Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417380 | XP_003601072.2 | 97.303 | 445 | 12 | 0 | 1 | 445 | 1 | 445 | 0.0 | 897 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417380 | sp|P77806|YBDL_ECOLI | 40.838 | 382 | 224 | 2 | 61 | 441 | 5 | 385 | 5.32e-103 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417380 | G7J330 | 97.303 | 445 | 12 | 0 | 1 | 445 | 1 | 445 | 0.0 | 897 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0389610 | Msa0417380 | 0.802042 | 6.767138e-49 | -8.615850e-47 |
| Msa0417380 | Msa0509730 | 0.916261 | 2.202626e-85 | -8.615850e-47 |
| Msa0417380 | Msa1297050 | 0.830695 | 2.540785e-55 | -8.615850e-47 |
| Msa0417380 | Msa1340460 | 0.905049 | 6.471218e-80 | -8.615850e-47 |
| Msa0277010 | Msa0417380 | 0.812192 | 4.796892e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417380 | MtrunA17_Chr3g0114811 | 97.303 | 445 | 12 | 0 | 1 | 445 | 1 | 445 | 0.0 | 897 |
| Msa0417380 | MtrunA17_Chr3g0114831 | 81.884 | 414 | 67 | 2 | 39 | 445 | 396 | 808 | 0.0 | 716 |
| Msa0417380 | MtrunA17_Chr3g0114831 | 74.221 | 353 | 66 | 2 | 54 | 406 | 1 | 328 | 0.0 | 539 |
| Msa0417380 | MtrunA17_Chr1g0195061 | 39.594 | 394 | 222 | 5 | 63 | 443 | 4 | 394 | 1.23e-86 | 270 |
| Msa0417380 | MtrunA17_Chr7g0267911 | 28.509 | 456 | 289 | 13 | 19 | 443 | 15 | 464 | 1.33e-52 | 183 |
| Msa0417380 | MtrunA17_Chr8g0382671 | 28.825 | 451 | 290 | 12 | 14 | 443 | 26 | 466 | 2.26e-51 | 180 |
| Msa0417380 | MtrunA17_Chr8g0360241 | 24.194 | 372 | 255 | 9 | 89 | 440 | 43 | 407 | 3.94e-23 | 100 |
| Msa0417380 | MtrunA17_Chr2g0324801 | 25.414 | 362 | 245 | 12 | 96 | 440 | 22 | 375 | 9.25e-22 | 96.7 |
| Msa0417380 | MtrunA17_Chr4g0004131 | 26.108 | 406 | 253 | 20 | 63 | 445 | 6 | 387 | 1.00e-21 | 96.7 |
| Msa0417380 | MtrunA17_Chr6g0462441 | 26.645 | 304 | 182 | 14 | 138 | 431 | 131 | 403 | 8.20e-15 | 75.9 |
| Msa0417380 | MtrunA17_Chr6g0488041 | 22.956 | 318 | 215 | 10 | 148 | 441 | 121 | 432 | 1.38e-13 | 72.4 |
| Msa0417380 | MtrunA17_Chr3g0135251 | 22.043 | 372 | 245 | 13 | 98 | 440 | 69 | 424 | 1.58e-12 | 69.3 |
| Msa0417380 | MtrunA17_Chr2g0278911 | 24.739 | 287 | 187 | 9 | 114 | 379 | 103 | 381 | 2.37e-11 | 65.5 |
| Msa0417380 | MtrunA17_Chr4g0054371 | 23.467 | 375 | 240 | 16 | 99 | 440 | 71 | 431 | 3.75e-11 | 65.1 |
| Msa0417380 | MtrunA17_Chr6g0462501 | 25.926 | 216 | 141 | 9 | 167 | 377 | 63 | 264 | 5.10e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417380 | AT1G77670.1 | 79.720 | 429 | 74 | 4 | 20 | 445 | 20 | 438 | 0.0 | 716 |
| Msa0417380 | AT2G22250.1 | 29.639 | 415 | 265 | 12 | 47 | 443 | 14 | 419 | 4.42e-54 | 186 |
| Msa0417380 | AT2G22250.3 | 29.639 | 415 | 265 | 12 | 47 | 443 | 61 | 466 | 1.05e-53 | 186 |
| Msa0417380 | AT2G22250.2 | 29.639 | 415 | 265 | 12 | 47 | 443 | 61 | 466 | 1.05e-53 | 186 |
| Msa0417380 | AT5G36160.1 | 26.133 | 375 | 244 | 14 | 89 | 440 | 45 | 409 | 8.45e-26 | 109 |
| Msa0417380 | AT2G20610.1 | 25.722 | 381 | 249 | 14 | 80 | 440 | 67 | 433 | 3.39e-25 | 107 |
| Msa0417380 | AT4G28410.1 | 23.936 | 376 | 261 | 10 | 84 | 440 | 66 | 435 | 7.97e-24 | 103 |
| Msa0417380 | AT2G20610.2 | 25.141 | 354 | 236 | 13 | 80 | 413 | 67 | 411 | 1.30e-22 | 100 |
| Msa0417380 | AT2G24850.1 | 25.882 | 340 | 229 | 12 | 117 | 440 | 85 | 417 | 1.80e-22 | 99.8 |
| Msa0417380 | AT4G28420.2 | 23.514 | 387 | 262 | 14 | 81 | 445 | 62 | 436 | 3.50e-21 | 95.9 |
| Msa0417380 | AT5G53970.1 | 23.861 | 373 | 255 | 11 | 89 | 440 | 36 | 400 | 4.29e-21 | 95.5 |
| Msa0417380 | AT4G28410.2 | 22.841 | 359 | 256 | 10 | 84 | 423 | 66 | 422 | 1.29e-20 | 94.0 |
| Msa0417380 | AT4G23590.1 | 24.793 | 363 | 228 | 11 | 105 | 440 | 58 | 402 | 4.77e-19 | 89.4 |
| Msa0417380 | AT1G80360.3 | 22.513 | 382 | 261 | 11 | 80 | 445 | 24 | 386 | 2.81e-18 | 86.7 |
| Msa0417380 | AT1G80360.2 | 22.513 | 382 | 261 | 11 | 80 | 445 | 24 | 386 | 2.81e-18 | 86.7 |
| Msa0417380 | AT1G80360.4 | 22.513 | 382 | 261 | 11 | 80 | 445 | 24 | 386 | 2.81e-18 | 86.7 |
| Msa0417380 | AT1G80360.1 | 22.513 | 382 | 261 | 11 | 80 | 445 | 24 | 386 | 2.81e-18 | 86.7 |
| Msa0417380 | AT4G28420.1 | 23.556 | 225 | 164 | 6 | 81 | 302 | 62 | 281 | 8.84e-18 | 85.1 |
| Msa0417380 | AT4G23600.1 | 25.138 | 362 | 228 | 13 | 105 | 440 | 58 | 402 | 1.04e-17 | 85.5 |
| Msa0417380 | AT4G23600.2 | 25.161 | 310 | 199 | 9 | 152 | 440 | 1 | 298 | 2.12e-16 | 80.1 |
| Msa0417380 | AT4G23600.3 | 25.076 | 331 | 210 | 12 | 105 | 409 | 58 | 376 | 3.45e-15 | 77.4 |
| Msa0417380 | AT3G49700.1 | 23.656 | 372 | 239 | 15 | 99 | 441 | 71 | 426 | 1.36e-13 | 72.8 |
| Msa0417380 | AT5G51690.2 | 23.460 | 341 | 233 | 13 | 124 | 441 | 30 | 365 | 2.06e-13 | 72.0 |
| Msa0417380 | AT5G51690.1 | 23.460 | 341 | 233 | 13 | 124 | 441 | 153 | 488 | 2.60e-13 | 72.0 |
| Msa0417380 | AT4G08040.1 | 25.159 | 314 | 209 | 11 | 149 | 440 | 111 | 420 | 8.97e-13 | 70.5 |
| Msa0417380 | AT2G13810.1 | 23.123 | 333 | 196 | 12 | 121 | 416 | 106 | 415 | 9.82e-12 | 67.0 |
| Msa0417380 | AT5G65800.1 | 23.404 | 282 | 188 | 10 | 123 | 380 | 86 | 363 | 1.42e-11 | 66.6 |
Find 153 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTACCTACATTTCAATTTC+TGG | 0.052999 | 3_2:+64538713 | None:intergenic |
| AGCAATGAGAGATGGGAATT+TGG | 0.202883 | 3_2:+64540992 | None:intergenic |
| AGGTCACACGGCCCCGTTTC+TGG | 0.204668 | 3_2:+64541182 | None:intergenic |
| TATGGCAAAGAGAGCTATTT+TGG | 0.213807 | 3_2:-64539056 | Msa0417380:CDS |
| ACTAGATTCTTTCCTTCTTC+TGG | 0.222870 | 3_2:+64538866 | None:intergenic |
| GCAATGAGAGATGGGAATTT+GGG | 0.255815 | 3_2:+64540993 | None:intergenic |
| GCTTCATAAGAATCATAAAA+AGG | 0.262851 | 3_2:+64539571 | None:intergenic |
| AGCCATCACAACTGAGATTC+AGG | 0.276927 | 3_2:+64538610 | None:intergenic |
| GAAAGGTTTAAGAAAGATAC+TGG | 0.287130 | 3_2:-64539706 | Msa0417380:CDS |
| GCAATTGCTGCAACTGTGTT+AGG | 0.312345 | 3_2:-64539631 | Msa0417380:CDS |
| GCAAGGATGAAGGAACTCTT+AGG | 0.314890 | 3_2:-64538829 | Msa0417380:CDS |
| AAGTCTGGACCATCAAAATT+TGG | 0.315231 | 3_2:+64539820 | None:intergenic |
| TGATAAGTTGGCATTTGATA+TGG | 0.319352 | 3_2:-64539323 | Msa0417380:CDS |
| AATCAGTATGCTAGGGGTTA+TGG | 0.333698 | 3_2:-64539757 | Msa0417380:CDS |
| TGACAATATCACTCCTTTGC+AGG | 0.339654 | 3_2:-64540940 | Msa0417380:intron |
| CCCGTCCCTGATTGCTTGAA+TGG | 0.339775 | 3_2:+64539783 | None:intergenic |
| ATTAATAGCACCATGTTTGA+TGG | 0.343864 | 3_2:+64539858 | None:intergenic |
| TCCTTGACTGGATGGAAAAT+CGG | 0.347205 | 3_2:-64539226 | Msa0417380:CDS |
| GCTGCTTCCTTTACAAAGTC+TGG | 0.355176 | 3_2:+64539805 | None:intergenic |
| TGATGGCAAGCATACTCATT+TGG | 0.355864 | 3_2:+64539875 | None:intergenic |
| ATGGCTGGTGCAAAAGTAAA+AGG | 0.357091 | 3_2:-64539538 | Msa0417380:CDS |
| TTTCTTAAACCTTTCAGAAA+TGG | 0.358048 | 3_2:+64539714 | None:intergenic |
| ACGGTGACAATGAACTCATT+AGG | 0.363636 | 3_2:-64539259 | Msa0417380:CDS |
| TGAACTAAAGAGGGACTATA+TGG | 0.367867 | 3_2:-64539074 | Msa0417380:CDS |
| GTTGTAGATCACACCCCTTT+TGG | 0.368199 | 3_2:-64538974 | Msa0417380:CDS |
| GATGGCAAGCATACTCATTT+GGG | 0.373899 | 3_2:+64539876 | None:intergenic |
| ACCGTCCGCTCGAACATTCC+TGG | 0.379988 | 3_2:+64539277 | None:intergenic |
| CGGTCCTTCCTACCAGAAAC+GGG | 0.387858 | 3_2:-64541194 | Msa0417380:five_prime_UTR |
| AGTTCAGTGTAATAAGAATC+TGG | 0.396562 | 3_2:+64539091 | None:intergenic |
| TCCCAAATTCGTGTGAAAAC+TGG | 0.397703 | 3_2:-64538478 | Msa0417380:three_prime_UTR |
| TGGTGCTATTAATCTTGGTC+AGG | 0.399769 | 3_2:-64539848 | Msa0417380:CDS |
| ATTGAAGGCCGTTGGCTTCA+AGG | 0.407137 | 3_2:-64539026 | Msa0417380:CDS |
| AAGCAGCCATTCAAGCAATC+AGG | 0.417683 | 3_2:-64539789 | Msa0417380:CDS |
| AAACATGGTGCTATTAATCT+TGG | 0.428947 | 3_2:-64539853 | Msa0417380:CDS |
| AAGTCAGAAAGGAATCAAAT+TGG | 0.429177 | 3_2:-64541147 | Msa0417380:five_prime_UTR |
| ATTTCAATTGCTTCTTTGCC+AGG | 0.432311 | 3_2:-64539295 | Msa0417380:CDS |
| CGGTGACAATGAACTCATTA+GGG | 0.433243 | 3_2:-64539258 | Msa0417380:CDS |
| TCGGTCCTTCCTACCAGAAA+CGG | 0.434477 | 3_2:-64541195 | Msa0417380:five_prime_UTR |
| GATTTGAGGTTGCAAAAGTA+AGG | 0.436033 | 3_2:+64539149 | None:intergenic |
| GTGAGGGGTATTTAAAAGAA+TGG | 0.436908 | 3_2:+64539441 | None:intergenic |
| ATTGAAATGAATAGTAGAAA+AGG | 0.440172 | 3_2:+64541046 | None:intergenic |
| TTCAATGAATAATAGTTTGA+AGG | 0.440260 | 3_2:-64538579 | Msa0417380:three_prime_UTR |
| GGGAAGACATTCTCCTTGAC+TGG | 0.450453 | 3_2:-64539238 | Msa0417380:CDS |
| CACAGACTTCAACTCTTCAA+TGG | 0.452484 | 3_2:+64539483 | None:intergenic |
| AAGGAAATTACTGTTACGTC+TGG | 0.453509 | 3_2:-64539664 | Msa0417380:CDS |
| AGCCCACTGCATAGGATTTG+AGG | 0.459195 | 3_2:+64539135 | None:intergenic |
| ATGAAAATACAAGTCTTAAA+CGG | 0.459296 | 3_2:+64538529 | None:intergenic |
| GAGGAGAGAATGTGTGCAGC+AGG | 0.461446 | 3_2:+64541097 | None:intergenic |
| GAAATGGCAATGTTGAGGTC+TGG | 0.465178 | 3_2:+64539730 | None:intergenic |
| CTTATTACACTGAACTAAAG+AGG | 0.466700 | 3_2:-64539084 | Msa0417380:CDS |
| AATACCCCTCACAATCCTAC+TGG | 0.467702 | 3_2:-64539430 | Msa0417380:CDS |
| TGACTGGATGGAAAATCGGC+TGG | 0.469672 | 3_2:-64539222 | Msa0417380:CDS |
| TTTACTTTCTGCAAGGATGA+AGG | 0.471593 | 3_2:-64538839 | Msa0417380:CDS |
| CTTAACATGGGGAGTGCGAC+AGG | 0.474775 | 3_2:-64539182 | Msa0417380:CDS |
| TTGAAATGAATAGTAGAAAA+GGG | 0.480865 | 3_2:+64541047 | None:intergenic |
| TGCACCAGCCATGGATAAAG+TGG | 0.482819 | 3_2:+64539549 | None:intergenic |
| TCAATGAATAATAGTTTGAA+GGG | 0.487850 | 3_2:-64538578 | Msa0417380:three_prime_UTR |
| TTTATCTTTGGTGGAGCTTG+AGG | 0.487968 | 3_2:-64541260 | Msa0417380:five_prime_UTR |
| TCAATGGGTAGAGCAAAATC+TGG | 0.488716 | 3_2:+64539499 | None:intergenic |
| GTCTAGTGGAACCTACTTTG+TGG | 0.491445 | 3_2:-64538996 | Msa0417380:CDS |
| CCCCTGAATCTCAGTTGTGA+TGG | 0.499017 | 3_2:-64538612 | Msa0417380:three_prime_UTR |
| TACTGTTACGTCTGGTTGCA+CGG | 0.500814 | 3_2:-64539656 | Msa0417380:CDS |
| GTTGAAGGATTGAAGGCCGT+TGG | 0.502592 | 3_2:-64539034 | Msa0417380:CDS |
| ACAGACTTCAACTCTTCAAT+GGG | 0.503426 | 3_2:+64539484 | None:intergenic |
| GCCAGGAATGTTCGAGCGGA+CGG | 0.505338 | 3_2:-64539278 | Msa0417380:CDS |
| CCAGAAATTGAAATGTAGGT+AGG | 0.505772 | 3_2:-64538713 | Msa0417380:three_prime_UTR |
| TGATGAAGTGTATGATAAGT+TGG | 0.507962 | 3_2:-64539335 | Msa0417380:CDS |
| AACAGCAGTGGACATGGTGG+CGG | 0.511768 | 3_2:+64540968 | None:intergenic |
| TTATGAAGCCACTTTATCCA+TGG | 0.512377 | 3_2:-64539557 | Msa0417380:CDS |
| ACGGGAATAATCAGTATGCT+AGG | 0.513864 | 3_2:-64539765 | Msa0417380:CDS |
| CAAAGTAGGTTCCACTAGAC+GGG | 0.518051 | 3_2:+64538999 | None:intergenic |
| GAAGCCACTTTATCCATGGC+TGG | 0.518436 | 3_2:-64539553 | Msa0417380:CDS |
| CGAATATCTAGTTAAGGAGG+TGG | 0.518440 | 3_2:-64538927 | Msa0417380:CDS |
| TGTTAAGTGTGGAGGTGCTA+TGG | 0.525056 | 3_2:+64539198 | None:intergenic |
| TAGCACCTCCACACTTAACA+TGG | 0.526143 | 3_2:-64539195 | Msa0417380:CDS |
| ATCTTTCCAGTAGGATTGTG+AGG | 0.528488 | 3_2:+64539424 | None:intergenic |
| AGACATTCTCCTTGACTGGA+TGG | 0.528851 | 3_2:-64539234 | Msa0417380:CDS |
| GACTGGATGGAAAATCGGCT+GGG | 0.530502 | 3_2:-64539221 | Msa0417380:CDS |
| GGAGAGAATGTGTGCAGCAG+GGG | 0.532845 | 3_2:+64541099 | None:intergenic |
| GCCATTCAAGCAATCAGGGA+CGG | 0.533299 | 3_2:-64539784 | Msa0417380:CDS |
| CATCCTTGCAGAAAGTAAAA+CGG | 0.534086 | 3_2:+64538843 | None:intergenic |
| CGCGAAGCATTAAGTCAGAA+AGG | 0.535158 | 3_2:-64541158 | Msa0417380:five_prime_UTR |
| CCATTCAAGCAATCAGGGAC+GGG | 0.541030 | 3_2:-64539783 | Msa0417380:CDS |
| GGTGCTATTAATCTTGGTCA+GGG | 0.541754 | 3_2:-64539847 | Msa0417380:CDS |
| GCCATCACAACTGAGATTCA+GGG | 0.544523 | 3_2:+64538611 | None:intergenic |
| TATTATGTTTCACTCTCCGT+CGG | 0.549348 | 3_2:-64541214 | Msa0417380:five_prime_UTR |
| CAAGGATGAAGGAACTCTTA+GGG | 0.549677 | 3_2:-64538828 | Msa0417380:CDS |
| GTGGCGGCAGCAATGAGAGA+TGG | 0.550089 | 3_2:+64540984 | None:intergenic |
| CTCAATGCAAAGAGAAGCGA+TGG | 0.550862 | 3_2:+64539378 | None:intergenic |
| GCTAGTTGTAGACCCTGAAA+AGG | 0.557242 | 3_2:-64539683 | Msa0417380:CDS |
| AAGGGTAACGATTTATGAGA+AGG | 0.560494 | 3_2:+64541065 | None:intergenic |
| CTCTTAGGGCCGCTGTTGAG+AGG | 0.560698 | 3_2:-64538814 | Msa0417380:CDS |
| CGGGAATAATCAGTATGCTA+GGG | 0.561122 | 3_2:-64539764 | Msa0417380:CDS |
| TGGCGGCAGCAATGAGAGAT+GGG | 0.562805 | 3_2:+64540985 | None:intergenic |
| CAATGAGAGATGGGAATTTG+GGG | 0.563563 | 3_2:+64540994 | None:intergenic |
| CGGCCCCGTTTCTGGTAGGA+AGG | 0.564151 | 3_2:+64541190 | None:intergenic |
| TTATTACACTGAACTAAAGA+GGG | 0.567688 | 3_2:-64539083 | Msa0417380:CDS |
| ACTGCAGCAGCCCACTGCAT+AGG | 0.569164 | 3_2:+64539127 | None:intergenic |
| ACAAAGTAGGTTCCACTAGA+CGG | 0.569906 | 3_2:+64538998 | None:intergenic |
| GTGTTAGGATTGATAAATCC+CGG | 0.569928 | 3_2:-64539616 | Msa0417380:CDS |
| TGATGGTCCAGACTTTGTAA+AGG | 0.572265 | 3_2:-64539812 | Msa0417380:CDS |
| TCAACATTGCCATTTCTGAA+AGG | 0.572406 | 3_2:-64539723 | Msa0417380:CDS |
| TAAATAGGATGAACCTGCAA+AGG | 0.572640 | 3_2:+64540927 | None:intergenic |
| AAACACGATAACCTCATCAC+CGG | 0.572871 | 3_2:+64539597 | None:intergenic |
| AGCAGCCATTCAAGCAATCA+GGG | 0.573003 | 3_2:-64539788 | Msa0417380:CDS |
| CGCACTCCCCATGTTAAGTG+TGG | 0.576137 | 3_2:+64539187 | None:intergenic |
| CGAGTGAACATCTTTCCAGT+AGG | 0.577547 | 3_2:+64539415 | None:intergenic |
| AGTTAAGGAGGTGGGAGTAG+TGG | 0.579382 | 3_2:-64538918 | Msa0417380:CDS |
| GTGATCTACAACCACAAAGT+AGG | 0.583391 | 3_2:+64538985 | None:intergenic |
| AGGAGAGAATGTGTGCAGCA+GGG | 0.589039 | 3_2:+64541098 | None:intergenic |
| ATGAGAGATGGGAATTTGGG+GGG | 0.590901 | 3_2:+64540996 | None:intergenic |
| TTCAAGGTATTCCCGTCTAG+TGG | 0.593396 | 3_2:-64539010 | Msa0417380:CDS |
| TCTTTCCAGTAGGATTGTGA+GGG | 0.595542 | 3_2:+64539425 | None:intergenic |
| TTTCAGAAATGGCAATGTTG+AGG | 0.596285 | 3_2:+64539725 | None:intergenic |
| AGCACCTCCACACTTAACAT+GGG | 0.605376 | 3_2:-64539194 | Msa0417380:CDS |
| AACCTCAAATCCTATGCAGT+GGG | 0.606106 | 3_2:-64539137 | Msa0417380:CDS |
| TTGCGAATATCTAGTTAAGG+AGG | 0.612658 | 3_2:-64538930 | Msa0417380:CDS |
| TTCAAGTAAAACACACTGGT+AGG | 0.614437 | 3_2:+64538890 | None:intergenic |
| CAAAGGAGTGATATTGTCAG+TGG | 0.615527 | 3_2:+64540944 | None:intergenic |
| ACTCCCCATGTTAAGTGTGG+AGG | 0.616008 | 3_2:+64539190 | None:intergenic |
| CAATGAATAATAGTTTGAAG+GGG | 0.616083 | 3_2:-64538577 | Msa0417380:three_prime_UTR |
| GGCCGCTGTTGAGAGGATGA+AGG | 0.616475 | 3_2:-64538807 | Msa0417380:CDS |
| CAACCTCAAATCCTATGCAG+TGG | 0.616824 | 3_2:-64539138 | Msa0417380:CDS |
| ATTGATAAATCCCGGTGATG+AGG | 0.617618 | 3_2:-64539608 | Msa0417380:CDS |
| TATGAGAAGGAATGAATCTG+AGG | 0.619584 | 3_2:+64541078 | None:intergenic |
| CGGGAATACCTTGAAGCCAA+CGG | 0.620217 | 3_2:+64539018 | None:intergenic |
| TGGAAAGATGTTCACTCGAG+AGG | 0.626679 | 3_2:-64539410 | Msa0417380:CDS |
| AATGCTTCGCGAAGGTCACA+CGG | 0.631960 | 3_2:+64541170 | None:intergenic |
| AACACGATAACCTCATCACC+GGG | 0.634794 | 3_2:+64539598 | None:intergenic |
| AGTGGAAACAGCAGTGGACA+TGG | 0.636832 | 3_2:+64540962 | None:intergenic |
| ATTGTCAGTGGAAACAGCAG+TGG | 0.639763 | 3_2:+64540956 | None:intergenic |
| CTTTGCCAGGAATGTTCGAG+CGG | 0.643712 | 3_2:-64539282 | Msa0417380:CDS |
| ATGGGTAGAGCAAAATCTGG+AGG | 0.644262 | 3_2:+64539502 | None:intergenic |
| CCATCACAACTGAGATTCAG+GGG | 0.644925 | 3_2:+64538612 | None:intergenic |
| GGGAATAATCAGTATGCTAG+GGG | 0.645649 | 3_2:-64539763 | Msa0417380:CDS |
| AGTATGCTTGCCATCAAACA+TGG | 0.649600 | 3_2:-64539868 | Msa0417380:CDS |
| TTCAATCAACATATAGCACA+CGG | 0.659301 | 3_2:+64538749 | None:intergenic |
| TGGATTCAAGTAAAACACAC+TGG | 0.663871 | 3_2:+64538886 | None:intergenic |
| AATGAGAGATGGGAATTTGG+GGG | 0.665738 | 3_2:+64540995 | None:intergenic |
| TGGGTAGAGCAAAATCTGGA+GGG | 0.667591 | 3_2:+64539503 | None:intergenic |
| AAAGGTTTAAGAAAGATACT+GGG | 0.669115 | 3_2:-64539705 | Msa0417380:CDS |
| CACACGGCCCCGTTTCTGGT+AGG | 0.671507 | 3_2:+64541186 | None:intergenic |
| TCTGACTTAATGCTTCGCGA+AGG | 0.672744 | 3_2:+64541162 | None:intergenic |
| GCACCTCCACACTTAACATG+GGG | 0.680545 | 3_2:-64539193 | Msa0417380:CDS |
| GAATATCTAGTTAAGGAGGT+GGG | 0.681051 | 3_2:-64538926 | Msa0417380:CDS |
| CTCCTTCATCCTCTCAACAG+CGG | 0.683424 | 3_2:+64538805 | None:intergenic |
| CTTTCCAGTAGGATTGTGAG+GGG | 0.686125 | 3_2:+64539426 | None:intergenic |
| TTTCTGGTAGGAAGGACCGA+CGG | 0.714216 | 3_2:+64541198 | None:intergenic |
| CATCACAACTGAGATTCAGG+GGG | 0.722640 | 3_2:+64538613 | None:intergenic |
| GGTCCTTCCTACCAGAAACG+GGG | 0.723494 | 3_2:-64541193 | Msa0417380:five_prime_UTR |
| GGAAACAGCAGTGGACATGG+TGG | 0.727016 | 3_2:+64540965 | None:intergenic |
| TTGTTTGTTAGGTTGCAAAG+CGG | 0.733177 | 3_2:-64539927 | Msa0417380:intron |
| GGGTTTATAGGAGAATGAGG+AGG | 0.748780 | 3_2:+64541016 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAGAAAAAAAAAAAAAATA+AGG | + | chr3_2:64539308-64539327 | None:intergenic | 10.0% |
| !!! | TTATTTTAATCAATGATAAC+AGG | + | chr3_2:64539694-64539713 | None:intergenic | 15.0% |
| !! | AAATTATAAACATAAACACA+TGG | + | chr3_2:64539742-64539761 | None:intergenic | 15.0% |
| !! | TTGAAATGAATAGTAGAAAA+GGG | + | chr3_2:64538659-64538678 | None:intergenic | 20.0% |
| !! | ATTGAAATGAATAGTAGAAA+AGG | + | chr3_2:64538660-64538679 | None:intergenic | 20.0% |
| !!! | ATTTTCCATTAATTCATTTC+TGG | - | chr3_2:64538809-64538828 | Msa0417380:CDS | 20.0% |
| !!! | TTTTCCATTAATTCATTTCT+GGG | - | chr3_2:64538810-64538829 | Msa0417380:CDS | 20.0% |
| !! | TTGAGAATATTCATATTTAC+TGG | - | chr3_2:64538907-64538926 | Msa0417380:CDS | 20.0% |
| !! | AAAATACAAAACCCTAATTT+AGG | - | chr3_2:64539001-64539020 | Msa0417380:CDS | 20.0% |
| !! | AAATACAAAACCCTAATTTA+GGG | - | chr3_2:64539002-64539021 | Msa0417380:CDS | 20.0% |
| !! | GTTAACATCAAATATATGTT+CGG | - | chr3_2:64539032-64539051 | Msa0417380:CDS | 20.0% |
| !! | CATTGAATAATTGATGTATT+TGG | + | chr3_2:64539451-64539470 | None:intergenic | 20.0% |
| !!! | TAAGCAAAAAGTCAATTTTT+AGG | + | chr3_2:64539476-64539495 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTAACCAAAT+AGG | - | chr3_2:64539531-64539550 | Msa0417380:CDS | 20.0% |
| !!! | TTAAGTTGTTTAACCAAATA+GGG | - | chr3_2:64539532-64539551 | Msa0417380:CDS | 20.0% |
| !!! | TTTTTTTTTGGAAGGAAATT+TGG | - | chr3_2:64539656-64539675 | Msa0417380:CDS | 20.0% |
| !! | AATAAGTGAAGAAAAAGATA+AGG | - | chr3_2:64539709-64539728 | Msa0417380:CDS | 20.0% |
| !!! | TTTGCTTTAATTTGTTTGTT+AGG | - | chr3_2:64539765-64539784 | Msa0417380:CDS | 20.0% |
| !! | TTCATAAGAATCATAAAAAG+GGG | + | chr3_2:64540133-64540152 | None:intergenic | 20.0% |
| !! | CTTCATAAGAATCATAAAAA+GGG | + | chr3_2:64540134-64540153 | None:intergenic | 20.0% |
| !! | TTCAATGAATAATAGTTTGA+AGG | - | chr3_2:64541124-64541143 | Msa0417380:exon | 20.0% |
| !! | TCAATGAATAATAGTTTGAA+GGG | - | chr3_2:64541125-64541144 | Msa0417380:exon | 20.0% |
| !! | ATGAAAATACAAGTCTTAAA+CGG | + | chr3_2:64541177-64541196 | None:intergenic | 20.0% |
| ! | TTTCCATTAATTCATTTCTG+GGG | - | chr3_2:64538811-64538830 | Msa0417380:CDS | 25.0% |
| ! | ATTCATATTTACTGGTAGAA+AGG | - | chr3_2:64538915-64538934 | Msa0417380:CDS | 25.0% |
| ! | TTCATATTTACTGGTAGAAA+GGG | - | chr3_2:64538916-64538935 | Msa0417380:CDS | 25.0% |
| ! | AACAAATAGACCCTAAATTA+GGG | + | chr3_2:64539015-64539034 | None:intergenic | 25.0% |
| ! | TAACAAATAGACCCTAAATT+AGG | + | chr3_2:64539016-64539035 | None:intergenic | 25.0% |
| ! | TAAACAAAATCATTGTGCAT+TGG | - | chr3_2:64539082-64539101 | Msa0417380:CDS | 25.0% |
| ! | AAACAAAATCATTGTGCATT+GGG | - | chr3_2:64539083-64539102 | Msa0417380:CDS | 25.0% |
| ! | AAGTTATTCCATAGAGTTTA+AGG | + | chr3_2:64539249-64539268 | None:intergenic | 25.0% |
| ! | TTATGAACTATAATAGTGAC+CGG | - | chr3_2:64539493-64539512 | Msa0417380:CDS | 25.0% |
| ! | TAGCATCATCATATAAACTT+AGG | + | chr3_2:64539558-64539577 | None:intergenic | 25.0% |
| ! | TTTCTTAAACCTTTCAGAAA+TGG | + | chr3_2:64539992-64540011 | None:intergenic | 25.0% |
| ! | AAAGGTTTAAGAAAGATACT+GGG | - | chr3_2:64539998-64540017 | Msa0417380:intron | 25.0% |
| !! | TAACAGTAATTTCCTTTTCA+GGG | + | chr3_2:64540035-64540054 | None:intergenic | 25.0% |
| ! | GCTTCATAAGAATCATAAAA+AGG | + | chr3_2:64540135-64540154 | None:intergenic | 25.0% |
| ! | TTATTACACTGAACTAAAGA+GGG | - | chr3_2:64540620-64540639 | Msa0417380:intron | 25.0% |
| !! | TATCATTTTCATGTCCAAAA+GGG | + | chr3_2:64540746-64540765 | None:intergenic | 25.0% |
| !! | ATATCATTTTCATGTCCAAA+AGG | + | chr3_2:64540747-64540766 | None:intergenic | 25.0% |
| !! | ATTTTGCGAATATCTAGTTA+AGG | - | chr3_2:64540770-64540789 | Msa0417380:intron | 25.0% |
| !! | TTTTCCAGAAATTGAAATGT+AGG | - | chr3_2:64540986-64541005 | Msa0417380:CDS | 25.0% |
| ! | CAATGAATAATAGTTTGAAG+GGG | - | chr3_2:64541126-64541145 | Msa0417380:exon | 25.0% |
| AAGTCAGAAAGGAATCAAAT+TGG | - | chr3_2:64538556-64538575 | Msa0417380:three_prime_UTR | 30.0% | |
| ! | TTCCATTAATTCATTTCTGG+GGG | - | chr3_2:64538812-64538831 | Msa0417380:CDS | 30.0% |
| CAAATATATGTTCGGATTGA+TGG | - | chr3_2:64539040-64539059 | Msa0417380:CDS | 30.0% | |
| !! | ATTGATGGTGGGTATTTATT+TGG | - | chr3_2:64539055-64539074 | Msa0417380:CDS | 30.0% |
| CAATATGTGTTTCAGAATCT+TGG | + | chr3_2:64539124-64539143 | None:intergenic | 30.0% | |
| GCTTATTTCCTTAAACTCTA+TGG | - | chr3_2:64539238-64539257 | Msa0417380:CDS | 30.0% | |
| CATTGAATAATTGATGTACC+TGG | - | chr3_2:64539413-64539432 | Msa0417380:CDS | 30.0% | |
| ATTTGGCTATATTATAGACC+AGG | + | chr3_2:64539434-64539453 | None:intergenic | 30.0% | |
| ATATAAACTTAGGCCCTATT+TGG | + | chr3_2:64539548-64539567 | None:intergenic | 30.0% | |
| ATTAATAGCACCATGTTTGA+TGG | + | chr3_2:64539848-64539867 | None:intergenic | 30.0% | |
| !! | AAACATGGTGCTATTAATCT+TGG | - | chr3_2:64539850-64539869 | Msa0417380:CDS | 30.0% |
| GAAAGGTTTAAGAAAGATAC+TGG | - | chr3_2:64539997-64540016 | Msa0417380:intron | 30.0% | |
| ! | GTAACAGTAATTTCCTTTTC+AGG | + | chr3_2:64540036-64540055 | None:intergenic | 30.0% |
| TGATGAAGTGTATGATAAGT+TGG | - | chr3_2:64540368-64540387 | Msa0417380:intron | 30.0% | |
| ! | TGATAAGTTGGCATTTGATA+TGG | - | chr3_2:64540380-64540399 | Msa0417380:intron | 30.0% |
| AGTTCAGTGTAATAAGAATC+TGG | + | chr3_2:64540615-64540634 | None:intergenic | 30.0% | |
| CTTATTACACTGAACTAAAG+AGG | - | chr3_2:64540619-64540638 | Msa0417380:intron | 30.0% | |
| !!! | TATTTTGGTTGAAGGATTGA+AGG | - | chr3_2:64540662-64540681 | Msa0417380:intron | 30.0% |
| ! | ATCATTTTCATGTCCAAAAG+GGG | + | chr3_2:64540745-64540764 | None:intergenic | 30.0% |
| ! | TTTTACTTGAATCCAGAAGA+AGG | - | chr3_2:64540825-64540844 | Msa0417380:intron | 30.0% |
| TTCAATCAACATATAGCACA+CGG | + | chr3_2:64540957-64540976 | None:intergenic | 30.0% | |
| TATTATGTTTCACTCTCCGT+CGG | - | chr3_2:64538489-64538508 | Msa0417380:three_prime_UTR | 35.0% | |
| TATGAGAAGGAATGAATCTG+AGG | + | chr3_2:64538628-64538647 | None:intergenic | 35.0% | |
| AAGGGTAACGATTTATGAGA+AGG | + | chr3_2:64538641-64538660 | None:intergenic | 35.0% | |
| TAAATAGGATGAACCTGCAA+AGG | + | chr3_2:64538779-64538798 | None:intergenic | 35.0% | |
| AACCCCCAGAAATGAATTAA+TGG | + | chr3_2:64538817-64538836 | None:intergenic | 35.0% | |
| TAGAAAGGGTTTGTGGAAAA+GGG | - | chr3_2:64538930-64538949 | Msa0417380:CDS | 35.0% | |
| GAAGGAAAGGAATGAGAAAA+GGG | - | chr3_2:64538952-64538971 | Msa0417380:CDS | 35.0% | |
| AAGGAAAGGAATGAGAAAAG+GGG | - | chr3_2:64538953-64538972 | Msa0417380:CDS | 35.0% | |
| AGAAAAGGGGATAGATTTCT+AGG | - | chr3_2:64538966-64538985 | Msa0417380:CDS | 35.0% | |
| ATATATGTTCGGATTGATGG+TGG | - | chr3_2:64539043-64539062 | Msa0417380:CDS | 35.0% | |
| ! | TATATGTTCGGATTGATGGT+GGG | - | chr3_2:64539044-64539063 | Msa0417380:CDS | 35.0% |
| TAATTAAGTGCTTACTCCTC+CGG | + | chr3_2:64539515-64539534 | None:intergenic | 35.0% | |
| ACCAGAGATAATATATCGTC+TGG | - | chr3_2:64539617-64539636 | Msa0417380:CDS | 35.0% | |
| ACCAGACGATATATTATCTC+TGG | + | chr3_2:64539621-64539640 | None:intergenic | 35.0% | |
| !!! | AGCAGGAGGGTTTTTTTTTT+TGG | - | chr3_2:64539644-64539663 | Msa0417380:CDS | 35.0% |
| !!! | GGAGGGTTTTTTTTTTTGGA+AGG | - | chr3_2:64539648-64539667 | Msa0417380:CDS | 35.0% |
| ! | TTGTTTGTTAGGTTGCAAAG+CGG | - | chr3_2:64539776-64539795 | Msa0417380:CDS | 35.0% |
| ! | CAGGGTTTTCCAAATTTTGA+TGG | - | chr3_2:64539874-64539893 | Msa0417380:CDS | 35.0% |
| AAGTCTGGACCATCAAAATT+TGG | + | chr3_2:64539886-64539905 | None:intergenic | 35.0% | |
| TTTCAGAAATGGCAATGTTG+AGG | + | chr3_2:64539981-64540000 | None:intergenic | 35.0% | |
| ! | TCAACATTGCCATTTCTGAA+AGG | - | chr3_2:64539980-64539999 | Msa0417380:intron | 35.0% |
| AAGGAAATTACTGTTACGTC+TGG | - | chr3_2:64540039-64540058 | Msa0417380:intron | 35.0% | |
| GTGTTAGGATTGATAAATCC+CGG | - | chr3_2:64540087-64540106 | Msa0417380:intron | 35.0% | |
| ! | TTATGAAGCCACTTTATCCA+TGG | - | chr3_2:64540146-64540165 | Msa0417380:intron | 35.0% |
| ACAGACTTCAACTCTTCAAT+GGG | + | chr3_2:64540222-64540241 | None:intergenic | 35.0% | |
| !! | GTGAGGGGTATTTAAAAGAA+TGG | + | chr3_2:64540265-64540284 | None:intergenic | 35.0% |
| ATTTCAATTGCTTCTTTGCC+AGG | - | chr3_2:64540408-64540427 | Msa0417380:intron | 35.0% | |
| ! | GATTTGAGGTTGCAAAAGTA+AGG | + | chr3_2:64540557-64540576 | None:intergenic | 35.0% |
| TGAACTAAAGAGGGACTATA+TGG | - | chr3_2:64540629-64540648 | Msa0417380:intron | 35.0% | |
| ! | TATGGCAAAGAGAGCTATTT+TGG | - | chr3_2:64540647-64540666 | Msa0417380:intron | 35.0% |
| !!! | AAGAGAGCTATTTTGGTTGA+AGG | - | chr3_2:64540654-64540673 | Msa0417380:intron | 35.0% |
| TTGCGAATATCTAGTTAAGG+AGG | - | chr3_2:64540773-64540792 | Msa0417380:intron | 35.0% | |
| GAATATCTAGTTAAGGAGGT+GGG | - | chr3_2:64540777-64540796 | Msa0417380:intron | 35.0% | |
| TTCAAGTAAAACACACTGGT+AGG | + | chr3_2:64540816-64540835 | None:intergenic | 35.0% | |
| TGGATTCAAGTAAAACACAC+TGG | + | chr3_2:64540820-64540839 | None:intergenic | 35.0% | |
| ACTAGATTCTTTCCTTCTTC+TGG | + | chr3_2:64540840-64540859 | None:intergenic | 35.0% | |
| CATCCTTGCAGAAAGTAAAA+CGG | + | chr3_2:64540863-64540882 | None:intergenic | 35.0% | |
| TTTACTTTCTGCAAGGATGA+AGG | - | chr3_2:64540864-64540883 | Msa0417380:intron | 35.0% | |
| CCTACCTACATTTCAATTTC+TGG | + | chr3_2:64540993-64541012 | None:intergenic | 35.0% | |
| CCAGAAATTGAAATGTAGGT+AGG | - | chr3_2:64540990-64541009 | Msa0417380:CDS | 35.0% | |
| ! | ACCAGTTTTCACACGAATTT+GGG | + | chr3_2:64541229-64541248 | None:intergenic | 35.0% |
| TTTATCTTTGGTGGAGCTTG+AGG | - | chr3_2:64538443-64538462 | Msa0417380:three_prime_UTR | 40.0% | |
| AATGAGAGATGGGAATTTGG+GGG | + | chr3_2:64538711-64538730 | None:intergenic | 40.0% | |
| CAATGAGAGATGGGAATTTG+GGG | + | chr3_2:64538712-64538731 | None:intergenic | 40.0% | |
| GCAATGAGAGATGGGAATTT+GGG | + | chr3_2:64538713-64538732 | None:intergenic | 40.0% | |
| AGCAATGAGAGATGGGAATT+TGG | + | chr3_2:64538714-64538733 | None:intergenic | 40.0% | |
| CAAAGGAGTGATATTGTCAG+TGG | + | chr3_2:64538762-64538781 | None:intergenic | 40.0% | |
| TGACAATATCACTCCTTTGC+AGG | - | chr3_2:64538763-64538782 | Msa0417380:three_prime_UTR | 40.0% | |
| TTACTGGTAGAAAGGGTTTG+TGG | - | chr3_2:64538923-64538942 | Msa0417380:CDS | 40.0% | |
| GTAGAAAGGGTTTGTGGAAA+AGG | - | chr3_2:64538929-64538948 | Msa0417380:CDS | 40.0% | |
| TTTGTGGAAAAGGGAAGGAA+AGG | - | chr3_2:64538939-64538958 | Msa0417380:CDS | 40.0% | |
| GGAAGGAAAGGAATGAGAAA+AGG | - | chr3_2:64538951-64538970 | Msa0417380:CDS | 40.0% | |
| TGAACTATAATAGTGACCGG+AGG | - | chr3_2:64539496-64539515 | Msa0417380:CDS | 40.0% | |
| ATATATCGTCTGGTAGAAGC+AGG | - | chr3_2:64539627-64539646 | Msa0417380:CDS | 40.0% | |
| GATGGCAAGCATACTCATTT+GGG | + | chr3_2:64539830-64539849 | None:intergenic | 40.0% | |
| TGATGGCAAGCATACTCATT+TGG | + | chr3_2:64539831-64539850 | None:intergenic | 40.0% | |
| AGTATGCTTGCCATCAAACA+TGG | - | chr3_2:64539835-64539854 | Msa0417380:CDS | 40.0% | |
| !! | TGGTGCTATTAATCTTGGTC+AGG | - | chr3_2:64539855-64539874 | Msa0417380:CDS | 40.0% |
| !! | GGTGCTATTAATCTTGGTCA+GGG | - | chr3_2:64539856-64539875 | Msa0417380:CDS | 40.0% |
| TGATGGTCCAGACTTTGTAA+AGG | - | chr3_2:64539891-64539910 | Msa0417380:CDS | 40.0% | |
| ACGGGAATAATCAGTATGCT+AGG | - | chr3_2:64539938-64539957 | Msa0417380:intron | 40.0% | |
| CGGGAATAATCAGTATGCTA+GGG | - | chr3_2:64539939-64539958 | Msa0417380:intron | 40.0% | |
| GGGAATAATCAGTATGCTAG+GGG | - | chr3_2:64539940-64539959 | Msa0417380:intron | 40.0% | |
| AATCAGTATGCTAGGGGTTA+TGG | - | chr3_2:64539946-64539965 | Msa0417380:intron | 40.0% | |
| ATTGATAAATCCCGGTGATG+AGG | - | chr3_2:64540095-64540114 | Msa0417380:intron | 40.0% | |
| AAACACGATAACCTCATCAC+CGG | + | chr3_2:64540109-64540128 | None:intergenic | 40.0% | |
| !! | TTTTACTTTTGCACCAGCCA+TGG | + | chr3_2:64540166-64540185 | None:intergenic | 40.0% |
| ATGGCTGGTGCAAAAGTAAA+AGG | - | chr3_2:64540165-64540184 | Msa0417380:intron | 40.0% | |
| TCAATGGGTAGAGCAAAATC+TGG | + | chr3_2:64540207-64540226 | None:intergenic | 40.0% | |
| CACAGACTTCAACTCTTCAA+TGG | + | chr3_2:64540223-64540242 | None:intergenic | 40.0% | |
| TCTTTCCAGTAGGATTGTGA+GGG | + | chr3_2:64540281-64540300 | None:intergenic | 40.0% | |
| ATCTTTCCAGTAGGATTGTG+AGG | + | chr3_2:64540282-64540301 | None:intergenic | 40.0% | |
| ACGGTGACAATGAACTCATT+AGG | - | chr3_2:64540444-64540463 | Msa0417380:intron | 40.0% | |
| CGGTGACAATGAACTCATTA+GGG | - | chr3_2:64540445-64540464 | Msa0417380:intron | 40.0% | |
| TCCTTGACTGGATGGAAAAT+CGG | - | chr3_2:64540477-64540496 | Msa0417380:intron | 40.0% | |
| AACCTCAAATCCTATGCAGT+GGG | - | chr3_2:64540566-64540585 | Msa0417380:intron | 40.0% | |
| ACAAAGTAGGTTCCACTAGA+CGG | + | chr3_2:64540708-64540727 | None:intergenic | 40.0% | |
| GTGATCTACAACCACAAAGT+AGG | + | chr3_2:64540721-64540740 | None:intergenic | 40.0% | |
| CGAATATCTAGTTAAGGAGG+TGG | - | chr3_2:64540776-64540795 | Msa0417380:intron | 40.0% | |
| ! | AGTCCGTTTTACTTTCTGCA+AGG | - | chr3_2:64540857-64540876 | Msa0417380:intron | 40.0% |
| CAAGGATGAAGGAACTCTTA+GGG | - | chr3_2:64540875-64540894 | Msa0417380:intron | 40.0% | |
| GGAAAAATCACAATCTAGGC+AGG | + | chr3_2:64541072-64541091 | None:intergenic | 40.0% | |
| AGGGGGAAAAATCACAATCT+AGG | + | chr3_2:64541076-64541095 | None:intergenic | 40.0% | |
| TCCCAAATTCGTGTGAAAAC+TGG | - | chr3_2:64541225-64541244 | Msa0417380:five_prime_UTR | 40.0% | |
| ! | GACCAGTTTTCACACGAATT+TGG | + | chr3_2:64541230-64541249 | None:intergenic | 40.0% |
| TCTGACTTAATGCTTCGCGA+AGG | + | chr3_2:64538544-64538563 | None:intergenic | 45.0% | |
| ! | CGCGAAGCATTAAGTCAGAA+AGG | - | chr3_2:64538545-64538564 | Msa0417380:three_prime_UTR | 45.0% |
| GGGTTTATAGGAGAATGAGG+AGG | + | chr3_2:64538690-64538709 | None:intergenic | 45.0% | |
| TGGGAATTTGGGGGGTTTAT+AGG | + | chr3_2:64538702-64538721 | None:intergenic | 45.0% | |
| ATGAGAGATGGGAATTTGGG+GGG | + | chr3_2:64538710-64538729 | None:intergenic | 45.0% | |
| ATTGTCAGTGGAAACAGCAG+TGG | + | chr3_2:64538750-64538769 | None:intergenic | 45.0% | |
| AAGGGTTTGTGGAAAAGGGA+AGG | - | chr3_2:64538934-64538953 | Msa0417380:CDS | 45.0% | |
| TCTCTGGTCCTTACACCAAT+CGG | + | chr3_2:64539605-64539624 | None:intergenic | 45.0% | |
| GCTGCTTCCTTTACAAAGTC+TGG | + | chr3_2:64539901-64539920 | None:intergenic | 45.0% | |
| AAGCAGCCATTCAAGCAATC+AGG | - | chr3_2:64539914-64539933 | Msa0417380:CDS | 45.0% | |
| AGCAGCCATTCAAGCAATCA+GGG | - | chr3_2:64539915-64539934 | Msa0417380:CDS | 45.0% | |
| GAAATGGCAATGTTGAGGTC+TGG | + | chr3_2:64539976-64539995 | None:intergenic | 45.0% | |
| GCTAGTTGTAGACCCTGAAA+AGG | - | chr3_2:64540020-64540039 | Msa0417380:intron | 45.0% | |
| TACTGTTACGTCTGGTTGCA+CGG | - | chr3_2:64540047-64540066 | Msa0417380:intron | 45.0% | |
| GCAATTGCTGCAACTGTGTT+AGG | - | chr3_2:64540072-64540091 | Msa0417380:intron | 45.0% | |
| AACACGATAACCTCATCACC+GGG | + | chr3_2:64540108-64540127 | None:intergenic | 45.0% | |
| TGGGTAGAGCAAAATCTGGA+GGG | + | chr3_2:64540203-64540222 | None:intergenic | 45.0% | |
| ATGGGTAGAGCAAAATCTGG+AGG | + | chr3_2:64540204-64540223 | None:intergenic | 45.0% | |
| AATACCCCTCACAATCCTAC+TGG | - | chr3_2:64540273-64540292 | Msa0417380:intron | 45.0% | |
| CTTTCCAGTAGGATTGTGAG+GGG | + | chr3_2:64540280-64540299 | None:intergenic | 45.0% | |
| CGAGTGAACATCTTTCCAGT+AGG | + | chr3_2:64540291-64540310 | None:intergenic | 45.0% | |
| TGGAAAGATGTTCACTCGAG+AGG | - | chr3_2:64540293-64540312 | Msa0417380:intron | 45.0% | |
| CTCAATGCAAAGAGAAGCGA+TGG | + | chr3_2:64540328-64540347 | None:intergenic | 45.0% | |
| AGACATTCTCCTTGACTGGA+TGG | - | chr3_2:64540469-64540488 | Msa0417380:intron | 45.0% | |
| !! | TGTTAAGTGTGGAGGTGCTA+TGG | + | chr3_2:64540508-64540527 | None:intergenic | 45.0% |
| TAGCACCTCCACACTTAACA+TGG | - | chr3_2:64540508-64540527 | Msa0417380:intron | 45.0% | |
| AGCACCTCCACACTTAACAT+GGG | - | chr3_2:64540509-64540528 | Msa0417380:intron | 45.0% | |
| CAACCTCAAATCCTATGCAG+TGG | - | chr3_2:64540565-64540584 | Msa0417380:intron | 45.0% | |
| ! | TTCAAGGTATTCCCGTCTAG+TGG | - | chr3_2:64540693-64540712 | Msa0417380:intron | 45.0% |
| CAAAGTAGGTTCCACTAGAC+GGG | + | chr3_2:64540707-64540726 | None:intergenic | 45.0% | |
| GTCTAGTGGAACCTACTTTG+TGG | - | chr3_2:64540707-64540726 | Msa0417380:intron | 45.0% | |
| ! | GTTGTAGATCACACCCCTTT+TGG | - | chr3_2:64540729-64540748 | Msa0417380:intron | 45.0% |
| GCAAGGATGAAGGAACTCTT+AGG | - | chr3_2:64540874-64540893 | Msa0417380:intron | 45.0% | |
| CATCACAACTGAGATTCAGG+GGG | + | chr3_2:64541093-64541112 | None:intergenic | 45.0% | |
| CCATCACAACTGAGATTCAG+GGG | + | chr3_2:64541094-64541113 | None:intergenic | 45.0% | |
| GCCATCACAACTGAGATTCA+GGG | + | chr3_2:64541095-64541114 | None:intergenic | 45.0% | |
| AGCCATCACAACTGAGATTC+AGG | + | chr3_2:64541096-64541115 | None:intergenic | 45.0% | |
| !! | AAAATAAACAATTAATAAAT+AGG | + | chr3_2:64538794-64538813 | None:intergenic | 5.0% |
| ! | TTTCTGGTAGGAAGGACCGA+CGG | + | chr3_2:64538508-64538527 | None:intergenic | 50.0% |
| TCGGTCCTTCCTACCAGAAA+CGG | - | chr3_2:64538508-64538527 | Msa0417380:three_prime_UTR | 50.0% | |
| AATGCTTCGCGAAGGTCACA+CGG | + | chr3_2:64538536-64538555 | None:intergenic | 50.0% | |
| AGGAGAGAATGTGTGCAGCA+GGG | + | chr3_2:64538608-64538627 | None:intergenic | 50.0% | |
| GGGGGGTTTATAGGAGAATG+AGG | + | chr3_2:64538693-64538712 | None:intergenic | 50.0% | |
| AGTGGAAACAGCAGTGGACA+TGG | + | chr3_2:64538744-64538763 | None:intergenic | 50.0% | |
| !!! | CCAATCGGGACGGTTTTGAA+AGG | + | chr3_2:64539590-64539609 | None:intergenic | 50.0% |
| CCTTTCAAAACCGTCCCGAT+TGG | - | chr3_2:64539587-64539606 | Msa0417380:CDS | 50.0% | |
| AAACCGTCCCGATTGGTGTA+AGG | - | chr3_2:64539594-64539613 | Msa0417380:CDS | 50.0% | |
| CTCTGGTCCTTACACCAATC+GGG | + | chr3_2:64539604-64539623 | None:intergenic | 50.0% | |
| TATCGTCTGGTAGAAGCAGG+AGG | - | chr3_2:64539630-64539649 | Msa0417380:CDS | 50.0% | |
| ATCGTCTGGTAGAAGCAGGA+GGG | - | chr3_2:64539631-64539650 | Msa0417380:CDS | 50.0% | |
| GCCATTCAAGCAATCAGGGA+CGG | - | chr3_2:64539919-64539938 | Msa0417380:CDS | 50.0% | |
| CCATTCAAGCAATCAGGGAC+GGG | - | chr3_2:64539920-64539939 | Msa0417380:intron | 50.0% | |
| ! | GAAGCCACTTTATCCATGGC+TGG | - | chr3_2:64540150-64540169 | Msa0417380:intron | 50.0% |
| TGCACCAGCCATGGATAAAG+TGG | + | chr3_2:64540157-64540176 | None:intergenic | 50.0% | |
| CTTTGCCAGGAATGTTCGAG+CGG | - | chr3_2:64540421-64540440 | Msa0417380:intron | 50.0% | |
| GGGAAGACATTCTCCTTGAC+TGG | - | chr3_2:64540465-64540484 | Msa0417380:intron | 50.0% | |
| !! | GCCGATTTTCCATCCAGTCA+AGG | + | chr3_2:64540481-64540500 | None:intergenic | 50.0% |
| TGACTGGATGGAAAATCGGC+TGG | - | chr3_2:64540481-64540500 | Msa0417380:intron | 50.0% | |
| GACTGGATGGAAAATCGGCT+GGG | - | chr3_2:64540482-64540501 | Msa0417380:intron | 50.0% | |
| GCACCTCCACACTTAACATG+GGG | - | chr3_2:64540510-64540529 | Msa0417380:intron | 50.0% | |
| ACTCCCCATGTTAAGTGTGG+AGG | + | chr3_2:64540516-64540535 | None:intergenic | 50.0% | |
| AGCCCACTGCATAGGATTTG+AGG | + | chr3_2:64540571-64540590 | None:intergenic | 50.0% | |
| GTTGAAGGATTGAAGGCCGT+TGG | - | chr3_2:64540669-64540688 | Msa0417380:intron | 50.0% | |
| !! | ATTGAAGGCCGTTGGCTTCA+AGG | - | chr3_2:64540677-64540696 | Msa0417380:intron | 50.0% |
| CGGGAATACCTTGAAGCCAA+CGG | + | chr3_2:64540688-64540707 | None:intergenic | 50.0% | |
| AGTTAAGGAGGTGGGAGTAG+TGG | - | chr3_2:64540785-64540804 | Msa0417380:intron | 50.0% | |
| CTCCTTCATCCTCTCAACAG+CGG | + | chr3_2:64540901-64540920 | None:intergenic | 50.0% | |
| CCCCTGAATCTCAGTTGTGA+TGG | - | chr3_2:64541091-64541110 | Msa0417380:CDS | 50.0% | |
| CGGTCCTTCCTACCAGAAAC+GGG | - | chr3_2:64538509-64538528 | Msa0417380:three_prime_UTR | 55.0% | |
| GGTCCTTCCTACCAGAAACG+GGG | - | chr3_2:64538510-64538529 | Msa0417380:three_prime_UTR | 55.0% | |
| GGAGAGAATGTGTGCAGCAG+GGG | + | chr3_2:64538607-64538626 | None:intergenic | 55.0% | |
| GAGGAGAGAATGTGTGCAGC+AGG | + | chr3_2:64538609-64538628 | None:intergenic | 55.0% | |
| TGGCGGCAGCAATGAGAGAT+GGG | + | chr3_2:64538721-64538740 | None:intergenic | 55.0% | |
| AACAGCAGTGGACATGGTGG+CGG | + | chr3_2:64538738-64538757 | None:intergenic | 55.0% | |
| GGAAACAGCAGTGGACATGG+TGG | + | chr3_2:64538741-64538760 | None:intergenic | 55.0% | |
| GGTCCTTACACCAATCGGGA+CGG | + | chr3_2:64539600-64539619 | None:intergenic | 55.0% | |
| CCCGTCCCTGATTGCTTGAA+TGG | + | chr3_2:64539923-64539942 | None:intergenic | 55.0% | |
| CGCACTCCCCATGTTAAGTG+TGG | + | chr3_2:64540519-64540538 | None:intergenic | 55.0% | |
| ! | CTTAACATGGGGAGTGCGAC+AGG | - | chr3_2:64540521-64540540 | Msa0417380:intron | 55.0% |
| GTGGCGGCAGCAATGAGAGA+TGG | + | chr3_2:64538722-64538741 | None:intergenic | 60.0% | |
| GCCAGGAATGTTCGAGCGGA+CGG | - | chr3_2:64540425-64540444 | Msa0417380:intron | 60.0% | |
| ACCGTCCGCTCGAACATTCC+TGG | + | chr3_2:64540429-64540448 | None:intergenic | 60.0% | |
| ACTGCAGCAGCCCACTGCAT+AGG | + | chr3_2:64540579-64540598 | None:intergenic | 60.0% | |
| CTCTTAGGGCCGCTGTTGAG+AGG | - | chr3_2:64540889-64540908 | Msa0417380:intron | 60.0% | |
| GGCCGCTGTTGAGAGGATGA+AGG | - | chr3_2:64540896-64540915 | Msa0417380:intron | 60.0% | |
| !! | CGGCCCCGTTTCTGGTAGGA+AGG | + | chr3_2:64538516-64538535 | None:intergenic | 65.0% |
| !! | CACACGGCCCCGTTTCTGGT+AGG | + | chr3_2:64538520-64538539 | None:intergenic | 65.0% |
| AGGTCACACGGCCCCGTTTC+TGG | + | chr3_2:64538524-64538543 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 64538437 | 64541288 | 64538437 | ID=Msa0417380;Name=Msa0417380 |
| chr3_2 | mRNA | 64538437 | 64541288 | 64538437 | ID=Msa0417380-mRNA-1;Parent=Msa0417380;Name=Msa0417380-mRNA-1;_AED=0.23;_eAED=0.23;_QI=159|1|1|1|1|1|2|353|445 |
| chr3_2 | exon | 64538437 | 64539938 | 64538437 | ID=Msa0417380-mRNA-1:exon:14347;Parent=Msa0417380-mRNA-1 |
| chr3_2 | exon | 64540941 | 64541288 | 64540941 | ID=Msa0417380-mRNA-1:exon:14346;Parent=Msa0417380-mRNA-1 |
| chr3_2 | five_prime_UTR | 64541130 | 64541288 | 64541130 | ID=Msa0417380-mRNA-1:five_prime_utr;Parent=Msa0417380-mRNA-1 |
| chr3_2 | CDS | 64540941 | 64541129 | 64540941 | ID=Msa0417380-mRNA-1:cds;Parent=Msa0417380-mRNA-1 |
| chr3_2 | CDS | 64538790 | 64539938 | 64538790 | ID=Msa0417380-mRNA-1:cds;Parent=Msa0417380-mRNA-1 |
| chr3_2 | three_prime_UTR | 64538437 | 64538789 | 64538437 | ID=Msa0417380-mRNA-1:three_prime_utr;Parent=Msa0417380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
