22 390 148 510 1.61e-32 133
Msa0509190 MtrunA17_Chr3g0145781 28.989 376 222 16 41 390 157 513 7.82e-30 123
Msa0509190 MtrunA17_Chr2g0309551 25.459 436 267 11 4 396 99 519 2.89e-27 116
Msa0509190 MtrunA17_Chr1g0192021 25.532 423 242 10 22 396 32 429 1.92e-24 107
Msa0509190 MtrunA17_Chr4g0004301 25.116 430 235 11 20 384 33 440 1.20e-23 104
Msa0509190 MtrunA17_Chr5g0434301 25.116 430 235 11 20 384 33 440 4.11e-23 103
Msa0509190 MtrunA17_Chr1g0155201 28.958 259 142 8 142 395 13 234 2.78e-22 98.6
Msa0509190 MtrunA17_Chr4g0039471 33.168 202 124 5 15 214 224 416 8.76e-20 92.0
Msa0509190 MtrunA17_Chr4g0074521 24.793 363 245 7 26 373 92 441 1.52e-19 92.0
Msa0509190 MtrunA17_Chr8g0342851 22.807 342 208 10 45 384 2 289 4.13e-18 85.9
Msa0509190 MtrunA17_Chr3g0137891 29.412 170 113 3 54 222 2 165 5.53e-17 80.5
Msa0509190 MtrunA17_Chr1g0169331 23.711 388 232 12 39 390 14 373 1.62e-16 82.0
Msa0509190 MtrunA17_Chr3g0137901 30.282 142 95 1 243 384 8 145 1.29e-15 75.5
Msa0509190 MtrunA17_Chr4g0062331 32.743 113 72 3 350 459 3 114 2.97e-14 71.6
Msa0509190 MtrunA17_Chr1g0155691 33.696 92 59 1 304 395 27 116 3.71e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509190 AT5G05450.1 70.169 590 165 3 7 589 8 593 0.0 850
Msa0509190 AT1G71370.1 62.917 569 188 5 1 560 1 555 0.0 738
Msa0509190 AT1G71280.1 46.749 569 187 10 1 560 1 462 7.09e-163 473
Msa0509190 AT1G71280.2 58.571 350 101 4 1 347 1 309 1.40e-137 404
Msa0509190 AT3G18600.1 36.726 452 262 9 10 459 86 515 1.52e-85 277
Msa0509190 AT5G65900.1 34.402 468 282 9 10 474 151 596 3.69e-78 259
Msa0509190 AT5G54910.1 36.152 473 276 10 14 484 72 520 3.33e-75 254
Msa0509190 AT5G60990.1 37.772 368 192 9 39 394 33 375 3.67e-60 207
Msa0509190 AT4G16630.1 34.737 380 216 8 22 395 174 527 1.51e-58 209
Msa0509190 AT1G77030.1 31.840 424 247 9 22 436 35 425 1.88e-57 207
Msa0509190 AT2G40700.1 30.192 520 281 11 34 472 50 568 1.90e-57 203
Msa0509190 AT3G06480.1 36.022 372 213 10 26 395 446 794 2.03e-56 206
Msa0509190 AT5G51280.1 32.530 415 238 14 15 418 148 531 1.03e-54 196
Msa0509190 AT4G33370.1 32.134 417 241 14 15 420 99 484 1.51e-54 194
Msa0509190 AT5G63630.1 29.797 443 285 10 10 444 51 475 3.78e-54 192
Msa0509190 AT2G42520.2 36.464 362 192 12 39 384 183 522 4.47e-54 194
Msa0509190 AT2G42520.1 36.464 362 192 12 39 384 183 522 4.47e-54 194
Msa0509190 AT2G42520.3 36.464 362 192 12 39 384 183 522 4.47e-54 194
Msa0509190 AT3G58570.1 35.912 362 194 11 39 384 170 509 5.42e-54 194
Msa0509190 AT5G08620.1 31.313 396 245 7 10 396 77 454 2.15e-53 191
Msa0509190 AT3G58510.1 34.772 394 213 13 13 384 141 512 3.12e-53 192
Msa0509190 AT3G58510.3 34.772 394 213 13 13 384 141 512 3.12e-53 192
Msa0509190 AT3G58510.2 34.772 394 213 13 13 384 141 512 3.12e-53 192
Msa0509190 AT5G63630.2 31.762 403 249 9 10 402 245 631 4.49e-53 193
Msa0509190 AT1G16280.1 37.069 348 188 9 39 381 82 403 1.71e-52 187
Msa0509190 AT3G22330.1 32.692 364 218 8 22 382 111 450 2.20e-52 189
Msa0509190 AT3G01540.4 31.643 414 238 13 26 431 169 545 3.89e-51 186
Msa0509190 AT3G01540.2 31.643 414 238 13 26 431 169 545 3.89e-51 186
Msa0509190 AT3G01540.3 31.643 414 238 13 26 431 169 545 3.89e-51 186
Msa0509190 AT3G01540.1 31.643 414 238 13 26 431 169 545 4.20e-51 186
Msa0509190 AT5G08610.1 31.605 405 247 7 10 402 379 765 4.90e-51 189
Msa0509190 AT3G22310.2 31.233 365 224 8 22 383 123 463 3.60e-50 183
Msa0509190 AT3G22310.1 31.233 365 224 8 22 383 123 463 4.50e-50 183
Msa0509190 AT5G14610.6 32.039 412 247 11 22 431 168 548 2.91e-49 181
Msa0509190 AT5G14610.2 32.039 412 247 11 22 431 168 548 3.32e-49 181
Msa0509190 AT5G14610.5 32.039 412 247 11 22 431 176 556 3.52e-49 181
Msa0509190 AT5G63120.2 34.247 365 208 11 26 384 176 514 4.48e-49 180
Msa0509190 AT1G31970.1 33.520 358 213 9 35 386 134 472 7.80e-49 178
Msa0509190 AT5G14610.7 32.419 401 238 11 33 431 48 417 8.79e-49 177
Msa0509190 AT5G14610.3 32.419 401 238 11 33 431 48 417 8.79e-49 177
Msa0509190 AT2G47330.1 32.249 369 230 6 22 390 235 583 4.92e-48 179
Msa0509190 AT5G14610.1 32.419 401 238 11 33 431 247 616 1.06e-47 178
Msa0509190 AT2G33730.1 32.637 383 216 8 22 384 320 680 1.61e-47 177
Msa0509190 AT5G26742.1 32.011 353 205 8 40 383 127 453 2.30e-47 177
Msa0509190 AT5G26742.2 32.011 353 205 8 40 383 127 453 2.32e-47 177
Msa0509190 AT1G20920.4 30.102 392 249 8 22 410 536 905 2.51e-47 179
Msa0509190 AT1G20920.6 30.102 392 249 8 22 410 536 905 2.51e-47 179
Msa0509190 AT1G20920.3 30.102 392 249 8 22 410 536 905 2.51e-47 179
Msa0509190 AT1G20920.7 30.102 392 249 8 22 410 536 905 2.51e-47 179
Msa0509190 AT1G20920.5 30.102 392 249 8 22 410 536 905 2.51e-47 179
Msa0509190 AT1G20920.1 30.102 392 249 8 22 410 536 905 2.51e-47 179
Msa0509190 AT3G06480.2 36.061 330 186 10 26 353 446 752 3.00e-47 177
Msa0509190 AT5G26742.3 32.386 352 202 9 41 383 36 360 3.55e-47 176
Msa0509190 AT1G55150.1 31.915 376 222 9 15 384 101 448 5.58e-47 172
Msa0509190 AT1G20920.2 30.102 392 249 8 22 410 198 567 5.68e-47 177
Msa0509190 AT1G55150.2 32.440 373 224 9 15 384 126 473 9.71e-47 172
Msa0509190 AT1G28180.1 33.526 346 200 8 44 384 2 322 1.57e-44 162
Msa0509190 AT1G51380.1 29.839 372 229 11 15 384 24 365 1.83e-44 163
Msa0509190 AT4G00660.1 28.609 381 243 8 2 381 117 469 2.10e-42 160
Msa0509190 AT4G00660.2 28.609 381 243 8 2 381 117 469 2.10e-42 160
Msa0509190 AT3G19760.1 29.679 374 231 10 13 384 35 378 3.40e-42 157
Msa0509190 AT5G11170.1 30.025 393 232 11 9 392 42 400 9.95e-42 156
Msa0509190 AT5G11200.1 30.025 393 232 11 9 392 42 400 9.95e-42 156
Msa0509190 AT1G63250.1 28.637 433 284 9 22 445 335 751 1.05e-41 161
Msa0509190 AT2G07750.1 29.062 437 277 11 22 445 382 798 1.63e-41 161
Msa0509190 AT3G09620.2 28.645 391 227 7 22 410 404 744 1.72e-41 161
Msa0509190 AT3G09620.1 28.645 391 227 7 22 410 403 743 1.75e-41 161
Msa0509190 AT3G61240.2 28.084 381 245 8 2 381 110 462 2.30e-41 157
Msa0509190 AT3G61240.1 28.084 381 245 8 2 381 110 462 2.30e-41 157
Msa0509190 AT3G09720.2 30.831 373 225 10 26 396 152 493 2.51e-41 157
Msa0509190 AT3G09720.1 30.831 373 225 10 26 396 152 493 2.51e-41 157
Msa0509190 AT2G45810.1 28.084 381 245 8 2 381 140 492 2.41e-40 154
Msa0509190 AT1G72730.1 28.877 374 234 8 17 389 47 389 2.52e-40 152
Msa0509190 AT3G13920.1 29.539 369 232 7 22 389 46 387 3.34e-40 151
Msa0509190 AT3G13920.3 29.539 369 232 7 22 389 36 377 4.00e-40 151
Msa0509190 AT3G13920.2 29.539 369 232 7 22 389 46 387 4.31e-40 151
Msa0509190 AT3G13920.5 29.539 369 232 7 22 389 50 391 4.75e-40 151
Msa0509190 AT1G54270.1 29.670 364 228 7 22 384 46 382 1.62e-39 149
Msa0509190 AT3G13920.4 29.101 378 240 7 13 389 32 382 1.67e-39 149
Msa0509190 AT5G14610.4 33.036 336 200 10 22 356 176 487 9.07e-39 149
Msa0509190 AT1G54270.2 29.830 352 219 7 34 384 53 377 3.13e-38 146
Msa0509190 AT5G11170.2 29.480 346 207 9 54 392 2 317 2.78e-37 142
Msa0509190 AT4G09730.1 28.671 429 259 15 22 432 119 518 3.25e-37 147
Msa0509190 AT5G63120.1 33.333 330 188 11 26 349 176 479 1.98e-36 142
Msa0509190 AT5G63120.3 33.134 335 190 12 26 354 176 482 2.60e-36 142
Msa0509190 AT5G63120.4 33.134 335 190 12 26 354 176 482 2.60e-36 142
Msa0509190 AT5G63120.5 33.134 335 190 12 26 354 176 482 2.60e-36 142
Msa0509190 AT5G62190.1 31.436 369 224 11 22 383 103 449 6.02e-36 143
Msa0509190 AT5G11200.3 27.869 427 238 12 9 392 42 441 7.47e-36 140
Msa0509190 AT5G11200.2 27.626 438 243 13 9 392 42 459 4.69e-34 135
Msa0509190 AT3G16840.1 27.252 433 226 14 26 390 201 612 8.83e-33 134
Msa0509190 AT3G16840.2 27.252 433 226 14 26 390 202 613 1.04e-32 134
Msa0509190 AT3G06980.1 28.906 384 243 10 23 388 382 753 1.85e-32 133
Msa0509190 AT3G02065.3 27.907 387 247 12 3 384 103 462 2.21e-32 131
Msa0509190 AT3G02065.2 27.907 387 247 12 3 384 103 462 2.21e-32 131
Msa0509190 AT1G12770.2 25.000 456 260 10 3 395 100 536 3.68e-30 125
Msa0509190 AT1G12770.1 25.000 456 260 10 3 395 100 536 3.68e-30 125
Msa0509190 AT4G15850.1 27.152 453 251 17 17 412 33 463 2.37e-28 119
Msa0509190 AT3G02065.1 27.035 344 224 10 46 384 4 325 2.73e-28 117
Msa0509190 AT3G53110.1 26.735 389 246 12 11 385 89 452 3.97e-26 112
Msa0509190 AT4G34910.1 25.635 394 234 11 22 373 53 429 3.09e-24 107
Msa0509190 AT1G51380.2 31.507 219 138 7 15 232 24 231 1.16e-23 101
Msa0509190 AT1G51380.4 31.507 219 138 7 15 232 24 231 7.76e-23 99.8
Msa0509190 AT1G51380.3 31.507 219 138 7 15 232 24 231 9.91e-23 99.4
Msa0509190 AT5G19210.2 24.740 384 261 7 24 392 85 455 2.85e-20 94.7
Msa0509190 AT1G28180.2 35.897 117 70 3 44 157 2 116 1.51e-11 62.4
Msa0509190 AT1G59990.2 30.093 216 124 7 22 225 87 287 3.16e-11 66.6
Msa0509190 AT1G59990.1 30.093 216 124 7 22 225 87 287 3.26e-11 66.6

Find 178 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAATAGGATGGATATTT+TGG 0.094078 3_4:-57526366 Msa0509190:CDS
TAGTGGGAGCAAACAAAATT+TGG 0.206414 3_4:+57521591 None:intergenic
TGGCTTCTTTCTTTACTTGC+AGG 0.214905 3_4:+57522190 None:intergenic
TGATAGCATTTATCTGCTTC+TGG 0.233957 3_4:+57525763 None:intergenic
TTGTGCTTGTGTTGACTATT+GGG 0.252553 3_4:-57525141 Msa0509190:CDS
GGAGGAACCTGGTGAGGTTT+GGG 0.292465 3_4:+57526667 None:intergenic
CACTTTCTATGTACATTAAT+CGG 0.309890 3_4:+57521702 None:intergenic
GGGATAGTGGCGGCTTGAAC+GGG 0.311237 3_4:+57526799 None:intergenic
GTCGATGCCGCCACCGGTTC+CGG 0.316733 3_4:-57526748 Msa0509190:CDS
TTCGCTAAAGTCGAAATAAA+AGG 0.318766 3_4:+57526500 None:intergenic
TCGAAATTGATATCTTTAAC+TGG 0.318792 3_4:+57523653 None:intergenic
CTCATGGCAGTAGGTACTTC+AGG 0.321137 3_4:+57522129 None:intergenic
CTTGTGCTTGTGTTGACTAT+TGG 0.322627 3_4:-57525142 Msa0509190:CDS
GGGAGGAACCTGGTGAGGTT+TGG 0.322712 3_4:+57526666 None:intergenic
TGCGACGCTAATTCCCTTGT+AGG 0.324437 3_4:+57526542 None:intergenic
GTTCCTTTGTTTAGTCTGAT+AGG 0.325177 3_4:-57521525 Msa0509190:three_prime_UTR
ACCCTATGTACGAACACATT+TGG 0.326512 3_4:+57524600 None:intergenic
TCTCTCTATCGGCAACAAAA+TGG 0.341539 3_4:+57521751 None:intergenic
GGTACTTCAGGAGTTCTCTT+TGG 0.346860 3_4:+57522141 None:intergenic
AGGTGGAAAGAACTTGAAAT+TGG 0.350487 3_4:-57523761 Msa0509190:CDS
GGTTGGTCGAACTGCTCGGC+TGG 0.352335 3_4:-57524580 Msa0509190:CDS
GGCTGATAGACTATTAGATA+TGG 0.362002 3_4:-57525790 Msa0509190:CDS
CATGTCTGATTACGCTGTTA+TGG 0.364264 3_4:-57521943 Msa0509190:three_prime_UTR
TTCTCCTTGATCTCCCTTCA+TGG 0.368126 3_4:-57525083 Msa0509190:CDS
GATAGTGGCGGCTTGAACGG+GGG 0.370101 3_4:+57526801 None:intergenic
CCCTATGTACGAACACATTT+GGG 0.373541 3_4:+57524601 None:intergenic
CGCTGTTATGGATATGTTGT+TGG 0.376752 3_4:-57521931 Msa0509190:three_prime_UTR
TTGCCTAAGCTTCGAAGAAC+TGG 0.383379 3_4:-57525732 Msa0509190:CDS
GTTGAGGTTAATGCTTTGTT+GGG 0.388895 3_4:+57526901 None:intergenic
GTTTGGGATTGGAAGCGTTC+CGG 0.390910 3_4:+57526683 None:intergenic
GTGGTGACAGTGCAGAGATT+TGG 0.391096 3_4:-57521682 Msa0509190:three_prime_UTR
GGCATATTCATCCTCATCTA+TGG 0.399507 3_4:+57522008 None:intergenic
GTCTTTGTAGCTGCAGAGTA+AGG 0.400408 3_4:+57526777 None:intergenic
GTGTTGTAATGGTGGAGTGC+TGG 0.403643 3_4:-57521909 Msa0509190:three_prime_UTR
ATGTCATGGAGAAGGGAGTC+AGG 0.405545 3_4:-57523917 Msa0509190:CDS
AGGATTCCTCAATCCTGCTT+TGG 0.407237 3_4:+57525668 None:intergenic
ATGTCACTCACCGGCTGATA+AGG 0.410351 3_4:+57521728 None:intergenic
CAAAAGAATTCCATTTGAAA+GGG 0.416153 3_4:+57524860 None:intergenic
AGTGGGAGCAAACAAAATTT+GGG 0.417509 3_4:+57521592 None:intergenic
AGTATCTTTGTCGAGGTTTG+TGG 0.421561 3_4:+57526952 None:intergenic
TCTTCAATTTCTTCAACAAC+CGG 0.422064 3_4:+57522037 None:intergenic
AGTTGAGGTTAATGCTTTGT+TGG 0.423528 3_4:+57526900 None:intergenic
TCATTTACATCCCTTTCAAA+TGG 0.430625 3_4:-57524870 Msa0509190:CDS
ATTTCGAGGAGATTAGATTC+AGG 0.431126 3_4:-57523637 Msa0509190:intron
TTTGGTTATTTGTAGGTGCT+TGG 0.431263 3_4:-57526578 Msa0509190:intron
GAGTCTTCAAAGACACCTTC+AGG 0.436469 3_4:-57525582 Msa0509190:CDS
AATGTATTGATTGGCACGCC+GGG 0.448464 3_4:-57526404 Msa0509190:CDS
GGATAGTGGCGGCTTGAACG+GGG 0.450785 3_4:+57526800 None:intergenic
TTTAGCTGTTTGCTTTCTCA+TGG 0.452366 3_4:+57522113 None:intergenic
ATCCTCTGTGCCTGTCAACT+TGG 0.453170 3_4:+57521987 None:intergenic
TTTGGAAAGGTACTAGTCCT+TGG 0.453614 3_4:-57521664 Msa0509190:three_prime_UTR
TCTGTGAGAGCTTGAAGAAC+GGG 0.456416 3_4:+57526844 None:intergenic
AAGCCAGTTCTTCGAAGCTT+AGG 0.459046 3_4:+57525729 None:intergenic
ATATGTTGTTGGTGTTGTAA+TGG 0.461693 3_4:-57521920 Msa0509190:three_prime_UTR
TTTGGATTTCAAAAGCTTTG+AGG 0.461707 3_4:-57526348 Msa0509190:intron
GAGAGCTTGAAGAACGGGTT+CGG 0.462659 3_4:+57526849 None:intergenic
GATGAATATGCCAAGTTGAC+AGG 0.467389 3_4:-57521997 Msa0509190:CDS
ACAAAAGAATTCCATTTGAA+AGG 0.468025 3_4:+57524859 None:intergenic
ATGAAGAAAATTGAGGAAGA+AGG 0.468170 3_4:-57526431 Msa0509190:CDS
TAGAAGTCGAATTATGTTCA+AGG 0.469185 3_4:-57521486 Msa0509190:three_prime_UTR
GAAGGAGCAAATGTATTGAT+TGG 0.470143 3_4:-57526413 Msa0509190:CDS
GATTGCATGATATTATGAAT+AGG 0.472514 3_4:-57526379 Msa0509190:CDS
CTTTCCATGAAGGGAGATCA+AGG 0.478395 3_4:+57525079 None:intergenic
TAATGCTTTGTTGGGGAACT+CGG 0.478400 3_4:+57526909 None:intergenic
CCCAAATGTGTTCGTACATA+GGG 0.481660 3_4:-57524601 Msa0509190:CDS
TGTTGTTGGTGTTGTAATGG+TGG 0.484754 3_4:-57521917 Msa0509190:three_prime_UTR
GGCAAATTAGCCACGGGACA+TGG 0.486232 3_4:-57523740 Msa0509190:CDS
GGGGATAGTGGCGGCTTGAA+CGG 0.488716 3_4:+57526798 None:intergenic
TGTTTAGTCTGATAGGATGC+AGG 0.491537 3_4:-57521518 Msa0509190:three_prime_UTR
GTTGGGGAACTCGGAGTCCA+TGG 0.492465 3_4:+57526918 None:intergenic
GTGGAAGAGCTTGCCAAAGC+AGG 0.492512 3_4:-57525681 Msa0509190:CDS
GTTTGCTTTCTCATGGCAGT+AGG 0.493178 3_4:+57522120 None:intergenic
GTTAAATCAATGCTACTTGT+TGG 0.495004 3_4:-57526476 Msa0509190:CDS
AGTTAAAGATATCAATTTCG+AGG 0.496514 3_4:-57523651 Msa0509190:CDS
CAAGTGGAATGACGAAAGCT+AGG 0.496591 3_4:+57526719 None:intergenic
TGTTGAAGAAATTGAAGAAA+GGG 0.497161 3_4:-57522032 Msa0509190:CDS
GAAGTCGGTCCTCCGAACTC+TGG 0.497228 3_4:+57521773 None:intergenic
CCTGCTTCATCTTTCCATGA+AGG 0.498559 3_4:+57525069 None:intergenic
TATAACATCAGGTGCATTGT+CGG 0.498976 3_4:+57524359 None:intergenic
GTAACGAAAGTTCCAGAGTT+CGG 0.505651 3_4:-57521785 Msa0509190:three_prime_UTR
AGCAGATATGAAGAAAATTG+AGG 0.509076 3_4:-57526438 Msa0509190:CDS
TTGTTGAAGAAATTGAAGAA+AGG 0.513692 3_4:-57522033 Msa0509190:CDS
GCTCGAACTTCAACCCTCAC+AGG 0.515886 3_4:+57525648 None:intergenic
TAAACCTCGGGTATAACATC+AGG 0.516672 3_4:+57524348 None:intergenic
GCTGATAGACTATTAGATAT+GGG 0.519123 3_4:-57525789 Msa0509190:CDS
TGCTACTCAAACTCAGGCTG+TGG 0.524602 3_4:-57525700 Msa0509190:CDS
AACCTGGTGAGGTTTGGGAT+TGG 0.529734 3_4:+57526672 None:intergenic
TTCCAATCCCAAACCTCACC+AGG 0.530067 3_4:-57526674 Msa0509190:intron
ATTCTCTGCTACTCAAACTC+AGG 0.530389 3_4:-57525706 Msa0509190:CDS
GCTGCAGAGTAAGGGGATAG+TGG 0.534078 3_4:+57526786 None:intergenic
CGATTAATGTACATAGAAAG+TGG 0.534968 3_4:-57521701 Msa0509190:three_prime_UTR
TGTTGTCTTCTTATTACCAA+AGG 0.535024 3_4:-57524541 Msa0509190:intron
CTGCTTCATCTTTCCATGAA+GGG 0.535878 3_4:+57525070 None:intergenic
ACCTTCAGGTCTTCACATTG+AGG 0.536458 3_4:-57525568 Msa0509190:intron
TTGTGTTGACTATTGGGGAG+TGG 0.537431 3_4:-57525135 Msa0509190:CDS
GCATGATATTATGAATAGGA+TGG 0.542168 3_4:-57526375 Msa0509190:CDS
AAGAGTTGACGCAAGAATAC+CGG 0.542711 3_4:-57522056 Msa0509190:CDS
ATTGCAACTTCCTTTAGTGC+CGG 0.543669 3_4:-57523714 Msa0509190:CDS
TGAAGAACGGGTTCGGAGAG+TGG 0.543714 3_4:+57526856 None:intergenic
GGCTGATAAGGTCTCTCTAT+CGG 0.543754 3_4:+57521740 None:intergenic
ACCCAAATGTGTTCGTACAT+AGG 0.544504 3_4:-57524602 Msa0509190:CDS
GAACTCGGAGTCCATGGTTG+CGG 0.546229 3_4:+57526924 None:intergenic
AGATCGTGATGTCATGGAGA+AGG 0.548299 3_4:-57523925 Msa0509190:CDS
CGGCGAAGAATTTCGACAAG+TGG 0.548528 3_4:+57526703 None:intergenic
GAGTGATTATATCTCCTACA+AGG 0.549275 3_4:-57526556 Msa0509190:CDS
GTCTATCTTTCTCTGATCCA+AGG 0.550342 3_4:+57521647 None:intergenic
ACTGCTCGGCTGGGTAAACA+AGG 0.550811 3_4:-57524570 Msa0509190:CDS
GTCGCCGTCGATGCCGCCAC+CGG 0.552287 3_4:-57526754 Msa0509190:CDS
ATAGGGTTGGTCGAACTGCT+CGG 0.553877 3_4:-57524584 Msa0509190:CDS
AAATGTATTGATTGGCACGC+CGG 0.554629 3_4:-57526405 Msa0509190:CDS
GATACTGAACGCCGCAACCA+TGG 0.554925 3_4:-57526935 Msa0509190:exon
TCTTTGTAGCTGCAGAGTAA+GGG 0.556900 3_4:+57526778 None:intergenic
GGAACCGGTGGCGGCATCGA+CGG 0.557986 3_4:+57526750 None:intergenic
GTTGGTCGAACTGCTCGGCT+GGG 0.559137 3_4:-57524579 Msa0509190:CDS
TATATAGTCTGTCAGGGAGA+AGG 0.560987 3_4:-57524901 Msa0509190:intron
GTCTGTGAGAGCTTGAAGAA+CGG 0.568734 3_4:+57526843 None:intergenic
CATAACAGCGTAATCAGACA+TGG 0.570421 3_4:+57521944 None:intergenic
TAAACAAAGTGTCAAAGTCA+TGG 0.571095 3_4:-57521448 Msa0509190:three_prime_UTR
CACTTGTCGAAATTCTTCGC+CGG 0.571139 3_4:-57526702 Msa0509190:CDS
GATCGTGATGTCATGGAGAA+GGG 0.571489 3_4:-57523924 Msa0509190:CDS
TGGTGTAGACTGTATAGTGC+AGG 0.579703 3_4:-57524802 Msa0509190:intron
AGCTTGCCAAAGCAGGATTG+AGG 0.581011 3_4:-57525674 Msa0509190:CDS
ACCTCAATGTGAAGACCTGA+AGG 0.582539 3_4:+57525567 None:intergenic
TGTACGGATGTTGCAGCACG+TGG 0.584350 3_4:-57524837 Msa0509190:CDS
ATAAATCAAGAGAGAAACAA+AGG 0.586055 3_4:-57522221 Msa0509190:CDS
ACGAACACATTTGGGTCTTG+AGG 0.586361 3_4:+57524609 None:intergenic
AACAAAAGATCGTGATGTCA+TGG 0.590128 3_4:-57523931 Msa0509190:CDS
CTTTGTAGCTGCAGAGTAAG+GGG 0.590827 3_4:+57526779 None:intergenic
AACACATTTGGGTCTTGAGG+AGG 0.592214 3_4:+57524612 None:intergenic
TAAGCAGACAGTTGAAGATG+AGG 0.592692 3_4:-57522079 Msa0509190:CDS
GCTGTAATATACTAGTCCAC+TGG 0.593012 3_4:+57521868 None:intergenic
TGAAATTGGCAAATTAGCCA+CGG 0.593432 3_4:-57523747 Msa0509190:CDS
GAGCACATTCTCTCTTGAAG+AGG 0.594936 3_4:+57524381 None:intergenic
AAATCAATGCTACTTGTTGG+TGG 0.597917 3_4:-57526473 Msa0509190:CDS
GGCGTTCAGTATCTTTGTCG+AGG 0.597961 3_4:+57526945 None:intergenic
GAAATTGGCAAATTAGCCAC+GGG 0.598244 3_4:-57523746 Msa0509190:CDS
GCATCCTCACATGATTCTGT+TGG 0.598804 3_4:-57521847 Msa0509190:three_prime_UTR
TTTAACTGGTTCAAATCCCA+CGG 0.599568 3_4:+57523667 None:intergenic
CCTTCATGGAAAGATGAAGC+AGG 0.600565 3_4:-57525069 Msa0509190:intron
TGTGCTTGTGTTGACTATTG+GGG 0.604078 3_4:-57525140 Msa0509190:CDS
AGAAGCCTTTCAAAACAGAA+AGG 0.606204 3_4:+57525102 None:intergenic
AAGTGGAATGACGAAAGCTA+GGG 0.608754 3_4:+57526720 None:intergenic
GATAGAGAGACCTTATCAGC+CGG 0.617470 3_4:-57521738 Msa0509190:three_prime_UTR
CGCCACTCACTATCCACCGT+GGG 0.618119 3_4:-57523683 Msa0509190:CDS
AGTGATTATATCTCCTACAA+GGG 0.619719 3_4:-57526555 Msa0509190:CDS
AATCGGTAAATGTCACTCAC+CGG 0.624172 3_4:+57521719 None:intergenic
ATCGGCAACAAAATGGAAGT+CGG 0.624784 3_4:+57521758 None:intergenic
AGGAAATCTACAAGCTGTGA+CGG 0.627262 3_4:+57525290 None:intergenic
AATGTGTTCGTACATAGGGT+TGG 0.628554 3_4:-57524597 Msa0509190:CDS
AATGCTACTTGTTGGTGGAG+TGG 0.628643 3_4:-57526468 Msa0509190:CDS
GACAGTGCAGAGATTTGGAA+AGG 0.629243 3_4:-57521677 Msa0509190:three_prime_UTR
TGCACCTGATGTTATACCCG+AGG 0.631727 3_4:-57524352 Msa0509190:intron
GACATGTATACATCTTACAC+TGG 0.633670 3_4:-57521807 Msa0509190:three_prime_UTR
GCACGTGGACTTGACATACC+TGG 0.634273 3_4:-57524822 Msa0509190:CDS
GAAGAAAGGGACCATAGATG+AGG 0.634552 3_4:-57522019 Msa0509190:CDS
GAATGTTCTTAGATAACCAG+TGG 0.635946 3_4:-57521884 Msa0509190:three_prime_UTR
CTTGCAGTACTTGGAATGTG+AGG 0.636915 3_4:-57525324 Msa0509190:intron
AGAACGGGTTCGGAGAGTGG+TGG 0.641488 3_4:+57526859 None:intergenic
ATAATATCATGCAATCGCCC+CGG 0.643181 3_4:+57526386 None:intergenic
ATCCCACGGTGGATAGTGAG+TGG 0.643637 3_4:+57523681 None:intergenic
TTGAGGTTAATGCTTTGTTG+GGG 0.644922 3_4:+57526902 None:intergenic
CATCCTATCAGACTAAACAA+AGG 0.646152 3_4:+57521522 None:intergenic
AGGATTGAGGAATCCTGTGA+GGG 0.652822 3_4:-57525661 Msa0509190:CDS
TGTCATGGAGAAGGGAGTCA+GGG 0.653830 3_4:-57523916 Msa0509190:CDS
TTGCAATAAGCCATGTCCCG+TGG 0.654749 3_4:+57523730 None:intergenic
TGCACTATACAGTCTACACC+AGG 0.665445 3_4:+57524804 None:intergenic
CCTTTCAAAACAGAAAGGCG+AGG 0.674569 3_4:+57525107 None:intergenic
GCAGAGTAAGGGGATAGTGG+CGG 0.676114 3_4:+57526789 None:intergenic
GGAGAGGGAGGAACCTGGTG+AGG 0.681157 3_4:+57526661 None:intergenic
TAGGTCGGAGAAACGAGTTG+AGG 0.684963 3_4:+57526885 None:intergenic
ATGTATTGATTGGCACGCCG+GGG 0.688464 3_4:-57526403 Msa0509190:CDS
CAGGATTGAGGAATCCTGTG+AGG 0.689064 3_4:-57525662 Msa0509190:CDS
TGCCAAGTTGACAGGCACAG+AGG 0.710992 3_4:-57521989 Msa0509190:CDS
ACGAAAGTTCCAGAGTTCGG+AGG 0.713143 3_4:-57521782 Msa0509190:three_prime_UTR
GATGCCAACAGAATCATGTG+AGG 0.723756 3_4:+57521843 None:intergenic
ACGCCACTCACTATCCACCG+TGG 0.727058 3_4:-57523684 Msa0509190:CDS
CTGCTCGGCTGGGTAAACAA+GGG 0.728024 3_4:-57524569 Msa0509190:CDS
AACTGGTTCAAATCCCACGG+TGG 0.741727 3_4:+57523670 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAACTTCAAATTTTATA+GGG - chr3_4:57526099-57526118 Msa0509190:intron 10.0%
!! ATATTTCAGGATTTATTATT+TGG - chr3_4:57522396-57522415 Msa0509190:intron 15.0%
!!! ACATTATAATTTTTTTTGAG+CGG + chr3_4:57523088-57523107 None:intergenic 15.0%
!!! TTTAATTTTGAAAATAGAAG+TGG - chr3_4:57525252-57525271 Msa0509190:intron 15.0%
!! TACCTATAACTAAAAAAATA+GGG + chr3_4:57525756-57525775 None:intergenic 15.0%
!!! CTTAAAACTTCAAATTTTAT+AGG - chr3_4:57526098-57526117 Msa0509190:intron 15.0%
!! AATGATTAACCTAATTGAAT+TGG + chr3_4:57521713-57521732 None:intergenic 20.0%
!!! GTATAAATTTTAGAGAGAAT+AGG - chr3_4:57522017-57522036 Msa0509190:CDS 20.0%
!!! GTTAAGTTATCTTTAAAAAG+CGG - chr3_4:57522103-57522122 Msa0509190:CDS 20.0%
!! AGTAAAAGATAGAGTTTAAT+GGG + chr3_4:57522204-57522223 None:intergenic 20.0%
!! AAGTAAAAGATAGAGTTTAA+TGG + chr3_4:57522205-57522224 None:intergenic 20.0%
!! ACATAATTGAATGTAATGTA+AGG - chr3_4:57522268-57522287 Msa0509190:intron 20.0%
!!! TTTAAGATTCCTTATATTTG+TGG - chr3_4:57522464-57522483 Msa0509190:intron 20.0%
!! AATACATGAAACATCTTATA+TGG + chr3_4:57522935-57522954 None:intergenic 20.0%
!! ATGTTTCATGTATTACTAAT+AGG - chr3_4:57522941-57522960 Msa0509190:intron 20.0%
!! TAAAGTTCGACAAAAATAAT+GGG + chr3_4:57523390-57523409 None:intergenic 20.0%
!! TTTACTGTTTGTATACTTAT+TGG - chr3_4:57523406-57523425 Msa0509190:intron 20.0%
!!! TCTTTAAGCTTATCTTTTTA+TGG - chr3_4:57523875-57523894 Msa0509190:CDS 20.0%
!! TAAAATAAATCTAACAGTGA+AGG + chr3_4:57524241-57524260 None:intergenic 20.0%
!!! TTAAGTTTTATTGATTGTCT+AGG - chr3_4:57524269-57524288 Msa0509190:intron 20.0%
!!! TGATCATAATTTTGTTATCA+GGG + chr3_4:57524367-57524386 None:intergenic 20.0%
!!! TTGATCATAATTTTGTTATC+AGG + chr3_4:57524368-57524387 None:intergenic 20.0%
!! ATGAATATTGACAATTAGAA+AGG + chr3_4:57524752-57524771 None:intergenic 20.0%
!! AGATGTACAAAAGTTATATT+GGG - chr3_4:57525400-57525419 Msa0509190:intron 20.0%
!!! TATTATTGTTACATTTTCCA+AGG - chr3_4:57525454-57525473 Msa0509190:intron 20.0%
!!! ATTATTGTTACATTTTCCAA+GGG - chr3_4:57525455-57525474 Msa0509190:intron 20.0%
!! TATGAAAATCAAAATTGAGT+TGG - chr3_4:57525693-57525712 Msa0509190:CDS 20.0%
!!! ATCCCTATTTTTTTAGTTAT+AGG - chr3_4:57525751-57525770 Msa0509190:CDS 20.0%
!! CTACCTATAACTAAAAAAAT+AGG + chr3_4:57525757-57525776 None:intergenic 20.0%
!! TTAAAAAGACTATAGATAGT+GGG + chr3_4:57526771-57526790 None:intergenic 20.0%
!! ATTAAAAAGACTATAGATAG+TGG + chr3_4:57526772-57526791 None:intergenic 20.0%
! CACTTCATTATCACATAAAT+TGG + chr3_4:57521745-57521764 None:intergenic 25.0%
!! TTATGTGATAATGAAGTGTT+TGG - chr3_4:57521747-57521766 Msa0509190:three_prime_UTR 25.0%
! GATTGCATGATATTATGAAT+AGG - chr3_4:57521964-57521983 Msa0509190:exon 25.0%
!! TATGAATAGGATGGATATTT+TGG - chr3_4:57521977-57521996 Msa0509190:exon 25.0%
! TTAAAAAGCGGTTACAAATT+AGG - chr3_4:57522115-57522134 Msa0509190:CDS 25.0%
! GTAAAAGATAGAGTTTAATG+GGG + chr3_4:57522203-57522222 None:intergenic 25.0%
! ATTTGGGTATTAATAGGAAT+AGG - chr3_4:57522488-57522507 Msa0509190:intron 25.0%
! GTAAAGTTCGACAAAAATAA+TGG + chr3_4:57523391-57523410 None:intergenic 25.0%
!! ATTTTTCTATATAGTCTGTC+AGG - chr3_4:57523435-57523454 Msa0509190:intron 25.0%
!! TTTTTCTATATAGTCTGTCA+GGG - chr3_4:57523436-57523455 Msa0509190:intron 25.0%
! CAAAAGAATTCCATTTGAAA+GGG + chr3_4:57523486-57523505 None:intergenic 25.0%
! ACAAAAGAATTCCATTTGAA+AGG + chr3_4:57523487-57523506 None:intergenic 25.0%
!! AAATGGAATTCTTTTGTGTA+CGG - chr3_4:57523490-57523509 Msa0509190:intron 25.0%
! TCAAATTGAAAAATAAACCG+TGG - chr3_4:57523627-57523646 Msa0509190:intron 25.0%
! ATGAAGAAATATTTGAACCA+CGG + chr3_4:57523647-57523666 None:intergenic 25.0%
! TATTTCTTCATATTTACCAC+TGG - chr3_4:57523656-57523675 Msa0509190:CDS 25.0%
! ATTAATCTATGTCAATGTGT+AGG - chr3_4:57523901-57523920 Msa0509190:CDS 25.0%
! TCGAAATTGATATCTTTAAC+TGG + chr3_4:57524693-57524712 None:intergenic 25.0%
! AGTTAAAGATATCAATTTCG+AGG - chr3_4:57524692-57524711 Msa0509190:intron 25.0%
! TAATATAGAAGCTAATCTCA+CGG + chr3_4:57524880-57524899 None:intergenic 25.0%
!!! AGATTAGCTTCTATATTACT+TGG - chr3_4:57524882-57524901 Msa0509190:CDS 25.0%
! TTTCATCTTGTTGAAGATAT+GGG + chr3_4:57525070-57525089 None:intergenic 25.0%
! CTTTATCTTGTTAGAAGATA+TGG + chr3_4:57525124-57525143 None:intergenic 25.0%
! CATATCTTCTAACAAGATAA+AGG - chr3_4:57525122-57525141 Msa0509190:CDS 25.0%
!!! AGCTTGTTATGCTTAAAATA+TGG - chr3_4:57525185-57525204 Msa0509190:intron 25.0%
! TTAAAATATGGACAATGCAA+AGG - chr3_4:57525197-57525216 Msa0509190:intron 25.0%
! TAAAATATGGACAATGCAAA+GGG - chr3_4:57525198-57525217 Msa0509190:intron 25.0%
! TTAAAATTCAGCACAAGTTT+AGG + chr3_4:57525227-57525246 None:intergenic 25.0%
!! TATAACTTTTGTACATCTGA+TGG + chr3_4:57525398-57525417 None:intergenic 25.0%
! CAGATGTACAAAAGTTATAT+TGG - chr3_4:57525399-57525418 Msa0509190:intron 25.0%
!! TTATTGTTACATTTTCCAAG+GGG - chr3_4:57525456-57525475 Msa0509190:intron 25.0%
!!! GAGTTTTGATCAATAAAATG+AGG - chr3_4:57526009-57526028 Msa0509190:intron 25.0%
! ATAAATCAAGAGAGAAACAA+AGG - chr3_4:57526122-57526141 Msa0509190:intron 25.0%
! TTGTTGAAGAAATTGAAGAA+AGG - chr3_4:57526310-57526329 Msa0509190:intron 25.0%
! TGTTGAAGAAATTGAAGAAA+GGG - chr3_4:57526311-57526330 Msa0509190:intron 25.0%
!! TATACATGTCAGATCTTTTA+GGG + chr3_4:57526526-57526545 None:intergenic 25.0%
! CACTTTCTATGTACATTAAT+CGG + chr3_4:57526644-57526663 None:intergenic 25.0%
AACCTAATTGAATTGGAATG+AGG + chr3_4:57521706-57521725 None:intergenic 30.0%
! TGAAGTGTTTGGTTATTTGT+AGG - chr3_4:57521758-57521777 Msa0509190:three_prime_UTR 30.0%
AGTGATTATATCTCCTACAA+GGG - chr3_4:57521788-57521807 Msa0509190:three_prime_UTR 30.0%
TTCGCTAAAGTCGAAATAAA+AGG + chr3_4:57521846-57521865 None:intergenic 30.0%
! GTTAAATCAATGCTACTTGT+TGG - chr3_4:57521867-57521886 Msa0509190:three_prime_UTR 30.0%
AGCAGATATGAAGAAAATTG+AGG - chr3_4:57521905-57521924 Msa0509190:three_prime_UTR 30.0%
ATGAAGAAAATTGAGGAAGA+AGG - chr3_4:57521912-57521931 Msa0509190:three_prime_UTR 30.0%
GCATGATATTATGAATAGGA+TGG - chr3_4:57521968-57521987 Msa0509190:exon 30.0%
TTTGGATTTCAAAAGCTTTG+AGG - chr3_4:57521995-57522014 Msa0509190:CDS 30.0%
TCCAATAAGGATGTAGTAAT+TGG - chr3_4:57522078-57522097 Msa0509190:CDS 30.0%
ACCAATTACTACATCCTTAT+TGG + chr3_4:57522082-57522101 None:intergenic 30.0%
TTACCAATGAAACACAGAAA+TGG - chr3_4:57522226-57522245 Msa0509190:CDS 30.0%
TTGAATGTAATGTAAGGTGT+CGG - chr3_4:57522274-57522293 Msa0509190:intron 30.0%
!! TGTTCTAGAGAGAATATTTC+AGG - chr3_4:57522383-57522402 Msa0509190:intron 30.0%
GGATTTATTATTTGGTCATG+TGG - chr3_4:57522404-57522423 Msa0509190:intron 30.0%
TTCCTTATATTTGTGGCATT+TGG - chr3_4:57522471-57522490 Msa0509190:intron 30.0%
TCCTTATATTTGTGGCATTT+GGG - chr3_4:57522472-57522491 Msa0509190:intron 30.0%
GCTGATAGACTATTAGATAT+GGG - chr3_4:57522554-57522573 Msa0509190:intron 30.0%
! ACATCTAATCTCTAGTTTAC+TGG + chr3_4:57522819-57522838 None:intergenic 30.0%
TAAACTAGAGATTAGATGTG+TGG - chr3_4:57522820-57522839 Msa0509190:intron 30.0%
!!! GTAGAATCGCTTCATTTTTT+TGG - chr3_4:57522867-57522886 Msa0509190:intron 30.0%
AAGCTCGAAAAGAAAAGAAA+AGG + chr3_4:57523002-57523021 None:intergenic 30.0%
TTTCAAAACTGACAAATGCT+TGG + chr3_4:57523321-57523340 None:intergenic 30.0%
TCATTTACATCCCTTTCAAA+TGG - chr3_4:57523473-57523492 Msa0509190:intron 30.0%
! ATTTTCTATAAGTGTTCCAG+TGG + chr3_4:57523675-57523694 None:intergenic 30.0%
TGTTGTCTTCTTATTACCAA+AGG - chr3_4:57523802-57523821 Msa0509190:intron 30.0%
! TACTGTGTTGTCATGTTTTA+TGG - chr3_4:57524042-57524061 Msa0509190:intron 30.0%
! TCATGTTTTATGGATGCAAT+AGG - chr3_4:57524052-57524071 Msa0509190:intron 30.0%
!! TAATGTGCTGATTACCTTAT+AGG - chr3_4:57524190-57524209 Msa0509190:intron 30.0%
ATTGATTGTCTAGGTAAACA+CGG - chr3_4:57524278-57524297 Msa0509190:intron 30.0%
TTGTTATCAGGGAATTGAAA+GGG + chr3_4:57524356-57524375 None:intergenic 30.0%
! TTTGTTATCAGGGAATTGAA+AGG + chr3_4:57524357-57524376 None:intergenic 30.0%
! ATCACTGCTCTTATATTTTC+AGG - chr3_4:57524483-57524502 Msa0509190:intron 30.0%
AATATAGAAGCTAATCTCAC+GGG + chr3_4:57524879-57524898 None:intergenic 30.0%
ATTTGTTTCCCTGTTCAATT+AGG - chr3_4:57524916-57524935 Msa0509190:intron 30.0%
CTTTCATCTTGTTGAAGATA+TGG + chr3_4:57525071-57525090 None:intergenic 30.0%
! TTTTAAGCATAACAAGCTCT+CGG + chr3_4:57525183-57525202 None:intergenic 30.0%
TGTTAGGTGAAACTCATTAA+TGG - chr3_4:57525357-57525376 Msa0509190:intron 30.0%
ATTCAAATTGAGCTTCAGAT+TGG - chr3_4:57525668-57525687 Msa0509190:CDS 30.0%
TTCAAATTGAGCTTCAGATT+GGG - chr3_4:57525669-57525688 Msa0509190:CDS 30.0%
! TTCTTCAAGATACTTTGAAG+AGG - chr3_4:57525784-57525803 Msa0509190:CDS 30.0%
! TCTTCAAGATACTTTGAAGA+GGG - chr3_4:57525785-57525804 Msa0509190:CDS 30.0%
ATCAAGATCAACAAAGAACT+TGG + chr3_4:57525840-57525859 None:intergenic 30.0%
TTCTTTGTTGATCTTGATTG+AGG - chr3_4:57525842-57525861 Msa0509190:intron 30.0%
TCTTTGTTGATCTTGATTGA+GGG - chr3_4:57525843-57525862 Msa0509190:intron 30.0%
TCGAAAGACAATACGAATAT+AGG + chr3_4:57525920-57525939 None:intergenic 30.0%
TGTACTTGGAATAAGTTAGA+AGG + chr3_4:57525947-57525966 None:intergenic 30.0%
!! TCCAAGTACACTTTTTAACT+CGG - chr3_4:57525957-57525976 Msa0509190:intron 30.0%
!!! CTCTTTGGTTTTTTAGGTTT+TGG + chr3_4:57526190-57526209 None:intergenic 30.0%
TCTTCAATTTCTTCAACAAC+CGG + chr3_4:57526309-57526328 None:intergenic 30.0%
!! ATATGTTGTTGGTGTTGTAA+TGG - chr3_4:57526423-57526442 Msa0509190:CDS 30.0%
! ATACATGTCAGATCTTTTAG+GGG + chr3_4:57526525-57526544 None:intergenic 30.0%
! GTATACATGTCAGATCTTTT+AGG + chr3_4:57526527-57526546 None:intergenic 30.0%
CGATTAATGTACATAGAAAG+TGG - chr3_4:57526642-57526661 Msa0509190:intron 30.0%
TAGAAGTCGAATTATGTTCA+AGG - chr3_4:57526857-57526876 Msa0509190:CDS 30.0%
! TAAACAAAGTGTCAAAGTCA+TGG - chr3_4:57526895-57526914 Msa0509190:CDS 30.0%
! TTGAGGTTAATGCTTTGTTG+GGG + chr3_4:57521444-57521463 None:intergenic 35.0%
! GTTGAGGTTAATGCTTTGTT+GGG + chr3_4:57521445-57521464 None:intergenic 35.0%
AGTTGAGGTTAATGCTTTGT+TGG + chr3_4:57521446-57521465 None:intergenic 35.0%
ATTGAATTGGAATGAGGAGA+GGG + chr3_4:57521700-57521719 None:intergenic 35.0%
AATTGAATTGGAATGAGGAG+AGG + chr3_4:57521701-57521720 None:intergenic 35.0%
CTCCTCATTCCAATTCAATT+AGG - chr3_4:57521701-57521720 Msa0509190:three_prime_UTR 35.0%
TTTGGTTATTTGTAGGTGCT+TGG - chr3_4:57521765-57521784 Msa0509190:three_prime_UTR 35.0%
GAGTGATTATATCTCCTACA+AGG - chr3_4:57521787-57521806 Msa0509190:three_prime_UTR 35.0%
! AAATCAATGCTACTTGTTGG+TGG - chr3_4:57521870-57521889 Msa0509190:three_prime_UTR 35.0%
! GAAGGAGCAAATGTATTGAT+TGG - chr3_4:57521930-57521949 Msa0509190:three_prime_UTR 35.0%
GGTTACAAATTAGGCTTAGA+TGG - chr3_4:57522124-57522143 Msa0509190:CDS 35.0%
GCAATATAGTGTGTTCCTAT+TGG - chr3_4:57522146-57522165 Msa0509190:CDS 35.0%
! TTGCCATTTCTGTGTTTCAT+TGG + chr3_4:57522232-57522251 None:intergenic 35.0%
! ATGCTTTCAATCAGAAGTGT+CGG - chr3_4:57522322-57522341 Msa0509190:intron 35.0%
ACCCAAATGCCACAAATATA+AGG + chr3_4:57522476-57522495 None:intergenic 35.0%
TGTGGCATTTGGGTATTAAT+AGG - chr3_4:57522482-57522501 Msa0509190:intron 35.0%
!!! GTGTGTGCAGATTTTGATTT+TGG - chr3_4:57522526-57522545 Msa0509190:intron 35.0%
!!! GCAGATTTTGATTTTGGATG+AGG - chr3_4:57522532-57522551 Msa0509190:intron 35.0%
GGCTGATAGACTATTAGATA+TGG - chr3_4:57522553-57522572 Msa0509190:intron 35.0%
TGATAGCATTTATCTGCTTC+TGG + chr3_4:57522583-57522602 None:intergenic 35.0%
! ACATTGAGGTATTACCTATG+TGG - chr3_4:57522789-57522808 Msa0509190:intron 35.0%
!! TTTTTGAGCGGTTCTTAACA+AGG + chr3_4:57523076-57523095 None:intergenic 35.0%
!! TTGTGCTTGTGTTGACTATT+GGG - chr3_4:57523202-57523221 Msa0509190:intron 35.0%
AGAAGCCTTTCAAAACAGAA+AGG + chr3_4:57523244-57523263 None:intergenic 35.0%
ATCATACTGTGGAATAACAG+AGG + chr3_4:57523711-57523730 None:intergenic 35.0%
AATCTATGTCAATGTGTAGG+AGG - chr3_4:57523904-57523923 Msa0509190:CDS 35.0%
TATAACATCAGGTGCATTGT+CGG + chr3_4:57523987-57524006 None:intergenic 35.0%
TTATACCCGAGGTTTATTCT+CGG - chr3_4:57524002-57524021 Msa0509190:intron 35.0%
TAAAAGCCGAGAATAAACCT+CGG + chr3_4:57524011-57524030 None:intergenic 35.0%
! TGTTTTATGGATGCAATAGG+AGG - chr3_4:57524055-57524074 Msa0509190:intron 35.0%
TCGATTGACAACCATAACAA+GGG + chr3_4:57524083-57524102 None:intergenic 35.0%
ATCGATTGACAACCATAACA+AGG + chr3_4:57524084-57524103 None:intergenic 35.0%
GAACTACCGTAATAGTATTC+CGG - chr3_4:57524128-57524147 Msa0509190:intron 35.0%
ACTCTACCGGAATACTATTA+CGG + chr3_4:57524137-57524156 None:intergenic 35.0%
!! TATTTCCATGTTGACTCTAC+CGG + chr3_4:57524150-57524169 None:intergenic 35.0%
CACATTAGTATGTTGTAGCA+GGG + chr3_4:57524177-57524196 None:intergenic 35.0%
TGATTACCTTATAGGCTGAA+TGG - chr3_4:57524198-57524217 Msa0509190:intron 35.0%
CATGTTCACAAAGAAGAACT+GGG + chr3_4:57524312-57524331 None:intergenic 35.0%
TCATGTTCACAAAGAAGAAC+TGG + chr3_4:57524313-57524332 None:intergenic 35.0%
!! AATGTTTTAGATTCGTTCCG+CGG - chr3_4:57524388-57524407 Msa0509190:CDS 35.0%
AACAAAAGATCGTGATGTCA+TGG - chr3_4:57524412-57524431 Msa0509190:CDS 35.0%
AGGTGGAAAGAACTTGAAAT+TGG - chr3_4:57524582-57524601 Msa0509190:CDS 35.0%
TGAAATTGGCAAATTAGCCA+CGG - chr3_4:57524596-57524615 Msa0509190:CDS 35.0%
! TTTAACTGGTTCAAATCCCA+CGG + chr3_4:57524679-57524698 None:intergenic 35.0%
ATTTCGAGGAGATTAGATTC+AGG - chr3_4:57524706-57524725 Msa0509190:intron 35.0%
CTGCTAATCCTAATTGAACA+GGG + chr3_4:57524927-57524946 None:intergenic 35.0%
ACTGCTAATCCTAATTGAAC+AGG + chr3_4:57524928-57524947 None:intergenic 35.0%
! AGTCTTGTCTCCCTATAAAT+AGG - chr3_4:57524945-57524964 Msa0509190:intron 35.0%
GTCTTGTCTCCCTATAAATA+GGG - chr3_4:57524946-57524965 Msa0509190:intron 35.0%
TCTTGTCTCCCTATAAATAG+GGG - chr3_4:57524947-57524966 Msa0509190:intron 35.0%
AGCAGTAACCCCTATTTATA+GGG + chr3_4:57524958-57524977 None:intergenic 35.0%
AAGCAGTAACCCCTATTTAT+AGG + chr3_4:57524959-57524978 None:intergenic 35.0%
!! TACTGCTTAACCTTTTGGAA+TGG - chr3_4:57524971-57524990 Msa0509190:intron 35.0%
GATAATCAGACCATTCCAAA+AGG + chr3_4:57524984-57525003 None:intergenic 35.0%
AGCTTATTATATCTAGCACG+CGG - chr3_4:57525155-57525174 Msa0509190:CDS 35.0%
TTTAAGCATAACAAGCTCTC+GGG + chr3_4:57525182-57525201 None:intergenic 35.0%
AAATTCAGCACAAGTTTAGG+TGG + chr3_4:57525224-57525243 None:intergenic 35.0%
TTTGAAAATAGAAGTGGCCA+TGG - chr3_4:57525258-57525277 Msa0509190:intron 35.0%
ATAAGTAGGAGTTTGATCCA+TGG + chr3_4:57525278-57525297 None:intergenic 35.0%
GGATCAAACTCCTACTTATT+TGG - chr3_4:57525279-57525298 Msa0509190:CDS 35.0%
GTCTCTATGACCAAATAAGT+AGG + chr3_4:57525292-57525311 None:intergenic 35.0%
! TGAGCTCAAGTACTTTTCTA+TGG + chr3_4:57525546-57525565 None:intergenic 35.0%
TCAAATTGAGCTTCAGATTG+GGG - chr3_4:57525670-57525689 Msa0509190:CDS 35.0%
! CTTCAAGATACTTTGAAGAG+GGG - chr3_4:57525786-57525805 Msa0509190:CDS 35.0%
TGATCTTGATTGAGGGATTA+TGG - chr3_4:57525850-57525869 Msa0509190:intron 35.0%
GATCTTGATTGAGGGATTAT+GGG - chr3_4:57525851-57525870 Msa0509190:intron 35.0%
! ACCGAGTTAAAAAGTGTACT+TGG + chr3_4:57525961-57525980 None:intergenic 35.0%
!!! GGAGTTCTCTTTGGTTTTTT+AGG + chr3_4:57526196-57526215 None:intergenic 35.0%
TTTAGCTGTTTGCTTTCTCA+TGG + chr3_4:57526233-57526252 None:intergenic 35.0%
GAATGTTCTTAGATAACCAG+TGG - chr3_4:57526459-57526478 Msa0509190:CDS 35.0%
GACATGTATACATCTTACAC+TGG - chr3_4:57526536-57526555 Msa0509190:CDS 35.0%
AGTGGGAGCAAACAAAATTT+GGG + chr3_4:57526754-57526773 None:intergenic 35.0%
TAGTGGGAGCAAACAAAATT+TGG + chr3_4:57526755-57526774 None:intergenic 35.0%
! GTTCCTTTGTTTAGTCTGAT+AGG - chr3_4:57526818-57526837 Msa0509190:CDS 35.0%
CATCCTATCAGACTAAACAA+AGG + chr3_4:57526824-57526843 None:intergenic 35.0%
! TAATGCTTTGTTGGGGAACT+CGG + chr3_4:57521437-57521456 None:intergenic 40.0%
TCTTTGTAGCTGCAGAGTAA+GGG + chr3_4:57521568-57521587 None:intergenic 40.0%
AAGTGGAATGACGAAAGCTA+GGG + chr3_4:57521626-57521645 None:intergenic 40.0%
!! AAATGTATTGATTGGCACGC+CGG - chr3_4:57521938-57521957 Msa0509190:three_prime_UTR 40.0%
ATAATATCATGCAATCGCCC+CGG + chr3_4:57521960-57521979 None:intergenic 40.0%
! TTTTACGCTGACGTCCAATA+AGG - chr3_4:57522065-57522084 Msa0509190:CDS 40.0%
AGTGTGTTCCTATTGGATGT+CGG - chr3_4:57522153-57522172 Msa0509190:CDS 40.0%
!! ATTTTGCACCGACATCCAAT+AGG + chr3_4:57522164-57522183 None:intergenic 40.0%
! CTTCTGATTGAAAGCATGTC+TGG + chr3_4:57522319-57522338 None:intergenic 40.0%
ATTCTCTGCTACTCAAACTC+AGG - chr3_4:57522637-57522656 Msa0509190:intron 40.0%
AGGAAATCTACAAGCTGTGA+CGG + chr3_4:57523056-57523075 None:intergenic 40.0%
!! CTTGTGCTTGTGTTGACTAT+TGG - chr3_4:57523201-57523220 Msa0509190:intron 40.0%
!! TGTGCTTGTGTTGACTATTG+GGG - chr3_4:57523203-57523222 Msa0509190:intron 40.0%
CTGCTTCATCTTTCCATGAA+GGG + chr3_4:57523276-57523295 None:intergenic 40.0%
TATATAGTCTGTCAGGGAGA+AGG - chr3_4:57523442-57523461 Msa0509190:intron 40.0%
ACCCAAATGTGTTCGTACAT+AGG - chr3_4:57523741-57523760 Msa0509190:CDS 40.0%
CCCTATGTACGAACACATTT+GGG + chr3_4:57523745-57523764 None:intergenic 40.0%
CCCAAATGTGTTCGTACATA+GGG - chr3_4:57523742-57523761 Msa0509190:CDS 40.0%
ACCCTATGTACGAACACATT+TGG + chr3_4:57523746-57523765 None:intergenic 40.0%
AATGTGTTCGTACATAGGGT+TGG - chr3_4:57523746-57523765 Msa0509190:CDS 40.0%
GATACTTGTGACAACACCTT+TGG + chr3_4:57523821-57523840 None:intergenic 40.0%
TAAACCTCGGGTATAACATC+AGG + chr3_4:57523998-57524017 None:intergenic 40.0%
AAAAGCCGAGAATAAACCTC+GGG + chr3_4:57524010-57524029 None:intergenic 40.0%
AATAGGAGGATCCCTTGTTA+TGG - chr3_4:57524069-57524088 Msa0509190:intron 40.0%
GCACATTAGTATGTTGTAGC+AGG + chr3_4:57524178-57524197 None:intergenic 40.0%
TGAACTGTTCTCACTCTTAC+AGG - chr3_4:57524562-57524581 Msa0509190:CDS 40.0%
GAAATTGGCAAATTAGCCAC+GGG - chr3_4:57524597-57524616 Msa0509190:CDS 40.0%
ATTGCAACTTCCTTTAGTGC+CGG - chr3_4:57524629-57524648 Msa0509190:intron 40.0%
AGCTCACGAATGAGCTTATT+AGG - chr3_4:57525089-57525108 Msa0509190:CDS 40.0%
AAGTGAGAAGGTTCTTGTCA+TGG + chr3_4:57525332-57525351 None:intergenic 40.0%
! TTGTTACATTTTCCAAGGGG+AGG - chr3_4:57525459-57525478 Msa0509190:intron 40.0%
! TGTTACATTTTCCAAGGGGA+GGG - chr3_4:57525460-57525479 Msa0509190:intron 40.0%
! AAGATACTTTGAAGAGGGGA+GGG - chr3_4:57525790-57525809 Msa0509190:CDS 40.0%
TGGCTTCTTTCTTTACTTGC+AGG + chr3_4:57526156-57526175 None:intergenic 40.0%
!!! AGGTTTTGGCTCTTTCTCTT+TGG + chr3_4:57526176-57526195 None:intergenic 40.0%
TAAGCAGACAGTTGAAGATG+AGG - chr3_4:57526264-57526283 Msa0509190:intron 40.0%
AAGAGTTGACGCAAGAATAC+CGG - chr3_4:57526287-57526306 Msa0509190:intron 40.0%
GGCATATTCATCCTCATCTA+TGG + chr3_4:57526338-57526357 None:intergenic 40.0%
! GATGAATATGCCAAGTTGAC+AGG - chr3_4:57526346-57526365 Msa0509190:intron 40.0%
CATAACAGCGTAATCAGACA+TGG + chr3_4:57526402-57526421 None:intergenic 40.0%
CATGTCTGATTACGCTGTTA+TGG - chr3_4:57526400-57526419 Msa0509190:CDS 40.0%
CGCTGTTATGGATATGTTGT+TGG - chr3_4:57526412-57526431 Msa0509190:CDS 40.0%
!! TGTTGTTGGTGTTGTAATGG+TGG - chr3_4:57526426-57526445 Msa0509190:CDS 40.0%
GCTGTAATATACTAGTCCAC+TGG + chr3_4:57526478-57526497 None:intergenic 40.0%
GTAACGAAAGTTCCAGAGTT+CGG - chr3_4:57526558-57526577 Msa0509190:CDS 40.0%
ATCGGCAACAAAATGGAAGT+CGG + chr3_4:57526588-57526607 None:intergenic 40.0%
TCTCTCTATCGGCAACAAAA+TGG + chr3_4:57526595-57526614 None:intergenic 40.0%
AATCGGTAAATGTCACTCAC+CGG + chr3_4:57526627-57526646 None:intergenic 40.0%
!! TTTGGAAAGGTACTAGTCCT+TGG - chr3_4:57526679-57526698 Msa0509190:CDS 40.0%
GTCTATCTTTCTCTGATCCA+AGG + chr3_4:57526699-57526718 None:intergenic 40.0%
TGTTTAGTCTGATAGGATGC+AGG - chr3_4:57526825-57526844 Msa0509190:CDS 40.0%
TCTGTGAGAGCTTGAAGAAC+GGG + chr3_4:57521502-57521521 None:intergenic 45.0%
GTCTGTGAGAGCTTGAAGAA+CGG + chr3_4:57521503-57521522 None:intergenic 45.0%
CTTTGTAGCTGCAGAGTAAG+GGG + chr3_4:57521567-57521586 None:intergenic 45.0%
GTCTTTGTAGCTGCAGAGTA+AGG + chr3_4:57521569-57521588 None:intergenic 45.0%
! GACGAAAGCTAGGGTTTTAC+CGG + chr3_4:57521617-57521636 None:intergenic 45.0%
CAAGTGGAATGACGAAAGCT+AGG + chr3_4:57521627-57521646 None:intergenic 45.0%
CACTTGTCGAAATTCTTCGC+CGG - chr3_4:57521641-57521660 Msa0509190:three_prime_UTR 45.0%
! AATGCTACTTGTTGGTGGAG+TGG - chr3_4:57521875-57521894 Msa0509190:three_prime_UTR 45.0%
!! AATGTATTGATTGGCACGCC+GGG - chr3_4:57521939-57521958 Msa0509190:three_prime_UTR 45.0%
!! GTAATGTAAGGTGTCGGTGT+CGG - chr3_4:57522280-57522299 Msa0509190:intron 45.0%
!! TAATGTAAGGTGTCGGTGTC+GGG - chr3_4:57522281-57522300 Msa0509190:intron 45.0%
!! CTTTCAATCAGAAGTGTCGG+TGG - chr3_4:57522325-57522344 Msa0509190:intron 45.0%
TTGCCTAAGCTTCGAAGAAC+TGG - chr3_4:57522611-57522630 Msa0509190:intron 45.0%
AAGCCAGTTCTTCGAAGCTT+AGG + chr3_4:57522617-57522636 None:intergenic 45.0%
AGGATTCCTCAATCCTGCTT+TGG + chr3_4:57522678-57522697 None:intergenic 45.0%
AGGATTGAGGAATCCTGTGA+GGG - chr3_4:57522682-57522701 Msa0509190:intron 45.0%
GAGTCTTCAAAGACACCTTC+AGG - chr3_4:57522761-57522780 Msa0509190:intron 45.0%
ACCTTCAGGTCTTCACATTG+AGG - chr3_4:57522775-57522794 Msa0509190:intron 45.0%
ACCTCAATGTGAAGACCTGA+AGG + chr3_4:57522779-57522798 None:intergenic 45.0%
AGTTTACTGGCATGCCACAT+AGG + chr3_4:57522806-57522825 None:intergenic 45.0%
!! TGGATTATAGTAAGAGCGCC+AGG + chr3_4:57522915-57522934 None:intergenic 45.0%
!! CTTTTCGAGCTTGCAGTACT+TGG - chr3_4:57523010-57523029 Msa0509190:intron 45.0%
CTTGCAGTACTTGGAATGTG+AGG - chr3_4:57523019-57523038 Msa0509190:intron 45.0%
!! TTGTGTTGACTATTGGGGAG+TGG - chr3_4:57523208-57523227 Msa0509190:intron 45.0%
CCTTTCAAAACAGAAAGGCG+AGG + chr3_4:57523239-57523258 None:intergenic 45.0%
!! CCTCGCCTTTCTGTTTTGAA+AGG - chr3_4:57523236-57523255 Msa0509190:intron 45.0%
TTCTCCTTGATCTCCCTTCA+TGG - chr3_4:57523260-57523279 Msa0509190:intron 45.0%
CTTTCCATGAAGGGAGATCA+AGG + chr3_4:57523267-57523286 None:intergenic 45.0%
CCTGCTTCATCTTTCCATGA+AGG + chr3_4:57523277-57523296 None:intergenic 45.0%
CCTTCATGGAAAGATGAAGC+AGG - chr3_4:57523274-57523293 Msa0509190:intron 45.0%
TGCACTATACAGTCTACACC+AGG + chr3_4:57523542-57523561 None:intergenic 45.0%
TGGTGTAGACTGTATAGTGC+AGG - chr3_4:57523541-57523560 Msa0509190:intron 45.0%
TCTTGAGGAGGATCATACTG+TGG + chr3_4:57523722-57523741 None:intergenic 45.0%
AACACATTTGGGTCTTGAGG+AGG + chr3_4:57523734-57523753 None:intergenic 45.0%
ACGAACACATTTGGGTCTTG+AGG + chr3_4:57523737-57523756 None:intergenic 45.0%
GAGCACATTCTCTCTTGAAG+AGG + chr3_4:57523965-57523984 None:intergenic 45.0%
GTATTCCGGTAGAGTCAACA+TGG - chr3_4:57524142-57524161 Msa0509190:intron 45.0%
GATCAGCCATTCAGCCTATA+AGG + chr3_4:57524207-57524226 None:intergenic 45.0%
TCACAAAGAAGAACTGGGAC+TGG + chr3_4:57524307-57524326 None:intergenic 45.0%
! ATCACGATCTTTTGTTGCCG+CGG + chr3_4:57524408-57524427 None:intergenic 45.0%
AGATCGTGATGTCATGGAGA+AGG - chr3_4:57524418-57524437 Msa0509190:CDS 45.0%
GATCGTGATGTCATGGAGAA+GGG - chr3_4:57524419-57524438 Msa0509190:CDS 45.0%
ACTGTTCTCACTCTTACAGG+TGG - chr3_4:57524565-57524584 Msa0509190:CDS 45.0%
! CGTTTTATCTCCGGCACTAA+AGG + chr3_4:57524642-57524661 None:intergenic 45.0%
! AGTGAGTGGCGTTTTATCTC+CGG + chr3_4:57524651-57524670 None:intergenic 45.0%
! GGGGTTACTGCTTAACCTTT+TGG - chr3_4:57524966-57524985 Msa0509190:intron 45.0%
CCTAACAGCTTGAAGTGAGA+AGG + chr3_4:57525344-57525363 None:intergenic 45.0%
CCTTCTCACTTCAAGCTGTT+AGG - chr3_4:57525341-57525360 Msa0509190:intron 45.0%
AAGTACTTGAGCTCAGCAGT+TGG - chr3_4:57525551-57525570 Msa0509190:intron 45.0%
! CAAGATACTTTGAAGAGGGG+AGG - chr3_4:57525789-57525808 Msa0509190:CDS 45.0%
CTTGATTGAGGGATTATGGG+TGG - chr3_4:57525854-57525873 Msa0509190:intron 45.0%
GGTACTTCAGGAGTTCTCTT+TGG + chr3_4:57526205-57526224 None:intergenic 45.0%
GTTTGCTTTCTCATGGCAGT+AGG + chr3_4:57526226-57526245 None:intergenic 45.0%
GAAGAAAGGGACCATAGATG+AGG - chr3_4:57526324-57526343 Msa0509190:intron 45.0%
GCATCCTCACATGATTCTGT+TGG - chr3_4:57526496-57526515 Msa0509190:CDS 45.0%
GATGCCAACAGAATCATGTG+AGG + chr3_4:57526503-57526522 None:intergenic 45.0%
GGCTGATAAGGTCTCTCTAT+CGG + chr3_4:57526606-57526625 None:intergenic 45.0%
GATAGAGAGACCTTATCAGC+CGG - chr3_4:57526605-57526624 Msa0509190:intron 45.0%
GACAGTGCAGAGATTTGGAA+AGG - chr3_4:57526666-57526685 Msa0509190:intron 45.0%
GGCGTTCAGTATCTTTGTCG+AGG + chr3_4:57521401-57521420 None:intergenic 50.0%
TAGGTCGGAGAAACGAGTTG+AGG + chr3_4:57521461-57521480 None:intergenic 50.0%
!!! GGAGAGTGGTGGTTTTAGGT+CGG + chr3_4:57521476-57521495 None:intergenic 50.0%
! GTTCGGAGAGTGGTGGTTTT+AGG + chr3_4:57521480-57521499 None:intergenic 50.0%
! GAGAGCTTGAAGAACGGGTT+CGG + chr3_4:57521497-57521516 None:intergenic 50.0%
! AGCTAGGGTTTTACCGGAAC+CGG + chr3_4:57521611-57521630 None:intergenic 50.0%
CGGCGAAGAATTTCGACAAG+TGG + chr3_4:57521643-57521662 None:intergenic 50.0%
!! GTTTGGGATTGGAAGCGTTC+CGG + chr3_4:57521663-57521682 None:intergenic 50.0%
TTCCAATCCCAAACCTCACC+AGG - chr3_4:57521669-57521688 Msa0509190:three_prime_UTR 50.0%
! AACCTGGTGAGGTTTGGGAT+TGG + chr3_4:57521674-57521693 None:intergenic 50.0%
GAATTGGAATGAGGAGAGGG+AGG + chr3_4:57521697-57521716 None:intergenic 50.0%
TGCGACGCTAATTCCCTTGT+AGG + chr3_4:57521804-57521823 None:intergenic 50.0%
!! ATGTATTGATTGGCACGCCG+GGG - chr3_4:57521940-57521959 Msa0509190:three_prime_UTR 50.0%
TGCTACTCAAACTCAGGCTG+TGG - chr3_4:57522643-57522662 Msa0509190:intron 50.0%
AGCTTGCCAAAGCAGGATTG+AGG - chr3_4:57522669-57522688 Msa0509190:intron 50.0%
CAGGATTGAGGAATCCTGTG+AGG - chr3_4:57522681-57522700 Msa0509190:intron 50.0%
TTTAGCAGCGAGTCTTTGCC+TGG - chr3_4:57522894-57522913 Msa0509190:intron 50.0%
!! ATAGGGTTGGTCGAACTGCT+CGG - chr3_4:57523759-57523778 Msa0509190:CDS 50.0%
TGCACCTGATGTTATACCCG+AGG - chr3_4:57523991-57524010 Msa0509190:intron 50.0%
ATGTCATGGAGAAGGGAGTC+AGG - chr3_4:57524426-57524445 Msa0509190:intron 50.0%
TGTCATGGAGAAGGGAGTCA+GGG - chr3_4:57524427-57524446 Msa0509190:intron 50.0%
TTGCAATAAGCCATGTCCCG+TGG + chr3_4:57524616-57524635 None:intergenic 50.0%
! AACTGGTTCAAATCCCACGG+TGG + chr3_4:57524676-57524695 None:intergenic 50.0%
TTCATCAATTGCCCTCCCCT+TGG + chr3_4:57525474-57525493 None:intergenic 50.0%
! ACTTTGAAGAGGGGAGGGAT+TGG - chr3_4:57525795-57525814 Msa0509190:CDS 50.0%
! CTTTGAAGAGGGGAGGGATT+GGG - chr3_4:57525796-57525815 Msa0509190:CDS 50.0%
CTCATGGCAGTAGGTACTTC+AGG + chr3_4:57526217-57526236 None:intergenic 50.0%
ATCCTCTGTGCCTGTCAACT+TGG + chr3_4:57526359-57526378 None:intergenic 50.0%
! GTGTTGTAATGGTGGAGTGC+TGG - chr3_4:57526434-57526453 Msa0509190:CDS 50.0%
ACGAAAGTTCCAGAGTTCGG+AGG - chr3_4:57526561-57526580 Msa0509190:CDS 50.0%
! ATGTCACTCACCGGCTGATA+AGG + chr3_4:57526618-57526637 None:intergenic 50.0%
GTGGTGACAGTGCAGAGATT+TGG - chr3_4:57526661-57526680 Msa0509190:intron 50.0%
GATACTGAACGCCGCAACCA+TGG - chr3_4:57521408-57521427 Msa0509190:three_prime_UTR 55.0%
GAACTCGGAGTCCATGGTTG+CGG + chr3_4:57521422-57521441 None:intergenic 55.0%
! TGAAGAACGGGTTCGGAGAG+TGG + chr3_4:57521490-57521509 None:intergenic 55.0%
! GCAGAGTAAGGGGATAGTGG+CGG + chr3_4:57521557-57521576 None:intergenic 55.0%
GCTGCAGAGTAAGGGGATAG+TGG + chr3_4:57521560-57521579 None:intergenic 55.0%
! TAGGGTTTTACCGGAACCGG+TGG + chr3_4:57521608-57521627 None:intergenic 55.0%
GGAGGAACCTGGTGAGGTTT+GGG + chr3_4:57521679-57521698 None:intergenic 55.0%
AATGAGGAGAGGGAGGAACC+TGG + chr3_4:57521690-57521709 None:intergenic 55.0%
!! GTGTCGGTGTCGGGCATTAT+TGG - chr3_4:57522290-57522309 Msa0509190:intron 55.0%
GTGGAAGAGCTTGCCAAAGC+AGG - chr3_4:57522662-57522681 Msa0509190:intron 55.0%
GCTCGAACTTCAACCCTCAC+AGG + chr3_4:57522698-57522717 None:intergenic 55.0%
TGTACGGATGTTGCAGCACG+TGG - chr3_4:57523506-57523525 Msa0509190:intron 55.0%
GCACGTGGACTTGACATACC+TGG - chr3_4:57523521-57523540 Msa0509190:intron 55.0%
ACTGCTCGGCTGGGTAAACA+AGG - chr3_4:57523773-57523792 Msa0509190:intron 55.0%
CTGCTCGGCTGGGTAAACAA+GGG - chr3_4:57523774-57523793 Msa0509190:intron 55.0%
GGCAAATTAGCCACGGGACA+TGG - chr3_4:57524603-57524622 Msa0509190:CDS 55.0%
ATCCCACGGTGGATAGTGAG+TGG + chr3_4:57524665-57524684 None:intergenic 55.0%
CTTGAGCTCAGCAGTTGGCT+CGG - chr3_4:57525556-57525575 Msa0509190:intron 55.0%
! TTGAGCTCAGCAGTTGGCTC+GGG - chr3_4:57525557-57525576 Msa0509190:intron 55.0%
! TGCCAAGTTGACAGGCACAG+AGG - chr3_4:57526354-57526373 Msa0509190:CDS 55.0%
GTTGGGGAACTCGGAGTCCA+TGG + chr3_4:57521428-57521447 None:intergenic 60.0%
! AGAACGGGTTCGGAGAGTGG+TGG + chr3_4:57521487-57521506 None:intergenic 60.0%
! GATAGTGGCGGCTTGAACGG+GGG + chr3_4:57521545-57521564 None:intergenic 60.0%
! GGATAGTGGCGGCTTGAACG+GGG + chr3_4:57521546-57521565 None:intergenic 60.0%
! GGGATAGTGGCGGCTTGAAC+GGG + chr3_4:57521547-57521566 None:intergenic 60.0%
! GGGGATAGTGGCGGCTTGAA+CGG + chr3_4:57521548-57521567 None:intergenic 60.0%
! GGTTTTACCGGAACCGGTGG+CGG + chr3_4:57521605-57521624 None:intergenic 60.0%
GGGAGGAACCTGGTGAGGTT+TGG + chr3_4:57521680-57521699 None:intergenic 60.0%
GTTGGTCGAACTGCTCGGCT+GGG - chr3_4:57523764-57523783 Msa0509190:intron 60.0%
ACGCCACTCACTATCCACCG+TGG - chr3_4:57524659-57524678 Msa0509190:intron 60.0%
CGCCACTCACTATCCACCGT+GGG - chr3_4:57524660-57524679 Msa0509190:intron 60.0%
GAAGTCGGTCCTCCGAACTC+TGG + chr3_4:57526573-57526592 None:intergenic 60.0%
GGAGAGGGAGGAACCTGGTG+AGG + chr3_4:57521685-57521704 None:intergenic 65.0%
! GGTTGGTCGAACTGCTCGGC+TGG - chr3_4:57523763-57523782 Msa0509190:intron 65.0%
! GGAACCGGTGGCGGCATCGA+CGG + chr3_4:57521596-57521615 None:intergenic 70.0%
!! GTCGATGCCGCCACCGGTTC+CGG - chr3_4:57521595-57521614 Msa0509190:three_prime_UTR 70.0%
GTCGCCGTCGATGCCGCCAC+CGG - chr3_4:57521589-57521608 Msa0509190:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 57521392 57526973 57521392 ID=Msa0509190;Name=Msa0509190
chr3_4 mRNA 57521392 57526973 57521392 ID=Msa0509190-mRNA-1;Parent=Msa0509190;Name=Msa0509190-mRNA-1;_AED=0.14;_eAED=0.14;_QI=35|1|1|1|1|1|11|586|589
chr3_4 exon 57521392 57522245 57521392 ID=Msa0509190-mRNA-1:exon:13206;Parent=Msa0509190-mRNA-1
chr3_4 exon 57523638 57523781 57523638 ID=Msa0509190-mRNA-1:exon:13205;Parent=Msa0509190-mRNA-1
chr3_4 exon 57523861 57523967 57523861 ID=Msa0509190-mRNA-1:exon:13204;Parent=Msa0509190-mRNA-1
chr3_4 exon 57524353 57524442 57524353 ID=Msa0509190-mRNA-1:exon:13203;Parent=Msa0509190-mRNA-1
chr3_4 exon 57524542 57524640 57524542 ID=Msa0509190-mRNA-1:exon:13202;Parent=Msa0509190-mRNA-1
chr3_4 exon 57524803 57524916 57524803 ID=Msa0509190-mRNA-1:exon:13201;Parent=Msa0509190-mRNA-1
chr3_4 exon 57525070 57525175 57525070 ID=Msa0509190-mRNA-1:exon:13200;Parent=Msa0509190-mRNA-1
chr3_4 exon 57525260 57525339 57525260 ID=Msa0509190-mRNA-1:exon:13199;Parent=Msa0509190-mRNA-1
chr3_4 exon 57525569 57525829 57525569 ID=Msa0509190-mRNA-1:exon:13198;Parent=Msa0509190-mRNA-1
chr3_4 exon 57526349 57526585 57526349 ID=Msa0509190-mRNA-1:exon:13197;Parent=Msa0509190-mRNA-1
chr3_4 exon 57526675 57526973 57526675 ID=Msa0509190-mRNA-1:exon:13196;Parent=Msa0509190-mRNA-1
chr3_4 five_prime_UTR 57526939 57526973 57526939 ID=Msa0509190-mRNA-1:five_prime_utr;Parent=Msa0509190-mRNA-1
chr3_4 CDS 57526675 57526938 57526675 ID=Msa0509190-mRNA-1:cds;Parent=Msa0509190-mRNA-1
chr3_4 CDS 57526349 57526585 57526349 ID=Msa0509190-mRNA-1:cds;Parent=Msa0509190-mRNA-1
chr3_4 CDS 57525569 57525829 57525569 ID=Msa0509190-mRNA-1:cds;Parent=Msa0509190-mRNA-1
chr3_4 CDS 57525260 57525339 57525260 ID=Msa0509190-mRNA-1:cds;Parent=Msa0509190-mRNA-1
chr3_4 CDS 57525070 57525175 57525070 ID=Msa0509190-mRNA-1:cds;Parent=Msa0509190-mRNA-1
chr3_4 CDS 57524803 57524916 57524803 ID=Msa0509190-mRNA-1:cds;Parent=Msa0509190-mRNA-1
chr3_4 CDS 57524542 57524640 57524542 ID=Msa0509190-mRNA-1:cds;Parent=Msa0509190-mRNA-1
chr3_4 CDS 57524353 57524442 57524353 ID=Msa0509190-mRNA-1:cds;Parent=Msa0509190-mRNA-1
chr3_4 CDS 57523861 57523967 57523861 ID=Msa0509190-mRNA-1:cds;Parent=Msa0509190-mRNA-1
chr3_4 CDS 57523638 57523781 57523638 ID=Msa0509190-mRNA-1:cds;Parent=Msa0509190-mRNA-1
chr3_4 CDS 57521978 57522245 57521978 ID=Msa0509190-mRNA-1:cds;Parent=Msa0509190-mRNA-1
chr3_4 three_prime_UTR 57521392 57521977 57521392 ID=Msa0509190-mRNA-1:three_prime_utr;Parent=Msa0509190-mRNA-1
Gene Sequence

>Msa0509190

ATGGACTCCGAGTTCCCCAACAAAGCATTAACCTCAACTCGTTTCTCCGACCTAAAACCACCACTCTCCGAACCCGTTCTTCAAGCTCTCACAGACTCAAACTTTGATTTCTGCACCCCCGTTCAAGCCGCCACTATCCCCTTACTCTGCAGCTACAAAGACGTCGCCGTCGATGCCGCCACCGGTTCCGGTAAAACCCTAGCTTTCGTCATTCCACTTGTCGAAATTCTTCGCCGGAACGCTTCCAATCCCAAACCTCACCAGGTGCTTGGAGTGATTATATCTCCTACAAGGGAATTAGCGTCGCAAATATATCATGTTGCACAGCCTTTTATTTCGACTTTAGCGAATGTTAAATCAATGCTACTTGTTGGTGGAGTGGAAGTGAAAGCAGATATGAAGAAAATTGAGGAAGAAGGAGCAAATGTATTGATTGGCACGCCGGGGCGATTGCATGATATTATGAATAGGATGGATATTTTGGATTTCAAAAGCTTTGAGATTTTGATTTTGGATGAGGCTGATAGACTATTAGATATGGGATTCCAGAAGCAGATAAATGCTATCATAACTGAGTTGCCTAAGCTTCGAAGAACTGGCTTATTCTCTGCTACTCAAACTCAGGCTGTGGAAGAGCTTGCCAAAGCAGGATTGAGGAATCCTGTGAGGGTTGAAGTTCGAGCTGAAACAAAAACAGCAAATGATTCTGCTGCATCAAAGAAAACAGAGTCTTCAAAGACACCTTCAGGTCTTCACATTGAGTACTTGGAATGTGAGGCAGATAAGAAACCGTCACAGCTTGTAGATTTCCTTGTTAAGAACCGCTCAAAAAAAATTATAATATATTTCATGACTTGTGCTTGTGTTGACTATTGGGGAGTGGTTCTTCCTCGCCTTTCTGTTTTGAAAGGCTTCTCCTTGATCTCCCTTCATGGAAAGATGAAGCAGTCTGTCAGGGAGAAGGCACTAACTTCATTTACATCCCTTTCAAATGGAATTCTTTTGTGTACGGATGTTGCAGCACGTGGACTTGACATACCTGGTGTAGACTGTATAGTGCAGTATGATCCTCCTCAAGACCCAAATGTGTTCGTACATAGGGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGGCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCATATGTAGAATTCTTGCGTATACGAAGAGTTCCTCTTCAAGAGAGAATGTGCTCCGACAATGCACCTGATGTTATACCCGAGATTCGTTCCGCGGCAACAAAAGATCGTGATGTCATGGAGAAGGGAGTCAGGGCATTTGTTTCTTACATTCGCGCTTATAAAGAGCATCACTGCTCTTATATTTTCAGGTGGAAAGAACTTGAAATTGGCAAATTAGCCACGGGACATGGCTTATTGCAACTTCCTTTAGTGCCGGAGATAAAACGCCACTCACTATCCACCGTGGGATTTGAACCAGTTAAAGATATCAATTTCGAGGAGATTAGATTCAGGGATAAATCAAGAGAGAAACAAAGGAAGAAAAACCTGCAAGTAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTAAAAAACCAAAGAGAACTCCTGAAGTACCTACTGCCATGAGAAAGCAAACAGCTAAACAAAGACGTGCTAAGCAGACAGTTGAAGATGAGGAAGAGTTGACGCAAGAATACCGGTTGTTGAAGAAATTGAAGAAAGGGACCATAGATGAGGATGAATATGCCAAGTTGACAGGCACAGAGGATTTACTTTGA
Protein sequence

>Msa0509190

MDSEFPNKALTSTRFSDLKPPLSEPVLQALTDSNFDFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVIPLVEILRRNASNPKPHQVLGVIISPTRELASQIYHVAQPFISTLANVKSMLLVGGVEVKADMKKIEEEGANVLIGTPGRLHDIMNRMDILDFKSFEILILDEADRLLDMGFQKQINAIITELPKLRRTGLFSATQTQAVEELAKAGLRNPVRVEVRAETKTANDSAASKKTESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDYWGVVLPRLSVLKGFSLISLHGKMKQSVREKALTSFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERMCSDNAPDVIPEIRSAATKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLATGHGLLQLPLVPEIKRHSLSTVGFEPVKDINFEEIRFRDKSREKQRKKNLQVKKEAKEKEPKPKKPKRTPEVPTAMRKQTAKQRRAKQTVEDEEELTQEYRLLKKLKKGTIDEDEYAKLTGTEDLL*