AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0509730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509730 MtrunA17_Chr3g0114811 96.854 445 14 0 1 445 1 445 0.0 891
Msa0509730 MtrunA17_Chr3g0114831 85.455 385 56 0 61 445 424 808 0.0 712
Msa0509730 MtrunA17_Chr3g0114831 74.221 353 66 2 54 406 1 328 0.0 539
Msa0509730 MtrunA17_Chr1g0195061 39.594 394 222 5 63 443 4 394 1.20e-86 270
Msa0509730 MtrunA17_Chr7g0267911 28.509 456 289 13 19 443 15 464 2.81e-52 182
Msa0509730 MtrunA17_Chr8g0382671 29.039 458 289 14 12 443 19 466 3.33e-50 177
Msa0509730 MtrunA17_Chr8g0360241 24.194 372 255 9 89 440 43 407 3.90e-23 100
Msa0509730 MtrunA17_Chr2g0324801 25.414 362 245 12 96 440 22 375 8.49e-22 96.7
Msa0509730 MtrunA17_Chr4g0004131 26.108 406 253 20 63 445 6 387 1.06e-21 96.7
Msa0509730 MtrunA17_Chr6g0462441 26.645 304 182 14 138 431 131 403 7.63e-15 76.3
Msa0509730 MtrunA17_Chr6g0488041 22.956 318 215 10 148 441 121 432 1.54e-13 72.4
Msa0509730 MtrunA17_Chr3g0135251 22.043 372 245 13 98 440 69 424 1.53e-12 69.3
Msa0509730 MtrunA17_Chr2g0278911 24.739 287 187 9 114 379 103 381 2.88e-11 65.1
Msa0509730 MtrunA17_Chr4g0054371 23.467 375 240 16 99 440 71 431 4.25e-11 64.7
Msa0509730 MtrunA17_Chr6g0462501 25.926 216 141 9 167 377 63 264 4.83e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509730 AT1G77670.1 79.032 434 78 5 16 445 14 438 0.0 715
Msa0509730 AT2G22250.1 29.665 418 267 12 44 443 11 419 2.49e-54 187
Msa0509730 AT2G22250.3 29.665 418 267 12 44 443 58 466 4.49e-54 187
Msa0509730 AT2G22250.2 29.665 418 267 12 44 443 58 466 4.49e-54 187
Msa0509730 AT5G36160.1 26.133 375 244 14 89 440 45 409 7.45e-26 109
Msa0509730 AT2G20610.1 25.722 381 249 14 80 440 67 433 2.80e-25 108
Msa0509730 AT4G28410.1 23.936 376 261 10 84 440 66 435 7.53e-24 103
Msa0509730 AT2G20610.2 25.141 354 236 13 80 413 67 411 1.39e-22 100
Msa0509730 AT2G24850.1 25.882 340 229 12 117 440 85 417 1.83e-22 99.8
Msa0509730 AT4G28420.2 23.514 387 262 14 81 445 62 436 2.88e-21 96.3
Msa0509730 AT5G53970.1 23.861 373 255 11 89 440 36 400 4.10e-21 95.5
Msa0509730 AT4G28410.2 22.841 359 256 10 84 423 66 422 1.13e-20 94.4
Msa0509730 AT4G23590.1 24.793 363 228 11 105 440 58 402 5.33e-19 89.4
Msa0509730 AT1G80360.3 22.513 382 261 11 80 445 24 386 3.29e-18 86.7
Msa0509730 AT1G80360.2 22.513 382 261 11 80 445 24 386 3.29e-18 86.7
Msa0509730 AT1G80360.4 22.513 382 261 11 80 445 24 386 3.29e-18 86.7
Msa0509730 AT1G80360.1 22.513 382 261 11 80 445 24 386 3.29e-18 86.7
Msa0509730 AT4G28420.1 23.556 225 164 6 81 302 62 281 9.87e-18 85.1
Msa0509730 AT4G23600.1 25.138 362 228 13 105 440 58 402 1.03e-17 85.5
Msa0509730 AT4G23600.2 25.161 310 199 9 152 440 1 298 2.26e-16 80.1
Msa0509730 AT4G23600.3 25.076 331 210 12 105 409 58 376 3.36e-15 77.4
Msa0509730 AT3G49700.1 23.656 372 239 15 99 441 71 426 1.69e-13 72.8
Msa0509730 AT5G51690.2 23.460 341 233 13 124 441 30 365 2.34e-13 71.6
Msa0509730 AT5G51690.1 23.460 341 233 13 124 441 153 488 2.46e-13 72.4
Msa0509730 AT4G08040.1 25.159 314 209 11 149 440 111 420 1.30e-12 69.7
Msa0509730 AT2G13810.1 23.123 333 196 12 121 416 106 415 1.07e-11 67.0
Msa0509730 AT5G65800.1 23.404 282 188 10 123 380 86 363 1.75e-11 66.2

Find 157 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTACCTACATTTCAATTTC+TGG 0.052999 3_4:+58213444 None:intergenic
AGGTCACACGGCCCCGTTTC+TGG 0.204668 3_4:+58215908 None:intergenic
TATGGCAAAGAGAGCTATTT+TGG 0.213807 3_4:-58213787 Msa0509730:CDS
AGCAATGGGAGATGGGAATT+TGG 0.214772 3_4:+58215718 None:intergenic
ACTAGATTCTTTCCTTCTTC+TGG 0.222870 3_4:+58213597 None:intergenic
GCTTCATAAGAATCATAAAA+AGG 0.262851 3_4:+58214302 None:intergenic
GCAATGGGAGATGGGAATTT+GGG 0.267704 3_4:+58215719 None:intergenic
AGCCATCACAACTGAGATTC+AGG 0.276927 3_4:+58213341 None:intergenic
GAAAGGTTTAAGAAAGATAC+TGG 0.287130 3_4:-58214437 Msa0509730:CDS
GCAATTGCTGCAACTGTGTT+AGG 0.312345 3_4:-58214362 Msa0509730:CDS
GCAAGGATGAAGGAACTCTT+AGG 0.314890 3_4:-58213560 Msa0509730:CDS
AAGTCTGGACCATCAAAATT+TGG 0.315231 3_4:+58214551 None:intergenic
TGATAAGTTGGCATTTGATA+TGG 0.319352 3_4:-58214054 Msa0509730:CDS
AATCAGTATGCTAGGGGTTA+TGG 0.333698 3_4:-58214488 Msa0509730:CDS
CCCGTCCCTGATTGCTTGAA+TGG 0.339775 3_4:+58214514 None:intergenic
ATTAATAGCACCATGTTTGA+TGG 0.343864 3_4:+58214589 None:intergenic
TGACACTATCACTCCTTTGC+AGG 0.346335 3_4:-58215666 Msa0509730:intron
TCCTTGACTGGATGGAAAAT+CGG 0.347205 3_4:-58213957 Msa0509730:CDS
GCTGCTTCCTTTACAAAGTC+TGG 0.355176 3_4:+58214536 None:intergenic
TGATGGCAAGCATACTCATT+TGG 0.355864 3_4:+58214606 None:intergenic
ATGGCTGGTGCAAAAGTAAA+AGG 0.357091 3_4:-58214269 Msa0509730:CDS
TTTCTTAAACCTTTCAGAAA+TGG 0.358048 3_4:+58214445 None:intergenic
ACGGTGACAATGAACTCATT+AGG 0.363636 3_4:-58213990 Msa0509730:CDS
TGAACTAAAGAGGGACTATA+TGG 0.367867 3_4:-58213805 Msa0509730:CDS
GTTGTAGATCACACCCCTTT+TGG 0.368199 3_4:-58213705 Msa0509730:CDS
GATGGCAAGCATACTCATTT+GGG 0.373899 3_4:+58214607 None:intergenic
ACCGTCCGCTCGAACATTCC+TGG 0.379988 3_4:+58214008 None:intergenic
CCTTCCTTCCTACCAGAAAC+GGG 0.381767 3_4:-58215920 Msa0509730:five_prime_UTR
TCCTTCCTTCCTACCAGAAA+CGG 0.389033 3_4:-58215921 Msa0509730:five_prime_UTR
AGTTCAGTGTAATAAGAATC+TGG 0.396562 3_4:+58213822 None:intergenic
TGGTGCTATTAATCTTGGTC+AGG 0.399769 3_4:-58214579 Msa0509730:CDS
ATTGAAGGCCGTTGGCTTCA+AGG 0.407137 3_4:-58213757 Msa0509730:CDS
AAGCAGCCATTCAAGCAATC+AGG 0.417683 3_4:-58214520 Msa0509730:CDS
GTGGCGGCAGCAATGGGAGA+TGG 0.423928 3_4:+58215710 None:intergenic
AAACATGGTGCTATTAATCT+TGG 0.428947 3_4:-58214584 Msa0509730:CDS
AAGTCAGAAAGGAATCAAAT+TGG 0.429177 3_4:-58215873 Msa0509730:five_prime_UTR
ATTTCAATTGCTTCTTTGCC+AGG 0.432311 3_4:-58214026 Msa0509730:CDS
CGGTGACAATGAACTCATTA+GGG 0.433243 3_4:-58213989 Msa0509730:CDS
GATTTGAGGTTGCAAAAGTA+AGG 0.436033 3_4:+58213880 None:intergenic
GTGAGGGGTATTTAAAAGAA+TGG 0.436908 3_4:+58214172 None:intergenic
GACATGGTGGCGGCAGCAAT+GGG 0.438265 3_4:+58215704 None:intergenic
ATTGAAATGAATAGTAGAAA+AGG 0.440172 3_4:+58215772 None:intergenic
TTCAATGAATAATAGTTTGA+AGG 0.440260 3_4:-58213310 Msa0509730:three_prime_UTR
GGGAAGACATTCTCCTTGAC+TGG 0.450453 3_4:-58213969 Msa0509730:CDS
GGACATGGTGGCGGCAGCAA+TGG 0.451566 3_4:+58215703 None:intergenic
CACAGACTTCAACTCTTCAA+TGG 0.452484 3_4:+58214214 None:intergenic
AAGGAAATTACTGTTACGTC+TGG 0.453509 3_4:-58214395 Msa0509730:CDS
AGCCCACTGCATAGGATTTG+AGG 0.459195 3_4:+58213866 None:intergenic
GAGGAGAGAATGTGTGCAGC+AGG 0.461446 3_4:+58215823 None:intergenic
GAAATGGCAATGTTGAGGTC+TGG 0.465178 3_4:+58214461 None:intergenic
TGAAAATACAAGGCTTAAAA+CGG 0.465453 3_4:+58213260 None:intergenic
CTTATTACACTGAACTAAAG+AGG 0.466700 3_4:-58213815 Msa0509730:CDS
CAATGGGAGATGGGAATTTG+GGG 0.466975 3_4:+58215720 None:intergenic
AATACCCCTCACAATCCTAC+TGG 0.467702 3_4:-58214161 Msa0509730:CDS
TGACTGGATGGAAAATCGGC+TGG 0.469672 3_4:-58213953 Msa0509730:CDS
TTTACTTTCTGCAAGGATGA+AGG 0.471593 3_4:-58213570 Msa0509730:CDS
CTTAACATGGGGAGTGCGAC+AGG 0.474775 3_4:-58213913 Msa0509730:CDS
TTGAAATGAATAGTAGAAAA+GGG 0.478426 3_4:+58215773 None:intergenic
TGCACCAGCCATGGATAAAG+TGG 0.482819 3_4:+58214280 None:intergenic
TCAATGAATAATAGTTTGAA+GGG 0.487850 3_4:-58213309 Msa0509730:three_prime_UTR
TTTATCTTTGGTGGAGCTTG+AGG 0.487968 3_4:-58215990 Msa0509730:five_prime_UTR
TCAATGGGTAGAGCAAAATC+TGG 0.488716 3_4:+58214230 None:intergenic
GTCTAGTGGAACCTACTTTG+TGG 0.491445 3_4:-58213727 Msa0509730:CDS
CCCCTGAATCTCAGTTGTGA+TGG 0.499017 3_4:-58213343 Msa0509730:three_prime_UTR
TACTGTTACGTCTGGTTGCA+CGG 0.500814 3_4:-58214387 Msa0509730:CDS
GTTGAAGGATTGAAGGCCGT+TGG 0.502592 3_4:-58213765 Msa0509730:CDS
ACAGACTTCAACTCTTCAAT+GGG 0.503426 3_4:+58214215 None:intergenic
GCCAGGAATGTTCGAGCGGA+CGG 0.505338 3_4:-58214009 Msa0509730:CDS
CCAGAAATTGAAATGTAGGT+AGG 0.505772 3_4:-58213444 Msa0509730:three_prime_UTR
TGATGAAGTGTATGATAAGT+TGG 0.507962 3_4:-58214066 Msa0509730:CDS
AACAGCAGTGGACATGGTGG+CGG 0.511768 3_4:+58215694 None:intergenic
TTATGAAGCCACTTTATCCA+TGG 0.512377 3_4:-58214288 Msa0509730:CDS
ACGGGAATAATCAGTATGCT+AGG 0.513864 3_4:-58214496 Msa0509730:CDS
AAGGGTGACGATTTATAAGA+AGG 0.514407 3_4:+58215791 None:intergenic
TGGCGGCAGCAATGGGAGAT+GGG 0.514849 3_4:+58215711 None:intergenic
TTATATATCATGAAAATACA+AGG 0.515786 3_4:+58213250 None:intergenic
CAAAGTAGGTTCCACTAGAC+GGG 0.518051 3_4:+58213730 None:intergenic
GAAGCCACTTTATCCATGGC+TGG 0.518436 3_4:-58214284 Msa0509730:CDS
CGAATATCTAGTTAAGGAGG+TGG 0.518440 3_4:-58213658 Msa0509730:CDS
TGTTAAGTGTGGAGGTGCTA+TGG 0.525056 3_4:+58213929 None:intergenic
TAGCACCTCCACACTTAACA+TGG 0.526143 3_4:-58213926 Msa0509730:CDS
ATCTTTCCAGTAGGATTGTG+AGG 0.528488 3_4:+58214155 None:intergenic
AGACATTCTCCTTGACTGGA+TGG 0.528851 3_4:-58213965 Msa0509730:CDS
GACTGGATGGAAAATCGGCT+GGG 0.530502 3_4:-58213952 Msa0509730:CDS
GGAGAGAATGTGTGCAGCAG+GGG 0.532845 3_4:+58215825 None:intergenic
GCCATTCAAGCAATCAGGGA+CGG 0.533299 3_4:-58214515 Msa0509730:CDS
CATCCTTGCAGAAAGTAAAA+CGG 0.534086 3_4:+58213574 None:intergenic
CGCGAAGCATTAAGTCAGAA+AGG 0.535158 3_4:-58215884 Msa0509730:five_prime_UTR
ATGGGAGATGGGAATTTGGG+GGG 0.538192 3_4:+58215722 None:intergenic
CCATTCAAGCAATCAGGGAC+GGG 0.541030 3_4:-58214514 Msa0509730:CDS
GGTGCTATTAATCTTGGTCA+GGG 0.541754 3_4:-58214578 Msa0509730:CDS
GCCATCACAACTGAGATTCA+GGG 0.544523 3_4:+58213342 None:intergenic
TATTATGTTTCACTCTCCGT+CGG 0.549348 3_4:-58215944 Msa0509730:five_prime_UTR
CAAGGATGAAGGAACTCTTA+GGG 0.549677 3_4:-58213559 Msa0509730:CDS
CTCAATGCAAAGAGAAGCGA+TGG 0.550862 3_4:+58214109 None:intergenic
GTCTTCTAAACTATAAGCAT+CGG 0.555393 3_4:-58213184 Msa0509730:three_prime_UTR
GCTAGTTGTAGACCCTGAAA+AGG 0.557242 3_4:-58214414 Msa0509730:CDS
CCCGTTTCTGGTAGGAAGGA+AGG 0.559336 3_4:+58215920 None:intergenic
CTCTTAGGGCCGCTGTTGAG+AGG 0.560698 3_4:-58213545 Msa0509730:CDS
CGGGAATAATCAGTATGCTA+GGG 0.561122 3_4:-58214495 Msa0509730:CDS
CGGCCCCGTTTCTGGTAGGA+AGG 0.563104 3_4:+58215916 None:intergenic
TTATTACACTGAACTAAAGA+GGG 0.567688 3_4:-58213814 Msa0509730:CDS
ACTGCAGCAGCCCACTGCAT+AGG 0.569164 3_4:+58213858 None:intergenic
ACAAAGTAGGTTCCACTAGA+CGG 0.569906 3_4:+58213729 None:intergenic
GTGTTAGGATTGATAAATCC+CGG 0.569928 3_4:-58214347 Msa0509730:CDS
TGATGGTCCAGACTTTGTAA+AGG 0.572265 3_4:-58214543 Msa0509730:CDS
TCAACATTGCCATTTCTGAA+AGG 0.572406 3_4:-58214454 Msa0509730:CDS
TAAATAGGATGAACCTGCAA+AGG 0.572640 3_4:+58215653 None:intergenic
AAACACGATAACCTCATCAC+CGG 0.572871 3_4:+58214328 None:intergenic
AGCAGCCATTCAAGCAATCA+GGG 0.573003 3_4:-58214519 Msa0509730:CDS
CGCACTCCCCATGTTAAGTG+TGG 0.576137 3_4:+58213918 None:intergenic
CGAGTGAACATCTTTCCAGT+AGG 0.577547 3_4:+58214146 None:intergenic
AGTTAAGGAGGTGGGAGTAG+TGG 0.579382 3_4:-58213649 Msa0509730:CDS
GTGATCTACAACCACAAAGT+AGG 0.583391 3_4:+58213716 None:intergenic
AGGAGAGAATGTGTGCAGCA+GGG 0.589039 3_4:+58215824 None:intergenic
TATAAGAAGGAATGAATCTG+AGG 0.591102 3_4:+58215804 None:intergenic
TTCAAGGTATTCCCGTCTAG+TGG 0.593396 3_4:-58213741 Msa0509730:CDS
TCTTTCCAGTAGGATTGTGA+GGG 0.595542 3_4:+58214156 None:intergenic
TTTCAGAAATGGCAATGTTG+AGG 0.596285 3_4:+58214456 None:intergenic
AGCACCTCCACACTTAACAT+GGG 0.605376 3_4:-58213925 Msa0509730:CDS
AACCTCAAATCCTATGCAGT+GGG 0.606106 3_4:-58213868 Msa0509730:CDS
AATGGGAGATGGGAATTTGG+GGG 0.609642 3_4:+58215721 None:intergenic
TTGCGAATATCTAGTTAAGG+AGG 0.612658 3_4:-58213661 Msa0509730:CDS
TTCAAGTAAAACACACTGGT+AGG 0.614437 3_4:+58213621 None:intergenic
CAAAGGAGTGATAGTGTCAG+TGG 0.615806 3_4:+58215670 None:intergenic
ACTCCCCATGTTAAGTGTGG+AGG 0.616008 3_4:+58213921 None:intergenic
CAATGAATAATAGTTTGAAG+GGG 0.616083 3_4:-58213308 Msa0509730:three_prime_UTR
GGCCGCTGTTGAGAGGATGA+AGG 0.616475 3_4:-58213538 Msa0509730:CDS
CAACCTCAAATCCTATGCAG+TGG 0.616824 3_4:-58213869 Msa0509730:CDS
ATTGATAAATCCCGGTGATG+AGG 0.617618 3_4:-58214339 Msa0509730:CDS
CGGGAATACCTTGAAGCCAA+CGG 0.620217 3_4:+58213749 None:intergenic
TGGAAAGATGTTCACTCGAG+AGG 0.626679 3_4:-58214141 Msa0509730:CDS
AATGCTTCGCGAAGGTCACA+CGG 0.631960 3_4:+58215896 None:intergenic
AACACGATAACCTCATCACC+GGG 0.634794 3_4:+58214329 None:intergenic
AGTGGAAACAGCAGTGGACA+TGG 0.636832 3_4:+58215688 None:intergenic
TGGTAGGAAGGAAGGACCGA+CGG 0.641546 3_4:+58215928 None:intergenic
CTTTGCCAGGAATGTTCGAG+CGG 0.643712 3_4:-58214013 Msa0509730:CDS
ATGGGTAGAGCAAAATCTGG+AGG 0.644262 3_4:+58214233 None:intergenic
CCATCACAACTGAGATTCAG+GGG 0.644925 3_4:+58213343 None:intergenic
GGGAATAATCAGTATGCTAG+GGG 0.645649 3_4:-58214494 Msa0509730:CDS
AGTATGCTTGCCATCAAACA+TGG 0.649600 3_4:-58214599 Msa0509730:CDS
TTCAATCAACATATAGCACA+CGG 0.659301 3_4:+58213480 None:intergenic
AGTGTCAGTGGAAACAGCAG+TGG 0.660095 3_4:+58215682 None:intergenic
TGGATTCAAGTAAAACACAC+TGG 0.663871 3_4:+58213617 None:intergenic
TGGGTAGAGCAAAATCTGGA+GGG 0.667591 3_4:+58214234 None:intergenic
AAAGGTTTAAGAAAGATACT+GGG 0.669115 3_4:-58214436 Msa0509730:CDS
CACACGGCCCCGTTTCTGGT+AGG 0.671507 3_4:+58215912 None:intergenic
TCTGACTTAATGCTTCGCGA+AGG 0.672744 3_4:+58215888 None:intergenic
GCACCTCCACACTTAACATG+GGG 0.680545 3_4:-58213924 Msa0509730:CDS
CTTCCTTCCTACCAGAAACG+GGG 0.681004 3_4:-58215919 Msa0509730:five_prime_UTR
GAATATCTAGTTAAGGAGGT+GGG 0.681051 3_4:-58213657 Msa0509730:CDS
CTCCTTCATCCTCTCAACAG+CGG 0.683424 3_4:+58213536 None:intergenic
CTTTCCAGTAGGATTGTGAG+GGG 0.686125 3_4:+58214157 None:intergenic
CATCACAACTGAGATTCAGG+GGG 0.722640 3_4:+58213344 None:intergenic
GGAAACAGCAGTGGACATGG+TGG 0.727016 3_4:+58215691 None:intergenic
TTGTTTGTTAGGTTGCAAAG+CGG 0.733177 3_4:-58214658 Msa0509730:intron
GGGTTTATAGGAGAATGAGG+AGG 0.748780 3_4:+58215742 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAAGAAAAAAAAAAAATA+AGG + chr3_4:58214038-58214057 None:intergenic 10.0%
!!! ATTTTTCATTAATTCATTTC+TGG - chr3_4:58213541-58213560 Msa0509730:CDS 15.0%
!!! TTTTTCATTAATTCATTTCT+GGG - chr3_4:58213542-58213561 Msa0509730:CDS 15.0%
!!! TTATTTTAATCAATGATAAC+AGG + chr3_4:58214421-58214440 None:intergenic 15.0%
!! AAATTATAAACATAAACACA+TGG + chr3_4:58214469-58214488 None:intergenic 15.0%
!! TTATATATCATGAAAATACA+AGG + chr3_4:58215914-58215933 None:intergenic 15.0%
!! TTGAAATGAATAGTAGAAAA+GGG + chr3_4:58213391-58213410 None:intergenic 20.0%
!! ATTGAAATGAATAGTAGAAA+AGG + chr3_4:58213392-58213411 None:intergenic 20.0%
!!! TTTTCATTAATTCATTTCTG+GGG - chr3_4:58213543-58213562 Msa0509730:CDS 20.0%
!! TTGAGAATATTCATATTTAC+TGG - chr3_4:58213639-58213658 Msa0509730:CDS 20.0%
!! AAAATACAAAACCCTAATTT+AGG - chr3_4:58213733-58213752 Msa0509730:CDS 20.0%
!! AAATACAAAACCCTAATTTA+GGG - chr3_4:58213734-58213753 Msa0509730:CDS 20.0%
!! GTTAACATCAAATATATGTT+CGG - chr3_4:58213764-58213783 Msa0509730:CDS 20.0%
!! CATTGAATAATTGATGTATT+TGG + chr3_4:58214179-58214198 None:intergenic 20.0%
!!! TAAGCAAAAAGTCAATTTTT+AGG + chr3_4:58214204-58214223 None:intergenic 20.0%
!!! ATTAAGTTGTTTAACCAAAT+AGG - chr3_4:58214259-58214278 Msa0509730:CDS 20.0%
!!! TTAAGTTGTTTAACCAAATA+GGG - chr3_4:58214260-58214279 Msa0509730:CDS 20.0%
!! TAGTATCATCATATAAACTT+AGG + chr3_4:58214286-58214305 None:intergenic 20.0%
!!! TTTTTTTTTGGAAGGAAATT+TGG - chr3_4:58214383-58214402 Msa0509730:CDS 20.0%
!! AATAAGTGAAGAAAAAGATA+AGG - chr3_4:58214436-58214455 Msa0509730:CDS 20.0%
!!! TTTGCTTTAATTTGTTTGTT+AGG - chr3_4:58214492-58214511 Msa0509730:CDS 20.0%
!! TTCATAAGAATCATAAAAAG+GGG + chr3_4:58214860-58214879 None:intergenic 20.0%
!! CTTCATAAGAATCATAAAAA+GGG + chr3_4:58214861-58214880 None:intergenic 20.0%
!! TTCAATGAATAATAGTTTGA+AGG - chr3_4:58215851-58215870 Msa0509730:exon 20.0%
!! TCAATGAATAATAGTTTGAA+GGG - chr3_4:58215852-58215871 Msa0509730:exon 20.0%
!! TTTCATTAATTCATTTCTGG+GGG - chr3_4:58213544-58213563 Msa0509730:CDS 25.0%
! ATTCATATTTACTGGTAGAA+AGG - chr3_4:58213647-58213666 Msa0509730:CDS 25.0%
! TTCATATTTACTGGTAGAAA+GGG - chr3_4:58213648-58213667 Msa0509730:CDS 25.0%
! AACAAATAGACCCTAAATTA+GGG + chr3_4:58213747-58213766 None:intergenic 25.0%
! TAACAAATAGACCCTAAATT+AGG + chr3_4:58213748-58213767 None:intergenic 25.0%
! TAAACAAAATCATTGTGCAT+TGG - chr3_4:58213814-58213833 Msa0509730:CDS 25.0%
! AAACAAAATCATTGTGCATT+GGG - chr3_4:58213815-58213834 Msa0509730:CDS 25.0%
! ATAAGTTATTCCATAGAGTT+AGG + chr3_4:58213981-58214000 None:intergenic 25.0%
! TTATGAACTATAATAGTGAC+CGG - chr3_4:58214221-58214240 Msa0509730:CDS 25.0%
! TTTCTTAAACCTTTCAGAAA+TGG + chr3_4:58214719-58214738 None:intergenic 25.0%
! AAAGGTTTAAGAAAGATACT+GGG - chr3_4:58214725-58214744 Msa0509730:intron 25.0%
!! TAACAGTAATTTCCTTTTCA+GGG + chr3_4:58214762-58214781 None:intergenic 25.0%
! GCTTCATAAGAATCATAAAA+AGG + chr3_4:58214862-58214881 None:intergenic 25.0%
! TTATTACACTGAACTAAAGA+GGG - chr3_4:58215347-58215366 Msa0509730:intron 25.0%
!! TATCATTTTCATGTCCAAAA+GGG + chr3_4:58215473-58215492 None:intergenic 25.0%
!! ATATCATTTTCATGTCCAAA+AGG + chr3_4:58215474-58215493 None:intergenic 25.0%
!! ATTTTGCGAATATCTAGTTA+AGG - chr3_4:58215497-58215516 Msa0509730:intron 25.0%
!! TTTTCCAGAAATTGAAATGT+AGG - chr3_4:58215713-58215732 Msa0509730:CDS 25.0%
! CAATGAATAATAGTTTGAAG+GGG - chr3_4:58215853-58215872 Msa0509730:exon 25.0%
! TGAAAATACAAGGCTTAAAA+CGG + chr3_4:58215904-58215923 None:intergenic 25.0%
!!! ACCATTTTTCACATGAATTT+GGG + chr3_4:58215959-58215978 None:intergenic 25.0%
AAGTCAGAAAGGAATCAAAT+TGG - chr3_4:58213288-58213307 Msa0509730:three_prime_UTR 30.0%
TATAAGAAGGAATGAATCTG+AGG + chr3_4:58213360-58213379 None:intergenic 30.0%
CAAATATATGTTCGGATTGA+TGG - chr3_4:58213772-58213791 Msa0509730:CDS 30.0%
!! ATTGATGGTGGGTATTTATT+TGG - chr3_4:58213787-58213806 Msa0509730:CDS 30.0%
CAATATGTGTTTCAGAATCT+TGG + chr3_4:58213856-58213875 None:intergenic 30.0%
CATTGAATAATTGATGTACC+TGG - chr3_4:58214141-58214160 Msa0509730:CDS 30.0%
ATTTGGCTATATTATAGACC+AGG + chr3_4:58214162-58214181 None:intergenic 30.0%
ATATAAACTTAGGCCCTATT+TGG + chr3_4:58214276-58214295 None:intergenic 30.0%
ATTAATAGCACCATGTTTGA+TGG + chr3_4:58214575-58214594 None:intergenic 30.0%
!! AAACATGGTGCTATTAATCT+TGG - chr3_4:58214577-58214596 Msa0509730:CDS 30.0%
GAAAGGTTTAAGAAAGATAC+TGG - chr3_4:58214724-58214743 Msa0509730:intron 30.0%
! GTAACAGTAATTTCCTTTTC+AGG + chr3_4:58214763-58214782 None:intergenic 30.0%
TGATGAAGTGTATGATAAGT+TGG - chr3_4:58215095-58215114 Msa0509730:intron 30.0%
! TGATAAGTTGGCATTTGATA+TGG - chr3_4:58215107-58215126 Msa0509730:intron 30.0%
AGTTCAGTGTAATAAGAATC+TGG + chr3_4:58215342-58215361 None:intergenic 30.0%
CTTATTACACTGAACTAAAG+AGG - chr3_4:58215346-58215365 Msa0509730:intron 30.0%
!!! TATTTTGGTTGAAGGATTGA+AGG - chr3_4:58215389-58215408 Msa0509730:intron 30.0%
! ATCATTTTCATGTCCAAAAG+GGG + chr3_4:58215472-58215491 None:intergenic 30.0%
! TTTTACTTGAATCCAGAAGA+AGG - chr3_4:58215552-58215571 Msa0509730:intron 30.0%
TTCAATCAACATATAGCACA+CGG + chr3_4:58215684-58215703 None:intergenic 30.0%
TCCCAAATTCATGTGAAAAA+TGG - chr3_4:58215955-58215974 Msa0509730:five_prime_UTR 30.0%
!! GACCATTTTTCACATGAATT+TGG + chr3_4:58215960-58215979 None:intergenic 30.0%
GTCTTCTAAACTATAAGCAT+CGG - chr3_4:58215977-58215996 Msa0509730:five_prime_UTR 30.0%
TATTATGTTTCACTCTCCGT+CGG - chr3_4:58213217-58213236 Msa0509730:three_prime_UTR 35.0%
AAGGGTGACGATTTATAAGA+AGG + chr3_4:58213373-58213392 None:intergenic 35.0%
TAAATAGGATGAACCTGCAA+AGG + chr3_4:58213511-58213530 None:intergenic 35.0%
TAGAAAGGGTTTGTGGAAAA+GGG - chr3_4:58213662-58213681 Msa0509730:CDS 35.0%
GAAGGAAAGGAATGAGAAAA+GGG - chr3_4:58213684-58213703 Msa0509730:CDS 35.0%
AAGGAAAGGAATGAGAAAAG+GGG - chr3_4:58213685-58213704 Msa0509730:CDS 35.0%
AGAAAAGGGGATAGATTTCT+AGG - chr3_4:58213698-58213717 Msa0509730:CDS 35.0%
ATATATGTTCGGATTGATGG+TGG - chr3_4:58213775-58213794 Msa0509730:CDS 35.0%
! TATATGTTCGGATTGATGGT+GGG - chr3_4:58213776-58213795 Msa0509730:CDS 35.0%
CAGCTTATTTCCTAACTCTA+TGG - chr3_4:58213968-58213987 Msa0509730:CDS 35.0%
TAATTAAGTGCTTACTCCTC+CGG + chr3_4:58214243-58214262 None:intergenic 35.0%
ACCAGAGATAATATATCGTC+TGG - chr3_4:58214345-58214364 Msa0509730:CDS 35.0%
ACCAGACGATATATTATCTC+TGG + chr3_4:58214349-58214368 None:intergenic 35.0%
!!! AAGCAGGAGGGTTTTTTTTT+TGG - chr3_4:58214371-58214390 Msa0509730:CDS 35.0%
!!! AGGAGGGTTTTTTTTTTGGA+AGG - chr3_4:58214375-58214394 Msa0509730:CDS 35.0%
! TTGTTTGTTAGGTTGCAAAG+CGG - chr3_4:58214503-58214522 Msa0509730:CDS 35.0%
! CAGGGTTTTCCAAATTTTGA+TGG - chr3_4:58214601-58214620 Msa0509730:CDS 35.0%
AAGTCTGGACCATCAAAATT+TGG + chr3_4:58214613-58214632 None:intergenic 35.0%
TTTCAGAAATGGCAATGTTG+AGG + chr3_4:58214708-58214727 None:intergenic 35.0%
! TCAACATTGCCATTTCTGAA+AGG - chr3_4:58214707-58214726 Msa0509730:intron 35.0%
AAGGAAATTACTGTTACGTC+TGG - chr3_4:58214766-58214785 Msa0509730:intron 35.0%
GTGTTAGGATTGATAAATCC+CGG - chr3_4:58214814-58214833 Msa0509730:intron 35.0%
! TTATGAAGCCACTTTATCCA+TGG - chr3_4:58214873-58214892 Msa0509730:intron 35.0%
ACAGACTTCAACTCTTCAAT+GGG + chr3_4:58214949-58214968 None:intergenic 35.0%
!! GTGAGGGGTATTTAAAAGAA+TGG + chr3_4:58214992-58215011 None:intergenic 35.0%
ATTTCAATTGCTTCTTTGCC+AGG - chr3_4:58215135-58215154 Msa0509730:intron 35.0%
! GATTTGAGGTTGCAAAAGTA+AGG + chr3_4:58215284-58215303 None:intergenic 35.0%
TGAACTAAAGAGGGACTATA+TGG - chr3_4:58215356-58215375 Msa0509730:intron 35.0%
! TATGGCAAAGAGAGCTATTT+TGG - chr3_4:58215374-58215393 Msa0509730:intron 35.0%
!!! AAGAGAGCTATTTTGGTTGA+AGG - chr3_4:58215381-58215400 Msa0509730:intron 35.0%
TTGCGAATATCTAGTTAAGG+AGG - chr3_4:58215500-58215519 Msa0509730:intron 35.0%
GAATATCTAGTTAAGGAGGT+GGG - chr3_4:58215504-58215523 Msa0509730:intron 35.0%
TTCAAGTAAAACACACTGGT+AGG + chr3_4:58215543-58215562 None:intergenic 35.0%
TGGATTCAAGTAAAACACAC+TGG + chr3_4:58215547-58215566 None:intergenic 35.0%
ACTAGATTCTTTCCTTCTTC+TGG + chr3_4:58215567-58215586 None:intergenic 35.0%
CATCCTTGCAGAAAGTAAAA+CGG + chr3_4:58215590-58215609 None:intergenic 35.0%
TTTACTTTCTGCAAGGATGA+AGG - chr3_4:58215591-58215610 Msa0509730:intron 35.0%
CCTACCTACATTTCAATTTC+TGG + chr3_4:58215720-58215739 None:intergenic 35.0%
CCAGAAATTGAAATGTAGGT+AGG - chr3_4:58215717-58215736 Msa0509730:CDS 35.0%
TTTATCTTTGGTGGAGCTTG+AGG - chr3_4:58213171-58213190 Msa0509730:three_prime_UTR 40.0%
TTACTGGTAGAAAGGGTTTG+TGG - chr3_4:58213655-58213674 Msa0509730:CDS 40.0%
GTAGAAAGGGTTTGTGGAAA+AGG - chr3_4:58213661-58213680 Msa0509730:CDS 40.0%
TTTGTGGAAAAGGGAAGGAA+AGG - chr3_4:58213671-58213690 Msa0509730:CDS 40.0%
GGAAGGAAAGGAATGAGAAA+AGG - chr3_4:58213683-58213702 Msa0509730:CDS 40.0%
TGAACTATAATAGTGACCGG+AGG - chr3_4:58214224-58214243 Msa0509730:CDS 40.0%
ATATATCGTCTGGTAGAAGC+AGG - chr3_4:58214355-58214374 Msa0509730:CDS 40.0%
GATGGCAAGCATACTCATTT+GGG + chr3_4:58214557-58214576 None:intergenic 40.0%
TGATGGCAAGCATACTCATT+TGG + chr3_4:58214558-58214577 None:intergenic 40.0%
AGTATGCTTGCCATCAAACA+TGG - chr3_4:58214562-58214581 Msa0509730:CDS 40.0%
!! TGGTGCTATTAATCTTGGTC+AGG - chr3_4:58214582-58214601 Msa0509730:CDS 40.0%
!! GGTGCTATTAATCTTGGTCA+GGG - chr3_4:58214583-58214602 Msa0509730:CDS 40.0%
TGATGGTCCAGACTTTGTAA+AGG - chr3_4:58214618-58214637 Msa0509730:CDS 40.0%
ACGGGAATAATCAGTATGCT+AGG - chr3_4:58214665-58214684 Msa0509730:intron 40.0%
CGGGAATAATCAGTATGCTA+GGG - chr3_4:58214666-58214685 Msa0509730:intron 40.0%
GGGAATAATCAGTATGCTAG+GGG - chr3_4:58214667-58214686 Msa0509730:intron 40.0%
AATCAGTATGCTAGGGGTTA+TGG - chr3_4:58214673-58214692 Msa0509730:intron 40.0%
ATTGATAAATCCCGGTGATG+AGG - chr3_4:58214822-58214841 Msa0509730:intron 40.0%
AAACACGATAACCTCATCAC+CGG + chr3_4:58214836-58214855 None:intergenic 40.0%
!! TTTTACTTTTGCACCAGCCA+TGG + chr3_4:58214893-58214912 None:intergenic 40.0%
ATGGCTGGTGCAAAAGTAAA+AGG - chr3_4:58214892-58214911 Msa0509730:intron 40.0%
TCAATGGGTAGAGCAAAATC+TGG + chr3_4:58214934-58214953 None:intergenic 40.0%
CACAGACTTCAACTCTTCAA+TGG + chr3_4:58214950-58214969 None:intergenic 40.0%
TCTTTCCAGTAGGATTGTGA+GGG + chr3_4:58215008-58215027 None:intergenic 40.0%
ATCTTTCCAGTAGGATTGTG+AGG + chr3_4:58215009-58215028 None:intergenic 40.0%
ACGGTGACAATGAACTCATT+AGG - chr3_4:58215171-58215190 Msa0509730:intron 40.0%
CGGTGACAATGAACTCATTA+GGG - chr3_4:58215172-58215191 Msa0509730:intron 40.0%
TCCTTGACTGGATGGAAAAT+CGG - chr3_4:58215204-58215223 Msa0509730:intron 40.0%
AACCTCAAATCCTATGCAGT+GGG - chr3_4:58215293-58215312 Msa0509730:intron 40.0%
ACAAAGTAGGTTCCACTAGA+CGG + chr3_4:58215435-58215454 None:intergenic 40.0%
GTGATCTACAACCACAAAGT+AGG + chr3_4:58215448-58215467 None:intergenic 40.0%
CGAATATCTAGTTAAGGAGG+TGG - chr3_4:58215503-58215522 Msa0509730:intron 40.0%
! AGTCCGTTTTACTTTCTGCA+AGG - chr3_4:58215584-58215603 Msa0509730:intron 40.0%
CAAGGATGAAGGAACTCTTA+GGG - chr3_4:58215602-58215621 Msa0509730:intron 40.0%
GGAAAAATCACAATCTAGGC+AGG + chr3_4:58215799-58215818 None:intergenic 40.0%
AGGGGGAAAAATCACAATCT+AGG + chr3_4:58215803-58215822 None:intergenic 40.0%
TCCTTCCTTCCTACCAGAAA+CGG - chr3_4:58213240-58213259 Msa0509730:three_prime_UTR 45.0%
TCTGACTTAATGCTTCGCGA+AGG + chr3_4:58213276-58213295 None:intergenic 45.0%
! CGCGAAGCATTAAGTCAGAA+AGG - chr3_4:58213277-58213296 Msa0509730:three_prime_UTR 45.0%
GGGTTTATAGGAGAATGAGG+AGG + chr3_4:58213422-58213441 None:intergenic 45.0%
TGGGAATTTGGGGGGTTTAT+AGG + chr3_4:58213434-58213453 None:intergenic 45.0%
AATGGGAGATGGGAATTTGG+GGG + chr3_4:58213443-58213462 None:intergenic 45.0%
CAATGGGAGATGGGAATTTG+GGG + chr3_4:58213444-58213463 None:intergenic 45.0%
GCAATGGGAGATGGGAATTT+GGG + chr3_4:58213445-58213464 None:intergenic 45.0%
AGCAATGGGAGATGGGAATT+TGG + chr3_4:58213446-58213465 None:intergenic 45.0%
! CAAAGGAGTGATAGTGTCAG+TGG + chr3_4:58213494-58213513 None:intergenic 45.0%
TGACACTATCACTCCTTTGC+AGG - chr3_4:58213495-58213514 Msa0509730:three_prime_UTR 45.0%
AAGGGTTTGTGGAAAAGGGA+AGG - chr3_4:58213666-58213685 Msa0509730:CDS 45.0%
TCTCTGGTCCTTACACCAAT+CGG + chr3_4:58214333-58214352 None:intergenic 45.0%
GCTGCTTCCTTTACAAAGTC+TGG + chr3_4:58214628-58214647 None:intergenic 45.0%
AAGCAGCCATTCAAGCAATC+AGG - chr3_4:58214641-58214660 Msa0509730:CDS 45.0%
AGCAGCCATTCAAGCAATCA+GGG - chr3_4:58214642-58214661 Msa0509730:CDS 45.0%
GAAATGGCAATGTTGAGGTC+TGG + chr3_4:58214703-58214722 None:intergenic 45.0%
GCTAGTTGTAGACCCTGAAA+AGG - chr3_4:58214747-58214766 Msa0509730:intron 45.0%
TACTGTTACGTCTGGTTGCA+CGG - chr3_4:58214774-58214793 Msa0509730:intron 45.0%
GCAATTGCTGCAACTGTGTT+AGG - chr3_4:58214799-58214818 Msa0509730:intron 45.0%
AACACGATAACCTCATCACC+GGG + chr3_4:58214835-58214854 None:intergenic 45.0%
TGGGTAGAGCAAAATCTGGA+GGG + chr3_4:58214930-58214949 None:intergenic 45.0%
ATGGGTAGAGCAAAATCTGG+AGG + chr3_4:58214931-58214950 None:intergenic 45.0%
AATACCCCTCACAATCCTAC+TGG - chr3_4:58215000-58215019 Msa0509730:intron 45.0%
CTTTCCAGTAGGATTGTGAG+GGG + chr3_4:58215007-58215026 None:intergenic 45.0%
CGAGTGAACATCTTTCCAGT+AGG + chr3_4:58215018-58215037 None:intergenic 45.0%
TGGAAAGATGTTCACTCGAG+AGG - chr3_4:58215020-58215039 Msa0509730:intron 45.0%
CTCAATGCAAAGAGAAGCGA+TGG + chr3_4:58215055-58215074 None:intergenic 45.0%
AGACATTCTCCTTGACTGGA+TGG - chr3_4:58215196-58215215 Msa0509730:intron 45.0%
!! TGTTAAGTGTGGAGGTGCTA+TGG + chr3_4:58215235-58215254 None:intergenic 45.0%
TAGCACCTCCACACTTAACA+TGG - chr3_4:58215235-58215254 Msa0509730:intron 45.0%
AGCACCTCCACACTTAACAT+GGG - chr3_4:58215236-58215255 Msa0509730:intron 45.0%
CAACCTCAAATCCTATGCAG+TGG - chr3_4:58215292-58215311 Msa0509730:intron 45.0%
! TTCAAGGTATTCCCGTCTAG+TGG - chr3_4:58215420-58215439 Msa0509730:intron 45.0%
CAAAGTAGGTTCCACTAGAC+GGG + chr3_4:58215434-58215453 None:intergenic 45.0%
GTCTAGTGGAACCTACTTTG+TGG - chr3_4:58215434-58215453 Msa0509730:intron 45.0%
! GTTGTAGATCACACCCCTTT+TGG - chr3_4:58215456-58215475 Msa0509730:intron 45.0%
GCAAGGATGAAGGAACTCTT+AGG - chr3_4:58215601-58215620 Msa0509730:intron 45.0%
CATCACAACTGAGATTCAGG+GGG + chr3_4:58215820-58215839 None:intergenic 45.0%
CCATCACAACTGAGATTCAG+GGG + chr3_4:58215821-58215840 None:intergenic 45.0%
GCCATCACAACTGAGATTCA+GGG + chr3_4:58215822-58215841 None:intergenic 45.0%
AGCCATCACAACTGAGATTC+AGG + chr3_4:58215823-58215842 None:intergenic 45.0%
!! AAAATAAACAATTAATAAAT+AGG + chr3_4:58213526-58213545 None:intergenic 5.0%
CCTTCCTTCCTACCAGAAAC+GGG - chr3_4:58213241-58213260 Msa0509730:three_prime_UTR 50.0%
CTTCCTTCCTACCAGAAACG+GGG - chr3_4:58213242-58213261 Msa0509730:three_prime_UTR 50.0%
AATGCTTCGCGAAGGTCACA+CGG + chr3_4:58213268-58213287 None:intergenic 50.0%
AGGAGAGAATGTGTGCAGCA+GGG + chr3_4:58213340-58213359 None:intergenic 50.0%
GGGGGGTTTATAGGAGAATG+AGG + chr3_4:58213425-58213444 None:intergenic 50.0%
ATGGGAGATGGGAATTTGGG+GGG + chr3_4:58213442-58213461 None:intergenic 50.0%
AGTGGAAACAGCAGTGGACA+TGG + chr3_4:58213476-58213495 None:intergenic 50.0%
AGTGTCAGTGGAAACAGCAG+TGG + chr3_4:58213482-58213501 None:intergenic 50.0%
!!! CCAATCGGGACGGTTTTGAA+AGG + chr3_4:58214318-58214337 None:intergenic 50.0%
CCTTTCAAAACCGTCCCGAT+TGG - chr3_4:58214315-58214334 Msa0509730:CDS 50.0%
AAACCGTCCCGATTGGTGTA+AGG - chr3_4:58214322-58214341 Msa0509730:CDS 50.0%
CTCTGGTCCTTACACCAATC+GGG + chr3_4:58214332-58214351 None:intergenic 50.0%
TATCGTCTGGTAGAAGCAGG+AGG - chr3_4:58214358-58214377 Msa0509730:CDS 50.0%
ATCGTCTGGTAGAAGCAGGA+GGG - chr3_4:58214359-58214378 Msa0509730:CDS 50.0%
GCCATTCAAGCAATCAGGGA+CGG - chr3_4:58214646-58214665 Msa0509730:CDS 50.0%
CCATTCAAGCAATCAGGGAC+GGG - chr3_4:58214647-58214666 Msa0509730:CDS 50.0%
! GAAGCCACTTTATCCATGGC+TGG - chr3_4:58214877-58214896 Msa0509730:intron 50.0%
TGCACCAGCCATGGATAAAG+TGG + chr3_4:58214884-58214903 None:intergenic 50.0%
CTTTGCCAGGAATGTTCGAG+CGG - chr3_4:58215148-58215167 Msa0509730:intron 50.0%
GGGAAGACATTCTCCTTGAC+TGG - chr3_4:58215192-58215211 Msa0509730:intron 50.0%
!! GCCGATTTTCCATCCAGTCA+AGG + chr3_4:58215208-58215227 None:intergenic 50.0%
TGACTGGATGGAAAATCGGC+TGG - chr3_4:58215208-58215227 Msa0509730:intron 50.0%
GACTGGATGGAAAATCGGCT+GGG - chr3_4:58215209-58215228 Msa0509730:intron 50.0%
GCACCTCCACACTTAACATG+GGG - chr3_4:58215237-58215256 Msa0509730:intron 50.0%
ACTCCCCATGTTAAGTGTGG+AGG + chr3_4:58215243-58215262 None:intergenic 50.0%
AGCCCACTGCATAGGATTTG+AGG + chr3_4:58215298-58215317 None:intergenic 50.0%
GTTGAAGGATTGAAGGCCGT+TGG - chr3_4:58215396-58215415 Msa0509730:intron 50.0%
!! ATTGAAGGCCGTTGGCTTCA+AGG - chr3_4:58215404-58215423 Msa0509730:intron 50.0%
CGGGAATACCTTGAAGCCAA+CGG + chr3_4:58215415-58215434 None:intergenic 50.0%
AGTTAAGGAGGTGGGAGTAG+TGG - chr3_4:58215512-58215531 Msa0509730:intron 50.0%
CTCCTTCATCCTCTCAACAG+CGG + chr3_4:58215628-58215647 None:intergenic 50.0%
CCCCTGAATCTCAGTTGTGA+TGG - chr3_4:58215818-58215837 Msa0509730:CDS 50.0%
TGGTAGGAAGGAAGGACCGA+CGG + chr3_4:58213236-58213255 None:intergenic 55.0%
!! CCCGTTTCTGGTAGGAAGGA+AGG + chr3_4:58213244-58213263 None:intergenic 55.0%
GGAGAGAATGTGTGCAGCAG+GGG + chr3_4:58213339-58213358 None:intergenic 55.0%
GAGGAGAGAATGTGTGCAGC+AGG + chr3_4:58213341-58213360 None:intergenic 55.0%
AACAGCAGTGGACATGGTGG+CGG + chr3_4:58213470-58213489 None:intergenic 55.0%
GGAAACAGCAGTGGACATGG+TGG + chr3_4:58213473-58213492 None:intergenic 55.0%
GGTCCTTACACCAATCGGGA+CGG + chr3_4:58214328-58214347 None:intergenic 55.0%
CCCGTCCCTGATTGCTTGAA+TGG + chr3_4:58214650-58214669 None:intergenic 55.0%
CGCACTCCCCATGTTAAGTG+TGG + chr3_4:58215246-58215265 None:intergenic 55.0%
! CTTAACATGGGGAGTGCGAC+AGG - chr3_4:58215248-58215267 Msa0509730:intron 55.0%
TGGCGGCAGCAATGGGAGAT+GGG + chr3_4:58213453-58213472 None:intergenic 60.0%
!! GACATGGTGGCGGCAGCAAT+GGG + chr3_4:58213460-58213479 None:intergenic 60.0%
GCCAGGAATGTTCGAGCGGA+CGG - chr3_4:58215152-58215171 Msa0509730:intron 60.0%
ACCGTCCGCTCGAACATTCC+TGG + chr3_4:58215156-58215175 None:intergenic 60.0%
ACTGCAGCAGCCCACTGCAT+AGG + chr3_4:58215306-58215325 None:intergenic 60.0%
CTCTTAGGGCCGCTGTTGAG+AGG - chr3_4:58215616-58215635 Msa0509730:intron 60.0%
GGCCGCTGTTGAGAGGATGA+AGG - chr3_4:58215623-58215642 Msa0509730:intron 60.0%
!! CGGCCCCGTTTCTGGTAGGA+AGG + chr3_4:58213248-58213267 None:intergenic 65.0%
!! CACACGGCCCCGTTTCTGGT+AGG + chr3_4:58213252-58213271 None:intergenic 65.0%
AGGTCACACGGCCCCGTTTC+TGG + chr3_4:58213256-58213275 None:intergenic 65.0%
GTGGCGGCAGCAATGGGAGA+TGG + chr3_4:58213454-58213473 None:intergenic 65.0%
!! GGACATGGTGGCGGCAGCAA+TGG + chr3_4:58213461-58213480 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 58213165 58216018 58213165 ID=Msa0509730;Name=Msa0509730
chr3_4 mRNA 58213165 58216018 58213165 ID=Msa0509730-mRNA-1;Parent=Msa0509730;Name=Msa0509730-mRNA-1;_AED=0.23;_eAED=0.23;_QI=163|1|1|1|1|1|2|356|445
chr3_4 exon 58213165 58214669 58213165 ID=Msa0509730-mRNA-1:exon:13503;Parent=Msa0509730-mRNA-1
chr3_4 exon 58215667 58216018 58215667 ID=Msa0509730-mRNA-1:exon:13502;Parent=Msa0509730-mRNA-1
chr3_4 five_prime_UTR 58215856 58216018 58215856 ID=Msa0509730-mRNA-1:five_prime_utr;Parent=Msa0509730-mRNA-1
chr3_4 CDS 58215667 58215855 58215667 ID=Msa0509730-mRNA-1:cds;Parent=Msa0509730-mRNA-1
chr3_4 CDS 58213521 58214669 58213521 ID=Msa0509730-mRNA-1:cds;Parent=Msa0509730-mRNA-1
chr3_4 three_prime_UTR 58213165 58213520 58213165 ID=Msa0509730-mRNA-1:three_prime_utr;Parent=Msa0509730-mRNA-1
Gene Sequence

>Msa0509730

ATGCAGCTCCCCTGCTGCACACATTCTCTCCTCAGATTCATTCCTTCTTATAAATCGTCACCCTTTTCTACTATTCATTTCAATTTCAACACCTCCTCATTCTCCTATAAACCCCCCAAATTCCCATCTCCCATTGCTGCCGCCACCATGTCCACTGCTGTTTCCACTGACACTATCACTCCTTTGCAGGTTGCAAAGCGGTTAGAGAAGTTCAAAACAACAATTTTCACCCAAATGAGTATGCTTGCCATCAAACATGGTGCTATTAATCTTGGTCAGGGTTTTCCAAATTTTGATGGTCCAGACTTTGTAAAGGAAGCAGCCATTCAAGCAATCAGGGACGGGAATAATCAGTATGCTAGGGGTTATGGAGTTCCAGACCTCAACATTGCCATTTCTGAAAGGTTTAAGAAAGATACTGGGCTAGTTGTAGACCCTGAAAAGGAAATTACTGTTACGTCTGGTTGCACGGAAGCAATTGCTGCAACTGTGTTAGGATTGATAAATCCCGGTGATGAGGTTATCGTGTTTGCCCCTTTTTATGATTCTTATGAAGCCACTTTATCCATGGCTGGTGCAAAAGTAAAAGGCATCACTCTGCGCCCTCCAGATTTTGCTCTACCCATTGAAGAGTTGAAGTCTGTGATCTCAAAGAATACTCGTGCCATTCTTTTAAATACCCCTCACAATCCTACTGGAAAGATGTTCACTCGAGAGGAGCTCAATACCATCGCTTCTCTTTGCATTGAGAATGATGTTCTAGTTTTTTCTGATGAAGTGTATGATAAGTTGGCATTTGATATGGAACACATTTCAATTGCTTCTTTGCCAGGAATGTTCGAGCGGACGGTGACAATGAACTCATTAGGGAAGACATTCTCCTTGACTGGATGGAAAATCGGCTGGGCCATAGCACCTCCACACTTAACATGGGGAGTGCGACAGGCACATGCTTTCCTTACTTTTGCAACCTCAAATCCTATGCAGTGGGCTGCTGCAGTAGCTCTAAGAGCACCAGATTCTTATTACACTGAACTAAAGAGGGACTATATGGCAAAGAGAGCTATTTTGGTTGAAGGATTGAAGGCCGTTGGCTTCAAGGTATTCCCGTCTAGTGGAACCTACTTTGTGGTTGTAGATCACACCCCTTTTGGACATGAAAATGATATTGCATTTTGCGAATATCTAGTTAAGGAGGTGGGAGTAGTGGCAATTCCTACCAGTGTGTTTTACTTGAATCCAGAAGAAGGAAAGAATCTAGTCCGTTTTACTTTCTGCAAGGATGAAGGAACTCTTAGGGCCGCTGTTGAGAGGATGAAGGAGAAGCTTAGAAAATGA
Protein sequence

>Msa0509730

MQLPCCTHSLLRFIPSYKSSPFSTIHFNFNTSSFSYKPPKFPSPIAAATMSTAVSTDTITPLQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKEAAIQAIRDGNNQYARGYGVPDLNIAISERFKKDTGLVVDPEKEITVTSGCTEAIAATVLGLINPGDEVIVFAPFYDSYEATLSMAGAKVKGITLRPPDFALPIEELKSVISKNTRAILLNTPHNPTGKMFTREELNTIASLCIENDVLVFSDEVYDKLAFDMEHISIASLPGMFERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHAFLTFATSNPMQWAAAVALRAPDSYYTELKRDYMAKRAILVEGLKAVGFKVFPSSGTYFVVVDHTPFGHENDIAFCEYLVKEVGVVAIPTSVFYLNPEEGKNLVRFTFCKDEGTLRAAVERMKEKLRK*