AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0746540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0746540 MtrunA17_Chr3g0114081 96.198 605 7 1 1 605 1 589 0.0 1186
Msa0746540 MtrunA17_Chr2g0307471 35.759 481 265 9 5 480 82 523 8.93e-82 267
Msa0746540 MtrunA17_Chr4g0062301 34.868 456 258 10 28 479 109 529 9.28e-77 254
Msa0746540 MtrunA17_Chr5g0443991 34.690 467 260 9 33 494 93 519 1.38e-68 236
Msa0746540 MtrunA17_Chr4g0034411 34.483 493 272 11 13 494 67 519 2.93e-67 233
Msa0746540 MtrunA17_Chr2g0301281 29.344 518 302 10 34 488 60 576 4.05e-62 216
Msa0746540 MtrunA17_Chr4g0029191 28.571 546 323 12 7 488 37 579 8.56e-62 215
Msa0746540 MtrunA17_Chr6g0483491 33.827 405 223 9 7 410 5 365 1.36e-57 199
Msa0746540 MtrunA17_Chr7g0236841 33.827 405 223 9 7 410 5 365 2.55e-57 199
Msa0746540 MtrunA17_Chr2g0300291 33.255 424 245 8 6 427 131 518 5.39e-56 202
Msa0746540 MtrunA17_Chr3g0098121 33.976 415 226 10 6 414 142 514 5.74e-55 199
Msa0746540 MtrunA17_Chr4g0040761 31.951 410 235 8 22 425 25 396 1.75e-53 195
Msa0746540 MtrunA17_Chr8g0386451 29.913 458 283 12 10 461 284 709 4.36e-52 191
Msa0746540 MtrunA17_Chr4g0076491 31.973 441 231 14 22 440 293 686 2.80e-51 188
Msa0746540 MtrunA17_Chr8g0347171 29.829 409 242 11 10 408 156 529 3.25e-51 186
Msa0746540 MtrunA17_Chr6g0449741 32.080 399 211 10 22 400 255 613 3.30e-51 187
Msa0746540 MtrunA17_Chr6g0449911 32.020 406 231 10 26 424 175 542 7.13e-51 187
Msa0746540 MtrunA17_Chr5g0442191 30.750 400 230 10 4 398 69 426 1.20e-50 184
Msa0746540 MtrunA17_Chr2g0293631 31.628 430 240 13 26 447 506 889 1.27e-50 189
Msa0746540 MtrunA17_Chr1g0200181 31.100 418 230 13 15 420 146 517 1.99e-50 184
Msa0746540 MtrunA17_Chr8g0347161 28.261 460 287 12 10 462 98 521 2.18e-50 183
Msa0746540 MtrunA17_Chr3g0107851 32.115 383 214 6 39 412 140 485 6.14e-50 182
Msa0746540 MtrunA17_Chr3g0095031 30.628 382 224 8 19 398 93 435 7.66e-50 181
Msa0746540 MtrunA17_Chr1g0176041 34.127 378 195 12 39 400 177 516 1.52e-49 181
Msa0746540 MtrunA17_Chr3g0121351 33.586 396 208 13 22 400 151 508 5.97e-49 180
Msa0746540 MtrunA17_Chr1g0157691 30.905 398 219 11 15 400 148 501 4.00e-48 177
Msa0746540 MtrunA17_Chr2g0330401 30.923 401 222 10 6 400 93 444 2.08e-47 173
Msa0746540 MtrunA17_Chr7g0270131 32.031 384 224 9 26 408 242 589 3.57e-47 177
Msa0746540 MtrunA17_Chr7g0271121 30.879 421 245 11 22 438 112 490 7.64e-47 176
Msa0746540 MtrunA17_Chr2g0277821 29.484 407 248 8 22 426 510 879 8.90e-47 177
Msa0746540 MtrunA17_Chr5g0409981 32.398 392 221 11 14 400 104 456 1.21e-46 172
Msa0746540 MtrunA17_Chr8g0347151 28.395 405 253 8 10 408 197 570 3.64e-45 170
Msa0746540 MtrunA17_Chr4g0063551 32.319 427 220 15 17 412 133 521 1.44e-43 166
Msa0746540 MtrunA17_Chr1g0193491 30.052 386 211 10 40 412 138 477 1.32e-42 162
Msa0746540 MtrunA17_Chr8g0354761 28.228 457 274 13 14 460 8 420 1.77e-42 159
Msa0746540 MtrunA17_Chr4g0003441 28.784 403 240 8 9 408 103 461 5.94e-42 158
Msa0746540 MtrunA17_Chr7g0236831 29.493 434 232 12 26 406 173 585 9.29e-42 161
Msa0746540 MtrunA17_Chr4g0070981 28.571 385 233 7 22 406 47 389 3.55e-39 149
Msa0746540 MtrunA17_Chr6g0475251 29.054 444 248 13 22 438 109 512 4.13e-39 152
Msa0746540 MtrunA17_Chr1g0204391 29.348 460 256 14 22 454 50 467 5.76e-39 151
Msa0746540 MtrunA17_Chr1g0149251 28.736 348 207 6 54 400 2 309 1.28e-38 145
Msa0746540 MtrunA17_Chr2g0310581 31.105 389 225 11 11 397 50 397 4.87e-38 147
Msa0746540 MtrunA17_Chr8g0342861 27.968 379 231 7 22 400 47 383 5.81e-38 145
Msa0746540 MtrunA17_Chr7g0247181 27.456 397 243 10 2 397 125 477 1.45e-37 146
Msa0746540 MtrunA17_Chr7g0247221 27.456 397 243 10 2 397 128 480 1.49e-37 146
Msa0746540 MtrunA17_Chr2g0297261 26.649 379 236 6 22 400 40 376 1.88e-37 144
Msa0746540 MtrunA17_Chr2g0299681 28.052 385 233 8 22 405 47 388 3.82e-37 143
Msa0746540 MtrunA17_Chr7g0247191 27.456 397 243 10 2 397 135 487 4.32e-37 145
Msa0746540 MtrunA17_Chr6g0461751 28.462 390 223 13 22 400 146 490 6.41e-37 144
Msa0746540 MtrunA17_Chr2g0329931 29.815 379 224 9 22 400 47 383 5.50e-36 139
Msa0746540 MtrunA17_Chr7g0263771 30.025 403 229 13 15 412 130 484 7.63e-35 139
Msa0746540 MtrunA17_Chr5g0429221 27.182 401 242 11 15 411 4 358 9.29e-34 133
Msa0746540 MtrunA17_Chr4g0062321 30.798 263 146 6 105 365 5 233 4.38e-33 127
Msa0746540 MtrunA17_Chr4g0058591 29.714 350 191 11 27 360 200 510 1.43e-31 129
Msa0746540 MtrunA17_Chr6g0466611 27.612 402 235 14 22 406 148 510 7.88e-31 128
Msa0746540 MtrunA17_Chr3g0145781 27.806 392 222 16 41 406 157 513 6.32e-28 118
Msa0746540 MtrunA17_Chr2g0309551 23.820 445 279 9 4 412 99 519 3.43e-27 115
Msa0746540 MtrunA17_Chr4g0004301 25.060 419 265 11 20 400 33 440 2.71e-23 103
Msa0746540 MtrunA17_Chr5g0434301 25.060 419 265 11 20 400 33 440 6.88e-23 102
Msa0746540 MtrunA17_Chr1g0192021 24.601 439 242 10 22 412 32 429 4.10e-22 100
Msa0746540 MtrunA17_Chr8g0364251 22.889 450 256 13 22 394 97 532 4.12e-21 97.4
Msa0746540 MtrunA17_Chr4g0039471 33.168 202 124 5 15 214 224 416 1.00e-19 92.0
Msa0746540 MtrunA17_Chr3g0137891 29.412 170 113 3 54 222 2 165 5.03e-17 80.9
Msa0746540 MtrunA17_Chr4g0074521 23.947 380 243 10 26 389 92 441 1.79e-16 82.4
Msa0746540 MtrunA17_Chr3g0137901 30.534 131 87 1 270 400 19 145 1.42e-15 75.1
Msa0746540 MtrunA17_Chr1g0169331 23.250 400 235 12 39 406 14 373 7.92e-15 76.6
Msa0746540 MtrunA17_Chr4g0062331 32.143 112 74 2 366 475 3 114 3.55e-14 71.2
Msa0746540 MtrunA17_Chr1g0155201 43.210 81 43 1 331 411 157 234 5.15e-14 73.9
Msa0746540 MtrunA17_Chr1g0155691 33.696 92 59 1 320 411 27 116 4.91e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0746540 AT5G05450.1 68.317 606 165 4 7 605 8 593 0.0 838
Msa0746540 AT1G71370.1 61.197 585 188 6 1 576 1 555 0.0 726
Msa0746540 AT1G71280.1 45.470 585 187 10 1 576 1 462 3.34e-160 467
Msa0746540 AT1G71280.2 56.011 366 101 4 1 363 1 309 7.70e-135 397
Msa0746540 AT3G18600.1 34.746 472 268 9 10 479 86 519 1.49e-81 267
Msa0746540 AT5G65900.1 33.058 484 283 11 10 490 151 596 3.89e-75 252
Msa0746540 AT5G54910.1 35.174 489 275 11 14 500 72 520 4.71e-72 246
Msa0746540 AT5G60990.1 35.917 387 195 10 39 413 33 378 3.78e-57 199
Msa0746540 AT4G16630.1 34.351 393 216 9 22 411 174 527 1.48e-56 204
Msa0746540 AT2G40700.1 30.000 520 298 12 34 488 50 568 2.68e-55 198
Msa0746540 AT1G77030.1 30.682 440 247 9 22 452 35 425 3.23e-54 198
Msa0746540 AT3G06480.1 34.536 388 213 10 26 411 446 794 3.54e-54 199
Msa0746540 AT5G63630.1 30.144 418 252 8 10 418 51 437 5.93e-53 189
Msa0746540 AT5G51280.1 31.019 432 238 14 15 434 148 531 1.47e-52 190
Msa0746540 AT4G33370.1 30.876 434 240 13 15 436 99 484 1.86e-52 189
Msa0746540 AT3G58570.1 35.185 378 191 12 39 400 170 509 3.68e-52 190
Msa0746540 AT5G63630.2 30.144 418 252 8 10 418 245 631 4.52e-52 191
Msa0746540 AT2G42520.2 35.450 378 190 12 39 400 183 522 5.95e-52 189
Msa0746540 AT2G42520.1 35.450 378 190 12 39 400 183 522 5.95e-52 189
Msa0746540 AT2G42520.3 35.450 378 190 12 39 400 183 522 5.95e-52 189
Msa0746540 AT5G08620.1 29.412 408 253 7 10 412 77 454 1.63e-51 186
Msa0746540 AT5G08610.1 30.216 417 253 7 10 418 379 765 4.98e-51 189
Msa0746540 AT3G22330.1 31.746 378 219 8 22 398 111 450 2.68e-50 184
Msa0746540 AT3G58510.1 33.902 410 211 15 13 400 141 512 4.37e-50 183
Msa0746540 AT3G58510.3 33.902 410 211 15 13 400 141 512 4.37e-50 183
Msa0746540 AT3G58510.2 33.902 410 211 15 13 400 141 512 4.37e-50 183
Msa0746540 AT1G16280.1 35.440 364 194 11 39 400 82 406 1.05e-49 180
Msa0746540 AT3G01540.1 30.896 424 244 12 26 447 169 545 4.34e-49 181
Msa0746540 AT3G01540.4 30.896 424 244 12 26 447 169 545 4.76e-49 181
Msa0746540 AT3G01540.2 30.896 424 244 12 26 447 169 545 4.76e-49 181
Msa0746540 AT3G01540.3 30.896 424 244 12 26 447 169 545 4.76e-49 181
Msa0746540 AT5G14610.2 30.374 428 249 10 22 447 168 548 3.98e-48 178
Msa0746540 AT5G63120.2 33.509 379 208 12 26 400 176 514 4.02e-48 177
Msa0746540 AT5G14610.6 30.374 428 249 10 22 447 168 548 4.17e-48 178
Msa0746540 AT5G14610.5 30.374 428 249 10 22 447 176 556 4.70e-48 178
Msa0746540 AT3G22310.2 30.446 381 222 9 22 399 123 463 1.72e-47 176
Msa0746540 AT3G22310.1 30.446 381 222 9 22 399 123 463 2.11e-47 176
Msa0746540 AT5G14610.7 30.695 417 240 10 33 447 48 417 2.96e-47 174
Msa0746540 AT5G14610.3 30.695 417 240 10 33 447 48 417 2.96e-47 174
Msa0746540 AT1G55150.1 31.959 388 222 10 15 400 101 448 1.32e-46 172
Msa0746540 AT5G14610.1 30.695 417 240 10 33 447 247 616 1.41e-46 175
Msa0746540 AT1G31970.1 31.903 373 215 9 35 402 134 472 1.69e-46 172
Msa0746540 AT2G47330.1 30.909 385 230 6 22 406 235 583 3.02e-46 174
Msa0746540 AT1G55150.2 31.959 388 222 10 15 400 126 473 3.92e-46 171
Msa0746540 AT2G33730.1 30.576 399 219 7 22 400 320 680 6.38e-46 173
Msa0746540 AT1G20920.4 28.993 407 250 7 22 426 536 905 6.42e-46 175
Msa0746540 AT1G20920.6 28.993 407 250 7 22 426 536 905 6.42e-46 175
Msa0746540 AT1G20920.3 28.993 407 250 7 22 426 536 905 6.42e-46 175
Msa0746540 AT1G20920.7 28.993 407 250 7 22 426 536 905 6.42e-46 175
Msa0746540 AT1G20920.5 28.993 407 250 7 22 426 536 905 6.42e-46 175
Msa0746540 AT1G20920.1 28.993 407 250 7 22 426 536 905 6.42e-46 175
Msa0746540 AT1G20920.2 28.993 407 250 7 22 426 198 567 1.88e-45 172
Msa0746540 AT3G06480.2 34.393 346 186 10 26 369 446 752 4.41e-45 171
Msa0746540 AT5G26742.1 30.623 369 205 9 40 399 127 453 3.52e-44 168
Msa0746540 AT5G26742.2 30.623 369 205 9 40 399 127 453 3.55e-44 168
Msa0746540 AT5G26742.3 30.978 368 202 10 41 399 36 360 5.06e-44 167
Msa0746540 AT1G51380.1 29.487 390 223 13 15 400 24 365 1.24e-42 158
Msa0746540 AT1G28180.1 32.044 362 200 8 44 400 2 322 4.50e-42 156
Msa0746540 AT1G63250.1 27.902 448 284 10 22 461 335 751 3.39e-40 157
Msa0746540 AT3G09720.2 29.820 389 224 11 26 412 152 493 3.43e-40 154
Msa0746540 AT3G09720.1 29.820 389 224 11 26 412 152 493 3.43e-40 154
Msa0746540 AT3G19760.1 28.093 388 235 8 13 400 35 378 4.62e-40 151
Msa0746540 AT2G07750.1 28.319 452 277 12 22 461 382 798 4.77e-40 157
Msa0746540 AT4G00660.1 27.456 397 243 10 2 397 117 469 5.15e-40 153
Msa0746540 AT4G00660.2 27.456 397 243 10 2 397 117 469 5.15e-40 153
Msa0746540 AT5G11170.1 29.095 409 231 12 9 408 42 400 1.25e-39 150
Msa0746540 AT5G11200.1 29.095 409 231 12 9 408 42 400 1.25e-39 150
Msa0746540 AT3G61240.2 27.204 397 244 10 2 397 110 462 7.67e-39 150
Msa0746540 AT3G61240.1 27.204 397 244 10 2 397 110 462 7.67e-39 150
Msa0746540 AT1G72730.1 29.049 389 230 10 17 405 47 389 2.32e-38 147
Msa0746540 AT2G45810.1 27.204 397 244 10 2 397 140 492 7.81e-38 147
Msa0746540 AT3G13920.1 29.688 384 228 9 22 405 46 387 9.58e-38 145
Msa0746540 AT3G13920.2 29.688 384 228 9 22 405 46 387 9.93e-38 145
Msa0746540 AT3G13920.3 29.688 384 228 9 22 405 36 377 1.29e-37 144
Msa0746540 AT3G13920.5 29.688 384 228 9 22 405 50 391 1.42e-37 144
Msa0746540 AT5G14610.4 30.966 352 202 9 22 372 176 487 1.48e-37 146
Msa0746540 AT1G54270.1 28.496 379 229 7 22 400 46 382 3.50e-37 143
Msa0746540 AT3G13920.4 29.262 393 236 9 13 405 32 382 4.92e-37 143
Msa0746540 AT5G11200.2 27.664 441 255 12 9 408 42 459 8.05e-37 144
Msa0746540 AT5G11200.3 27.660 423 260 11 9 408 42 441 9.91e-37 143
Msa0746540 AT1G54270.2 28.338 367 221 6 34 400 53 377 5.72e-36 140
Msa0746540 AT5G63120.1 32.558 344 188 12 26 365 176 479 1.40e-35 140
Msa0746540 AT5G63120.3 32.378 349 190 13 26 370 176 482 2.39e-35 139
Msa0746540 AT5G63120.4 32.378 349 190 13 26 370 176 482 2.39e-35 139
Msa0746540 AT5G63120.5 32.378 349 190 13 26 370 176 482 2.39e-35 139
Msa0746540 AT4G09730.1 27.640 445 259 15 22 448 119 518 2.51e-35 141
Msa0746540 AT5G11170.2 28.453 362 206 10 54 408 2 317 3.96e-35 136
Msa0746540 AT5G62190.1 28.941 387 226 9 22 399 103 449 6.57e-34 137
Msa0746540 AT1G12770.2 24.781 456 277 10 3 411 100 536 7.06e-32 130
Msa0746540 AT1G12770.1 24.781 456 277 10 3 411 100 536 7.06e-32 130
Msa0746540 AT3G02065.3 26.551 403 248 13 3 400 103 462 3.58e-31 127
Msa0746540 AT3G02065.2 26.551 403 248 13 3 400 103 462 3.58e-31 127
Msa0746540 AT3G16840.1 26.588 425 255 12 26 406 201 612 9.79e-31 128
Msa0746540 AT3G16840.2 26.588 425 255 12 26 406 202 613 1.01e-30 128
Msa0746540 AT3G06980.1 27.750 400 243 10 23 404 382 753 2.07e-30 127
Msa0746540 AT3G09620.1 34.300 207 132 3 22 226 403 607 5.98e-29 123
Msa0746540 AT3G09620.1 36.957 92 57 1 335 426 653 743 2.79e-11 67.4
Msa0746540 AT3G09620.2 34.300 207 132 3 22 226 404 608 6.15e-29 123
Msa0746540 AT3G09620.2 36.957 92 57 1 335 426 654 744 2.72e-11 67.4
Msa0746540 AT4G15850.1 27.273 462 255 19 17 428 33 463 3.50e-27 116
Msa0746540 AT3G02065.1 25.556 360 225 11 46 400 4 325 4.21e-27 113
Msa0746540 AT3G53110.1 25.432 405 247 12 11 401 89 452 2.38e-24 107
Msa0746540 AT1G51380.2 31.507 219 138 7 15 232 24 231 1.13e-23 101
Msa0746540 AT1G51380.4 31.507 219 138 7 15 232 24 231 7.16e-23 99.8
Msa0746540 AT1G51380.3 31.507 219 138 7 15 232 24 231 7.94e-23 99.8
Msa0746540 AT4G34910.1 24.634 410 234 12 22 389 53 429 3.62e-21 98.2
Msa0746540 AT5G19210.2 24.439 401 257 12 24 408 85 455 3.39e-19 91.3
Msa0746540 AT1G28180.2 35.897 117 70 3 44 157 2 116 1.64e-11 62.4
Msa0746540 AT1G59990.2 30.093 216 124 7 22 225 87 287 2.22e-11 67.0
Msa0746540 AT1G59990.1 30.093 216 124 7 22 225 87 287 2.61e-11 67.0

Find 181 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAATAGGATGGATATTT+TGG 0.094078 5_1:+68709232 Msa0746540:CDS
TAGTGGGAGCAAACAAAATT+TGG 0.206414 5_1:-68714010 None:intergenic
TGGCTTCTTTCTTTACTTGC+AGG 0.214905 5_1:-68713411 None:intergenic
TGATAGCATTTATCTGCTTC+TGG 0.233957 5_1:-68709835 None:intergenic
TTGTGCTTGTGTTGACTATT+GGG 0.252553 5_1:+68710461 Msa0746540:CDS
AATACATGAAACATCTTATA+TGG 0.287256 5_1:-68710187 None:intergenic
GGAGGAACCTGGTGAGGTTT+GGG 0.292465 5_1:-68708931 None:intergenic
CACTTTCTATGTACATTAAT+CGG 0.309890 5_1:-68713899 None:intergenic
GGGATAGTGGCGGCTTGAAC+GGG 0.311237 5_1:-68708799 None:intergenic
GTCGATGCCGCCACCGGTTC+CGG 0.316733 5_1:+68708850 Msa0746540:CDS
TTCGCTAAAGTCGAAATAAA+AGG 0.318766 5_1:-68709098 None:intergenic
TCGAAATTGATATCTTTAAC+TGG 0.318792 5_1:-68711949 None:intergenic
CTCATGGCAGTAGGTACTTC+AGG 0.321137 5_1:-68713472 None:intergenic
CTTGTGCTTGTGTTGACTAT+TGG 0.322627 5_1:+68710460 Msa0746540:CDS
GGGAGGAACCTGGTGAGGTT+TGG 0.322712 5_1:-68708932 None:intergenic
TGCGACGCTAATTCCCTTGT+AGG 0.324437 5_1:-68709056 None:intergenic
GTTCCTTTGTTTAGTCTGAT+AGG 0.325177 5_1:+68714076 Msa0746540:three_prime_UTR
ACCCTATGTACGAACACATT+TGG 0.326512 5_1:-68711002 None:intergenic
TCTCTCTATCGGCAACAAAA+TGG 0.341539 5_1:-68713850 None:intergenic
GGTACTTCAGGAGTTCTCTT+TGG 0.346860 5_1:-68713460 None:intergenic
AGGTGGAAAGAACTTGAAAT+TGG 0.350487 5_1:+68711841 Msa0746540:intron
GGTTGGTCGAACTGCTCGGC+TGG 0.352335 5_1:+68711022 Msa0746540:CDS
GGCTGATAGACTATTAGATA+TGG 0.362002 5_1:+68709808 Msa0746540:CDS
CATGTCTGATTACGCTGTTA+TGG 0.364264 5_1:+68713658 Msa0746540:three_prime_UTR
TTCTCCTTGATCTCCCTTCA+TGG 0.368126 5_1:+68710519 Msa0746540:CDS
GATAGTGGCGGCTTGAACGG+GGG 0.370101 5_1:-68708797 None:intergenic
CCCTATGTACGAACACATTT+GGG 0.373541 5_1:-68711001 None:intergenic
CGCTGTTATGGATATGTTGT+TGG 0.376752 5_1:+68713670 Msa0746540:three_prime_UTR
TTGCCTAAGCTTCGAAGAAC+TGG 0.383379 5_1:+68709866 Msa0746540:CDS
GTTGAGGTTAATGCTTTGTT+GGG 0.388895 5_1:-68708697 None:intergenic
GTTTGGGATTGGAAGCGTTC+CGG 0.390910 5_1:-68708915 None:intergenic
GTGGTGACAGTGCAGAGATT+TGG 0.391096 5_1:+68713919 Msa0746540:three_prime_UTR
GGCATATTCATCCTCATCTA+TGG 0.399507 5_1:-68713593 None:intergenic
GTCTTTGTAGCTGCAGAGTA+AGG 0.400408 5_1:-68708821 None:intergenic
GTGTTGTAATGGTGGAGTGC+TGG 0.403643 5_1:+68713692 Msa0746540:three_prime_UTR
ATGTCATGGAGAAGGGAGTC+AGG 0.405545 5_1:+68711685 Msa0746540:CDS
AGGATTCCTCAATCCTGCTT+TGG 0.407237 5_1:-68709930 None:intergenic
ATGTCACTCACCGGCTGATA+AGG 0.410351 5_1:-68713873 None:intergenic
CAAAAGAATTCCATTTGAAA+GGG 0.416153 5_1:-68710742 None:intergenic
AGTGGGAGCAAACAAAATTT+GGG 0.417509 5_1:-68714009 None:intergenic
AGTATCTTTGTCGAGGTTTG+TGG 0.421561 5_1:-68708646 None:intergenic
TCTTCAATTTCTTCAACAAC+CGG 0.422064 5_1:-68713564 None:intergenic
TTTAGCAGCGAGTCTTTGCC+TGG 0.423029 5_1:+68710149 Msa0746540:intron
AGTTGAGGTTAATGCTTTGT+TGG 0.423528 5_1:-68708698 None:intergenic
TCATTTACATCCCTTTCAAA+TGG 0.430625 5_1:+68710732 Msa0746540:CDS
ATTTCGAGGAGATTAGATTC+AGG 0.431126 5_1:+68711965 Msa0746540:CDS
TTTGGTTATTTGTAGGTGCT+TGG 0.431263 5_1:+68709020 Msa0746540:intron
GAGTCTTCAAAGACACCTTC+AGG 0.436469 5_1:+68710016 Msa0746540:CDS
AATGTATTGATTGGCACGCC+GGG 0.448464 5_1:+68709194 Msa0746540:CDS
GGATAGTGGCGGCTTGAACG+GGG 0.450785 5_1:-68708798 None:intergenic
TTTAGCTGTTTGCTTTCTCA+TGG 0.452366 5_1:-68713488 None:intergenic
ATCCTCTGTGCCTGTCAACT+TGG 0.453170 5_1:-68713614 None:intergenic
TTTGGAAAGGTACTAGTCCT+TGG 0.453614 5_1:+68713937 Msa0746540:three_prime_UTR
TCTGTGAGAGCTTGAAGAAC+GGG 0.456416 5_1:-68708754 None:intergenic
AAGCCAGTTCTTCGAAGCTT+AGG 0.459046 5_1:-68709869 None:intergenic
ATATGTTGTTGGTGTTGTAA+TGG 0.461693 5_1:+68713681 Msa0746540:three_prime_UTR
TTTGGATTTCAAAAGCTTTG+AGG 0.461707 5_1:+68709250 Msa0746540:CDS
GAGAGCTTGAAGAACGGGTT+CGG 0.462659 5_1:-68708749 None:intergenic
GATGAATATGCCAAGTTGAC+AGG 0.467389 5_1:+68713604 Msa0746540:CDS
ACAAAAGAATTCCATTTGAA+AGG 0.468025 5_1:-68710743 None:intergenic
ATGAAGAAAATTGAGGAAGA+AGG 0.468170 5_1:+68709167 Msa0746540:CDS
TAGAAGTCGAATTATGTTCA+AGG 0.469185 5_1:+68714115 Msa0746540:three_prime_UTR
GAAGGAGCAAATGTATTGAT+TGG 0.470143 5_1:+68709185 Msa0746540:CDS
GATTGCATGATATTATGAAT+AGG 0.472514 5_1:+68709219 Msa0746540:CDS
CTTTCCATGAAGGGAGATCA+AGG 0.478395 5_1:-68710523 None:intergenic
TAATGCTTTGTTGGGGAACT+CGG 0.478400 5_1:-68708689 None:intergenic
CCCAAATGTGTTCGTACATA+GGG 0.481660 5_1:+68711001 Msa0746540:CDS
TGTTGTTGGTGTTGTAATGG+TGG 0.484754 5_1:+68713684 Msa0746540:three_prime_UTR
GGCAAATTAGCCACGGGACA+TGG 0.486232 5_1:+68711862 Msa0746540:CDS
GGGGATAGTGGCGGCTTGAA+CGG 0.488716 5_1:-68708800 None:intergenic
TGTTTAGTCTGATAGGATGC+AGG 0.491537 5_1:+68714083 Msa0746540:three_prime_UTR
GTTGGGGAACTCGGAGTCCA+TGG 0.492465 5_1:-68708680 None:intergenic
GTGGAAGAGCTTGCCAAAGC+AGG 0.492512 5_1:+68709917 Msa0746540:CDS
GTTTGCTTTCTCATGGCAGT+AGG 0.493178 5_1:-68713481 None:intergenic
GTTAAATCAATGCTACTTGT+TGG 0.495004 5_1:+68709122 Msa0746540:CDS
AGTTAAAGATATCAATTTCG+AGG 0.496514 5_1:+68711951 Msa0746540:CDS
CAAGTGGAATGACGAAAGCT+AGG 0.496591 5_1:-68708879 None:intergenic
TGTTGAAGAAATTGAAGAAA+GGG 0.497161 5_1:+68713569 Msa0746540:CDS
GAAGTCGGTCCTCCGAACTC+TGG 0.497228 5_1:-68713828 None:intergenic
CCTGCTTCATCTTTCCATGA+AGG 0.498559 5_1:-68710533 None:intergenic
TATAACATCAGGTGCATTGT+CGG 0.498976 5_1:-68711243 None:intergenic
GTAACGAAAGTTCCAGAGTT+CGG 0.505651 5_1:+68713816 Msa0746540:three_prime_UTR
AGCAGATATGAAGAAAATTG+AGG 0.509076 5_1:+68709160 Msa0746540:CDS
TTGTTGAAGAAATTGAAGAA+AGG 0.513692 5_1:+68713568 Msa0746540:CDS
GCTCGAACTTCAACCCTCAC+AGG 0.515886 5_1:-68709950 None:intergenic
TAAACCTCGGGTATAACATC+AGG 0.516672 5_1:-68711254 None:intergenic
GCTGATAGACTATTAGATAT+GGG 0.519123 5_1:+68709809 Msa0746540:CDS
TGCTACTCAAACTCAGGCTG+TGG 0.524602 5_1:+68709898 Msa0746540:CDS
AACCTGGTGAGGTTTGGGAT+TGG 0.529734 5_1:-68708926 None:intergenic
TTCCAATCCCAAACCTCACC+AGG 0.530067 5_1:+68708924 Msa0746540:CDS
ATTCTCTGCTACTCAAACTC+AGG 0.530389 5_1:+68709892 Msa0746540:CDS
GCTGCAGAGTAAGGGGATAG+TGG 0.534078 5_1:-68708812 None:intergenic
CGATTAATGTACATAGAAAG+TGG 0.534968 5_1:+68713900 Msa0746540:three_prime_UTR
TGTTGTCTTCTTATTACCAA+AGG 0.535024 5_1:+68711061 Msa0746540:CDS
CTGCTTCATCTTTCCATGAA+GGG 0.535878 5_1:-68710532 None:intergenic
ACCTTCAGGTCTTCACATTG+AGG 0.536458 5_1:+68710030 Msa0746540:CDS
TTGTGTTGACTATTGGGGAG+TGG 0.537431 5_1:+68710467 Msa0746540:CDS
TGGATTATAGTAAGAGCGCC+AGG 0.537790 5_1:-68710167 None:intergenic
GCATGATATTATGAATAGGA+TGG 0.542168 5_1:+68709223 Msa0746540:CDS
AAGAGTTGACGCAAGAATAC+CGG 0.542711 5_1:+68713545 Msa0746540:CDS
ATTGCAACTTCCTTTAGTGC+CGG 0.543669 5_1:+68711888 Msa0746540:CDS
TGAAGAACGGGTTCGGAGAG+TGG 0.543714 5_1:-68708742 None:intergenic
GGCTGATAAGGTCTCTCTAT+CGG 0.543754 5_1:-68713861 None:intergenic
ACCCAAATGTGTTCGTACAT+AGG 0.544504 5_1:+68711000 Msa0746540:CDS
GAACTCGGAGTCCATGGTTG+CGG 0.546229 5_1:-68708674 None:intergenic
AGATCGTGATGTCATGGAGA+AGG 0.548299 5_1:+68711677 Msa0746540:CDS
CGGCGAAGAATTTCGACAAG+TGG 0.548528 5_1:-68708895 None:intergenic
GAGTGATTATATCTCCTACA+AGG 0.549275 5_1:+68709042 Msa0746540:CDS
GTCTATCTTTCTCTGATCCA+AGG 0.550342 5_1:-68713954 None:intergenic
ACTGCTCGGCTGGGTAAACA+AGG 0.550811 5_1:+68711032 Msa0746540:CDS
GTCGCCGTCGATGCCGCCAC+CGG 0.552287 5_1:+68708844 Msa0746540:CDS
ATAGGGTTGGTCGAACTGCT+CGG 0.553877 5_1:+68711018 Msa0746540:CDS
AAATGTATTGATTGGCACGC+CGG 0.554629 5_1:+68709193 Msa0746540:CDS
GATACTGAACGCCGCAACCA+TGG 0.554925 5_1:+68708663 Msa0746540:exon
TCTTTGTAGCTGCAGAGTAA+GGG 0.556900 5_1:-68708820 None:intergenic
GGAACCGGTGGCGGCATCGA+CGG 0.557986 5_1:-68708848 None:intergenic
GTTGGTCGAACTGCTCGGCT+GGG 0.559137 5_1:+68711023 Msa0746540:CDS
TATATAGTCTGTCAGGGAGA+AGG 0.560987 5_1:+68710701 Msa0746540:intron
GTCTGTGAGAGCTTGAAGAA+CGG 0.568734 5_1:-68708755 None:intergenic
CATAACAGCGTAATCAGACA+TGG 0.570421 5_1:-68713657 None:intergenic
TAAACAAAGTGTCAAAGTCA+TGG 0.571095 5_1:+68714153 Msa0746540:three_prime_UTR
CACTTGTCGAAATTCTTCGC+CGG 0.571139 5_1:+68708896 Msa0746540:CDS
GATCGTGATGTCATGGAGAA+GGG 0.571489 5_1:+68711678 Msa0746540:CDS
TGGTGTAGACTGTATAGTGC+AGG 0.579703 5_1:+68710800 Msa0746540:CDS
AGCTTGCCAAAGCAGGATTG+AGG 0.581011 5_1:+68709924 Msa0746540:CDS
ACCTCAATGTGAAGACCTGA+AGG 0.582539 5_1:-68710031 None:intergenic
TGTACGGATGTTGCAGCACG+TGG 0.584350 5_1:+68710765 Msa0746540:CDS
ATAAATCAAGAGAGAAACAA+AGG 0.586055 5_1:+68713380 Msa0746540:CDS
ACGAACACATTTGGGTCTTG+AGG 0.586361 5_1:-68710993 None:intergenic
AACAAAAGATCGTGATGTCA+TGG 0.590128 5_1:+68711671 Msa0746540:CDS
CTTTGTAGCTGCAGAGTAAG+GGG 0.590827 5_1:-68708819 None:intergenic
AACACATTTGGGTCTTGAGG+AGG 0.592214 5_1:-68710990 None:intergenic
TAAGCAGACAGTTGAAGATG+AGG 0.592692 5_1:+68713522 Msa0746540:CDS
GCTGTAATATACTAGTCCAC+TGG 0.593012 5_1:-68713733 None:intergenic
TGAAATTGGCAAATTAGCCA+CGG 0.593432 5_1:+68711855 Msa0746540:CDS
GAGCACATTCTCTCTTGAAG+AGG 0.594936 5_1:-68711221 None:intergenic
AAATCAATGCTACTTGTTGG+TGG 0.597917 5_1:+68709125 Msa0746540:CDS
GGCGTTCAGTATCTTTGTCG+AGG 0.597961 5_1:-68708653 None:intergenic
GAAATTGGCAAATTAGCCAC+GGG 0.598244 5_1:+68711856 Msa0746540:CDS
GCATCCTCACATGATTCTGT+TGG 0.598804 5_1:+68713754 Msa0746540:three_prime_UTR
TTTAACTGGTTCAAATCCCA+CGG 0.599568 5_1:-68711935 None:intergenic
CCTTCATGGAAAGATGAAGC+AGG 0.600565 5_1:+68710533 Msa0746540:CDS
TGTGCTTGTGTTGACTATTG+GGG 0.604078 5_1:+68710462 Msa0746540:CDS
AGAAGCCTTTCAAAACAGAA+AGG 0.606204 5_1:-68710500 None:intergenic
AAGTGGAATGACGAAAGCTA+GGG 0.608754 5_1:-68708878 None:intergenic
GATAGAGAGACCTTATCAGC+CGG 0.617470 5_1:+68713863 Msa0746540:three_prime_UTR
CGCCACTCACTATCCACCGT+GGG 0.618119 5_1:+68711919 Msa0746540:CDS
AGTGATTATATCTCCTACAA+GGG 0.619719 5_1:+68709043 Msa0746540:CDS
AATCGGTAAATGTCACTCAC+CGG 0.624172 5_1:-68713882 None:intergenic
ATCGGCAACAAAATGGAAGT+CGG 0.624784 5_1:-68713843 None:intergenic
AGGAAATCTACAAGCTGTGA+CGG 0.627262 5_1:-68710312 None:intergenic
AATGTGTTCGTACATAGGGT+TGG 0.628554 5_1:+68711005 Msa0746540:CDS
AATGCTACTTGTTGGTGGAG+TGG 0.628643 5_1:+68709130 Msa0746540:CDS
GACAGTGCAGAGATTTGGAA+AGG 0.629243 5_1:+68713924 Msa0746540:three_prime_UTR
TGCACCTGATGTTATACCCG+AGG 0.631727 5_1:+68711250 Msa0746540:CDS
GACATGTATACATCTTACAC+TGG 0.633670 5_1:+68713794 Msa0746540:three_prime_UTR
GCACGTGGACTTGACATACC+TGG 0.634273 5_1:+68710780 Msa0746540:CDS
GAAGAAAGGGACCATAGATG+AGG 0.634552 5_1:+68713582 Msa0746540:CDS
GAATGTTCTTAGATAACCAG+TGG 0.635946 5_1:+68713717 Msa0746540:three_prime_UTR
CTTGCAGTACTTGGAATGTG+AGG 0.636915 5_1:+68710278 Msa0746540:intron
AGAACGGGTTCGGAGAGTGG+TGG 0.641488 5_1:-68708739 None:intergenic
ATAATATCATGCAATCGCCC+CGG 0.643181 5_1:-68709212 None:intergenic
ATCCCACGGTGGATAGTGAG+TGG 0.643637 5_1:-68711921 None:intergenic
TTGAGGTTAATGCTTTGTTG+GGG 0.644922 5_1:-68708696 None:intergenic
CATCCTATCAGACTAAACAA+AGG 0.646152 5_1:-68714079 None:intergenic
AGGATTGAGGAATCCTGTGA+GGG 0.652822 5_1:+68709937 Msa0746540:CDS
TGTCATGGAGAAGGGAGTCA+GGG 0.653830 5_1:+68711686 Msa0746540:CDS
TTGCAATAAGCCATGTCCCG+TGG 0.654749 5_1:-68711872 None:intergenic
TGCACTATACAGTCTACACC+AGG 0.665445 5_1:-68710798 None:intergenic
CCTTTCAAAACAGAAAGGCG+AGG 0.674569 5_1:-68710495 None:intergenic
GCAGAGTAAGGGGATAGTGG+CGG 0.676114 5_1:-68708809 None:intergenic
GGAGAGGGAGGAACCTGGTG+AGG 0.681157 5_1:-68708937 None:intergenic
TAGGTCGGAGAAACGAGTTG+AGG 0.684963 5_1:-68708713 None:intergenic
ATGTATTGATTGGCACGCCG+GGG 0.688464 5_1:+68709195 Msa0746540:CDS
CAGGATTGAGGAATCCTGTG+AGG 0.689064 5_1:+68709936 Msa0746540:CDS
TGCCAAGTTGACAGGCACAG+AGG 0.710992 5_1:+68713612 Msa0746540:CDS
ACGAAAGTTCCAGAGTTCGG+AGG 0.713143 5_1:+68713819 Msa0746540:three_prime_UTR
GATGCCAACAGAATCATGTG+AGG 0.723756 5_1:-68713758 None:intergenic
ACGCCACTCACTATCCACCG+TGG 0.727058 5_1:+68711918 Msa0746540:CDS
CTGCTCGGCTGGGTAAACAA+GGG 0.728024 5_1:+68711033 Msa0746540:CDS
AACTGGTTCAAATCCCACGG+TGG 0.741727 5_1:-68711932 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAACTTCAAATTTTATA+GGG + chr5_1:68713357-68713376 Msa0746540:intron 10.0%
!! ATATTTCAGGATTTATTATT+TGG + chr5_1:68709651-68709670 Msa0746540:intron 15.0%
!! AAATTAACCAAAAAAATGAA+GGG - chr5_1:68710132-68710151 None:intergenic 15.0%
!! TAAATTAACCAAAAAAATGA+AGG - chr5_1:68710133-68710152 None:intergenic 15.0%
!!! ACATTATAATTTTTTTTGAG+CGG - chr5_1:68710347-68710366 None:intergenic 15.0%
!!! TTTAATTTTGAAAATAGAAG+TGG + chr5_1:68712510-68712529 Msa0746540:intron 15.0%
!! TACCTATAACTAAAAAAATA+GGG - chr5_1:68713014-68713033 None:intergenic 15.0%
!!! CTTAAAACTTCAAATTTTAT+AGG + chr5_1:68713356-68713375 Msa0746540:intron 15.0%
!! AATGATTAACCTAATTGAAT+TGG - chr5_1:68708968-68708987 None:intergenic 20.0%
!!! GTATAAATTTTAGAGAGAAT+AGG + chr5_1:68709272-68709291 Msa0746540:intron 20.0%
!!! GTTAAGTTATCTTTAAAAAG+CGG + chr5_1:68709358-68709377 Msa0746540:intron 20.0%
!! AGTAAAAGATAGAGTTTAAT+GGG - chr5_1:68709459-68709478 None:intergenic 20.0%
!! AAGTAAAAGATAGAGTTTAA+TGG - chr5_1:68709460-68709479 None:intergenic 20.0%
!! ACATAATTGAATGTAATGTA+AGG + chr5_1:68709523-68709542 Msa0746540:intron 20.0%
!!! TTTAAGATTCCTTATATTTG+TGG + chr5_1:68709719-68709738 Msa0746540:intron 20.0%
!! AATACATGAAACATCTTATA+TGG - chr5_1:68710190-68710209 None:intergenic 20.0%
!! ATGTTTCATGTATTACTAAT+AGG + chr5_1:68710196-68710215 Msa0746540:intron 20.0%
!! TAAAGTTCGACAAAAATAAT+GGG - chr5_1:68710649-68710668 None:intergenic 20.0%
!! TTTACTGTTTGTATACTTAT+TGG + chr5_1:68710665-68710684 Msa0746540:intron 20.0%
!!! TCTTTAAGCTTATCTTTTTA+TGG + chr5_1:68711134-68711153 Msa0746540:intron 20.0%
!! AAAAAAAAATCTAACAGTGA+AGG - chr5_1:68711500-68711519 None:intergenic 20.0%
!!! TTAAGTTTTATTGATTGTCT+AGG + chr5_1:68711528-68711547 Msa0746540:intron 20.0%
!!! TGATCATAATTTTGTTATCA+GGG - chr5_1:68711626-68711645 None:intergenic 20.0%
!!! TTGATCATAATTTTGTTATC+AGG - chr5_1:68711627-68711646 None:intergenic 20.0%
!! ATGAATATTGACAATTAGAA+AGG - chr5_1:68712011-68712030 None:intergenic 20.0%
!! AGATGTACAAAAGTTATATT+GGG + chr5_1:68712658-68712677 Msa0746540:intron 20.0%
!!! TATTATTGTTACATTTTCCA+AGG + chr5_1:68712712-68712731 Msa0746540:intron 20.0%
!!! ATTATTGTTACATTTTCCAA+GGG + chr5_1:68712713-68712732 Msa0746540:intron 20.0%
!! TATGAAAATCAAAATTGAGT+TGG + chr5_1:68712951-68712970 Msa0746540:intron 20.0%
!!! ATCCCTATTTTTTTAGTTAT+AGG + chr5_1:68713009-68713028 Msa0746540:intron 20.0%
!! CTACCTATAACTAAAAAAAT+AGG - chr5_1:68713015-68713034 None:intergenic 20.0%
!! TTAAAAAGACTATAGATAGT+GGG - chr5_1:68714029-68714048 None:intergenic 20.0%
!! ATTAAAAAGACTATAGATAG+TGG - chr5_1:68714030-68714049 None:intergenic 20.0%
! CACTTCATTATCACATAAAT+TGG - chr5_1:68709000-68709019 None:intergenic 25.0%
!! TTATGTGATAATGAAGTGTT+TGG + chr5_1:68709002-68709021 Msa0746540:intron 25.0%
! GATTGCATGATATTATGAAT+AGG + chr5_1:68709219-68709238 Msa0746540:CDS 25.0%
!! TATGAATAGGATGGATATTT+TGG + chr5_1:68709232-68709251 Msa0746540:CDS 25.0%
! TTAAAAAGCGGTTACAAATT+AGG + chr5_1:68709370-68709389 Msa0746540:intron 25.0%
! GTAAAAGATAGAGTTTAATG+GGG - chr5_1:68709458-68709477 None:intergenic 25.0%
! ATTTGGGTATTAATAGGAAT+AGG + chr5_1:68709743-68709762 Msa0746540:intron 25.0%
! GTAAAGTTCGACAAAAATAA+TGG - chr5_1:68710650-68710669 None:intergenic 25.0%
!! ATTTTTCTATATAGTCTGTC+AGG + chr5_1:68710694-68710713 Msa0746540:intron 25.0%
!! TTTTTCTATATAGTCTGTCA+GGG + chr5_1:68710695-68710714 Msa0746540:intron 25.0%
! CAAAAGAATTCCATTTGAAA+GGG - chr5_1:68710745-68710764 None:intergenic 25.0%
! ACAAAAGAATTCCATTTGAA+AGG - chr5_1:68710746-68710765 None:intergenic 25.0%
!! AAATGGAATTCTTTTGTGTA+CGG + chr5_1:68710749-68710768 Msa0746540:CDS 25.0%
! TCAAATTGAAAAATAAACCG+TGG + chr5_1:68710886-68710905 Msa0746540:intron 25.0%
! ATGAAGAAATATTTGAACCA+CGG - chr5_1:68710906-68710925 None:intergenic 25.0%
! TATTTCTTCATATTTACCAC+TGG + chr5_1:68710915-68710934 Msa0746540:intron 25.0%
! ATTAATCTATGTCAATGTGT+AGG + chr5_1:68711160-68711179 Msa0746540:intron 25.0%
! TCGAAATTGATATCTTTAAC+TGG - chr5_1:68711952-68711971 None:intergenic 25.0%
! AGTTAAAGATATCAATTTCG+AGG + chr5_1:68711951-68711970 Msa0746540:CDS 25.0%
! TAATATAGAAGCTAATCTCA+CGG - chr5_1:68712138-68712157 None:intergenic 25.0%
!!! AGATTAGCTTCTATATTACT+TGG + chr5_1:68712140-68712159 Msa0746540:intron 25.0%
! TTTCATCTTGTTGAAGATAT+GGG - chr5_1:68712328-68712347 None:intergenic 25.0%
! CTTTATCTTGTTAGAAGATA+TGG - chr5_1:68712382-68712401 None:intergenic 25.0%
! CATATCTTCTAACAAGATAA+AGG + chr5_1:68712380-68712399 Msa0746540:intron 25.0%
!!! AGCTTGTTATGCTTAAAATA+TGG + chr5_1:68712443-68712462 Msa0746540:intron 25.0%
! TTAAAATATGGACAATGCAA+AGG + chr5_1:68712455-68712474 Msa0746540:intron 25.0%
! TAAAATATGGACAATGCAAA+GGG + chr5_1:68712456-68712475 Msa0746540:intron 25.0%
! TTAAAATTCAGCACAAGTTT+AGG - chr5_1:68712485-68712504 None:intergenic 25.0%
!! TATAACTTTTGTACATCTGA+TGG - chr5_1:68712656-68712675 None:intergenic 25.0%
! CAGATGTACAAAAGTTATAT+TGG + chr5_1:68712657-68712676 Msa0746540:intron 25.0%
!! TTATTGTTACATTTTCCAAG+GGG + chr5_1:68712714-68712733 Msa0746540:intron 25.0%
! ATCAAGATCAACAAAGAATT+TGG - chr5_1:68713098-68713117 None:intergenic 25.0%
! TCGAAAGAAAATACGAATAT+AGG - chr5_1:68713178-68713197 None:intergenic 25.0%
!!! GAGTTTTGATCAATAAAATG+AGG + chr5_1:68713267-68713286 Msa0746540:intron 25.0%
! ATAAATCAAGAGAGAAACAA+AGG + chr5_1:68713380-68713399 Msa0746540:CDS 25.0%
! TTGTTGAAGAAATTGAAGAA+AGG + chr5_1:68713568-68713587 Msa0746540:CDS 25.0%
! TGTTGAAGAAATTGAAGAAA+GGG + chr5_1:68713569-68713588 Msa0746540:CDS 25.0%
!! TATACATGTCAGATCTTTTA+GGG - chr5_1:68713784-68713803 None:intergenic 25.0%
! CACTTTCTATGTACATTAAT+CGG - chr5_1:68713902-68713921 None:intergenic 25.0%
AACCTAATTGAATTGGAATG+AGG - chr5_1:68708961-68708980 None:intergenic 30.0%
! TGAAGTGTTTGGTTATTTGT+AGG + chr5_1:68709013-68709032 Msa0746540:intron 30.0%
AGTGATTATATCTCCTACAA+GGG + chr5_1:68709043-68709062 Msa0746540:CDS 30.0%
TTCGCTAAAGTCGAAATAAA+AGG - chr5_1:68709101-68709120 None:intergenic 30.0%
! GTTAAATCAATGCTACTTGT+TGG + chr5_1:68709122-68709141 Msa0746540:CDS 30.0%
AGCAGATATGAAGAAAATTG+AGG + chr5_1:68709160-68709179 Msa0746540:CDS 30.0%
ATGAAGAAAATTGAGGAAGA+AGG + chr5_1:68709167-68709186 Msa0746540:CDS 30.0%
GCATGATATTATGAATAGGA+TGG + chr5_1:68709223-68709242 Msa0746540:CDS 30.0%
TTTGGATTTCAAAAGCTTTG+AGG + chr5_1:68709250-68709269 Msa0746540:CDS 30.0%
TCCAATAAGGATGTAGTAAT+TGG + chr5_1:68709333-68709352 Msa0746540:intron 30.0%
ACCAATTACTACATCCTTAT+TGG - chr5_1:68709337-68709356 None:intergenic 30.0%
TTACCAATGAAACACAGAAA+TGG + chr5_1:68709481-68709500 Msa0746540:intron 30.0%
TTGAATGTAATGTAAGGTGT+CGG + chr5_1:68709529-68709548 Msa0746540:intron 30.0%
!! TGTTCTAGAGAGAATATTTC+AGG + chr5_1:68709638-68709657 Msa0746540:intron 30.0%
GGATTTATTATTTGGTCATG+TGG + chr5_1:68709659-68709678 Msa0746540:intron 30.0%
TTCCTTATATTTGTGGCATT+TGG + chr5_1:68709726-68709745 Msa0746540:intron 30.0%
TCCTTATATTTGTGGCATTT+GGG + chr5_1:68709727-68709746 Msa0746540:intron 30.0%
GCTGATAGACTATTAGATAT+GGG + chr5_1:68709809-68709828 Msa0746540:CDS 30.0%
! ACATCTAATCTCTAGTTTAC+TGG - chr5_1:68710074-68710093 None:intergenic 30.0%
TAAACTAGAGATTAGATGTG+TGG + chr5_1:68710075-68710094 Msa0746540:intron 30.0%
!!! GTAGAATCCCTTCATTTTTT+TGG + chr5_1:68710122-68710141 Msa0746540:intron 30.0%
AAGCTCGAAAAGAAAAGAAA+AGG - chr5_1:68710261-68710280 None:intergenic 30.0%
TTTCAAAACTGACAAATGCT+TGG - chr5_1:68710580-68710599 None:intergenic 30.0%
TCATTTACATCCCTTTCAAA+TGG + chr5_1:68710732-68710751 Msa0746540:CDS 30.0%
! ATTTTCTATAAGTGTTCCAG+TGG - chr5_1:68710934-68710953 None:intergenic 30.0%
TGTTGTCTTCTTATTACCAA+AGG + chr5_1:68711061-68711080 Msa0746540:CDS 30.0%
! TACTGTGTTGTCATGTTTTA+TGG + chr5_1:68711301-68711320 Msa0746540:intron 30.0%
! TCATGTTTTATGGATGCAAT+AGG + chr5_1:68711311-68711330 Msa0746540:intron 30.0%
!! TAATGTGCTGATTACCTTAT+AGG + chr5_1:68711449-68711468 Msa0746540:intron 30.0%
ATTGATTGTCTAGGTAAACA+CGG + chr5_1:68711537-68711556 Msa0746540:intron 30.0%
TTGTTATCAGGGAATTGAAA+GGG - chr5_1:68711615-68711634 None:intergenic 30.0%
! TTTGTTATCAGGGAATTGAA+AGG - chr5_1:68711616-68711635 None:intergenic 30.0%
! ATCACTGCTCTTATATTTTC+AGG + chr5_1:68711742-68711761 Msa0746540:CDS 30.0%
AATATAGAAGCTAATCTCAC+GGG - chr5_1:68712137-68712156 None:intergenic 30.0%
ATTTGTTTCCCTGTTCAATT+AGG + chr5_1:68712174-68712193 Msa0746540:intron 30.0%
CTTTCATCTTGTTGAAGATA+TGG - chr5_1:68712329-68712348 None:intergenic 30.0%
! TTTTAAGCATAACAAGCTCT+CGG - chr5_1:68712441-68712460 None:intergenic 30.0%
TGTTAGGTGAAACTCATTAA+TGG + chr5_1:68712615-68712634 Msa0746540:intron 30.0%
ATTCAAATTGAGCTTCAGAT+TGG + chr5_1:68712926-68712945 Msa0746540:intron 30.0%
TTCAAATTGAGCTTCAGATT+GGG + chr5_1:68712927-68712946 Msa0746540:intron 30.0%
! TTCTTCAAGATACTTTGAAG+AGG + chr5_1:68713042-68713061 Msa0746540:intron 30.0%
! TCTTCAAGATACTTTGAAGA+GGG + chr5_1:68713043-68713062 Msa0746540:intron 30.0%
TTCTTTGTTGATCTTGATTG+AGG + chr5_1:68713100-68713119 Msa0746540:intron 30.0%
TCTTTGTTGATCTTGATTGA+GGG + chr5_1:68713101-68713120 Msa0746540:intron 30.0%
TGTACTTGGAATAAGTTAGA+AGG - chr5_1:68713205-68713224 None:intergenic 30.0%
! AACGAGTTAAAAAGTGTACT+TGG - chr5_1:68713219-68713238 None:intergenic 30.0%
!!! CTCTTTGGTTTTTTAGGTTT+TGG - chr5_1:68713448-68713467 None:intergenic 30.0%
TCTTCAATTTCTTCAACAAC+CGG - chr5_1:68713567-68713586 None:intergenic 30.0%
!! ATATGTTGTTGGTGTTGTAA+TGG + chr5_1:68713681-68713700 Msa0746540:three_prime_UTR 30.0%
! ATACATGTCAGATCTTTTAG+GGG - chr5_1:68713783-68713802 None:intergenic 30.0%
! GTATACATGTCAGATCTTTT+AGG - chr5_1:68713785-68713804 None:intergenic 30.0%
CGATTAATGTACATAGAAAG+TGG + chr5_1:68713900-68713919 Msa0746540:three_prime_UTR 30.0%
TAGAAGTCGAATTATGTTCA+AGG + chr5_1:68714115-68714134 Msa0746540:three_prime_UTR 30.0%
! TAAACAAAGTGTCAAAGTCA+TGG + chr5_1:68714153-68714172 Msa0746540:three_prime_UTR 30.0%
! TTGAGGTTAATGCTTTGTTG+GGG - chr5_1:68708699-68708718 None:intergenic 35.0%
! GTTGAGGTTAATGCTTTGTT+GGG - chr5_1:68708700-68708719 None:intergenic 35.0%
AGTTGAGGTTAATGCTTTGT+TGG - chr5_1:68708701-68708720 None:intergenic 35.0%
ATTGAATTGGAATGAGGAGA+GGG - chr5_1:68708955-68708974 None:intergenic 35.0%
AATTGAATTGGAATGAGGAG+AGG - chr5_1:68708956-68708975 None:intergenic 35.0%
CTCCTCATTCCAATTCAATT+AGG + chr5_1:68708956-68708975 Msa0746540:intron 35.0%
TTTGGTTATTTGTAGGTGCT+TGG + chr5_1:68709020-68709039 Msa0746540:intron 35.0%
GAGTGATTATATCTCCTACA+AGG + chr5_1:68709042-68709061 Msa0746540:CDS 35.0%
! AAATCAATGCTACTTGTTGG+TGG + chr5_1:68709125-68709144 Msa0746540:CDS 35.0%
! GAAGGAGCAAATGTATTGAT+TGG + chr5_1:68709185-68709204 Msa0746540:CDS 35.0%
GGTTACAAATTAGGCTTAGA+TGG + chr5_1:68709379-68709398 Msa0746540:intron 35.0%
GCAATATAGTGTGTTCCTAT+TGG + chr5_1:68709401-68709420 Msa0746540:intron 35.0%
! TTGCCATTTCTGTGTTTCAT+TGG - chr5_1:68709487-68709506 None:intergenic 35.0%
! ATGCTTTCAATCAGAAGTGT+CGG + chr5_1:68709577-68709596 Msa0746540:intron 35.0%
ACCCAAATGCCACAAATATA+AGG - chr5_1:68709731-68709750 None:intergenic 35.0%
TGTGGCATTTGGGTATTAAT+AGG + chr5_1:68709737-68709756 Msa0746540:intron 35.0%
!!! GTGTGTGCAGATTTTGATTT+TGG + chr5_1:68709781-68709800 Msa0746540:intron 35.0%
!!! GCAGATTTTGATTTTGGATG+AGG + chr5_1:68709787-68709806 Msa0746540:intron 35.0%
GGCTGATAGACTATTAGATA+TGG + chr5_1:68709808-68709827 Msa0746540:CDS 35.0%
TGATAGCATTTATCTGCTTC+TGG - chr5_1:68709838-68709857 None:intergenic 35.0%
! ACATTGAGGTATTACCTATG+TGG + chr5_1:68710044-68710063 Msa0746540:intron 35.0%
!! TTTTTGAGCGGTTCTTAACA+AGG - chr5_1:68710335-68710354 None:intergenic 35.0%
!! TTGTGCTTGTGTTGACTATT+GGG + chr5_1:68710461-68710480 Msa0746540:CDS 35.0%
AGAAGCCTTTCAAAACAGAA+AGG - chr5_1:68710503-68710522 None:intergenic 35.0%
ATCATACTGTGGAATAACAG+AGG - chr5_1:68710970-68710989 None:intergenic 35.0%
AATCTATGTCAATGTGTAGG+AGG + chr5_1:68711163-68711182 Msa0746540:intron 35.0%
TATAACATCAGGTGCATTGT+CGG - chr5_1:68711246-68711265 None:intergenic 35.0%
TTATACCCGAGGTTTATTCT+CGG + chr5_1:68711261-68711280 Msa0746540:intron 35.0%
TAAAAGCCGAGAATAAACCT+CGG - chr5_1:68711270-68711289 None:intergenic 35.0%
! TGTTTTATGGATGCAATAGG+AGG + chr5_1:68711314-68711333 Msa0746540:intron 35.0%
TCGATTGACAACCATAACAA+GGG - chr5_1:68711342-68711361 None:intergenic 35.0%
ATCGATTGACAACCATAACA+AGG - chr5_1:68711343-68711362 None:intergenic 35.0%
GAACTACCGTAATAGTATTC+CGG + chr5_1:68711387-68711406 Msa0746540:intron 35.0%
ACTCTACCGGAATACTATTA+CGG - chr5_1:68711396-68711415 None:intergenic 35.0%
!! TATTTCCATGTTGACTCTAC+CGG - chr5_1:68711409-68711428 None:intergenic 35.0%
CACATTAGTATGTTGTAGCA+GGG - chr5_1:68711436-68711455 None:intergenic 35.0%
TGATTACCTTATAGGCTGAA+TGG + chr5_1:68711457-68711476 Msa0746540:intron 35.0%
CATGTTCACAAAGAAGAACT+GGG - chr5_1:68711571-68711590 None:intergenic 35.0%
TCATGTTCACAAAGAAGAAC+TGG - chr5_1:68711572-68711591 None:intergenic 35.0%
!! AATGTTTTAGATTCGTTCCG+CGG + chr5_1:68711647-68711666 Msa0746540:intron 35.0%
AACAAAAGATCGTGATGTCA+TGG + chr5_1:68711671-68711690 Msa0746540:CDS 35.0%
AGGTGGAAAGAACTTGAAAT+TGG + chr5_1:68711841-68711860 Msa0746540:intron 35.0%
TGAAATTGGCAAATTAGCCA+CGG + chr5_1:68711855-68711874 Msa0746540:CDS 35.0%
! TTTAACTGGTTCAAATCCCA+CGG - chr5_1:68711938-68711957 None:intergenic 35.0%
ATTTCGAGGAGATTAGATTC+AGG + chr5_1:68711965-68711984 Msa0746540:CDS 35.0%
CTGCTAATCCTAATTGAACA+GGG - chr5_1:68712185-68712204 None:intergenic 35.0%
ACTGCTAATCCTAATTGAAC+AGG - chr5_1:68712186-68712205 None:intergenic 35.0%
! AGTCTTGTCTCCCTATAAAT+AGG + chr5_1:68712203-68712222 Msa0746540:intron 35.0%
GTCTTGTCTCCCTATAAATA+GGG + chr5_1:68712204-68712223 Msa0746540:intron 35.0%
TCTTGTCTCCCTATAAATAG+GGG + chr5_1:68712205-68712224 Msa0746540:intron 35.0%
AGCAGTAACCCCTATTTATA+GGG - chr5_1:68712216-68712235 None:intergenic 35.0%
AAGCAGTAACCCCTATTTAT+AGG - chr5_1:68712217-68712236 None:intergenic 35.0%
!! TACTGCTTAACCTTTTGGAA+TGG + chr5_1:68712229-68712248 Msa0746540:intron 35.0%
GATAATCAGACCATTCCAAA+AGG - chr5_1:68712242-68712261 None:intergenic 35.0%
AGCTTATTATATCTAGCACG+CGG + chr5_1:68712413-68712432 Msa0746540:intron 35.0%
TTTAAGCATAACAAGCTCTC+GGG - chr5_1:68712440-68712459 None:intergenic 35.0%
AAATTCAGCACAAGTTTAGG+TGG - chr5_1:68712482-68712501 None:intergenic 35.0%
TTTGAAAATAGAAGTGGCCA+TGG + chr5_1:68712516-68712535 Msa0746540:intron 35.0%
ATAAGTAGGAGTTTGATCCA+TGG - chr5_1:68712536-68712555 None:intergenic 35.0%
GGATCAAACTCCTACTTATT+TGG + chr5_1:68712537-68712556 Msa0746540:intron 35.0%
GTCTCTATGACCAAATAAGT+AGG - chr5_1:68712550-68712569 None:intergenic 35.0%
! TGAGCTCAAGTACTTTTCTA+TGG - chr5_1:68712804-68712823 None:intergenic 35.0%
TCAAATTGAGCTTCAGATTG+GGG + chr5_1:68712928-68712947 Msa0746540:intron 35.0%
! CTTCAAGATACTTTGAAGAG+GGG + chr5_1:68713044-68713063 Msa0746540:intron 35.0%
TGATCTTGATTGAGGGATTA+TGG + chr5_1:68713108-68713127 Msa0746540:intron 35.0%
GATCTTGATTGAGGGATTAT+GGG + chr5_1:68713109-68713128 Msa0746540:intron 35.0%
!!! GGAGTTCTCTTTGGTTTTTT+AGG - chr5_1:68713454-68713473 None:intergenic 35.0%
TTTAGCTGTTTGCTTTCTCA+TGG - chr5_1:68713491-68713510 None:intergenic 35.0%
GAATGTTCTTAGATAACCAG+TGG + chr5_1:68713717-68713736 Msa0746540:three_prime_UTR 35.0%
GACATGTATACATCTTACAC+TGG + chr5_1:68713794-68713813 Msa0746540:three_prime_UTR 35.0%
AGTGGGAGCAAACAAAATTT+GGG - chr5_1:68714012-68714031 None:intergenic 35.0%
TAGTGGGAGCAAACAAAATT+TGG - chr5_1:68714013-68714032 None:intergenic 35.0%
! GTTCCTTTGTTTAGTCTGAT+AGG + chr5_1:68714076-68714095 Msa0746540:three_prime_UTR 35.0%
CATCCTATCAGACTAAACAA+AGG - chr5_1:68714082-68714101 None:intergenic 35.0%
! TAATGCTTTGTTGGGGAACT+CGG - chr5_1:68708692-68708711 None:intergenic 40.0%
TCTTTGTAGCTGCAGAGTAA+GGG - chr5_1:68708823-68708842 None:intergenic 40.0%
AAGTGGAATGACGAAAGCTA+GGG - chr5_1:68708881-68708900 None:intergenic 40.0%
!! AAATGTATTGATTGGCACGC+CGG + chr5_1:68709193-68709212 Msa0746540:CDS 40.0%
ATAATATCATGCAATCGCCC+CGG - chr5_1:68709215-68709234 None:intergenic 40.0%
! TTTTACGCTGACGTCCAATA+AGG + chr5_1:68709320-68709339 Msa0746540:intron 40.0%
AGTGTGTTCCTATTGGATGT+CGG + chr5_1:68709408-68709427 Msa0746540:intron 40.0%
!! ATTTTGCACCGACATCCAAT+AGG - chr5_1:68709419-68709438 None:intergenic 40.0%
! CTTCTGATTGAAAGCATGTC+TGG - chr5_1:68709574-68709593 None:intergenic 40.0%
ATTCTCTGCTACTCAAACTC+AGG + chr5_1:68709892-68709911 Msa0746540:CDS 40.0%
AGGAAATCTACAAGCTGTGA+CGG - chr5_1:68710315-68710334 None:intergenic 40.0%
!! CTTGTGCTTGTGTTGACTAT+TGG + chr5_1:68710460-68710479 Msa0746540:CDS 40.0%
!! TGTGCTTGTGTTGACTATTG+GGG + chr5_1:68710462-68710481 Msa0746540:CDS 40.0%
CTGCTTCATCTTTCCATGAA+GGG - chr5_1:68710535-68710554 None:intergenic 40.0%
TATATAGTCTGTCAGGGAGA+AGG + chr5_1:68710701-68710720 Msa0746540:intron 40.0%
ACCCAAATGTGTTCGTACAT+AGG + chr5_1:68711000-68711019 Msa0746540:CDS 40.0%
CCCTATGTACGAACACATTT+GGG - chr5_1:68711004-68711023 None:intergenic 40.0%
CCCAAATGTGTTCGTACATA+GGG + chr5_1:68711001-68711020 Msa0746540:CDS 40.0%
ACCCTATGTACGAACACATT+TGG - chr5_1:68711005-68711024 None:intergenic 40.0%
AATGTGTTCGTACATAGGGT+TGG + chr5_1:68711005-68711024 Msa0746540:CDS 40.0%
GATACTTGTGACAACACCTT+TGG - chr5_1:68711080-68711099 None:intergenic 40.0%
TAAACCTCGGGTATAACATC+AGG - chr5_1:68711257-68711276 None:intergenic 40.0%
AAAAGCCGAGAATAAACCTC+GGG - chr5_1:68711269-68711288 None:intergenic 40.0%
AATAGGAGGATCCCTTGTTA+TGG + chr5_1:68711328-68711347 Msa0746540:intron 40.0%
GCACATTAGTATGTTGTAGC+AGG - chr5_1:68711437-68711456 None:intergenic 40.0%
TGAACTGTTCTCACTCTTAC+AGG + chr5_1:68711821-68711840 Msa0746540:intron 40.0%
GAAATTGGCAAATTAGCCAC+GGG + chr5_1:68711856-68711875 Msa0746540:CDS 40.0%
ATTGCAACTTCCTTTAGTGC+CGG + chr5_1:68711888-68711907 Msa0746540:CDS 40.0%
AGCTCACGAATGAGCTTATT+AGG + chr5_1:68712347-68712366 Msa0746540:intron 40.0%
AAGTGAGAAGGTTCTTGTCA+TGG - chr5_1:68712590-68712609 None:intergenic 40.0%
! TTGTTACATTTTCCAAGGGG+AGG + chr5_1:68712717-68712736 Msa0746540:intron 40.0%
! TGTTACATTTTCCAAGGGGA+GGG + chr5_1:68712718-68712737 Msa0746540:intron 40.0%
! AAGATACTTTGAAGAGGGGA+GGG + chr5_1:68713048-68713067 Msa0746540:intron 40.0%
TGGCTTCTTTCTTTACTTGC+AGG - chr5_1:68713414-68713433 None:intergenic 40.0%
!!! AGGTTTTGGCTCTTTCTCTT+TGG - chr5_1:68713434-68713453 None:intergenic 40.0%
TAAGCAGACAGTTGAAGATG+AGG + chr5_1:68713522-68713541 Msa0746540:CDS 40.0%
AAGAGTTGACGCAAGAATAC+CGG + chr5_1:68713545-68713564 Msa0746540:CDS 40.0%
GGCATATTCATCCTCATCTA+TGG - chr5_1:68713596-68713615 None:intergenic 40.0%
! GATGAATATGCCAAGTTGAC+AGG + chr5_1:68713604-68713623 Msa0746540:CDS 40.0%
CATAACAGCGTAATCAGACA+TGG - chr5_1:68713660-68713679 None:intergenic 40.0%
CATGTCTGATTACGCTGTTA+TGG + chr5_1:68713658-68713677 Msa0746540:three_prime_UTR 40.0%
CGCTGTTATGGATATGTTGT+TGG + chr5_1:68713670-68713689 Msa0746540:three_prime_UTR 40.0%
!! TGTTGTTGGTGTTGTAATGG+TGG + chr5_1:68713684-68713703 Msa0746540:three_prime_UTR 40.0%
GCTGTAATATACTAGTCCAC+TGG - chr5_1:68713736-68713755 None:intergenic 40.0%
GTAACGAAAGTTCCAGAGTT+CGG + chr5_1:68713816-68713835 Msa0746540:three_prime_UTR 40.0%
ATCGGCAACAAAATGGAAGT+CGG - chr5_1:68713846-68713865 None:intergenic 40.0%
TCTCTCTATCGGCAACAAAA+TGG - chr5_1:68713853-68713872 None:intergenic 40.0%
AATCGGTAAATGTCACTCAC+CGG - chr5_1:68713885-68713904 None:intergenic 40.0%
!! TTTGGAAAGGTACTAGTCCT+TGG + chr5_1:68713937-68713956 Msa0746540:three_prime_UTR 40.0%
GTCTATCTTTCTCTGATCCA+AGG - chr5_1:68713957-68713976 None:intergenic 40.0%
TGTTTAGTCTGATAGGATGC+AGG + chr5_1:68714083-68714102 Msa0746540:three_prime_UTR 40.0%
TCTGTGAGAGCTTGAAGAAC+GGG - chr5_1:68708757-68708776 None:intergenic 45.0%
GTCTGTGAGAGCTTGAAGAA+CGG - chr5_1:68708758-68708777 None:intergenic 45.0%
CTTTGTAGCTGCAGAGTAAG+GGG - chr5_1:68708822-68708841 None:intergenic 45.0%
GTCTTTGTAGCTGCAGAGTA+AGG - chr5_1:68708824-68708843 None:intergenic 45.0%
! GACGAAAGCTAGGGTTTTAC+CGG - chr5_1:68708872-68708891 None:intergenic 45.0%
CAAGTGGAATGACGAAAGCT+AGG - chr5_1:68708882-68708901 None:intergenic 45.0%
CACTTGTCGAAATTCTTCGC+CGG + chr5_1:68708896-68708915 Msa0746540:CDS 45.0%
! AATGCTACTTGTTGGTGGAG+TGG + chr5_1:68709130-68709149 Msa0746540:CDS 45.0%
!! AATGTATTGATTGGCACGCC+GGG + chr5_1:68709194-68709213 Msa0746540:CDS 45.0%
!! GTAATGTAAGGTGTCGGTGT+CGG + chr5_1:68709535-68709554 Msa0746540:intron 45.0%
!! TAATGTAAGGTGTCGGTGTC+GGG + chr5_1:68709536-68709555 Msa0746540:intron 45.0%
!! CTTTCAATCAGAAGTGTCGG+TGG + chr5_1:68709580-68709599 Msa0746540:intron 45.0%
TTGCCTAAGCTTCGAAGAAC+TGG + chr5_1:68709866-68709885 Msa0746540:CDS 45.0%
AAGCCAGTTCTTCGAAGCTT+AGG - chr5_1:68709872-68709891 None:intergenic 45.0%
AGGATTCCTCAATCCTGCTT+TGG - chr5_1:68709933-68709952 None:intergenic 45.0%
AGGATTGAGGAATCCTGTGA+GGG + chr5_1:68709937-68709956 Msa0746540:CDS 45.0%
GAGTCTTCAAAGACACCTTC+AGG + chr5_1:68710016-68710035 Msa0746540:CDS 45.0%
ACCTTCAGGTCTTCACATTG+AGG + chr5_1:68710030-68710049 Msa0746540:CDS 45.0%
ACCTCAATGTGAAGACCTGA+AGG - chr5_1:68710034-68710053 None:intergenic 45.0%
AGTTTACTGGCATGCCACAT+AGG - chr5_1:68710061-68710080 None:intergenic 45.0%
!! TGGATTATAGTAAGAGCGCC+AGG - chr5_1:68710170-68710189 None:intergenic 45.0%
!! CTTTTCGAGCTTGCAGTACT+TGG + chr5_1:68710269-68710288 Msa0746540:intron 45.0%
CTTGCAGTACTTGGAATGTG+AGG + chr5_1:68710278-68710297 Msa0746540:intron 45.0%
!! TTGTGTTGACTATTGGGGAG+TGG + chr5_1:68710467-68710486 Msa0746540:CDS 45.0%
CCTTTCAAAACAGAAAGGCG+AGG - chr5_1:68710498-68710517 None:intergenic 45.0%
!! CCTCGCCTTTCTGTTTTGAA+AGG + chr5_1:68710495-68710514 Msa0746540:CDS 45.0%
TTCTCCTTGATCTCCCTTCA+TGG + chr5_1:68710519-68710538 Msa0746540:CDS 45.0%
CTTTCCATGAAGGGAGATCA+AGG - chr5_1:68710526-68710545 None:intergenic 45.0%
CCTGCTTCATCTTTCCATGA+AGG - chr5_1:68710536-68710555 None:intergenic 45.0%
CCTTCATGGAAAGATGAAGC+AGG + chr5_1:68710533-68710552 Msa0746540:CDS 45.0%
TGCACTATACAGTCTACACC+AGG - chr5_1:68710801-68710820 None:intergenic 45.0%
TGGTGTAGACTGTATAGTGC+AGG + chr5_1:68710800-68710819 Msa0746540:CDS 45.0%
TCTTGAGGAGGATCATACTG+TGG - chr5_1:68710981-68711000 None:intergenic 45.0%
AACACATTTGGGTCTTGAGG+AGG - chr5_1:68710993-68711012 None:intergenic 45.0%
ACGAACACATTTGGGTCTTG+AGG - chr5_1:68710996-68711015 None:intergenic 45.0%
GAGCACATTCTCTCTTGAAG+AGG - chr5_1:68711224-68711243 None:intergenic 45.0%
GTATTCCGGTAGAGTCAACA+TGG + chr5_1:68711401-68711420 Msa0746540:intron 45.0%
GATCAGCCATTCAGCCTATA+AGG - chr5_1:68711466-68711485 None:intergenic 45.0%
TCACAAAGAAGAACTGGGAC+TGG - chr5_1:68711566-68711585 None:intergenic 45.0%
! ATCACGATCTTTTGTTGCCG+CGG - chr5_1:68711667-68711686 None:intergenic 45.0%
AGATCGTGATGTCATGGAGA+AGG + chr5_1:68711677-68711696 Msa0746540:CDS 45.0%
GATCGTGATGTCATGGAGAA+GGG + chr5_1:68711678-68711697 Msa0746540:CDS 45.0%
ACTGTTCTCACTCTTACAGG+TGG + chr5_1:68711824-68711843 Msa0746540:intron 45.0%
! CGTTTTATCTCCGGCACTAA+AGG - chr5_1:68711901-68711920 None:intergenic 45.0%
! AGTGAGTGGCGTTTTATCTC+CGG - chr5_1:68711910-68711929 None:intergenic 45.0%
! GGGGTTACTGCTTAACCTTT+TGG + chr5_1:68712224-68712243 Msa0746540:intron 45.0%
CCTAACAGCTTGAAGTGAGA+AGG - chr5_1:68712602-68712621 None:intergenic 45.0%
CCTTCTCACTTCAAGCTGTT+AGG + chr5_1:68712599-68712618 Msa0746540:intron 45.0%
AAGTACTTGAGCTCAGCAGT+TGG + chr5_1:68712809-68712828 Msa0746540:intron 45.0%
! CAAGATACTTTGAAGAGGGG+AGG + chr5_1:68713047-68713066 Msa0746540:intron 45.0%
CTTGATTGAGGGATTATGGG+TGG + chr5_1:68713112-68713131 Msa0746540:intron 45.0%
GGTACTTCAGGAGTTCTCTT+TGG - chr5_1:68713463-68713482 None:intergenic 45.0%
GTTTGCTTTCTCATGGCAGT+AGG - chr5_1:68713484-68713503 None:intergenic 45.0%
GAAGAAAGGGACCATAGATG+AGG + chr5_1:68713582-68713601 Msa0746540:CDS 45.0%
GCATCCTCACATGATTCTGT+TGG + chr5_1:68713754-68713773 Msa0746540:three_prime_UTR 45.0%
GATGCCAACAGAATCATGTG+AGG - chr5_1:68713761-68713780 None:intergenic 45.0%
GGCTGATAAGGTCTCTCTAT+CGG - chr5_1:68713864-68713883 None:intergenic 45.0%
GATAGAGAGACCTTATCAGC+CGG + chr5_1:68713863-68713882 Msa0746540:three_prime_UTR 45.0%
GACAGTGCAGAGATTTGGAA+AGG + chr5_1:68713924-68713943 Msa0746540:three_prime_UTR 45.0%
GGCGTTCAGTATCTTTGTCG+AGG - chr5_1:68708656-68708675 None:intergenic 50.0%
TAGGTCGGAGAAACGAGTTG+AGG - chr5_1:68708716-68708735 None:intergenic 50.0%
!!! GGAGAGTGGTGGTTTTAGGT+CGG - chr5_1:68708731-68708750 None:intergenic 50.0%
! GTTCGGAGAGTGGTGGTTTT+AGG - chr5_1:68708735-68708754 None:intergenic 50.0%
! GAGAGCTTGAAGAACGGGTT+CGG - chr5_1:68708752-68708771 None:intergenic 50.0%
! AGCTAGGGTTTTACCGGAAC+CGG - chr5_1:68708866-68708885 None:intergenic 50.0%
CGGCGAAGAATTTCGACAAG+TGG - chr5_1:68708898-68708917 None:intergenic 50.0%
!! GTTTGGGATTGGAAGCGTTC+CGG - chr5_1:68708918-68708937 None:intergenic 50.0%
TTCCAATCCCAAACCTCACC+AGG + chr5_1:68708924-68708943 Msa0746540:CDS 50.0%
! AACCTGGTGAGGTTTGGGAT+TGG - chr5_1:68708929-68708948 None:intergenic 50.0%
GAATTGGAATGAGGAGAGGG+AGG - chr5_1:68708952-68708971 None:intergenic 50.0%
TGCGACGCTAATTCCCTTGT+AGG - chr5_1:68709059-68709078 None:intergenic 50.0%
!! ATGTATTGATTGGCACGCCG+GGG + chr5_1:68709195-68709214 Msa0746540:CDS 50.0%
TGCTACTCAAACTCAGGCTG+TGG + chr5_1:68709898-68709917 Msa0746540:CDS 50.0%
AGCTTGCCAAAGCAGGATTG+AGG + chr5_1:68709924-68709943 Msa0746540:CDS 50.0%
CAGGATTGAGGAATCCTGTG+AGG + chr5_1:68709936-68709955 Msa0746540:CDS 50.0%
TTTAGCAGCGAGTCTTTGCC+TGG + chr5_1:68710149-68710168 Msa0746540:intron 50.0%
!! ATAGGGTTGGTCGAACTGCT+CGG + chr5_1:68711018-68711037 Msa0746540:CDS 50.0%
TGCACCTGATGTTATACCCG+AGG + chr5_1:68711250-68711269 Msa0746540:CDS 50.0%
ATGTCATGGAGAAGGGAGTC+AGG + chr5_1:68711685-68711704 Msa0746540:CDS 50.0%
TGTCATGGAGAAGGGAGTCA+GGG + chr5_1:68711686-68711705 Msa0746540:CDS 50.0%
TTGCAATAAGCCATGTCCCG+TGG - chr5_1:68711875-68711894 None:intergenic 50.0%
! AACTGGTTCAAATCCCACGG+TGG - chr5_1:68711935-68711954 None:intergenic 50.0%
TTCATCAATTGCCCTCCCCT+TGG - chr5_1:68712732-68712751 None:intergenic 50.0%
! ACTTTGAAGAGGGGAGGGAT+TGG + chr5_1:68713053-68713072 Msa0746540:intron 50.0%
! CTTTGAAGAGGGGAGGGATT+GGG + chr5_1:68713054-68713073 Msa0746540:intron 50.0%
CTCATGGCAGTAGGTACTTC+AGG - chr5_1:68713475-68713494 None:intergenic 50.0%
ATCCTCTGTGCCTGTCAACT+TGG - chr5_1:68713617-68713636 None:intergenic 50.0%
! GTGTTGTAATGGTGGAGTGC+TGG + chr5_1:68713692-68713711 Msa0746540:three_prime_UTR 50.0%
ACGAAAGTTCCAGAGTTCGG+AGG + chr5_1:68713819-68713838 Msa0746540:three_prime_UTR 50.0%
! ATGTCACTCACCGGCTGATA+AGG - chr5_1:68713876-68713895 None:intergenic 50.0%
GTGGTGACAGTGCAGAGATT+TGG + chr5_1:68713919-68713938 Msa0746540:three_prime_UTR 50.0%
GATACTGAACGCCGCAACCA+TGG + chr5_1:68708663-68708682 Msa0746540:exon 55.0%
GAACTCGGAGTCCATGGTTG+CGG - chr5_1:68708677-68708696 None:intergenic 55.0%
! TGAAGAACGGGTTCGGAGAG+TGG - chr5_1:68708745-68708764 None:intergenic 55.0%
! GCAGAGTAAGGGGATAGTGG+CGG - chr5_1:68708812-68708831 None:intergenic 55.0%
GCTGCAGAGTAAGGGGATAG+TGG - chr5_1:68708815-68708834 None:intergenic 55.0%
! TAGGGTTTTACCGGAACCGG+TGG - chr5_1:68708863-68708882 None:intergenic 55.0%
GGAGGAACCTGGTGAGGTTT+GGG - chr5_1:68708934-68708953 None:intergenic 55.0%
AATGAGGAGAGGGAGGAACC+TGG - chr5_1:68708945-68708964 None:intergenic 55.0%
!! GTGTCGGTGTCGGGCATTAT+TGG + chr5_1:68709545-68709564 Msa0746540:intron 55.0%
GTGGAAGAGCTTGCCAAAGC+AGG + chr5_1:68709917-68709936 Msa0746540:CDS 55.0%
GCTCGAACTTCAACCCTCAC+AGG - chr5_1:68709953-68709972 None:intergenic 55.0%
TGTACGGATGTTGCAGCACG+TGG + chr5_1:68710765-68710784 Msa0746540:CDS 55.0%
GCACGTGGACTTGACATACC+TGG + chr5_1:68710780-68710799 Msa0746540:CDS 55.0%
ACTGCTCGGCTGGGTAAACA+AGG + chr5_1:68711032-68711051 Msa0746540:CDS 55.0%
CTGCTCGGCTGGGTAAACAA+GGG + chr5_1:68711033-68711052 Msa0746540:CDS 55.0%
GGCAAATTAGCCACGGGACA+TGG + chr5_1:68711862-68711881 Msa0746540:CDS 55.0%
ATCCCACGGTGGATAGTGAG+TGG - chr5_1:68711924-68711943 None:intergenic 55.0%
CTTGAGCTCAGCAGTTGGCT+CGG + chr5_1:68712814-68712833 Msa0746540:intron 55.0%
! TTGAGCTCAGCAGTTGGCTC+GGG + chr5_1:68712815-68712834 Msa0746540:intron 55.0%
! TGCCAAGTTGACAGGCACAG+AGG + chr5_1:68713612-68713631 Msa0746540:CDS 55.0%
GTTGGGGAACTCGGAGTCCA+TGG - chr5_1:68708683-68708702 None:intergenic 60.0%
! AGAACGGGTTCGGAGAGTGG+TGG - chr5_1:68708742-68708761 None:intergenic 60.0%
! GATAGTGGCGGCTTGAACGG+GGG - chr5_1:68708800-68708819 None:intergenic 60.0%
! GGATAGTGGCGGCTTGAACG+GGG - chr5_1:68708801-68708820 None:intergenic 60.0%
! GGGATAGTGGCGGCTTGAAC+GGG - chr5_1:68708802-68708821 None:intergenic 60.0%
! GGGGATAGTGGCGGCTTGAA+CGG - chr5_1:68708803-68708822 None:intergenic 60.0%
! GGTTTTACCGGAACCGGTGG+CGG - chr5_1:68708860-68708879 None:intergenic 60.0%
GGGAGGAACCTGGTGAGGTT+TGG - chr5_1:68708935-68708954 None:intergenic 60.0%
GTTGGTCGAACTGCTCGGCT+GGG + chr5_1:68711023-68711042 Msa0746540:CDS 60.0%
ACGCCACTCACTATCCACCG+TGG + chr5_1:68711918-68711937 Msa0746540:CDS 60.0%
CGCCACTCACTATCCACCGT+GGG + chr5_1:68711919-68711938 Msa0746540:CDS 60.0%
GAAGTCGGTCCTCCGAACTC+TGG - chr5_1:68713831-68713850 None:intergenic 60.0%
GGAGAGGGAGGAACCTGGTG+AGG - chr5_1:68708940-68708959 None:intergenic 65.0%
! GGTTGGTCGAACTGCTCGGC+TGG + chr5_1:68711022-68711041 Msa0746540:CDS 65.0%
! GGAACCGGTGGCGGCATCGA+CGG - chr5_1:68708851-68708870 None:intergenic 70.0%
!! GTCGATGCCGCCACCGGTTC+CGG + chr5_1:68708850-68708869 Msa0746540:CDS 70.0%
GTCGCCGTCGATGCCGCCAC+CGG + chr5_1:68708844-68708863 Msa0746540:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 68708647 68714231 68708647 ID=Msa0746540;Name=Msa0746540
chr5_1 mRNA 68708647 68714231 68708647 ID=Msa0746540-mRNA-1;Parent=Msa0746540;Name=Msa0746540-mRNA-1;_AED=0.15;_eAED=0.15;_QI=35|0.81|0.91|0.91|1|1|12|586|605
chr5_1 exon 68708647 68708945 68708647 ID=Msa0746540-mRNA-1:exon:20498;Parent=Msa0746540-mRNA-1
chr5_1 exon 68709035 68709271 68709035 ID=Msa0746540-mRNA-1:exon:20499;Parent=Msa0746540-mRNA-1
chr5_1 exon 68709791 68710051 68709791 ID=Msa0746540-mRNA-1:exon:20500;Parent=Msa0746540-mRNA-1
chr5_1 exon 68710157 68710204 68710157 ID=Msa0746540-mRNA-1:exon:20501;Parent=Msa0746540-mRNA-1
chr5_1 exon 68710285 68710364 68710285 ID=Msa0746540-mRNA-1:exon:20502;Parent=Msa0746540-mRNA-1
chr5_1 exon 68710449 68710554 68710449 ID=Msa0746540-mRNA-1:exon:20503;Parent=Msa0746540-mRNA-1
chr5_1 exon 68710708 68710821 68710708 ID=Msa0746540-mRNA-1:exon:20504;Parent=Msa0746540-mRNA-1
chr5_1 exon 68710984 68711082 68710984 ID=Msa0746540-mRNA-1:exon:20505;Parent=Msa0746540-mRNA-1
chr5_1 exon 68711182 68711271 68711182 ID=Msa0746540-mRNA-1:exon:20506;Parent=Msa0746540-mRNA-1
chr5_1 exon 68711657 68711763 68711657 ID=Msa0746540-mRNA-1:exon:20507;Parent=Msa0746540-mRNA-1
chr5_1 exon 68711843 68711986 68711843 ID=Msa0746540-mRNA-1:exon:20508;Parent=Msa0746540-mRNA-1
chr5_1 exon 68713378 68714231 68713378 ID=Msa0746540-mRNA-1:exon:20509;Parent=Msa0746540-mRNA-1
chr5_1 five_prime_UTR 68708647 68708681 68708647 ID=Msa0746540-mRNA-1:five_prime_utr;Parent=Msa0746540-mRNA-1
chr5_1 CDS 68708682 68708945 68708682 ID=Msa0746540-mRNA-1:cds;Parent=Msa0746540-mRNA-1
chr5_1 CDS 68709035 68709271 68709035 ID=Msa0746540-mRNA-1:cds;Parent=Msa0746540-mRNA-1
chr5_1 CDS 68709791 68710051 68709791 ID=Msa0746540-mRNA-1:cds;Parent=Msa0746540-mRNA-1
chr5_1 CDS 68710157 68710204 68710157 ID=Msa0746540-mRNA-1:cds;Parent=Msa0746540-mRNA-1
chr5_1 CDS 68710285 68710364 68710285 ID=Msa0746540-mRNA-1:cds;Parent=Msa0746540-mRNA-1
chr5_1 CDS 68710449 68710554 68710449 ID=Msa0746540-mRNA-1:cds;Parent=Msa0746540-mRNA-1
chr5_1 CDS 68710708 68710821 68710708 ID=Msa0746540-mRNA-1:cds;Parent=Msa0746540-mRNA-1
chr5_1 CDS 68710984 68711082 68710984 ID=Msa0746540-mRNA-1:cds;Parent=Msa0746540-mRNA-1
chr5_1 CDS 68711182 68711271 68711182 ID=Msa0746540-mRNA-1:cds;Parent=Msa0746540-mRNA-1
chr5_1 CDS 68711657 68711763 68711657 ID=Msa0746540-mRNA-1:cds;Parent=Msa0746540-mRNA-1
chr5_1 CDS 68711843 68711986 68711843 ID=Msa0746540-mRNA-1:cds;Parent=Msa0746540-mRNA-1
chr5_1 CDS 68713378 68713645 68713378 ID=Msa0746540-mRNA-1:cds;Parent=Msa0746540-mRNA-1
chr5_1 three_prime_UTR 68713646 68714231 68713646 ID=Msa0746540-mRNA-1:three_prime_utr;Parent=Msa0746540-mRNA-1
Gene Sequence

>Msa0746540

ATGGACTCCGAGTTCCCCAACAAAGCATTAACCTCAACTCGTTTCTCCGACCTAAAACCACCACTCTCCGAACCCGTTCTTCAAGCTCTCACAGACTCAAACTTTGATTTCTGCACCCCCGTTCAAGCCGCCACTATCCCCTTACTCTGCAGCTACAAAGACGTCGCCGTCGATGCCGCCACCGGTTCCGGTAAAACCCTAGCTTTCGTCATTCCACTTGTCGAAATTCTTCGCCGGAACGCTTCCAATCCCAAACCTCACCAGGTGCTTGGAGTGATTATATCTCCTACAAGGGAATTAGCGTCGCAAATATATCATGTTGCACAGCCTTTTATTTCGACTTTAGCGAATGTTAAATCAATGCTACTTGTTGGTGGAGTGGAAGTGAAAGCAGATATGAAGAAAATTGAGGAAGAAGGAGCAAATGTATTGATTGGCACGCCGGGGCGATTGCATGATATTATGAATAGGATGGATATTTTGGATTTCAAAAGCTTTGAGATTTTGATTTTGGATGAGGCTGATAGACTATTAGATATGGGATTCCAGAAGCAGATAAATGCTATCATAACTGAGTTGCCTAAGCTTCGAAGAACTGGCTTATTCTCTGCTACTCAAACTCAGGCTGTGGAAGAGCTTGCCAAAGCAGGATTGAGGAATCCTGTGAGGGTTGAAGTTCGAGCTGAAACAAAAACAGCAAATGATTCTGCTGCATCAAAGAAAACAGAGTCTTCAAAGACACCTTCAGGTCTTCACATTGAGCGAGTCTTTGCCTGGCGCTCTTACTATAATCCATATAAGATGTTTCATTACTTGGAATGTGAGGCAGATAAGAAACCGTCACAGCTTGTAGATTTCCTTGTTAAGAACCGCTCAAAAAAAATTATAATATATTTCATGACTTGTGCTTGTGTTGACTATTGGGGAGTGGTTCTTCCTCGCCTTTCTGTTTTGAAAGGCTTCTCCTTGATCTCCCTTCATGGAAAGATGAAGCAGTCTGTCAGGGAGAAGGCACTAACTTCATTTACATCCCTTTCAAATGGAATTCTTTTGTGTACGGATGTTGCAGCACGTGGACTTGACATACCTGGTGTAGACTGTATAGTGCAGTATGATCCTCCTCAAGACCCAAATGTGTTCGTACATAGGGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGGCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCATATGTAGAATTCTTGCGTATACGAAGAGTTCCTCTTCAAGAGAGAATGTGCTCCGACAATGCACCTGATGTTATACCCGAGATTCGTTCCGCGGCAACAAAAGATCGTGATGTCATGGAGAAGGGAGTCAGGGCATTTGTTTCTTACATTCGCGCTTATAAAGAGCATCACTGCTCTTATATTTTCAGGTGGAAAGAACTTGAAATTGGCAAATTAGCCACGGGACATGGCTTATTGCAACTTCCTTTAGTGCCGGAGATAAAACGCCACTCACTATCCACCGTGGGATTTGAACCAGTTAAAGATATCAATTTCGAGGAGATTAGATTCAGGGATAAATCAAGAGAGAAACAAAGGAAGAAAAACCTGCAAGTAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTAAAAAACCAAAGAGAACTCCTGAAGTACCTACTGCCATGAGAAAGCAAACAGCTAAACAAAGACGTGCTAAGCAGACAGTTGAAGATGAGGAAGAGTTGACGCAAGAATACCGGTTGTTGAAGAAATTGAAGAAAGGGACCATAGATGAGGATGAATATGCCAAGTTGACAGGCACAGAGGATTTACTTTGA
Protein sequence

>Msa0746540

MDSEFPNKALTSTRFSDLKPPLSEPVLQALTDSNFDFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVIPLVEILRRNASNPKPHQVLGVIISPTRELASQIYHVAQPFISTLANVKSMLLVGGVEVKADMKKIEEEGANVLIGTPGRLHDIMNRMDILDFKSFEILILDEADRLLDMGFQKQINAIITELPKLRRTGLFSATQTQAVEELAKAGLRNPVRVEVRAETKTANDSAASKKTESSKTPSGLHIERVFAWRSYYNPYKMFHYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDYWGVVLPRLSVLKGFSLISLHGKMKQSVREKALTSFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERMCSDNAPDVIPEIRSAATKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLATGHGLLQLPLVPEIKRHSLSTVGFEPVKDINFEEIRFRDKSREKQRKKNLQVKKEAKEKEPKPKKPKRTPEVPTAMRKQTAKQRRAKQTVEDEEELTQEYRLLKKLKKGTIDEDEYAKLTGTEDLL*