AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0510690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0510690 MtrunA17_Chr3g0116941 99.129 459 4 0 2 460 3 461 0.0 939
Msa0510690 MtrunA17_Chr7g0255651 30.890 191 107 6 173 361 305 472 2.28e-19 90.9
Msa0510690 MtrunA17_Chr7g0255641 32.673 202 111 6 159 355 660 841 1.24e-17 85.9
Msa0510690 MtrunA17_Chr4g0026631 35.404 161 86 5 196 355 164 307 2.73e-17 84.0
Msa0510690 MtrunA17_Chr2g0321241 34.161 161 88 4 196 355 169 312 3.04e-17 83.6
Msa0510690 MtrunA17_Chr2g0327121 28.431 204 128 5 159 360 482 669 4.69e-16 80.9
Msa0510690 MtrunA17_Chr4g0038101 35.000 160 85 4 198 355 762 904 4.96e-16 80.9
Msa0510690 MtrunA17_Chr7g0264521 28.780 205 126 6 159 360 481 668 1.65e-15 79.3
Msa0510690 MtrunA17_Chr1g0180791 29.268 205 125 6 159 360 480 667 4.81e-15 77.8
Msa0510690 MtrunA17_Chr7g0255721 31.707 205 107 7 159 354 687 867 9.62e-15 77.0
Msa0510690 MtrunA17_Chr4g0052271 31.401 207 115 8 159 362 121 303 1.52e-14 75.1
Msa0510690 MtrunA17_Chr7g0255691 33.951 162 90 4 196 355 324 470 2.24e-14 75.5
Msa0510690 MtrunA17_Chr4g0004121 28.926 242 132 8 136 355 206 429 1.33e-13 72.8
Msa0510690 MtrunA17_Chr4g0050561 30.000 170 101 4 198 363 196 351 1.52e-13 72.4
Msa0510690 MtrunA17_Chr6g0462581 30.909 165 95 4 196 358 538 685 2.26e-13 72.4
Msa0510690 MtrunA17_Chr2g0327231 28.652 178 111 4 159 336 348 509 3.54e-13 71.6
Msa0510690 MtrunA17_Chr1g0204031 32.716 162 88 5 198 356 598 741 6.29e-13 71.2
Msa0510690 MtrunA17_Chr8g0387641 29.697 165 97 4 196 358 559 706 6.66e-13 71.2
Msa0510690 MtrunA17_Chr5g0397121 30.303 165 96 4 196 358 551 698 1.53e-12 70.1
Msa0510690 MtrunA17_Chr2g0289231 26.786 168 106 3 196 363 343 493 2.03e-12 69.3
Msa0510690 MtrunA17_Chr7g0217421 30.000 160 95 4 198 355 78 222 2.06e-12 68.6
Msa0510690 MtrunA17_Chr3g0127431 28.426 197 115 5 168 359 95 270 4.63e-12 67.8
Msa0510690 MtrunA17_Chr7g0255901 35.570 149 77 5 198 343 678 810 2.16e-11 66.2
Msa0510690 MtrunA17_Chr1g0202381 30.675 163 94 4 198 358 509 654 2.52e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0510690 AT4G24710.3 75.581 430 104 1 31 460 51 479 0.0 677
Msa0510690 AT4G24710.1 75.581 430 104 1 31 460 39 467 0.0 677
Msa0510690 AT4G24710.4 81.788 302 54 1 31 332 51 351 9.88e-178 501
Msa0510690 AT4G24710.2 81.788 302 54 1 31 332 51 351 9.88e-178 501
Msa0510690 AT3G53230.1 28.922 204 127 5 159 360 480 667 5.24e-17 84.3
Msa0510690 AT2G27600.1 34.783 161 87 5 196 355 166 309 1.52e-16 82.0
Msa0510690 AT5G03340.1 28.431 204 128 5 159 360 479 666 3.30e-15 79.0
Msa0510690 AT3G19740.1 33.750 160 87 4 198 355 742 884 8.24e-15 77.8
Msa0510690 AT3G56690.1 30.734 218 124 7 143 355 709 904 8.78e-15 77.4
Msa0510690 AT1G50140.2 33.125 160 88 4 198 355 730 872 1.37e-14 77.0
Msa0510690 AT1G50140.5 33.125 160 88 4 198 355 730 872 1.37e-14 77.0
Msa0510690 AT1G50140.3 33.125 160 88 4 198 355 752 894 1.49e-14 77.0
Msa0510690 AT1G50140.1 33.125 160 88 4 198 355 752 894 1.49e-14 77.0
Msa0510690 AT1G50140.4 33.125 160 88 4 198 355 752 894 1.49e-14 77.0
Msa0510690 AT5G52882.1 26.840 231 112 6 196 424 552 727 1.55e-14 76.6
Msa0510690 AT4G04180.2 26.522 230 110 7 196 424 357 528 2.19e-14 75.9
Msa0510690 AT4G04180.1 26.522 230 110 7 196 424 362 533 2.29e-14 75.9
Msa0510690 AT5G20000.1 30.000 170 101 4 198 363 198 353 5.02e-14 74.3
Msa0510690 AT5G19990.1 30.000 170 101 4 198 363 198 353 5.75e-14 73.9
Msa0510690 AT5G19990.3 30.000 170 101 4 198 363 198 353 5.75e-14 73.9
Msa0510690 AT5G19990.2 30.000 170 101 4 198 363 140 295 6.76e-14 73.2
Msa0510690 AT3G09840.1 29.143 175 108 3 188 360 507 667 7.75e-14 74.3
Msa0510690 AT2G03670.1 29.612 206 114 6 159 355 285 468 1.04e-13 73.9
Msa0510690 AT2G03670.1 31.176 170 95 6 192 355 53 206 4.16e-12 68.9
Msa0510690 AT4G28000.1 29.697 165 97 4 196 358 553 700 4.93e-13 72.0
Msa0510690 AT4G28000.2 29.697 165 97 4 196 358 555 702 5.15e-13 72.0
Msa0510690 AT1G64110.5 29.697 165 97 4 196 358 554 701 5.46e-13 71.6
Msa0510690 AT1G64110.3 29.697 165 97 4 196 358 554 701 5.46e-13 71.6
Msa0510690 AT1G64110.2 29.697 165 97 4 196 358 556 703 5.87e-13 71.6
Msa0510690 AT1G64110.4 29.697 165 97 4 196 358 556 703 5.87e-13 71.6
Msa0510690 AT1G64110.1 29.697 165 97 4 196 358 551 698 6.01e-13 71.6
Msa0510690 AT4G28000.3 29.697 165 97 4 196 358 555 702 6.14e-13 71.6
Msa0510690 AT2G03670.2 31.176 170 95 6 192 355 53 206 3.33e-12 68.6
Msa0510690 AT4G04910.1 26.455 189 124 5 172 355 227 405 7.38e-12 68.2
Msa0510690 AT5G53540.1 29.091 165 95 4 198 359 125 270 1.84e-11 66.2
Msa0510690 AT3G15120.2 31.220 205 124 8 152 354 722 911 5.49e-11 65.9
Msa0510690 AT3G15120.1 31.220 205 124 8 152 354 712 901 5.54e-11 65.9
Msa0510690 AT1G03000.1 35.570 149 77 5 198 343 694 826 8.63e-11 65.1

Find 154 sgRNAs with CRISPR-Local

Find 498 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAGCCTAAACTCGTTTA+AGG 0.144930 3_4:-59829280 None:intergenic
CTACCATTTCTTGAATCTTT+TGG 0.163133 3_4:-59827515 None:intergenic
CACATTCTTTGTTCAGTAAA+TGG 0.170120 3_4:+59825608 Msa0510690:CDS
GCCTGTAGTACATGTCTTTC+AGG 0.195452 3_4:+59824066 Msa0510690:CDS
AATGCTAAATTTGTAATTAC+TGG 0.240772 3_4:-59829482 None:intergenic
TTAGACCAGATTCATATATT+AGG 0.259717 3_4:-59825069 None:intergenic
TAATTACAAATTTAGCATTA+TGG 0.271118 3_4:+59829486 Msa0510690:three_prime_UTR
CCGAACCTTCTGATTCTATT+CGG 0.296498 3_4:+59827705 Msa0510690:CDS
GTGGTTAGAATTATCACATT+TGG 0.315571 3_4:-59827951 None:intergenic
CTTCCTGCAAAAGAATTTGA+TGG 0.316919 3_4:+59824935 Msa0510690:CDS
TGATGCTTGCGAGTTGCAAC+TGG 0.326910 3_4:-59822906 None:intergenic
CGAACCTTCTGATTCTATTC+GGG 0.329197 3_4:+59827706 Msa0510690:CDS
GGGAAGCTACGGCGCCGTTT+TGG 0.331773 3_4:-59822981 None:intergenic
TTGATCCATTCCTTGTTTCA+TGG 0.336034 3_4:+59825146 Msa0510690:CDS
AGAATTTGCGTTTGTGATAC+AGG 0.336533 3_4:+59823490 Msa0510690:CDS
CAAGTGCTTCACTGGCAATA+TGG 0.360508 3_4:-59829409 None:intergenic
CATTCCTTGTTTCATGGAAC+CGG 0.365098 3_4:+59825152 Msa0510690:CDS
CATCAATTCAAGTGCTTCAC+TGG 0.370076 3_4:-59829417 None:intergenic
AAAGTAAACGTCATTTACTA+TGG 0.370572 3_4:-59822719 None:intergenic
TGCTTGTACTTTCCACAATC+TGG 0.371564 3_4:-59822755 None:intergenic
AAGAGGAGTTTGAGCTATAA+TGG 0.374339 3_4:+59823415 Msa0510690:CDS
AATAAGTGATCTGTATTAAC+AGG 0.376994 3_4:+59829345 Msa0510690:three_prime_UTR
TGCAGCCTAATATATGAATC+TGG 0.381687 3_4:+59825064 Msa0510690:intron
TTTCCAAAAGATTCAAGAAA+TGG 0.384973 3_4:+59827512 Msa0510690:CDS
GCATACCAACTTCCCACTTT+CGG 0.390510 3_4:-59825635 None:intergenic
GTAAATGACGTTTACTTTCA+CGG 0.392015 3_4:+59822724 Msa0510690:five_prime_UTR
AAGCCCGGTATGAAATATTA+AGG 0.392685 3_4:+59828522 Msa0510690:CDS
ATTACTGGTGGCCTATTCTC+TGG 0.394568 3_4:-59829467 None:intergenic
GGATCAGTGTCCCGGAGTCT+TGG 0.395027 3_4:+59829307 Msa0510690:three_prime_UTR
GTAGTAGCTTCATGAAAATC+TGG 0.399069 3_4:-59828778 None:intergenic
TCGTCAAGGGGAACGGGAAT+CGG 0.406300 3_4:-59823442 None:intergenic
TTAGCACCTTAAACGAGTTT+AGG 0.409613 3_4:+59829274 Msa0510690:three_prime_UTR
TTGCACATTATCTGCAAGAA+AGG 0.411537 3_4:-59823467 None:intergenic
AGGAAAATTGATTTGAATGA+GGG 0.413815 3_4:-59822851 None:intergenic
AGTAAATGGTTCTCCGAAAG+TGG 0.417358 3_4:+59825622 Msa0510690:CDS
GCTAGAAAAGCTGCTTTGTC+TGG 0.421700 3_4:+59827680 Msa0510690:CDS
GATCAGTGTCCCGGAGTCTT+GGG 0.426434 3_4:+59829308 Msa0510690:three_prime_UTR
ATACTAACTTACTTGATCTC+AGG 0.427096 3_4:+59829220 Msa0510690:three_prime_UTR
TTGATAGGATTGCAATCAAA+AGG 0.427262 3_4:-59829005 None:intergenic
GAGTATAGACGGTCATGTAT+TGG 0.429056 3_4:+59829383 Msa0510690:three_prime_UTR
AGTCTTCTAGCTTCAATGAA+TGG 0.432368 3_4:+59824909 Msa0510690:CDS
ATTGTACATAAGAACTTGAT+AGG 0.435567 3_4:-59829020 None:intergenic
CTTTGACAGCTTAGCGAAGA+AGG 0.439270 3_4:+59824857 Msa0510690:intron
AAGGGTTCGTCAAGGGGAAC+GGG 0.442722 3_4:-59823448 None:intergenic
TGCTTTACTCTTCACTGAAA+AGG 0.448394 3_4:+59825120 Msa0510690:CDS
GAGGAAAATTGATTTGAATG+AGG 0.457041 3_4:-59822852 None:intergenic
TGATCTCAGGGAGATTAAGT+TGG 0.459197 3_4:+59829233 Msa0510690:three_prime_UTR
CCGAATAGAATCAGAAGGTT+CGG 0.463353 3_4:-59827705 None:intergenic
GGTAGAGGAAGAAGGCAATC+TGG 0.464540 3_4:+59827533 Msa0510690:CDS
CAATGCATTATTAACTCAGA+TGG 0.466410 3_4:+59827911 Msa0510690:CDS
AACGAGTTTAGGCTCAATCA+TGG 0.470944 3_4:+59829285 Msa0510690:three_prime_UTR
TCCTCCGGTGGAAGAGGAGG+AGG 0.471701 3_4:-59823030 None:intergenic
GATGTCCGTTCCGCCGTTGA+GGG 0.473816 3_4:+59823198 Msa0510690:CDS
AAGCTTCGCTTACATTAGTC+AGG 0.476102 3_4:-59829077 None:intergenic
GTGCATTCACTTCAACAAGC+TGG 0.486304 3_4:-59825588 None:intergenic
TGCACATTATCTGCAAGAAA+GGG 0.489264 3_4:-59823466 None:intergenic
GATCTCAGGGAGATTAAGTT+GGG 0.489932 3_4:+59829234 Msa0510690:three_prime_UTR
AATATTAAGGTCTTGTGTGC+AGG 0.492194 3_4:+59828535 Msa0510690:CDS
CAATGCACCTCGAATTGAAT+CGG 0.492486 3_4:-59825464 None:intergenic
TCCGGTGGAAGAGGAGGAGG+GGG 0.493517 3_4:-59823027 None:intergenic
AAGACCTTAATATTTCATAC+CGG 0.493523 3_4:-59828526 None:intergenic
TCATACCGGGCTTGAAGAGT+TGG 0.496365 3_4:-59828512 None:intergenic
ATCGTGAATTGAAGCTGTGC+TGG 0.497938 3_4:-59823178 None:intergenic
TGTCAATCCGATTCAATTCG+AGG 0.498172 3_4:+59825457 Msa0510690:CDS
AAAGGGTTCGTCAAGGGGAA+CGG 0.504383 3_4:-59823449 None:intergenic
TGGTGGTAGAGGTGAACGTT+GGG 0.507649 3_4:-59823001 None:intergenic
TACCGGGCTTGAAGAGTTGG+TGG 0.509140 3_4:-59828509 None:intergenic
CGATGTCCGTTCCGCCGTTG+AGG 0.509936 3_4:+59823197 Msa0510690:CDS
TTCATTATAAACCAGAGAAT+AGG 0.511975 3_4:+59829456 Msa0510690:three_prime_UTR
GTGCAGGAACTTATGCGTAC+AGG 0.512151 3_4:+59828551 Msa0510690:CDS
GGTGGGTCTGTGAGAACGAA+GGG 0.513721 3_4:-59822884 None:intergenic
TGCAAGAAAGGGTTCGTCAA+GGG 0.514065 3_4:-59823455 None:intergenic
AACCCTACGACCGACCAAAA+CGG 0.518371 3_4:+59822967 Msa0510690:CDS
TGCATTCACTTCAACAAGCT+GGG 0.518386 3_4:-59825587 None:intergenic
CAATCATGGGATCAGTGTCC+CGG 0.522402 3_4:+59829299 Msa0510690:three_prime_UTR
ACCTGAAAGACATGTACTAC+AGG 0.522775 3_4:-59824067 None:intergenic
GTCTAAAGCAAAGGTTGCTA+CGG 0.528357 3_4:+59825086 Msa0510690:CDS
AATTTGATGGCATGTGGGAA+AGG 0.528949 3_4:+59824948 Msa0510690:CDS
ATCTGTCCACAGGGAATGAG+TGG 0.529805 3_4:+59828933 Msa0510690:intron
AAAGACGTCTTTCCAGTCCC+AGG 0.535392 3_4:-59825411 None:intergenic
CAAGAAATGGTAGAGGAAGA+AGG 0.537039 3_4:+59827525 Msa0510690:CDS
ATGGTGGTAGAGGTGAACGT+TGG 0.542015 3_4:-59823002 None:intergenic
CTTCAACAAGCTGGGCCTGT+GGG 0.542287 3_4:-59825579 None:intergenic
GTTCTCCGAAAGTGGGAAGT+TGG 0.542553 3_4:+59825630 Msa0510690:CDS
AGGTGAACGTTGGGAAGCTA+CGG 0.544888 3_4:-59822992 None:intergenic
AAGTTAGTATTGCTAGCTCC+TGG 0.545184 3_4:-59829207 None:intergenic
GCCCACCAACTCTTCAAGCC+CGG 0.546674 3_4:+59828507 Msa0510690:CDS
TCCAACATTACTGCTGCTAT+CGG 0.546949 3_4:+59827975 Msa0510690:CDS
GAAAACAAGTCCCAAGACTC+CGG 0.550666 3_4:-59829318 None:intergenic
TCCTCAATTTGTCCTTGTCG+AGG 0.550848 3_4:-59822648 None:intergenic
CCCTCCTCCTCTTCCACCGG+AGG 0.551215 3_4:+59823029 Msa0510690:CDS
TAAACTCGTTTAAGGTGCTA+AGG 0.551786 3_4:-59829272 None:intergenic
TTTCCCACTCAGATTCCCAC+AGG 0.553521 3_4:+59825564 Msa0510690:intron
GCTAAATTTGTAATTACTGG+TGG 0.556428 3_4:-59829479 None:intergenic
ATTCATTGAAGCTAGAAGAC+TGG 0.559709 3_4:-59824907 None:intergenic
ACTTCAACAAGCTGGGCCTG+TGG 0.562535 3_4:-59825580 None:intergenic
TGCAGGAACTTATGCGTACA+GGG 0.563349 3_4:+59828552 Msa0510690:CDS
ATTACCCCTCAACGGCGGAA+CGG 0.564389 3_4:-59823203 None:intergenic
GAGTACTTCTCCTACTCCAA+TGG 0.565265 3_4:+59822933 Msa0510690:CDS
ACCGATAGCAGCAGTAATGT+TGG 0.565609 3_4:-59827976 None:intergenic
ATGTCCGTTCCGCCGTTGAG+GGG 0.566371 3_4:+59823199 Msa0510690:CDS
TGCTCCGTCTCCATTGGAGT+AGG 0.567149 3_4:-59822943 None:intergenic
ACGGTAACTTTACCAGATTG+TGG 0.569204 3_4:+59822743 Msa0510690:five_prime_UTR
CGGTTCCATGAAACAAGGAA+TGG 0.570883 3_4:-59825151 None:intergenic
CTCCGGTGGAAGAGGAGGAG+GGG 0.573112 3_4:-59823028 None:intergenic
ATTTATTATACAGAGTTACC+AGG 0.576786 3_4:+59829189 Msa0510690:intron
GCTGATATCAAAGCATATGT+TGG 0.577084 3_4:+59828485 Msa0510690:CDS
AAAGATTCAAGAAATGGTAG+AGG 0.577519 3_4:+59827518 Msa0510690:CDS
AGCAGCAGTAATGTTGGATG+TGG 0.577677 3_4:-59827970 None:intergenic
CCTCCGGTGGAAGAGGAGGA+GGG 0.577752 3_4:-59823029 None:intergenic
TCCTCGACAAGGACAAATTG+AGG 0.578996 3_4:+59822647 Msa0510690:five_prime_UTR
TGTGAGGATATCAGCTCTGA+TGG 0.579798 3_4:+59824884 Msa0510690:CDS
GCATGCTTTATGAGTATAGA+CGG 0.583351 3_4:+59829372 Msa0510690:three_prime_UTR
GCAAGAAAGGGTTCGTCAAG+GGG 0.584552 3_4:-59823454 None:intergenic
CAAAAGAATTTGATGGCATG+TGG 0.585350 3_4:+59824942 Msa0510690:CDS
ATGAATCTGGTCTAAAGCAA+AGG 0.586924 3_4:+59825077 Msa0510690:CDS
AGACCTTAATATTTCATACC+GGG 0.587758 3_4:-59828525 None:intergenic
TTTACCCGAATAGAATCAGA+AGG 0.588127 3_4:-59827710 None:intergenic
ACGAGTTTAGGCTCAATCAT+GGG 0.588245 3_4:+59829286 Msa0510690:three_prime_UTR
GTCCACAGGGAATGAGTGGA+AGG 0.588613 3_4:+59828937 Msa0510690:intron
TACTAACTTACTTGATCTCA+GGG 0.589062 3_4:+59829221 Msa0510690:three_prime_UTR
AATGATAGATACAGCAAAGA+GGG 0.590323 3_4:+59829040 Msa0510690:CDS
AAGACGTCTTTCCAGTCCCA+GGG 0.593674 3_4:-59825410 None:intergenic
GAGGATAAAATTCTCGTCCC+TGG 0.601718 3_4:+59823048 Msa0510690:CDS
TTCTCCTACTCCAATGGAGA+CGG 0.603433 3_4:+59822939 Msa0510690:CDS
AAAACAAGTCCCAAGACTCC+GGG 0.604705 3_4:-59829317 None:intergenic
CTTGCGAGTTGCAACTGGGT+GGG 0.606075 3_4:-59822901 None:intergenic
TTATCCTCCGGTGGAAGAGG+AGG 0.607446 3_4:-59823033 None:intergenic
CTGCAAGAAAGGGTTCGTCA+AGG 0.618408 3_4:-59823456 None:intergenic
GGGTGGGTCTGTGAGAACGA+AGG 0.622013 3_4:-59822885 None:intergenic
GTAAATGGTTCTCCGAAAGT+GGG 0.626891 3_4:+59825623 Msa0510690:CDS
CTCACCGGTTCCATGAAACA+AGG 0.629691 3_4:-59825156 None:intergenic
TGAAGCACTTGAATTGATGA+AGG 0.634626 3_4:+59829421 Msa0510690:three_prime_UTR
TCATCAAGTCAGTCAAGTCA+CGG 0.635247 3_4:+59822789 Msa0510690:five_prime_UTR
TGAAACTGCAGAGGCATGTG+AGG 0.639294 3_4:+59828828 Msa0510690:CDS
GATGCTTGCGAGTTGCAACT+GGG 0.642526 3_4:-59822905 None:intergenic
TGGGTCTGTGAGAACGAAGG+GGG 0.642937 3_4:-59822882 None:intergenic
GAAATTAGTTGAAACTGCAG+AGG 0.644635 3_4:+59828819 Msa0510690:CDS
GTGGGTCTGTGAGAACGAAG+GGG 0.645426 3_4:-59822883 None:intergenic
TAGCGAAGAAGGACCGTGTG+AGG 0.645973 3_4:+59824868 Msa0510690:CDS
TGAATTGAAGCTGTGCTGGA+AGG 0.649944 3_4:-59823174 None:intergenic
ACCGGGCTTGAAGAGTTGGT+GGG 0.651440 3_4:-59828508 None:intergenic
AGGACATAGCTACTTTCACA+AGG 0.653390 3_4:+59822667 Msa0510690:five_prime_UTR
AAAAGAATTTGATGGCATGT+GGG 0.664280 3_4:+59824943 Msa0510690:CDS
GCTTGCGAGTTGCAACTGGG+TGG 0.668100 3_4:-59822902 None:intergenic
AGGAGTTTGAGCTATAATGG+TGG 0.669249 3_4:+59823418 Msa0510690:CDS
GAATTGATGAAGGTGATGCA+TGG 0.669339 3_4:+59829431 Msa0510690:three_prime_UTR
CAATGATAGATACAGCAAAG+AGG 0.670119 3_4:+59829039 Msa0510690:CDS
GAGTAGTCTCATCCTCGACA+AGG 0.675118 3_4:+59822636 Msa0510690:five_prime_UTR
GATAGATTATTACCCCTCAA+CGG 0.678759 3_4:-59823211 None:intergenic
AGACGTCTTTCCAGTCCCAG+GGG 0.712576 3_4:-59825409 None:intergenic
GACGTCTTTCCAGTCCCAGG+GGG 0.718244 3_4:-59825408 None:intergenic
AGATTATTACCCCTCAACGG+CGG 0.725535 3_4:-59823208 None:intergenic
TCAGAGCTGATATCCTCACA+CGG 0.742150 3_4:-59824881 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTAT+AGG + chr3_4:59823998-59824017 Msa0510690:intron 0.0%
!!! TATTTTTTTTATTTTTAAAA+AGG + chr3_4:59826775-59826794 Msa0510690:intron 0.0%
!!! ATTTTTTTTATTTTTAAAAA+GGG + chr3_4:59826776-59826795 Msa0510690:intron 0.0%
!!! ACTAATTTTAATTATTCTAT+CGG + chr3_4:59823335-59823354 Msa0510690:intron 10.0%
!!! ATATGTATTTATTTTTGTAT+TGG + chr3_4:59825187-59825206 Msa0510690:intron 10.0%
!! TAATAATAAGATGTAATAAA+TGG - chr3_4:59826364-59826383 None:intergenic 10.0%
!!! TTTATTTTGTTATAGTTTCT+AGG + chr3_4:59823244-59823263 Msa0510690:intron 15.0%
!!! TTATTTTGTTATAGTTTCTA+GGG + chr3_4:59823245-59823264 Msa0510690:intron 15.0%
!!! CTAATTTTAATTATTCTATC+GGG + chr3_4:59823336-59823355 Msa0510690:intron 15.0%
!!! TTTATTTTCAATTGTTTGTA+TGG + chr3_4:59823527-59823546 Msa0510690:intron 15.0%
!!! TTTTTTTTTTTTATAGGTGA+AGG + chr3_4:59824004-59824023 Msa0510690:intron 15.0%
!!! TTTTTTTTTTTATAGGTGAA+GGG + chr3_4:59824005-59824024 Msa0510690:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr3_4:59824593-59824612 None:intergenic 15.0%
!! AAAGTGAAATATATTGTATT+GGG - chr3_4:59824633-59824652 None:intergenic 15.0%
!! TAAAGTGAAATATATTGTAT+TGG - chr3_4:59824634-59824653 None:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG - chr3_4:59824657-59824676 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr3_4:59824658-59824677 None:intergenic 15.0%
!!! AATTTTTATCCATCATATAA+AGG - chr3_4:59826038-59826057 None:intergenic 15.0%
!! TGTATTAAAAAGCAAAAAAA+TGG + chr3_4:59826286-59826305 Msa0510690:intron 15.0%
!!! AAAAAAAAAAGTATACCAAA+TGG + chr3_4:59827098-59827117 Msa0510690:intron 15.0%
!! ACTATCAATATCATATTTAT+GGG - chr3_4:59828070-59828089 None:intergenic 15.0%
!! AACTATCAATATCATATTTA+TGG - chr3_4:59828071-59828090 None:intergenic 15.0%
!! TTTCAAATGAAAATATATTG+GGG - chr3_4:59828395-59828414 None:intergenic 15.0%
!! GTTTCAAATGAAAATATATT+GGG - chr3_4:59828396-59828415 None:intergenic 15.0%
!!! ATTTTAGTTTGTTAATCTAA+TGG + chr3_4:59828676-59828695 Msa0510690:intron 15.0%
!! TAATTACAAATTTAGCATTA+TGG + chr3_4:59829486-59829505 Msa0510690:three_prime_UTR 15.0%
!!! ATAGAAATTGATTTTCTTTG+TGG + chr3_4:59823271-59823290 Msa0510690:intron 20.0%
!! TGAATTTATGATAATTCAAC+TGG + chr3_4:59823374-59823393 Msa0510690:intron 20.0%
!!! TGATTTTATTGCTATCATTA+TGG + chr3_4:59823561-59823580 Msa0510690:intron 20.0%
!!! TCACTTTAAACGATTTTTTT+TGG + chr3_4:59823770-59823789 Msa0510690:intron 20.0%
!! ATATATTCAATGAGCATATA+TGG + chr3_4:59824178-59824197 Msa0510690:intron 20.0%
!!! TTTTGGATTTAAAAACACAA+AGG - chr3_4:59824217-59824236 None:intergenic 20.0%
!!! TTTGTGTTTTTAAATCCAAA+AGG + chr3_4:59824216-59824235 Msa0510690:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+AGG - chr3_4:59824523-59824542 None:intergenic 20.0%
!! AAATATCAAGATATGTTCAT+AGG - chr3_4:59825346-59825365 None:intergenic 20.0%
!!! GAACATATCTTGATATTTTT+AGG + chr3_4:59825348-59825367 Msa0510690:intron 20.0%
!! ATTGAAAACAAGTAAATGAA+GGG + chr3_4:59825519-59825538 Msa0510690:intron 20.0%
!! AGCTTCAATGTTTATTATAT+TGG + chr3_4:59825739-59825758 Msa0510690:intron 20.0%
!! ATTACATCTTATTATTAGTC+TGG + chr3_4:59826367-59826386 Msa0510690:intron 20.0%
!! TATAAGAGAAACTATTAAGA+AGG - chr3_4:59826650-59826669 None:intergenic 20.0%
!! AAATACATGTGATTAAACAT+AGG - chr3_4:59827069-59827088 None:intergenic 20.0%
!! GTAAATTACATGTATCATTT+AGG + chr3_4:59827245-59827264 Msa0510690:intron 20.0%
!! TGATACTATTAAGAGATTAT+TGG - chr3_4:59827323-59827342 None:intergenic 20.0%
!! TTAAATGACCGTAAAAAAAA+AGG + chr3_4:59828173-59828192 Msa0510690:intron 20.0%
!! TAAATGACCGTAAAAAAAAA+GGG + chr3_4:59828174-59828193 Msa0510690:intron 20.0%
!! CGTTTCAAATGAAAATATAT+TGG - chr3_4:59828397-59828416 None:intergenic 20.0%
!! AATGCTAAATTTGTAATTAC+TGG - chr3_4:59829485-59829504 None:intergenic 20.0%
! AAAGTAAACGTCATTTACTA+TGG - chr3_4:59822722-59822741 None:intergenic 25.0%
!!! TGAGGGTTTTCTTTTAATTT+CGG - chr3_4:59822837-59822856 None:intergenic 25.0%
!!! AGGAAAATTGATTTGAATGA+GGG - chr3_4:59822854-59822873 None:intergenic 25.0%
! AATTGGAATCTATAGAATAG+AGG - chr3_4:59823101-59823120 None:intergenic 25.0%
! ACGAAAATTAGTTGAGAAAT+TGG - chr3_4:59823118-59823137 None:intergenic 25.0%
!!! GATAATTCAACTGGTTTTTT+AGG + chr3_4:59823383-59823402 Msa0510690:intron 25.0%
!! ATTTTCAATTGTTTGTATGG+TGG + chr3_4:59823530-59823549 Msa0510690:intron 25.0%
!!! TTTGATTTTACGTTTACTCA+CGG + chr3_4:59823683-59823702 Msa0510690:intron 25.0%
!!! GAGTAATTTTGACTAAATGT+GGG + chr3_4:59823792-59823811 Msa0510690:intron 25.0%
! TAGCAATTAGTATGTCAATA+TGG + chr3_4:59823870-59823889 Msa0510690:intron 25.0%
! ATATTAGTCAAGCAAAGATA+TGG - chr3_4:59824162-59824181 None:intergenic 25.0%
!!! CTTTTGTTACTTTCTCTTTT+CGG - chr3_4:59824410-59824429 None:intergenic 25.0%
! AACATGCATATAGTAAACAA+AGG + chr3_4:59824443-59824462 Msa0510690:intron 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG - chr3_4:59824545-59824564 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG - chr3_4:59824546-59824565 None:intergenic 25.0%
! ATCAAGAAAACTATAGTTGA+GGG - chr3_4:59825002-59825021 None:intergenic 25.0%
! TATCAAGAAAACTATAGTTG+AGG - chr3_4:59825003-59825022 None:intergenic 25.0%
! TTAGACCAGATTCATATATT+AGG - chr3_4:59825072-59825091 None:intergenic 25.0%
! CATTGAAAACAAGTAAATGA+AGG + chr3_4:59825518-59825537 Msa0510690:intron 25.0%
! ATGACAGAAACTTAAAGTAA+AGG - chr3_4:59825668-59825687 None:intergenic 25.0%
!! ATAAAAGCGTGAATTACAAA+AGG - chr3_4:59825711-59825730 None:intergenic 25.0%
! TAATAAACATTGAAGCTAGT+AGG - chr3_4:59825736-59825755 None:intergenic 25.0%
! ATATGATTATGGTAGTACAT+AGG - chr3_4:59826513-59826532 None:intergenic 25.0%
!! GTTGTTGTTCTATATGATTA+TGG - chr3_4:59826524-59826543 None:intergenic 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG + chr3_4:59826658-59826677 Msa0510690:intron 25.0%
! ACTACCATACTAACAATAAA+TGG + chr3_4:59826696-59826715 Msa0510690:intron 25.0%
!!! TTTTCTTTTTCATCCTGTAT+GGG - chr3_4:59826749-59826768 None:intergenic 25.0%
!!! ATTTTCTTTTTCATCCTGTA+TGG - chr3_4:59826750-59826769 None:intergenic 25.0%
! TTCTTGTATAACGAAATAAG+TGG + chr3_4:59826866-59826885 Msa0510690:intron 25.0%
!! TTGATAGTTAATATGCTTCA+TGG - chr3_4:59826969-59826988 None:intergenic 25.0%
! AAATATTATCCAGGGAAAAA+TGG - chr3_4:59827170-59827189 None:intergenic 25.0%
! TGAACAGAAAATATTATCCA+GGG - chr3_4:59827178-59827197 None:intergenic 25.0%
! ATGAACAGAAAATATTATCC+AGG - chr3_4:59827179-59827198 None:intergenic 25.0%
! AATTACATGTATCATTTAGG+TGG + chr3_4:59827248-59827267 Msa0510690:intron 25.0%
! ATTACATGTATCATTTAGGT+GGG + chr3_4:59827249-59827268 Msa0510690:intron 25.0%
! GATTATTGGACTATAGTTAA+GGG - chr3_4:59827309-59827328 None:intergenic 25.0%
! AGATTATTGGACTATAGTTA+AGG - chr3_4:59827310-59827329 None:intergenic 25.0%
!! TATCATTTGACTATCTGTTT+TGG + chr3_4:59827338-59827357 Msa0510690:intron 25.0%
!!! ACTATCTGTTTTGGAATTTA+AGG + chr3_4:59827347-59827366 Msa0510690:intron 25.0%
! ACAGAGATTAATAAGTCAAT+TGG + chr3_4:59827381-59827400 Msa0510690:intron 25.0%
! TTTCCAAAAGATTCAAGAAA+TGG + chr3_4:59827512-59827531 Msa0510690:CDS 25.0%
!!! AATCTGGTATTTGTTTTGAT+CGG + chr3_4:59827549-59827568 Msa0510690:CDS 25.0%
! CAATCTGAATATTCAATTTC+AGG + chr3_4:59827884-59827903 Msa0510690:intron 25.0%
! AATCACTAAATCCTCATTAA+GGG - chr3_4:59828155-59828174 None:intergenic 25.0%
! TAATCACTAAATCCTCATTA+AGG - chr3_4:59828156-59828175 None:intergenic 25.0%
! ATGTGCTTTATGTTAAAGTA+AGG - chr3_4:59828295-59828314 None:intergenic 25.0%
!!! AAACTATTTTAGGAAGACAT+TGG - chr3_4:59828357-59828376 None:intergenic 25.0%
!! GATCATGAAGAAACTATTTT+AGG - chr3_4:59828367-59828386 None:intergenic 25.0%
! AAGACCTTAATATTTCATAC+CGG - chr3_4:59828529-59828548 None:intergenic 25.0%
!! AGGGATATTAACTAATTTTG+AGG + chr3_4:59828571-59828590 Msa0510690:CDS 25.0%
!! TTCATTTTCGAAAAAGATTC+CGG - chr3_4:59828620-59828639 None:intergenic 25.0%
!!! GAATCTTTTTCGAAAATGAA+AGG + chr3_4:59828620-59828639 Msa0510690:intron 25.0%
! ATTGTACATAAGAACTTGAT+AGG - chr3_4:59829023-59829042 None:intergenic 25.0%
! TTAATTGAACAACTATTACG+TGG - chr3_4:59829103-59829122 None:intergenic 25.0%
! TAAAATGAAGTGGAAATAAG+CGG - chr3_4:59829133-59829152 None:intergenic 25.0%
! ATTTATTATACAGAGTTACC+AGG + chr3_4:59829189-59829208 Msa0510690:intron 25.0%
! AATAAGTGATCTGTATTAAC+AGG + chr3_4:59829345-59829364 Msa0510690:three_prime_UTR 25.0%
! TTCATTATAAACCAGAGAAT+AGG + chr3_4:59829456-59829475 Msa0510690:three_prime_UTR 25.0%
GTAAATGACGTTTACTTTCA+CGG + chr3_4:59822724-59822743 Msa0510690:five_prime_UTR 30.0%
!! GAGGAAAATTGATTTGAATG+AGG - chr3_4:59822855-59822874 None:intergenic 30.0%
! CATTTTGCTTATTATAGTCG+AGG + chr3_4:59823140-59823159 Msa0510690:intron 30.0%
!!! TTTTTAGGATGCTTGAAAAG+AGG + chr3_4:59823398-59823417 Msa0510690:intron 30.0%
TTATTGCTATCATTATGGAG+TGG + chr3_4:59823566-59823585 Msa0510690:intron 30.0%
GTCTTAATGGAACTTTAGAT+TGG - chr3_4:59823649-59823668 None:intergenic 30.0%
ACATCATAAGACAGTCTTAA+TGG - chr3_4:59823662-59823681 None:intergenic 30.0%
TTCTCAATTTCACGACAAAA+GGG - chr3_4:59823727-59823746 None:intergenic 30.0%
!!! GGAGTAATTTTGACTAAATG+TGG + chr3_4:59823791-59823810 Msa0510690:intron 30.0%
AGTATGTCAATATGGAAGAT+AGG + chr3_4:59823878-59823897 Msa0510690:intron 30.0%
TGATCAGTCTATATTGTCTA+GGG - chr3_4:59823939-59823958 None:intergenic 30.0%
TTGATCAGTCTATATTGTCT+AGG - chr3_4:59823940-59823959 None:intergenic 30.0%
!! ATGATAACGTTCTTTTGTTC+TGG + chr3_4:59824035-59824054 Msa0510690:CDS 30.0%
AAACACAAAGGAAAAACCAT+AGG - chr3_4:59824205-59824224 None:intergenic 30.0%
! AATTGAAGCTTATCACCTTT+TGG - chr3_4:59824234-59824253 None:intergenic 30.0%
AAAAGGTGATAAGCTTCAAT+TGG + chr3_4:59824233-59824252 Msa0510690:intron 30.0%
TAATGGGGGAAGTTTATTAT+GGG - chr3_4:59824311-59824330 None:intergenic 30.0%
AGAAAATAGGTCAGTTATTC+CGG - chr3_4:59824510-59824529 None:intergenic 30.0%
CTAAGCAAAGTACAATTAGA+GGG - chr3_4:59824776-59824795 None:intergenic 30.0%
ACTAAGCAAAGTACAATTAG+AGG - chr3_4:59824777-59824796 None:intergenic 30.0%
ATCTCTTTGTTCTGTTAATG+TGG + chr3_4:59824802-59824821 Msa0510690:intron 30.0%
! AAAAGAATTTGATGGCATGT+GGG + chr3_4:59824943-59824962 Msa0510690:CDS 30.0%
AGTTGTGATCACAACATATA+AGG - chr3_4:59825213-59825232 None:intergenic 30.0%
! GTAGAGATACGATATTTTTC+AGG - chr3_4:59825256-59825275 None:intergenic 30.0%
CACATTCTTTGTTCAGTAAA+TGG + chr3_4:59825608-59825627 Msa0510690:CDS 30.0%
GTTTATTATATTGGTGAGCT+TGG + chr3_4:59825748-59825767 Msa0510690:intron 30.0%
TTGATATCAAGCTTGATCAA+AGG + chr3_4:59825836-59825855 Msa0510690:intron 30.0%
AATTCTAACTACCAAACAGT+GGG - chr3_4:59825890-59825909 None:intergenic 30.0%
AAATTCTAACTACCAAACAG+TGG - chr3_4:59825891-59825910 None:intergenic 30.0%
! AACAGGATTTTCATATCTTC+TGG - chr3_4:59825917-59825936 None:intergenic 30.0%
CTTTAACTATTAGCTAGCAT+TGG + chr3_4:59825986-59826005 Msa0510690:intron 30.0%
CCATCATATAAAGGTAGAAT+GGG - chr3_4:59826029-59826048 None:intergenic 30.0%
TCCATCATATAAAGGTAGAA+TGG - chr3_4:59826030-59826049 None:intergenic 30.0%
TGTGTCTTCAAACATAAAGT+TGG - chr3_4:59826062-59826081 None:intergenic 30.0%
TTCTTAGAGGATTATTATGC+TGG + chr3_4:59826082-59826101 Msa0510690:intron 30.0%
TCTTAGAGGATTATTATGCT+GGG + chr3_4:59826083-59826102 Msa0510690:intron 30.0%
CAAAACACTTTATCAATGCA+CGG - chr3_4:59826170-59826189 None:intergenic 30.0%
!!! TAAAGTGTTTTGATTTCCTG+TGG + chr3_4:59826178-59826197 Msa0510690:intron 30.0%
!!! AAAGTGTTTTGATTTCCTGT+GGG + chr3_4:59826179-59826198 Msa0510690:intron 30.0%
TTCAGGAAAAATAGGTTCAT+CGG + chr3_4:59826208-59826227 Msa0510690:intron 30.0%
! CAAATGTGTATGCTTTTGTA+TGG - chr3_4:59826248-59826267 None:intergenic 30.0%
TTCATTGTGATTGGTACTTT+CGG + chr3_4:59826320-59826339 Msa0510690:intron 30.0%
!!! ATTATTAGTCTGGTTTTGCA+AGG + chr3_4:59826377-59826396 Msa0510690:intron 30.0%
TATTGTTAGTATGGTAGTAG+AGG - chr3_4:59826694-59826713 None:intergenic 30.0%
! ACTGCCATTTATTGTTAGTA+TGG - chr3_4:59826703-59826722 None:intergenic 30.0%
!! TATTTTTAAAAAGGGCAACC+AGG + chr3_4:59826784-59826803 Msa0510690:intron 30.0%
GAAGCATATTAACTATCAAG+AGG + chr3_4:59826970-59826989 Msa0510690:intron 30.0%
ACACAACAAAACTACAACTT+TGG - chr3_4:59827448-59827467 None:intergenic 30.0%
! CTACCATTTCTTGAATCTTT+TGG - chr3_4:59827518-59827537 None:intergenic 30.0%
AAAGATTCAAGAAATGGTAG+AGG + chr3_4:59827518-59827537 Msa0510690:CDS 30.0%
! TCGCATTTTCAAAAAATCGT+GGG - chr3_4:59827779-59827798 None:intergenic 30.0%
! ATCGCATTTTCAAAAAATCG+TGG - chr3_4:59827780-59827799 None:intergenic 30.0%
AGAAGTGATGACTTCTTTAT+GGG + chr3_4:59827841-59827860 Msa0510690:intron 30.0%
TATGGGTGTCTGTAATAATA+TGG + chr3_4:59827858-59827877 Msa0510690:intron 30.0%
ATGGGTGTCTGTAATAATAT+GGG + chr3_4:59827859-59827878 Msa0510690:intron 30.0%
CAATGCATTATTAACTCAGA+TGG + chr3_4:59827911-59827930 Msa0510690:CDS 30.0%
GTGGTTAGAATTATCACATT+TGG - chr3_4:59827954-59827973 None:intergenic 30.0%
GAATGATGAGAAAGTGATAT+AGG - chr3_4:59828005-59828024 None:intergenic 30.0%
TAGACTGATGTATAATGACA+AGG - chr3_4:59828102-59828121 None:intergenic 30.0%
!!! GTGCATTCCCTTTTTTTTTA+CGG - chr3_4:59828184-59828203 None:intergenic 30.0%
! AAAACCTTTTTCCACTAGTT+AGG + chr3_4:59828322-59828341 Msa0510690:intron 30.0%
ATGAAAATATATTGGGGAAG+TGG - chr3_4:59828389-59828408 None:intergenic 30.0%
AGACCTTAATATTTCATACC+GGG - chr3_4:59828528-59828547 None:intergenic 30.0%
!!! ACTAATTTTGAGGTACAGAT+AGG + chr3_4:59828581-59828600 Msa0510690:intron 30.0%
! TCATTTTCGAAAAAGATTCC+GGG - chr3_4:59828619-59828638 None:intergenic 30.0%
! TGTTTTGCACTAGCATAATT+TGG - chr3_4:59828745-59828764 None:intergenic 30.0%
GGAAAAAAAGATAACACTTG+TGG + chr3_4:59828853-59828872 Msa0510690:intron 30.0%
TCTTTAACCTCACAATCTTT+AGG + chr3_4:59828877-59828896 Msa0510690:intron 30.0%
CAGCAGTTATTGAGAAATAA+CGG - chr3_4:59828907-59828926 None:intergenic 30.0%
TTGATAGGATTGCAATCAAA+AGG - chr3_4:59829008-59829027 None:intergenic 30.0%
AATGATAGATACAGCAAAGA+GGG + chr3_4:59829040-59829059 Msa0510690:CDS 30.0%
TTTATCGCACTAAAATGAAG+TGG - chr3_4:59829143-59829162 None:intergenic 30.0%
ATACTAACTTACTTGATCTC+AGG + chr3_4:59829220-59829239 Msa0510690:three_prime_UTR 30.0%
TACTAACTTACTTGATCTCA+GGG + chr3_4:59829221-59829240 Msa0510690:three_prime_UTR 30.0%
GCTAAATTTGTAATTACTGG+TGG - chr3_4:59829482-59829501 None:intergenic 30.0%
!!! GGTTTTCTTTTAATTTCGGC+GGG - chr3_4:59822833-59822852 None:intergenic 35.0%
!!! GGGTTTTCTTTTAATTTCGG+CGG - chr3_4:59822834-59822853 None:intergenic 35.0%
GAAGATAAGATTAGAGAGAG+TGG - chr3_4:59823079-59823098 None:intergenic 35.0%
GATAGATTATTACCCCTCAA+CGG - chr3_4:59823214-59823233 None:intergenic 35.0%
!!! TGTGGTTTTAGTTTTGTGTG+AGG + chr3_4:59823289-59823308 Msa0510690:intron 35.0%
!!! GTGGTTTTAGTTTTGTGTGA+GGG + chr3_4:59823290-59823309 Msa0510690:intron 35.0%
!!! TGGTTTTAGTTTTGTGTGAG+GGG + chr3_4:59823291-59823310 Msa0510690:intron 35.0%
AAGAGGAGTTTGAGCTATAA+TGG + chr3_4:59823415-59823434 Msa0510690:CDS 35.0%
TGCACATTATCTGCAAGAAA+GGG - chr3_4:59823469-59823488 None:intergenic 35.0%
TTGCACATTATCTGCAAGAA+AGG - chr3_4:59823470-59823489 None:intergenic 35.0%
AGAATTTGCGTTTGTGATAC+AGG + chr3_4:59823490-59823509 Msa0510690:CDS 35.0%
CTTCTCAATTTCACGACAAA+AGG - chr3_4:59823728-59823747 None:intergenic 35.0%
TTTGACTAAATGTGGGAATC+TGG + chr3_4:59823799-59823818 Msa0510690:intron 35.0%
AAGCAAAGATATGGCAACTT+AGG - chr3_4:59824153-59824172 None:intergenic 35.0%
AATGAGCATATATGGTCCTA+TGG + chr3_4:59824186-59824205 Msa0510690:intron 35.0%
TTATCTCTCATGAGACTGTA+TGG - chr3_4:59824286-59824305 None:intergenic 35.0%
! GTAATGGGGGAAGTTTATTA+TGG - chr3_4:59824312-59824331 None:intergenic 35.0%
! TGCTTATGTGTCGTTGTAAT+GGG - chr3_4:59824327-59824346 None:intergenic 35.0%
GAAAATAGGTCAGTTATTCC+GGG - chr3_4:59824509-59824528 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr3_4:59824679-59824698 Msa0510690:intron 35.0%
CCAAAGTAGGTCAATTAAAC+CGG + chr3_4:59824692-59824711 Msa0510690:intron 35.0%
CAAAGTAGGTCAATTAAACC+GGG + chr3_4:59824693-59824712 Msa0510690:intron 35.0%
ATTCATTGAAGCTAGAAGAC+TGG - chr3_4:59824910-59824929 None:intergenic 35.0%
!! AGTCTTCTAGCTTCAATGAA+TGG + chr3_4:59824909-59824928 Msa0510690:CDS 35.0%
CTTCCTGCAAAAGAATTTGA+TGG + chr3_4:59824935-59824954 Msa0510690:CDS 35.0%
! ATGCCATCAAATTCTTTTGC+AGG - chr3_4:59824941-59824960 None:intergenic 35.0%
! CAAAAGAATTTGATGGCATG+TGG + chr3_4:59824942-59824961 Msa0510690:CDS 35.0%
ATATTAGGCTGCAAAAGCAA+TGG - chr3_4:59825057-59825076 None:intergenic 35.0%
TGCAGCCTAATATATGAATC+TGG + chr3_4:59825064-59825083 Msa0510690:intron 35.0%
! ATGAATCTGGTCTAAAGCAA+AGG + chr3_4:59825077-59825096 Msa0510690:CDS 35.0%
TGCTTTACTCTTCACTGAAA+AGG + chr3_4:59825120-59825139 Msa0510690:CDS 35.0%
! TTGATCCATTCCTTGTTTCA+TGG + chr3_4:59825146-59825165 Msa0510690:CDS 35.0%
!! TACATATCTCTAGAACTCAC+CGG - chr3_4:59825174-59825193 None:intergenic 35.0%
! TGCAGCATAATTCTTTTGCA+TGG + chr3_4:59825384-59825403 Msa0510690:intron 35.0%
CAATCAGTTTCACGTTATGT+GGG + chr3_4:59825771-59825790 Msa0510690:intron 35.0%
! ATATCAATTTGAAGCGACAC+GGG - chr3_4:59825823-59825842 None:intergenic 35.0%
! GATATCAATTTGAAGCGACA+CGG - chr3_4:59825824-59825843 None:intergenic 35.0%
ATCAAGCTTGATCAAAGGAT+TGG + chr3_4:59825841-59825860 Msa0510690:intron 35.0%
! TTGGATTGACTCAAATAGCT+AGG + chr3_4:59825860-59825879 Msa0510690:intron 35.0%
!!! ATGGGCATAACTTTTGAGTT+TGG + chr3_4:59825949-59825968 Msa0510690:intron 35.0%
!!! TGGGCATAACTTTTGAGTTT+GGG + chr3_4:59825950-59825969 Msa0510690:intron 35.0%
!! CTATTAGCTAGCATTGGTTA+AGG + chr3_4:59825992-59826011 Msa0510690:intron 35.0%
CCCATTCTACCTTTATATGA+TGG + chr3_4:59826026-59826045 Msa0510690:intron 35.0%
GTTTGAAGACACATTCTTAG+AGG + chr3_4:59826069-59826088 Msa0510690:intron 35.0%
CAGGATAAAGATGGCAAAAA+AGG - chr3_4:59826131-59826150 None:intergenic 35.0%
!!! CTTTTTTGCCATCTTTATCC+TGG + chr3_4:59826129-59826148 Msa0510690:intron 35.0%
! ATGTGTATGCTTTTGTATGG+CGG - chr3_4:59826245-59826264 None:intergenic 35.0%
AACACCATCTTCATTGTGAT+TGG + chr3_4:59826311-59826330 Msa0510690:intron 35.0%
AGTACCAATCACAATGAAGA+TGG - chr3_4:59826318-59826337 None:intergenic 35.0%
! TTTTGCAAGGCATACTGTAT+CGG + chr3_4:59826390-59826409 Msa0510690:intron 35.0%
!!! TACTGTATCGGTTTTGACAT+TGG + chr3_4:59826402-59826421 Msa0510690:intron 35.0%
GGATTTAGAGATTACTGAGT+TGG - chr3_4:59826629-59826648 None:intergenic 35.0%
ACACAATAGATTACCCATAC+AGG + chr3_4:59826733-59826752 Msa0510690:intron 35.0%
TTTCGTTATACAAGAATCCC+TGG - chr3_4:59826862-59826881 None:intergenic 35.0%
GTATCCATAGTAGGATTATG+TGG - chr3_4:59827124-59827143 None:intergenic 35.0%
ATGTTTGCAGTATCCATAGT+AGG - chr3_4:59827133-59827152 None:intergenic 35.0%
TTGTTGTGTCAAATGCGTAA+CGG + chr3_4:59827459-59827478 Msa0510690:intron 35.0%
!!! CGGTGTCTCTTTATTTTTCT+AGG + chr3_4:59827479-59827498 Msa0510690:intron 35.0%
TTTACCCGAATAGAATCAGA+AGG - chr3_4:59827713-59827732 None:intergenic 35.0%
! TTTTCAAAAAATCGTGGGGA+GGG - chr3_4:59827774-59827793 None:intergenic 35.0%
! ATTTTCAAAAAATCGTGGGG+AGG - chr3_4:59827775-59827794 None:intergenic 35.0%
! CGCATTTTCAAAAAATCGTG+GGG - chr3_4:59827778-59827797 None:intergenic 35.0%
CAGAAGTGATGACTTCTTTA+TGG + chr3_4:59827840-59827859 Msa0510690:intron 35.0%
AGAACAGCAGATAACTTACA+AGG - chr3_4:59828045-59828064 None:intergenic 35.0%
TGTTATTGTTTGTCTGATGC+TGG - chr3_4:59828253-59828272 None:intergenic 35.0%
TGTTCCTAACTAGTGGAAAA+AGG - chr3_4:59828329-59828348 None:intergenic 35.0%
!! ATTTTAGGAAGACATTGGAG+TGG - chr3_4:59828352-59828371 None:intergenic 35.0%
GCTGATATCAAAGCATATGT+TGG + chr3_4:59828485-59828504 Msa0510690:CDS 35.0%
AAGCCCGGTATGAAATATTA+AGG + chr3_4:59828522-59828541 Msa0510690:CDS 35.0%
! AATATTAAGGTCTTGTGTGC+AGG + chr3_4:59828535-59828554 Msa0510690:CDS 35.0%
! AATGGATAATCATGCTGACT+TGG + chr3_4:59828694-59828713 Msa0510690:intron 35.0%
!! ATAATCATGCTGACTTGGTT+AGG + chr3_4:59828699-59828718 Msa0510690:intron 35.0%
GTAGTAGCTTCATGAAAATC+TGG - chr3_4:59828781-59828800 None:intergenic 35.0%
GAAATTAGTTGAAACTGCAG+AGG + chr3_4:59828819-59828838 Msa0510690:CDS 35.0%
! TCTCAGAAAGCTTCCATTTT+TGG + chr3_4:59828962-59828981 Msa0510690:CDS 35.0%
CAATGATAGATACAGCAAAG+AGG + chr3_4:59829039-59829058 Msa0510690:CDS 35.0%
! TAAACTCGTTTAAGGTGCTA+AGG - chr3_4:59829275-59829294 None:intergenic 35.0%
TTAGCACCTTAAACGAGTTT+AGG + chr3_4:59829274-59829293 Msa0510690:three_prime_UTR 35.0%
ATTGAGCCTAAACTCGTTTA+AGG - chr3_4:59829283-59829302 None:intergenic 35.0%
GCATGCTTTATGAGTATAGA+CGG + chr3_4:59829372-59829391 Msa0510690:three_prime_UTR 35.0%
! TGAAGCACTTGAATTGATGA+AGG + chr3_4:59829421-59829440 Msa0510690:three_prime_UTR 35.0%
!!! ATAGCTAGCTTTTGTTCAAG+AGG + chr3_4:59829511-59829530 Msa0510690:three_prime_UTR 35.0%
!!! TAGCTAGCTTTTGTTCAAGA+GGG + chr3_4:59829512-59829531 Msa0510690:three_prime_UTR 35.0%
! AGGACATAGCTACTTTCACA+AGG + chr3_4:59822667-59822686 Msa0510690:five_prime_UTR 40.0%
ACGGTAACTTTACCAGATTG+TGG + chr3_4:59822743-59822762 Msa0510690:five_prime_UTR 40.0%
TGCTTGTACTTTCCACAATC+TGG - chr3_4:59822758-59822777 None:intergenic 40.0%
TCATCAAGTCAGTCAAGTCA+CGG + chr3_4:59822789-59822808 Msa0510690:five_prime_UTR 40.0%
!!! GGTTTTAGTTTTGTGTGAGG+GGG + chr3_4:59823292-59823311 Msa0510690:intron 40.0%
AGGAGTTTGAGCTATAATGG+TGG + chr3_4:59823418-59823437 Msa0510690:CDS 40.0%
CATTATGGAGTGGCAAGATA+TGG + chr3_4:59823576-59823595 Msa0510690:intron 40.0%
CGTATAACTCAGCCATTGTT+TGG - chr3_4:59823833-59823852 None:intergenic 40.0%
! ACTGATCAATTGCTGCTTCT+CGG + chr3_4:59823951-59823970 Msa0510690:intron 40.0%
ACCTGAAAGACATGTACTAC+AGG - chr3_4:59824070-59824089 None:intergenic 40.0%
! CTTATGTGTCGTTGTAATGG+GGG - chr3_4:59824325-59824344 None:intergenic 40.0%
! GCTTATGTGTCGTTGTAATG+GGG - chr3_4:59824326-59824345 None:intergenic 40.0%
! CTGCTTATGTGTCGTTGTAA+TGG - chr3_4:59824328-59824347 None:intergenic 40.0%
CAGAATCTGTAATCAGCTCA+TGG + chr3_4:59824345-59824364 Msa0510690:intron 40.0%
TGTAATCAGCTCATGGTAGA+AGG + chr3_4:59824352-59824371 Msa0510690:intron 40.0%
! GAAACCATTCTAGAAGCTGT+GGG - chr3_4:59824384-59824403 None:intergenic 40.0%
! AGAAACCATTCTAGAAGCTG+TGG - chr3_4:59824385-59824404 None:intergenic 40.0%
CCGGTTTAATTGACCTACTT+TGG - chr3_4:59824695-59824714 None:intergenic 40.0%
GGGATGATGTTGATGCATAA+TGG - chr3_4:59824756-59824775 None:intergenic 40.0%
! AATTTGATGGCATGTGGGAA+AGG + chr3_4:59824948-59824967 Msa0510690:CDS 40.0%
AAGCAATGGTAAATGGTGCA+GGG - chr3_4:59825043-59825062 None:intergenic 40.0%
AAAGCAATGGTAAATGGTGC+AGG - chr3_4:59825044-59825063 None:intergenic 40.0%
GCTGCAAAAGCAATGGTAAA+TGG - chr3_4:59825050-59825069 None:intergenic 40.0%
! GTCTAAAGCAAAGGTTGCTA+CGG + chr3_4:59825086-59825105 Msa0510690:CDS 40.0%
! CATTCCTTGTTTCATGGAAC+CGG + chr3_4:59825152-59825171 Msa0510690:CDS 40.0%
TGTCAATCCGATTCAATTCG+AGG + chr3_4:59825457-59825476 Msa0510690:CDS 40.0%
CAATGCACCTCGAATTGAAT+CGG - chr3_4:59825467-59825486 None:intergenic 40.0%
TCTGAGTGGGAAAAAATGGT+AGG - chr3_4:59825557-59825576 None:intergenic 40.0%
GGAATCTGAGTGGGAAAAAA+TGG - chr3_4:59825561-59825580 None:intergenic 40.0%
TGCATTCACTTCAACAAGCT+GGG - chr3_4:59825590-59825609 None:intergenic 40.0%
AGTAAATGGTTCTCCGAAAG+TGG + chr3_4:59825622-59825641 Msa0510690:CDS 40.0%
GTAAATGGTTCTCCGAAAGT+GGG + chr3_4:59825623-59825642 Msa0510690:CDS 40.0%
GCAATCAGTTTCACGTTATG+TGG + chr3_4:59825770-59825789 Msa0510690:intron 40.0%
GAAAATCCTGTTTATCCCAG+TGG + chr3_4:59825925-59825944 Msa0510690:intron 40.0%
AAAGTTATGCCCATACCACT+GGG - chr3_4:59825943-59825962 None:intergenic 40.0%
AAAAGTTATGCCCATACCAC+TGG - chr3_4:59825944-59825963 None:intergenic 40.0%
TAGAGGATTATTATGCTGGG+AGG + chr3_4:59826086-59826105 Msa0510690:intron 40.0%
TACCAAGTCCAGGATAAAGA+TGG - chr3_4:59826140-59826159 None:intergenic 40.0%
!!! TGTTTTGATTTCCTGTGGGA+GGG + chr3_4:59826183-59826202 Msa0510690:intron 40.0%
!! GGAGGGTATTCAGGAAAAAT+AGG + chr3_4:59826200-59826219 Msa0510690:intron 40.0%
! TGTGTATGCTTTTGTATGGC+GGG - chr3_4:59826244-59826263 None:intergenic 40.0%
TGATGCTGGATGGTTTCTTA+TGG + chr3_4:59826471-59826490 Msa0510690:intron 40.0%
GTACATAGGTTCAGAGTTTC+AGG - chr3_4:59826499-59826518 None:intergenic 40.0%
AAACTTAGTGGGATAGGGTT+TGG - chr3_4:59826549-59826568 None:intergenic 40.0%
AAACCCTATCCCACTAAGTT+TGG + chr3_4:59826548-59826567 Msa0510690:intron 40.0%
! TACTGAGTTGGACCGAAATA+TGG - chr3_4:59826617-59826636 None:intergenic 40.0%
AGTAGGATTATGTGGCCATT+TGG - chr3_4:59827116-59827135 None:intergenic 40.0%
ATGGCCACATAATCCTACTA+TGG + chr3_4:59827117-59827136 Msa0510690:intron 40.0%
GTATCATTTAGGTGGGCATT+TGG + chr3_4:59827256-59827275 Msa0510690:intron 40.0%
CAAGAAATGGTAGAGGAAGA+AGG + chr3_4:59827525-59827544 Msa0510690:CDS 40.0%
!!! GGTATTTGTTTTGATCGGTG+AGG + chr3_4:59827554-59827573 Msa0510690:intron 40.0%
CCGAATAGAATCAGAAGGTT+CGG - chr3_4:59827708-59827727 None:intergenic 40.0%
CCGAACCTTCTGATTCTATT+CGG + chr3_4:59827705-59827724 Msa0510690:CDS 40.0%
CGAACCTTCTGATTCTATTC+GGG + chr3_4:59827706-59827725 Msa0510690:CDS 40.0%
AGAGAGTTTATTCATGCAGG+GGG - chr3_4:59827751-59827770 None:intergenic 40.0%
GAGAGAGTTTATTCATGCAG+GGG - chr3_4:59827752-59827771 None:intergenic 40.0%
GGAGAGAGTTTATTCATGCA+GGG - chr3_4:59827753-59827772 None:intergenic 40.0%
TCCAACATTACTGCTGCTAT+CGG + chr3_4:59827975-59827994 Msa0510690:CDS 40.0%
! AGATCTAGCTTCCCTTAATG+AGG + chr3_4:59828141-59828160 Msa0510690:intron 40.0%
CAGACAAACAATAACATGCC+TGG + chr3_4:59828257-59828276 Msa0510690:intron 40.0%
AACAATAACATGCCTGGATC+TGG + chr3_4:59828263-59828282 Msa0510690:intron 40.0%
GTAAGGTTAATTCCAGATCC+AGG - chr3_4:59828278-59828297 None:intergenic 40.0%
AAGCTTCGCTTACATTAGTC+AGG - chr3_4:59829080-59829099 None:intergenic 40.0%
AAGTTAGTATTGCTAGCTCC+TGG - chr3_4:59829210-59829229 None:intergenic 40.0%
TGATCTCAGGGAGATTAAGT+TGG + chr3_4:59829233-59829252 Msa0510690:three_prime_UTR 40.0%
GATCTCAGGGAGATTAAGTT+GGG + chr3_4:59829234-59829253 Msa0510690:three_prime_UTR 40.0%
AACGAGTTTAGGCTCAATCA+TGG + chr3_4:59829285-59829304 Msa0510690:three_prime_UTR 40.0%
ACGAGTTTAGGCTCAATCAT+GGG + chr3_4:59829286-59829305 Msa0510690:three_prime_UTR 40.0%
GAGTATAGACGGTCATGTAT+TGG + chr3_4:59829383-59829402 Msa0510690:three_prime_UTR 40.0%
CATCAATTCAAGTGCTTCAC+TGG - chr3_4:59829420-59829439 None:intergenic 40.0%
GAATTGATGAAGGTGATGCA+TGG + chr3_4:59829431-59829450 Msa0510690:three_prime_UTR 40.0%
!!! AGCTAGCTTTTGTTCAAGAG+GGG + chr3_4:59829513-59829532 Msa0510690:three_prime_UTR 40.0%
TCCTCGACAAGGACAAATTG+AGG + chr3_4:59822647-59822666 Msa0510690:five_prime_UTR 45.0%
TCCTCAATTTGTCCTTGTCG+AGG - chr3_4:59822651-59822670 None:intergenic 45.0%
GAGTACTTCTCCTACTCCAA+TGG + chr3_4:59822933-59822952 Msa0510690:CDS 45.0%
TTCTCCTACTCCAATGGAGA+CGG + chr3_4:59822939-59822958 Msa0510690:CDS 45.0%
! ATTTTATCCTCCGGTGGAAG+AGG - chr3_4:59823039-59823058 None:intergenic 45.0%
! ACGAGAATTTTATCCTCCGG+TGG - chr3_4:59823045-59823064 None:intergenic 45.0%
! GGGACGAGAATTTTATCCTC+CGG - chr3_4:59823048-59823067 None:intergenic 45.0%
GAGGATAAAATTCTCGTCCC+TGG + chr3_4:59823048-59823067 Msa0510690:CDS 45.0%
!! TAGAGAGAGTGGAAGTACCA+GGG - chr3_4:59823068-59823087 None:intergenic 45.0%
!! TTAGAGAGAGTGGAAGTACC+AGG - chr3_4:59823069-59823088 None:intergenic 45.0%
TGAATTGAAGCTGTGCTGGA+AGG - chr3_4:59823177-59823196 None:intergenic 45.0%
ATCGTGAATTGAAGCTGTGC+TGG - chr3_4:59823181-59823200 None:intergenic 45.0%
AGATTATTACCCCTCAACGG+CGG - chr3_4:59823211-59823230 None:intergenic 45.0%
! GTTTTGTGTGAGGGGGTAAT+TGG + chr3_4:59823299-59823318 Msa0510690:intron 45.0%
TGCAAGAAAGGGTTCGTCAA+GGG - chr3_4:59823458-59823477 None:intergenic 45.0%
!! TTTCACGACAAAAGGGCATC+TGG - chr3_4:59823720-59823739 None:intergenic 45.0%
CTGGCTGTGTAACCAAACAA+TGG + chr3_4:59823818-59823837 Msa0510690:intron 45.0%
GCCTGTAGTACATGTCTTTC+AGG + chr3_4:59824066-59824085 Msa0510690:CDS 45.0%
! GCTTCAATTGGTTCATCTGC+TGG + chr3_4:59824245-59824264 Msa0510690:intron 45.0%
ATAGGTCAGTTATTCCGGGA+CGG - chr3_4:59824505-59824524 None:intergenic 45.0%
GTAGGTCAATTAAACCGGGA+CGG + chr3_4:59824697-59824716 Msa0510690:intron 45.0%
CTTTGACAGCTTAGCGAAGA+AGG + chr3_4:59824857-59824876 Msa0510690:intron 45.0%
TCAGAGCTGATATCCTCACA+CGG - chr3_4:59824884-59824903 None:intergenic 45.0%
! TGTGAGGATATCAGCTCTGA+TGG + chr3_4:59824884-59824903 Msa0510690:CDS 45.0%
CGGTTCCATGAAACAAGGAA+TGG - chr3_4:59825154-59825173 None:intergenic 45.0%
GTGCATTCACTTCAACAAGC+TGG - chr3_4:59825591-59825610 None:intergenic 45.0%
GCATACCAACTTCCCACTTT+CGG - chr3_4:59825638-59825657 None:intergenic 45.0%
AGTTTCACGTTATGTGGGCT+GGG + chr3_4:59825776-59825795 Msa0510690:intron 45.0%
AGCTAGGAAAACCCACTGTT+TGG + chr3_4:59825876-59825895 Msa0510690:intron 45.0%
TCCTGTTTATCCCAGTGGTA+TGG + chr3_4:59825930-59825949 Msa0510690:intron 45.0%
CCTGTTTATCCCAGTGGTAT+GGG + chr3_4:59825931-59825950 Msa0510690:intron 45.0%
TGCCATCTTTATCCTGGACT+TGG + chr3_4:59826135-59826154 Msa0510690:intron 45.0%
!!! GTGTTTTGATTTCCTGTGGG+AGG + chr3_4:59826182-59826201 Msa0510690:intron 45.0%
GCTTAAGCAGAAGATGATGC+TGG + chr3_4:59826457-59826476 Msa0510690:intron 45.0%
AAGCAGAAGATGATGCTGGA+TGG + chr3_4:59826461-59826480 Msa0510690:intron 45.0%
CGACCAAACTTAGTGGGATA+GGG - chr3_4:59826554-59826573 None:intergenic 45.0%
CCTATCCCACTAAGTTTGGT+CGG + chr3_4:59826552-59826571 Msa0510690:intron 45.0%
CTATCCCACTAAGTTTGGTC+GGG + chr3_4:59826553-59826572 Msa0510690:intron 45.0%
TGTACCCGACCAAACTTAGT+GGG - chr3_4:59826560-59826579 None:intergenic 45.0%
ATGTACCCGACCAAACTTAG+TGG - chr3_4:59826561-59826580 None:intergenic 45.0%
ACTAAGTTTGGTCGGGTACA+TGG + chr3_4:59826560-59826579 Msa0510690:intron 45.0%
TAGTATGGTAGTAGAGGCAG+AGG - chr3_4:59826688-59826707 None:intergenic 45.0%
ACAAAACTCCCACCATGACT+AGG + chr3_4:59826811-59826830 Msa0510690:intron 45.0%
GGAATTGACCTAGTCATGGT+GGG - chr3_4:59826822-59826841 None:intergenic 45.0%
TGGAATTGACCTAGTCATGG+TGG - chr3_4:59826823-59826842 None:intergenic 45.0%
GGTTGGAATTGACCTAGTCA+TGG - chr3_4:59826826-59826845 None:intergenic 45.0%
AACCATTGAACCAACCACCA+GGG + chr3_4:59826842-59826861 Msa0510690:intron 45.0%
ATACAAGAATCCCTGGTGGT+TGG - chr3_4:59826855-59826874 None:intergenic 45.0%
CGTTATACAAGAATCCCTGG+TGG - chr3_4:59826859-59826878 None:intergenic 45.0%
!!! TGTAGTCTGCCATTTTTCCC+TGG + chr3_4:59827158-59827177 Msa0510690:intron 45.0%
! GCTAGAAAAGCTGCTTTGTC+TGG + chr3_4:59827680-59827699 Msa0510690:CDS 45.0%
GGGAGAGAGTTTATTCATGC+AGG - chr3_4:59827754-59827773 None:intergenic 45.0%
AGCAGCAGTAATGTTGGATG+TGG - chr3_4:59827973-59827992 None:intergenic 45.0%
ACCGATAGCAGCAGTAATGT+TGG - chr3_4:59827979-59827998 None:intergenic 45.0%
TGCAGGAACTTATGCGTACA+GGG + chr3_4:59828552-59828571 Msa0510690:CDS 45.0%
GATAGGTCTCAATCTTCTCC+CGG + chr3_4:59828598-59828617 Msa0510690:intron 45.0%
CGGTTGACCTAAAGATTGTG+AGG - chr3_4:59828887-59828906 None:intergenic 45.0%
CTGTGTTTGATCTGTCCACA+GGG + chr3_4:59828924-59828943 Msa0510690:intron 45.0%
AGTGCAGCATGTGCCAAAAA+TGG - chr3_4:59828978-59828997 None:intergenic 45.0%
AAAACAAGTCCCAAGACTCC+GGG - chr3_4:59829320-59829339 None:intergenic 45.0%
GAAAACAAGTCCCAAGACTC+CGG - chr3_4:59829321-59829340 None:intergenic 45.0%
CAAGTGCTTCACTGGCAATA+TGG - chr3_4:59829412-59829431 None:intergenic 45.0%
ATTACTGGTGGCCTATTCTC+TGG - chr3_4:59829470-59829489 None:intergenic 45.0%
GAGTAGTCTCATCCTCGACA+AGG + chr3_4:59822636-59822655 Msa0510690:five_prime_UTR 50.0%
GAACGAAGGGGGTAAGAAAG+AGG - chr3_4:59822874-59822893 None:intergenic 50.0%
GATGCTTGCGAGTTGCAACT+GGG - chr3_4:59822908-59822927 None:intergenic 50.0%
TGATGCTTGCGAGTTGCAAC+TGG - chr3_4:59822909-59822928 None:intergenic 50.0%
AACCCTACGACCGACCAAAA+CGG + chr3_4:59822967-59822986 Msa0510690:CDS 50.0%
AGGTGAACGTTGGGAAGCTA+CGG - chr3_4:59822995-59823014 None:intergenic 50.0%
TGGTGGTAGAGGTGAACGTT+GGG - chr3_4:59823004-59823023 None:intergenic 50.0%
ATGGTGGTAGAGGTGAACGT+TGG - chr3_4:59823005-59823024 None:intergenic 50.0%
! CTATCGGGTTCTGTGTTGCT+TGG + chr3_4:59823351-59823370 Msa0510690:intron 50.0%
AAAGGGTTCGTCAAGGGGAA+CGG - chr3_4:59823452-59823471 None:intergenic 50.0%
GCAAGAAAGGGTTCGTCAAG+GGG - chr3_4:59823457-59823476 None:intergenic 50.0%
CTGCAAGAAAGGGTTCGTCA+AGG - chr3_4:59823459-59823478 None:intergenic 50.0%
GGAGTGGCAAGATATGGAAG+TGG + chr3_4:59823582-59823601 Msa0510690:intron 50.0%
! CTGACCCACAGCTTCTAGAA+TGG + chr3_4:59824377-59824396 Msa0510690:intron 50.0%
TTACAATACTCCCTCCGTCC+CGG + chr3_4:59824488-59824507 Msa0510690:intron 50.0%
GTCAATTAAACCGGGACGGA+GGG + chr3_4:59824701-59824720 Msa0510690:intron 50.0%
TTAACATACTCCCTCCGTCC+CGG - chr3_4:59824714-59824733 None:intergenic 50.0%
!! CTCACCGGTTCCATGAAACA+AGG - chr3_4:59825159-59825178 None:intergenic 50.0%
! ATTCTTTTGCATGGACCCCC+TGG + chr3_4:59825393-59825412 Msa0510690:CDS 50.0%
! TTCTTTTGCATGGACCCCCT+GGG + chr3_4:59825394-59825413 Msa0510690:CDS 50.0%
AAGACGTCTTTCCAGTCCCA+GGG - chr3_4:59825413-59825432 None:intergenic 50.0%
AAAGACGTCTTTCCAGTCCC+AGG - chr3_4:59825414-59825433 None:intergenic 50.0%
TTTCCCACTCAGATTCCCAC+AGG + chr3_4:59825564-59825583 Msa0510690:intron 50.0%
GTTCTCCGAAAGTGGGAAGT+TGG + chr3_4:59825630-59825649 Msa0510690:CDS 50.0%
CAGTTTCACGTTATGTGGGC+TGG + chr3_4:59825775-59825794 Msa0510690:intron 50.0%
! GTTTCACGTTATGTGGGCTG+GGG + chr3_4:59825777-59825796 Msa0510690:intron 50.0%
!! TTTCACGTTATGTGGGCTGG+GGG + chr3_4:59825778-59825797 Msa0510690:intron 50.0%
CCCATACCACTGGGATAAAC+AGG - chr3_4:59825934-59825953 None:intergenic 50.0%
CGGACAATACTACCAAGTCC+AGG - chr3_4:59826150-59826169 None:intergenic 50.0%
!! TTTCCTGTGGGAGGGTATTC+AGG + chr3_4:59826191-59826210 Msa0510690:intron 50.0%
TTTCCTGAATACCCTCCCAC+AGG - chr3_4:59826197-59826216 None:intergenic 50.0%
CCGACCAAACTTAGTGGGAT+AGG - chr3_4:59826555-59826574 None:intergenic 50.0%
! CTGGTGGTTGGTTCAATGGT+TGG - chr3_4:59826843-59826862 None:intergenic 50.0%
CAACCATTGAACCAACCACC+AGG + chr3_4:59826841-59826860 Msa0510690:intron 50.0%
! ATCCCTGGTGGTTGGTTCAA+TGG - chr3_4:59826847-59826866 None:intergenic 50.0%
TCAAGAGGATGCCACATGTC+AGG + chr3_4:59826985-59827004 Msa0510690:intron 50.0%
CAAGAGGATGCCACATGTCA+GGG + chr3_4:59826986-59827005 Msa0510690:intron 50.0%
GGTAGAGGAAGAAGGCAATC+TGG + chr3_4:59827533-59827552 Msa0510690:CDS 50.0%
AGGCTTTCGACTTCATCTGC+AGG - chr3_4:59827653-59827672 None:intergenic 50.0%
!! CAGCTTTTCTAGCAGCAGCA+AGG - chr3_4:59827673-59827692 None:intergenic 50.0%
GGAGTGGTGTTCCTAACTAG+TGG - chr3_4:59828336-59828355 None:intergenic 50.0%
TCATACCGGGCTTGAAGAGT+TGG - chr3_4:59828515-59828534 None:intergenic 50.0%
GTGCAGGAACTTATGCGTAC+AGG + chr3_4:59828551-59828570 Msa0510690:CDS 50.0%
! TGAAACTGCAGAGGCATGTG+AGG + chr3_4:59828828-59828847 Msa0510690:CDS 50.0%
GCTGTGTTTGATCTGTCCAC+AGG + chr3_4:59828923-59828942 Msa0510690:intron 50.0%
ATCTGTCCACAGGGAATGAG+TGG + chr3_4:59828933-59828952 Msa0510690:intron 50.0%
CAATCATGGGATCAGTGTCC+CGG + chr3_4:59829299-59829318 Msa0510690:three_prime_UTR 50.0%
TGGGTCTGTGAGAACGAAGG+GGG - chr3_4:59822885-59822904 None:intergenic 55.0%
GTGGGTCTGTGAGAACGAAG+GGG - chr3_4:59822886-59822905 None:intergenic 55.0%
GGTGGGTCTGTGAGAACGAA+GGG - chr3_4:59822887-59822906 None:intergenic 55.0%
CTTGCGAGTTGCAACTGGGT+GGG - chr3_4:59822904-59822923 None:intergenic 55.0%
TGCTCCGTCTCCATTGGAGT+AGG - chr3_4:59822946-59822965 None:intergenic 55.0%
! GGGTTTTGCTCCGTCTCCAT+TGG - chr3_4:59822952-59822971 None:intergenic 55.0%
TTATCCTCCGGTGGAAGAGG+AGG - chr3_4:59823036-59823055 None:intergenic 55.0%
ATTACCCCTCAACGGCGGAA+CGG - chr3_4:59823206-59823225 None:intergenic 55.0%
TCGTCAAGGGGAACGGGAAT+CGG - chr3_4:59823445-59823464 None:intergenic 55.0%
AAGGGTTCGTCAAGGGGAAC+GGG - chr3_4:59823451-59823470 None:intergenic 55.0%
!! CAAAAGGGCATCTGGACGTG+CGG - chr3_4:59823712-59823731 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr3_4:59824501-59824520 None:intergenic 55.0%
GGTCAATTAAACCGGGACGG+AGG + chr3_4:59824700-59824719 Msa0510690:intron 55.0%
TAGCGAAGAAGGACCGTGTG+AGG + chr3_4:59824868-59824887 Msa0510690:CDS 55.0%
AGACGTCTTTCCAGTCCCAG+GGG - chr3_4:59825412-59825431 None:intergenic 55.0%
CTTCAACAAGCTGGGCCTGT+GGG - chr3_4:59825582-59825601 None:intergenic 55.0%
ACTTCAACAAGCTGGGCCTG+TGG - chr3_4:59825583-59825602 None:intergenic 55.0%
!! GGTGGGAGTTTTGTAGCACC+TGG - chr3_4:59826805-59826824 None:intergenic 55.0%
ATCAACCGTGCCCTGACATG+TGG - chr3_4:59826999-59827018 None:intergenic 55.0%
! ACCGGGCTTGAAGAGTTGGT+GGG - chr3_4:59828511-59828530 None:intergenic 55.0%
TACCGGGCTTGAAGAGTTGG+TGG - chr3_4:59828512-59828531 None:intergenic 55.0%
! ACTGCAGAGGCATGTGAGGT+AGG + chr3_4:59828832-59828851 Msa0510690:intron 55.0%
GTCCACAGGGAATGAGTGGA+AGG + chr3_4:59828937-59828956 Msa0510690:intron 55.0%
GACCTTCCACTCATTCCCTG+TGG - chr3_4:59828942-59828961 None:intergenic 55.0%
GATCAGTGTCCCGGAGTCTT+GGG + chr3_4:59829308-59829327 Msa0510690:three_prime_UTR 55.0%
GGGTGGGTCTGTGAGAACGA+AGG - chr3_4:59822888-59822907 None:intergenic 60.0%
GCTTGCGAGTTGCAACTGGG+TGG - chr3_4:59822905-59822924 None:intergenic 60.0%
!! CGCCGTTTTGGTCGGTCGTA+GGG - chr3_4:59822972-59822991 None:intergenic 60.0%
!! AGCTACGGCGCCGTTTTGGT+CGG - chr3_4:59822980-59822999 None:intergenic 60.0%
GATGTCCGTTCCGCCGTTGA+GGG + chr3_4:59823198-59823217 Msa0510690:CDS 60.0%
ATGTCCGTTCCGCCGTTGAG+GGG + chr3_4:59823199-59823218 Msa0510690:CDS 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr3_4:59824502-59824521 None:intergenic 60.0%
GACGTCTTTCCAGTCCCAGG+GGG - chr3_4:59825411-59825430 None:intergenic 60.0%
GGGCCTGTGGGAATCTGAGT+GGG - chr3_4:59825570-59825589 None:intergenic 60.0%
TGGGCCTGTGGGAATCTGAG+TGG - chr3_4:59825571-59825590 None:intergenic 60.0%
GGATGCCACATGTCAGGGCA+CGG + chr3_4:59826991-59827010 Msa0510690:intron 60.0%
! TTCATGCAGGGGGCGCAGAA+AGG - chr3_4:59827741-59827760 None:intergenic 60.0%
GCCCACCAACTCTTCAAGCC+CGG + chr3_4:59828507-59828526 Msa0510690:CDS 60.0%
GGATCAGTGTCCCGGAGTCT+TGG + chr3_4:59829307-59829326 Msa0510690:three_prime_UTR 60.0%
!! GCGCCGTTTTGGTCGGTCGT+AGG - chr3_4:59822973-59822992 None:intergenic 65.0%
! GGGAAGCTACGGCGCCGTTT+TGG - chr3_4:59822984-59823003 None:intergenic 65.0%
! GGAGGGGGAGATGGTGGTAG+AGG - chr3_4:59823015-59823034 None:intergenic 65.0%
AGAGGAGGAGGGGGAGATGG+TGG - chr3_4:59823021-59823040 None:intergenic 65.0%
GGAAGAGGAGGAGGGGGAGA+TGG - chr3_4:59823024-59823043 None:intergenic 65.0%
TCCCCCTCCTCCTCTTCCAC+CGG + chr3_4:59823026-59823045 Msa0510690:CDS 65.0%
TCCGGTGGAAGAGGAGGAGG+GGG - chr3_4:59823030-59823049 None:intergenic 65.0%
CTCCGGTGGAAGAGGAGGAG+GGG - chr3_4:59823031-59823050 None:intergenic 65.0%
CCTCCGGTGGAAGAGGAGGA+GGG - chr3_4:59823032-59823051 None:intergenic 65.0%
TCCTCCGGTGGAAGAGGAGG+AGG - chr3_4:59823033-59823052 None:intergenic 65.0%
CGATGTCCGTTCCGCCGTTG+AGG + chr3_4:59823197-59823216 Msa0510690:CDS 65.0%
TTGCATGGACCCCCTGGGAC+TGG + chr3_4:59825399-59825418 Msa0510690:CDS 65.0%
! ATGCAGGGGGCGCAGAAAGG+AGG - chr3_4:59827738-59827757 None:intergenic 65.0%
CCCTCCTCCTCTTCCACCGG+AGG + chr3_4:59823029-59823048 Msa0510690:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 59822608 59829552 59822608 ID=Msa0510690;Name=Msa0510690
chr3_4 mRNA 59822608 59829552 59822608 ID=Msa0510690-mRNA-1;Parent=Msa0510690;Name=Msa0510690-mRNA-1;_AED=0.09;_eAED=0.09;_QI=323|1|1|1|0.92|0.86|15|352|460
chr3_4 exon 59822608 59823069 59822608 ID=Msa0510690-mRNA-1:exon:14171;Parent=Msa0510690-mRNA-1
chr3_4 exon 59823157 59823220 59823157 ID=Msa0510690-mRNA-1:exon:14172;Parent=Msa0510690-mRNA-1
chr3_4 exon 59823405 59823511 59823405 ID=Msa0510690-mRNA-1:exon:14173;Parent=Msa0510690-mRNA-1
chr3_4 exon 59824020 59824087 59824020 ID=Msa0510690-mRNA-1:exon:14174;Parent=Msa0510690-mRNA-1
chr3_4 exon 59824866 59824969 59824866 ID=Msa0510690-mRNA-1:exon:14175;Parent=Msa0510690-mRNA-1
chr3_4 exon 59825069 59825173 59825069 ID=Msa0510690-mRNA-1:exon:14176;Parent=Msa0510690-mRNA-1
chr3_4 exon 59825389 59825478 59825389 ID=Msa0510690-mRNA-1:exon:14177;Parent=Msa0510690-mRNA-1
chr3_4 exon 59825576 59825651 59825576 ID=Msa0510690-mRNA-1:exon:14178;Parent=Msa0510690-mRNA-1
chr3_4 exon 59827501 59827570 59827501 ID=Msa0510690-mRNA-1:exon:14179;Parent=Msa0510690-mRNA-1
chr3_4 exon 59827657 59827727 59827657 ID=Msa0510690-mRNA-1:exon:14180;Parent=Msa0510690-mRNA-1
chr3_4 exon 59827906 59827996 59827906 ID=Msa0510690-mRNA-1:exon:14181;Parent=Msa0510690-mRNA-1
chr3_4 exon 59828465 59828592 59828465 ID=Msa0510690-mRNA-1:exon:14182;Parent=Msa0510690-mRNA-1
chr3_4 exon 59828721 59828849 59828721 ID=Msa0510690-mRNA-1:exon:14183;Parent=Msa0510690-mRNA-1
chr3_4 exon 59828945 59829086 59828945 ID=Msa0510690-mRNA-1:exon:14184;Parent=Msa0510690-mRNA-1
chr3_4 exon 59829202 59829552 59829202 ID=Msa0510690-mRNA-1:exon:14185;Parent=Msa0510690-mRNA-1
chr3_4 five_prime_UTR 59822608 59822930 59822608 ID=Msa0510690-mRNA-1:five_prime_utr;Parent=Msa0510690-mRNA-1
chr3_4 CDS 59822931 59823069 59822931 ID=Msa0510690-mRNA-1:cds;Parent=Msa0510690-mRNA-1
chr3_4 CDS 59823157 59823220 59823157 ID=Msa0510690-mRNA-1:cds;Parent=Msa0510690-mRNA-1
chr3_4 CDS 59823405 59823511 59823405 ID=Msa0510690-mRNA-1:cds;Parent=Msa0510690-mRNA-1
chr3_4 CDS 59824020 59824087 59824020 ID=Msa0510690-mRNA-1:cds;Parent=Msa0510690-mRNA-1
chr3_4 CDS 59824866 59824969 59824866 ID=Msa0510690-mRNA-1:cds;Parent=Msa0510690-mRNA-1
chr3_4 CDS 59825069 59825173 59825069 ID=Msa0510690-mRNA-1:cds;Parent=Msa0510690-mRNA-1
chr3_4 CDS 59825389 59825478 59825389 ID=Msa0510690-mRNA-1:cds;Parent=Msa0510690-mRNA-1
chr3_4 CDS 59825576 59825651 59825576 ID=Msa0510690-mRNA-1:cds;Parent=Msa0510690-mRNA-1
chr3_4 CDS 59827501 59827570 59827501 ID=Msa0510690-mRNA-1:cds;Parent=Msa0510690-mRNA-1
chr3_4 CDS 59827657 59827727 59827657 ID=Msa0510690-mRNA-1:cds;Parent=Msa0510690-mRNA-1
chr3_4 CDS 59827906 59827996 59827906 ID=Msa0510690-mRNA-1:cds;Parent=Msa0510690-mRNA-1
chr3_4 CDS 59828465 59828592 59828465 ID=Msa0510690-mRNA-1:cds;Parent=Msa0510690-mRNA-1
chr3_4 CDS 59828721 59828849 59828721 ID=Msa0510690-mRNA-1:cds;Parent=Msa0510690-mRNA-1
chr3_4 CDS 59828945 59829085 59828945 ID=Msa0510690-mRNA-1:cds;Parent=Msa0510690-mRNA-1
chr3_4 three_prime_UTR 59829086 59829086 59829086 ID=Msa0510690-mRNA-1:three_prime_utr;Parent=Msa0510690-mRNA-1
chr3_4 three_prime_UTR 59829202 59829552 59829202 ID=Msa0510690-mRNA-1:three_prime_utr;Parent=Msa0510690-mRNA-1
Gene Sequence

>Msa0510690

ATGAGTACTTCTCCTACTCCAATGGAGACGGAGCAAAACCCTACGACCGACCAAAACGGCGCCGTAGCTTCCCAACGTTCACCTCTACCACCATCTCCCCCTCCTCCTCTTCCACCGGAGGATAAAATTCTCGTCCCTGTCGAGGTTTGCTTAAAACCTTCCAGCACAGCTTCAATTCACGATGTCCGTTCCGCCGTTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATAATGGTGGACCGATTCCCGTTCCCCTTGACGAACCCTTTCTTGCAGATAATGTGCAAAGAATTTGCGTTTGTGATACAGGTGAAGGGATGCAGAATGATAACGTTCTTTTGTTCTGGCAAGTCAAGCCTGTAGTACATGTCTTTCAGCTTAGCGAAGAAGGACCGTGTGAGGATATCAGCTCTGATGGCCAGTCTTCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCCTAATATATGAATCTGGTCTAAAGCAAAGGTTGCTACGGTATGCAGCAAGTGCTTTACTCTTCACTGAAAAGGCAGTTGATCCATTCCTTGTTTCATGGAACCGCATAATTCTTTTGCATGGACCCCCTGGGACTGGAAAGACGTCTTTATGTAAAGCATTAGCTCAGAAACTGTCAATCCGATTCAATTCGAGATTCCCACAGGCCCAGCTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGGAAGTTGGTAGCAAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAGGCAATCTGGTATTTGTTTTGATCGATGAAGTCGAAAGCCTTGCTGCTGCTAGAAAAGCTGCTTTGTCTGGTTCCGAACCTTCTGATTCTATTCGGGTTGTCAATGCATTATTAACTCAGATGGATAAGTTAAAATCATCTCCAAATGTGATAATTCTAACCACATCCAACATTACTGCTGCTATCGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGCCCACCAACTCTTCAAGCCCGGTATGAAATATTAAGGTCTTGTGTGCAGGAACTTATGCGTACAGGGATATTAACTAATTTTGAGGATTGTAAGAATATCGTGCTTCCAAATTATGCTAGTGCAAAACAGAGAACGAACGCACCAGATTTTCATGAAGCTACTACATTCATGCAACTGTGCAAGAAATTAGTTGAAACTGCAGAGGCATGTGAGGGAATGAGTGGAAGGTCTCTCAGAAAGCTTCCATTTTTGGCACATGCTGCACTTGCAAATCCTTTTGATTGCAATCCTATCAAGTTCTTATGTACAATGATAGATACAGCAAAGAGGGAGCGTTCTGAGCTTCCTGACTAA
Protein sequence

>Msa0510690

MSTSPTPMETEQNPTTDQNGAVASQRSPLPPSPPPPLPPEDKILVPVEVCLKPSSTASIHDVRSAVEGMLEKRSLSYNGGPIPVPLDEPFLADNVQRICVCDTGEGMQNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKAVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRFPQAQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEEGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCVQELMRTGILTNFEDCKNIVLPNYASAKQRTNAPDFHEATTFMQLCKKLVETAEACEGMSGRSLRKLPFLAHAALANPFDCNPIKFLCTMIDTAKRERSELPD*