AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1390500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1390500 MtrunA17_Chr3g0116941 99.346 459 3 0 2 460 3 461 0.0 940
Msa1390500 MtrunA17_Chr7g0255651 30.890 191 107 6 173 361 305 472 2.38e-19 90.9
Msa1390500 MtrunA17_Chr7g0255641 32.673 202 111 6 159 355 660 841 1.28e-17 85.9
Msa1390500 MtrunA17_Chr7g0255641 26.000 200 126 5 180 377 415 594 9.83e-11 64.3
Msa1390500 MtrunA17_Chr4g0026631 35.404 161 86 5 196 355 164 307 2.73e-17 84.0
Msa1390500 MtrunA17_Chr2g0321241 34.161 161 88 4 196 355 169 312 2.95e-17 84.0
Msa1390500 MtrunA17_Chr4g0038101 35.000 160 85 4 198 355 762 904 4.75e-16 81.3
Msa1390500 MtrunA17_Chr2g0327121 28.431 204 128 5 159 360 482 669 4.86e-16 80.9
Msa1390500 MtrunA17_Chr7g0264521 28.780 205 126 6 159 360 481 668 1.68e-15 79.3
Msa1390500 MtrunA17_Chr1g0180791 29.268 205 125 6 159 360 480 667 4.64e-15 77.8
Msa1390500 MtrunA17_Chr7g0255721 31.707 205 107 7 159 354 687 867 9.79e-15 77.0
Msa1390500 MtrunA17_Chr4g0052271 31.401 207 115 8 159 362 121 303 1.53e-14 75.1
Msa1390500 MtrunA17_Chr7g0255691 33.951 162 90 4 196 355 324 470 2.30e-14 75.5
Msa1390500 MtrunA17_Chr4g0004121 28.926 242 132 8 136 355 206 429 1.45e-13 72.8
Msa1390500 MtrunA17_Chr4g0050561 30.000 170 101 4 198 363 196 351 1.62e-13 72.0
Msa1390500 MtrunA17_Chr6g0462581 30.909 165 95 4 196 358 538 685 2.09e-13 72.8
Msa1390500 MtrunA17_Chr2g0327231 28.652 178 111 4 159 336 348 509 3.57e-13 71.6
Msa1390500 MtrunA17_Chr1g0204031 32.716 162 88 5 198 356 598 741 6.24e-13 71.2
Msa1390500 MtrunA17_Chr8g0387641 29.697 165 97 4 196 358 559 706 7.14e-13 70.9
Msa1390500 MtrunA17_Chr5g0397121 30.303 165 96 4 196 358 551 698 1.52e-12 70.1
Msa1390500 MtrunA17_Chr7g0217421 30.000 160 95 4 198 355 78 222 2.12e-12 68.6
Msa1390500 MtrunA17_Chr2g0289231 27.108 166 104 3 196 361 343 491 2.16e-12 69.3
Msa1390500 MtrunA17_Chr3g0127431 28.426 197 115 5 168 359 95 270 4.80e-12 67.4
Msa1390500 MtrunA17_Chr7g0255901 35.570 149 77 5 198 343 678 810 2.11e-11 66.2
Msa1390500 MtrunA17_Chr1g0202381 30.675 163 94 4 198 358 509 654 2.43e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1390500 AT4G24710.3 75.581 430 104 1 31 460 51 479 0.0 677
Msa1390500 AT4G24710.1 75.581 430 104 1 31 460 39 467 0.0 676
Msa1390500 AT4G24710.4 81.788 302 54 1 31 332 51 351 1.27e-177 501
Msa1390500 AT4G24710.2 81.788 302 54 1 31 332 51 351 1.27e-177 501
Msa1390500 AT3G53230.1 28.922 204 127 5 159 360 480 667 5.58e-17 84.3
Msa1390500 AT2G27600.1 34.783 161 87 5 196 355 166 309 1.59e-16 82.0
Msa1390500 AT5G03340.1 28.431 204 128 5 159 360 479 666 3.30e-15 79.0
Msa1390500 AT3G19740.1 33.750 160 87 4 198 355 742 884 7.82e-15 77.8
Msa1390500 AT3G56690.1 30.734 218 124 7 143 355 709 904 8.56e-15 77.8
Msa1390500 AT1G50140.2 33.125 160 88 4 198 355 730 872 1.29e-14 77.0
Msa1390500 AT1G50140.5 33.125 160 88 4 198 355 730 872 1.29e-14 77.0
Msa1390500 AT1G50140.3 33.125 160 88 4 198 355 752 894 1.39e-14 77.0
Msa1390500 AT1G50140.1 33.125 160 88 4 198 355 752 894 1.39e-14 77.0
Msa1390500 AT1G50140.4 33.125 160 88 4 198 355 752 894 1.39e-14 77.0
Msa1390500 AT5G52882.1 26.840 231 112 6 196 424 552 727 1.41e-14 76.6
Msa1390500 AT4G04180.2 26.522 230 110 7 196 424 357 528 1.99e-14 75.9
Msa1390500 AT4G04180.1 26.522 230 110 7 196 424 362 533 2.21e-14 75.9
Msa1390500 AT5G20000.1 30.000 170 101 4 198 363 198 353 5.40e-14 73.9
Msa1390500 AT5G19990.1 30.000 170 101 4 198 363 198 353 5.60e-14 73.9
Msa1390500 AT5G19990.3 30.000 170 101 4 198 363 198 353 5.60e-14 73.9
Msa1390500 AT5G19990.2 30.000 170 101 4 198 363 140 295 6.23e-14 73.6
Msa1390500 AT3G09840.1 29.143 175 108 3 188 360 507 667 7.96e-14 74.3
Msa1390500 AT2G03670.1 29.612 206 114 6 159 355 285 468 1.02e-13 73.9
Msa1390500 AT2G03670.1 31.176 170 95 6 192 355 53 206 4.31e-12 68.6
Msa1390500 AT4G28000.2 29.697 165 97 4 196 358 555 702 4.80e-13 72.0
Msa1390500 AT4G28000.1 29.697 165 97 4 196 358 553 700 4.84e-13 72.0
Msa1390500 AT1G64110.5 29.697 165 97 4 196 358 554 701 5.18e-13 72.0
Msa1390500 AT1G64110.3 29.697 165 97 4 196 358 554 701 5.18e-13 72.0
Msa1390500 AT1G64110.1 29.697 165 97 4 196 358 551 698 5.31e-13 72.0
Msa1390500 AT1G64110.2 29.697 165 97 4 196 358 556 703 5.42e-13 71.6
Msa1390500 AT1G64110.4 29.697 165 97 4 196 358 556 703 5.42e-13 71.6
Msa1390500 AT4G28000.3 29.697 165 97 4 196 358 555 702 5.98e-13 71.6
Msa1390500 AT2G03670.2 31.176 170 95 6 192 355 53 206 3.22e-12 68.6
Msa1390500 AT4G04910.1 26.455 189 124 5 172 355 227 405 7.07e-12 68.2
Msa1390500 AT5G53540.1 29.091 165 95 4 198 359 125 270 1.62e-11 66.2
Msa1390500 AT3G15120.2 31.220 205 124 8 152 354 722 911 5.40e-11 65.9
Msa1390500 AT3G15120.1 31.220 205 124 8 152 354 712 901 5.54e-11 65.9
Msa1390500 AT1G03000.1 35.570 149 77 5 198 343 694 826 9.42e-11 64.7

Find 158 sgRNAs with CRISPR-Local

Find 474 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACCATTTCTTGAATCTTT+TGG 0.163133 tig0021354:-44298 None:intergenic
CACATTCTTTGTTCAGTAAA+TGG 0.170120 tig0021354:+42394 Msa1390500:CDS
GCCTGTAGTACATGTCTTTC+AGG 0.195452 tig0021354:+41082 Msa1390500:CDS
AATGCTAAATTTGTAATTAC+TGG 0.240772 tig0021354:-46265 None:intergenic
TTAGACCAGATTCATATATT+AGG 0.259717 tig0021354:-41855 None:intergenic
TAATTACAAATTTAGCATTA+TGG 0.271118 tig0021354:+46269 Msa1390500:three_prime_UTR
ACGGTGACTTTACCAGATTT+TGG 0.292494 tig0021354:+39784 Msa1390500:five_prime_UTR
CCGAACCTTCTGATTCTATT+CGG 0.296498 tig0021354:+44488 Msa1390500:CDS
CACTTGTACTTTCCAAAATC+TGG 0.313473 tig0021354:-39796 None:intergenic
GTGGTTAGAATTATCACATT+TGG 0.315571 tig0021354:-44734 None:intergenic
CTTCCTGCAAAAGAATTTGA+TGG 0.316919 tig0021354:+41721 Msa1390500:CDS
GATCAGTGTCCCGGAGTCTT+AGG 0.326684 tig0021354:+46091 Msa1390500:three_prime_UTR
TGATGCTTGCGAGTTGCAAC+TGG 0.326910 tig0021354:-39935 None:intergenic
CGAACCTTCTGATTCTATTC+GGG 0.329197 tig0021354:+44489 Msa1390500:CDS
GGGAAGCTACGGCGCCGTTT+TGG 0.331773 tig0021354:-40010 None:intergenic
ATCCCACAACAAGGACAAAC+TGG 0.334954 tig0021354:+39686 Msa1390500:five_prime_UTR
TTGATCCATTCCTTGTTTCA+TGG 0.336034 tig0021354:+41932 Msa1390500:CDS
AGAATTTGCGTTTGTGATAC+AGG 0.336533 tig0021354:+40519 Msa1390500:CDS
CAAGTGCTTCACTGGCAATA+TGG 0.360508 tig0021354:-46192 None:intergenic
CATTCCTTGTTTCATGGAAC+CGG 0.365098 tig0021354:+41938 Msa1390500:CDS
CCCCAGTTTGTCCTTGTTGT+GGG 0.366405 tig0021354:-39688 None:intergenic
CATCAATTCAAGTGCTTCAC+TGG 0.370076 tig0021354:-46200 None:intergenic
AAGAGGAGTTTGAGCTATAA+TGG 0.374339 tig0021354:+40444 Msa1390500:CDS
AATAAGTGATCTGTATTAAC+AGG 0.376994 tig0021354:+46128 Msa1390500:three_prime_UTR
TTAGCATCTTAAACGAGTTT+AGG 0.381517 tig0021354:+46057 Msa1390500:three_prime_UTR
TGCAGCCTAATATATGAATC+TGG 0.381687 tig0021354:+41850 Msa1390500:intron
TTTCCAAAAGATTCAAGAAA+TGG 0.384973 tig0021354:+44295 Msa1390500:CDS
GCATACCAGCTTCCCACTTT+CGG 0.391492 tig0021354:-42421 None:intergenic
AAGCCCGGTATGAAATATTA+AGG 0.392685 tig0021354:+45305 Msa1390500:CDS
ATTACTGGTGGCCTATTCTC+TGG 0.394568 tig0021354:-46250 None:intergenic
GTAGTAGCTTCATGAAAATC+TGG 0.399069 tig0021354:-45561 None:intergenic
AAAGTAGACATCATTTACTA+TGG 0.403910 tig0021354:-39760 None:intergenic
TCGTCAAGGGGAACGGGAAT+CGG 0.406300 tig0021354:-40471 None:intergenic
TTGCACATTATCTGCAAGAA+AGG 0.411537 tig0021354:-40496 None:intergenic
TGGAAAATTGATTTGAATGA+GGG 0.413815 tig0021354:-39879 None:intergenic
AGTAAATGGTTCTCCGAAAG+TGG 0.417358 tig0021354:+42408 Msa1390500:CDS
GCTAGAAAAGCTGCTTTGTC+TGG 0.421700 tig0021354:+44463 Msa1390500:CDS
TCCCCAGTTTGTCCTTGTTG+TGG 0.422448 tig0021354:-39689 None:intergenic
ATACTAACTTACTTGATCTC+AGG 0.427096 tig0021354:+46003 Msa1390500:three_prime_UTR
TTGATAGGATTGCAATCAAA+AGG 0.427262 tig0021354:-45788 None:intergenic
GAGTATAGACGGTCATGTAT+TGG 0.429056 tig0021354:+46166 Msa1390500:three_prime_UTR
AGTCTTCTAGCTTCAATGAA+TGG 0.432368 tig0021354:+41695 Msa1390500:CDS
ATTGTACATAAGAACTTGAT+AGG 0.435567 tig0021354:-45803 None:intergenic
CTTTGACAGCTTAGCGAAGA+AGG 0.439270 tig0021354:+41643 Msa1390500:intron
GTAAATGATGTCTACTTTCA+CGG 0.441947 tig0021354:+39765 Msa1390500:five_prime_UTR
AAGGGTTCGTCAAGGGGAAC+GGG 0.442722 tig0021354:-40477 None:intergenic
TGCTTTACTCTTCACTGAAA+AGG 0.448394 tig0021354:+41906 Msa1390500:CDS
TGATCTCAGGGAGATTAAGT+TGG 0.459197 tig0021354:+46016 Msa1390500:three_prime_UTR
CCGAATAGAATCAGAAGGTT+CGG 0.463353 tig0021354:-44488 None:intergenic
GGTAGAGGAAGAAGGCAATC+TGG 0.464540 tig0021354:+44316 Msa1390500:CDS
CAATGCATTATTAACTCAGA+TGG 0.466410 tig0021354:+44694 Msa1390500:CDS
GTGGAAAATTGATTTGAATG+AGG 0.466671 tig0021354:-39880 None:intergenic
AACGAGTTTAGGCTCAATCA+TGG 0.470944 tig0021354:+46068 Msa1390500:three_prime_UTR
TCCTCCGGTGGAAGAGGAGG+AGG 0.471701 tig0021354:-40059 None:intergenic
GATGTCCGTTCCGCCGTTGA+GGG 0.473816 tig0021354:+40227 Msa1390500:CDS
AAGCTTCGCTTACATTAGTC+AGG 0.474119 tig0021354:-45860 None:intergenic
TGCTCCGTCTCCATTGGACT+AGG 0.480792 tig0021354:-39972 None:intergenic
CTTAAAGTCACTATGAAAGT+AGG 0.484412 tig0021354:-39716 None:intergenic
GTGCATTCACTTCAACAAGC+TGG 0.486304 tig0021354:-42374 None:intergenic
TGCACATTATCTGCAAGAAA+GGG 0.489264 tig0021354:-40495 None:intergenic
GATCTCAGGGAGATTAAGTT+GGG 0.489932 tig0021354:+46017 Msa1390500:three_prime_UTR
AATATTAAGGTCTTGTGTGC+AGG 0.492194 tig0021354:+45318 Msa1390500:CDS
CAATGCACCTCGAATTGAAT+CGG 0.492486 tig0021354:-42250 None:intergenic
TCCGGTGGAAGAGGAGGAGG+GGG 0.493517 tig0021354:-40056 None:intergenic
AAGACCTTAATATTTCATAC+CGG 0.493523 tig0021354:-45309 None:intergenic
TCATACCGGGCTTGAAGAGT+TGG 0.496365 tig0021354:-45295 None:intergenic
ATCGTGAATTGAAGCTGTGC+TGG 0.497938 tig0021354:-40207 None:intergenic
TGTCAATCCGATTCAATTCG+AGG 0.498172 tig0021354:+42243 Msa1390500:CDS
GAAAACAAGTCCTAAGACTC+CGG 0.502738 tig0021354:-46101 None:intergenic
AAAGGGTTCGTCAAGGGGAA+CGG 0.504383 tig0021354:-40478 None:intergenic
TGGTGGTAGAGGTGAACGTT+GGG 0.507649 tig0021354:-40030 None:intergenic
TACCGGGCTTGAAGAGTTGG+TGG 0.509140 tig0021354:-45292 None:intergenic
CGATGTCCGTTCCGCCGTTG+AGG 0.509936 tig0021354:+40226 Msa1390500:CDS
TTCATTATAAACCAGAGAAT+AGG 0.511975 tig0021354:+46239 Msa1390500:three_prime_UTR
GTGCAGGAACTTATGCGTAC+AGG 0.512151 tig0021354:+45334 Msa1390500:CDS
GTTCTCCGAAAGTGGGAAGC+TGG 0.513645 tig0021354:+42416 Msa1390500:CDS
TGCAAGAAAGGGTTCGTCAA+GGG 0.514065 tig0021354:-40484 None:intergenic
AACCCTACGACCGACCAAAA+CGG 0.518371 tig0021354:+39996 Msa1390500:CDS
TGCATTCACTTCAACAAGCT+GGG 0.518386 tig0021354:-42373 None:intergenic
CAATCATGGGATCAGTGTCC+CGG 0.522402 tig0021354:+46082 Msa1390500:three_prime_UTR
ACCTGAAAGACATGTACTAC+AGG 0.522775 tig0021354:-41083 None:intergenic
AATTTGATGGCATGTGGGAA+AGG 0.528949 tig0021354:+41734 Msa1390500:CDS
ATCTGTCCACAGGGAATGAG+TGG 0.529805 tig0021354:+45716 Msa1390500:intron
AAAGACGTCTTTCCAGTCCC+AGG 0.535392 tig0021354:-42197 None:intergenic
TAAACTCGTTTAAGATGCTA+AGG 0.536108 tig0021354:-46055 None:intergenic
CAAGAAATGGTAGAGGAAGA+AGG 0.537039 tig0021354:+44308 Msa1390500:CDS
ATGGTGGTAGAGGTGAACGT+TGG 0.542015 tig0021354:-40031 None:intergenic
CTTCAACAAGCTGGGCCTGT+GGG 0.542287 tig0021354:-42365 None:intergenic
AGGTGAACGTTGGGAAGCTA+CGG 0.544888 tig0021354:-40021 None:intergenic
AAGTTAGTATTGCTAGCTCC+TGG 0.545184 tig0021354:-45990 None:intergenic
GCCCACCAACTCTTCAAGCC+CGG 0.546674 tig0021354:+45290 Msa1390500:CDS
TCCAACATTACTGCTGCTAT+CGG 0.546949 tig0021354:+44758 Msa1390500:CDS
TCCCACAACAAGGACAAACT+GGG 0.548132 tig0021354:+39687 Msa1390500:five_prime_UTR
CCCTCCTCCTCTTCCACCGG+AGG 0.551215 tig0021354:+40058 Msa1390500:CDS
TTTCCCACTCAGATTCCCAC+AGG 0.553521 tig0021354:+42350 Msa1390500:intron
GCTAAATTTGTAATTACTGG+TGG 0.556428 tig0021354:-46262 None:intergenic
ATTCATTGAAGCTAGAAGAC+TGG 0.559709 tig0021354:-41693 None:intergenic
ACTTCAACAAGCTGGGCCTG+TGG 0.562535 tig0021354:-42366 None:intergenic
TGCAGGAACTTATGCGTACA+GGG 0.563349 tig0021354:+45335 Msa1390500:CDS
ATTACCCCTCAACGGCGGAA+CGG 0.564389 tig0021354:-40232 None:intergenic
ACCGATAGCAGCAGTAATGT+TGG 0.565609 tig0021354:-44759 None:intergenic
ATGTCCGTTCCGCCGTTGAG+GGG 0.566371 tig0021354:+40228 Msa1390500:CDS
TGGCAGTAGAAGTCAAGTCA+TGG 0.569643 tig0021354:+39817 Msa1390500:five_prime_UTR
CGGTTCCATGAAACAAGGAA+TGG 0.570883 tig0021354:-41937 None:intergenic
CTCCGGTGGAAGAGGAGGAG+GGG 0.573112 tig0021354:-40057 None:intergenic
ATACCAAAGTTGCATAAGTA+CGG 0.574875 tig0021354:+39630 None:intergenic
ATTTATTATACAGAGTTACC+AGG 0.576786 tig0021354:+45972 Msa1390500:intron
GCTGATATCAAAGCATATGT+TGG 0.577084 tig0021354:+45268 Msa1390500:CDS
AAAGATTCAAGAAATGGTAG+AGG 0.577519 tig0021354:+44301 Msa1390500:CDS
AGCAGCAGTAATGTTGGATG+TGG 0.577677 tig0021354:-44753 None:intergenic
CCTCCGGTGGAAGAGGAGGA+GGG 0.577752 tig0021354:-40058 None:intergenic
TGTGAGGATATCAGCTCTGA+TGG 0.579798 tig0021354:+41670 Msa1390500:CDS
TTCTCCTAGTCCAATGGAGA+CGG 0.580470 tig0021354:+39968 Msa1390500:CDS
GAGCACTTCTCCTAGTCCAA+TGG 0.582713 tig0021354:+39962 Msa1390500:CDS
GCATGCTTTATGAGTATAGA+CGG 0.583351 tig0021354:+46155 Msa1390500:three_prime_UTR
GCAAGAAAGGGTTCGTCAAG+GGG 0.584552 tig0021354:-40483 None:intergenic
CAAAAGAATTTGATGGCATG+TGG 0.585350 tig0021354:+41728 Msa1390500:CDS
ATGAATCTGGTCTAAAGCAA+AGG 0.586924 tig0021354:+41863 Msa1390500:CDS
AGACCTTAATATTTCATACC+GGG 0.587758 tig0021354:-45308 None:intergenic
TTTACCCGAATAGAATCAGA+AGG 0.588127 tig0021354:-44493 None:intergenic
ACGAGTTTAGGCTCAATCAT+GGG 0.588245 tig0021354:+46069 Msa1390500:three_prime_UTR
GTCCACAGGGAATGAGTGGA+AGG 0.588613 tig0021354:+45720 Msa1390500:intron
TACTAACTTACTTGATCTCA+GGG 0.589062 tig0021354:+46004 Msa1390500:three_prime_UTR
AATGATAGATACAGCAAAGA+GGG 0.590323 tig0021354:+45823 Msa1390500:CDS
AAGACGTCTTTCCAGTCCCA+GGG 0.593674 tig0021354:-42196 None:intergenic
GGTGGGTCTCTGAGAACGAA+GGG 0.597026 tig0021354:-39913 None:intergenic
GGCAGTAGAAGTCAAGTCAT+GGG 0.601027 tig0021354:+39818 Msa1390500:five_prime_UTR
GTCTAAAGCAAAGGTTGCTG+CGG 0.601511 tig0021354:+41872 Msa1390500:CDS
GAGGATAAAATTCTCGTCCC+TGG 0.601718 tig0021354:+40077 Msa1390500:CDS
CTTGCGAGTTGCAACTGGGT+GGG 0.606075 tig0021354:-39930 None:intergenic
GGGTGGGTCTCTGAGAACGA+AGG 0.606592 tig0021354:-39914 None:intergenic
TTATCCTCCGGTGGAAGAGG+AGG 0.607446 tig0021354:-40062 None:intergenic
AAAACAAGTCCTAAGACTCC+GGG 0.612529 tig0021354:-46100 None:intergenic
CTGCAAGAAAGGGTTCGTCA+AGG 0.618408 tig0021354:-40485 None:intergenic
GTAAATGGTTCTCCGAAAGT+GGG 0.626891 tig0021354:+42409 Msa1390500:CDS
TTGTCCTTGTTGTGGGATCG+AGG 0.628869 tig0021354:-39681 None:intergenic
CTCACCGGTTCCATGAAACA+AGG 0.629691 tig0021354:-41942 None:intergenic
TGAAGCACTTGAATTGATGA+AGG 0.634626 tig0021354:+46204 Msa1390500:three_prime_UTR
GTGGGTCTCTGAGAACGAAG+GGG 0.639052 tig0021354:-39912 None:intergenic
TGAAACTGCAGAGGCATGTG+AGG 0.639294 tig0021354:+45611 Msa1390500:CDS
TGGGTCTCTGAGAACGAAGG+GGG 0.640454 tig0021354:-39911 None:intergenic
GATGCTTGCGAGTTGCAACT+GGG 0.642526 tig0021354:-39934 None:intergenic
GAAATTAGTTGAAACTGCAG+AGG 0.644635 tig0021354:+45602 Msa1390500:CDS
TAGCGAAGAAGGACCGTGTG+AGG 0.645973 tig0021354:+41654 Msa1390500:CDS
TGAATTGAAGCTGTGCTGGA+AGG 0.649944 tig0021354:-40203 None:intergenic
ACCGGGCTTGAAGAGTTGGT+GGG 0.651440 tig0021354:-45291 None:intergenic
TCATCCTCGATCCCACAACA+AGG 0.656222 tig0021354:+39677 Msa1390500:five_prime_UTR
AAAAGAATTTGATGGCATGT+GGG 0.664280 tig0021354:+41729 Msa1390500:CDS
GCTTGCGAGTTGCAACTGGG+TGG 0.668100 tig0021354:-39931 None:intergenic
AGGAGTTTGAGCTATAATGG+TGG 0.669249 tig0021354:+40447 Msa1390500:CDS
GAATTGATGAAGGTGATGCA+TGG 0.669339 tig0021354:+46214 Msa1390500:three_prime_UTR
CAATGATAGATACAGCAAAG+AGG 0.670119 tig0021354:+45822 Msa1390500:CDS
GATAGATTATTACCCCTCAA+CGG 0.678759 tig0021354:-40240 None:intergenic
AGACGTCTTTCCAGTCCCAG+GGG 0.712576 tig0021354:-42195 None:intergenic
CCCACAACAAGGACAAACTG+GGG 0.712981 tig0021354:+39688 Msa1390500:five_prime_UTR
GACGTCTTTCCAGTCCCAGG+GGG 0.718244 tig0021354:-42194 None:intergenic
AGATTATTACCCCTCAACGG+CGG 0.725535 tig0021354:-40237 None:intergenic
TCAGAGCTGATATCCTCACA+CGG 0.742150 tig0021354:-41667 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTTTATTTTTAAAA+AGG + tig0021354:43558-43577 Msa1390500:intron 0.0%
!!! ATATTTTTTATTTTTAAAAA+GGG + tig0021354:43559-43578 Msa1390500:intron 0.0%
!!! ACTAATTTTAATTATTCTAT+CGG + tig0021354:40364-40383 Msa1390500:intron 10.0%
!!! AGTAACTTTTTATTTTTTAT+AGG + tig0021354:41014-41033 Msa1390500:intron 10.0%
!!! ATATGTATTTATTTTTGTAT+TGG + tig0021354:41973-41992 Msa1390500:intron 10.0%
!! TAATAATAAGATGTAATAAA+TGG - tig0021354:43150-43169 None:intergenic 10.0%
!! ACTATCAATATAATATTTAT+GGG - tig0021354:44853-44872 None:intergenic 10.0%
!! AACTATCAATATAATATTTA+TGG - tig0021354:44854-44873 None:intergenic 10.0%
!! TTAATAATCTAATCTTTATT+TGG + tig0021354:45428-45447 Msa1390500:intron 10.0%
!!! TTTATTTTGTTATAGTTTCT+AGG + tig0021354:40273-40292 Msa1390500:intron 15.0%
!!! TTATTTTGTTATAGTTTCTA+GGG + tig0021354:40274-40293 Msa1390500:intron 15.0%
!!! CTAATTTTAATTATTCTATC+GGG + tig0021354:40365-40384 Msa1390500:intron 15.0%
!!! TTTATTTTCAATTGTTTGTA+TGG + tig0021354:40556-40575 Msa1390500:intron 15.0%
!!! TTTTTATTTTTTATAGGTGA+AGG + tig0021354:41020-41039 Msa1390500:intron 15.0%
!!! TTTTATTTTTTATAGGTGAA+GGG + tig0021354:41021-41040 Msa1390500:intron 15.0%
!! AAATATTAAGATATGTTCAT+AGG - tig0021354:42132-42151 None:intergenic 15.0%
!!! GAACATATCTTAATATTTTT+AGG + tig0021354:42134-42153 Msa1390500:intron 15.0%
!!! AATTTTTATCCATCATATAA+AGG - tig0021354:42824-42843 None:intergenic 15.0%
!! TGTATTAAAAAGCAAAAAAA+TGG + tig0021354:43072-43091 Msa1390500:intron 15.0%
!!! AAAAAAAAAAGTATACCAAA+TGG + tig0021354:43883-43902 Msa1390500:intron 15.0%
!! TTTCAAATGAAAATATATTG+GGG - tig0021354:45178-45197 None:intergenic 15.0%
!! GTTTCAAATGAAAATATATT+GGG - tig0021354:45179-45198 None:intergenic 15.0%
!!! ATTTTAGTTTGTTAATCTAA+TGG + tig0021354:45459-45478 Msa1390500:intron 15.0%
!! TAATTACAAATTTAGCATTA+TGG + tig0021354:46269-46288 Msa1390500:three_prime_UTR 15.0%
!!! TGACTTTAAGATTTGTTTTT+TGG + tig0021354:39729-39748 Msa1390500:five_prime_UTR 20.0%
!!! ATAGAAATTGATTTTCTTTG+TGG + tig0021354:40300-40319 Msa1390500:intron 20.0%
!! TGAATTTATGATAATTCAAC+TGG + tig0021354:40403-40422 Msa1390500:intron 20.0%
!!! TGATTTTATTGCTATCATTA+TGG + tig0021354:40590-40609 Msa1390500:intron 20.0%
!!! TCACTTTAAACGATTTTTTT+TGG + tig0021354:40799-40818 Msa1390500:intron 20.0%
!! ATATATTCAATGAGCATATA+TGG + tig0021354:41194-41213 Msa1390500:intron 20.0%
!!! TTTTGGATTTAAAAACACAA+AGG - tig0021354:41233-41252 None:intergenic 20.0%
!!! TTTGTGTTTTTAAATCCAAA+AGG + tig0021354:41232-41251 Msa1390500:intron 20.0%
!! ATTGAAAACAAGTAAATGAA+GGG + tig0021354:42305-42324 Msa1390500:intron 20.0%
!! AGCTTCAATGTTTATTATAT+TGG + tig0021354:42525-42544 Msa1390500:intron 20.0%
!! ATTACATCTTATTATTAGTC+TGG + tig0021354:43153-43172 Msa1390500:intron 20.0%
!! TTCTATCATAAACCATATTT+CGG + tig0021354:43387-43406 Msa1390500:intron 20.0%
!! TATAAGAGAAACTATTAAGA+AGG - tig0021354:43435-43454 None:intergenic 20.0%
!! GTAAATTACATGTATCATTT+AGG + tig0021354:44028-44047 Msa1390500:intron 20.0%
!! TGATACTATTAAGAGATTAT+TGG - tig0021354:44106-44125 None:intergenic 20.0%
!! TTAAATGACCGTAAAAAAAA+TGG + tig0021354:44956-44975 Msa1390500:intron 20.0%
!! TAAATGACCGTAAAAAAAAT+GGG + tig0021354:44957-44976 Msa1390500:intron 20.0%
!! CGTTTCAAATGAAAATATAT+TGG - tig0021354:45180-45199 None:intergenic 20.0%
!! TTAATTGAACAACTATTACT+TGG - tig0021354:45886-45905 None:intergenic 20.0%
!! AATGCTAAATTTGTAATTAC+TGG - tig0021354:46268-46287 None:intergenic 20.0%
! AAAGTAGACATCATTTACTA+TGG - tig0021354:39763-39782 None:intergenic 25.0%
!!! TGAGGGTTTTCTTTTAATTT+CGG - tig0021354:39865-39884 None:intergenic 25.0%
!!! TGGAAAATTGATTTGAATGA+GGG - tig0021354:39882-39901 None:intergenic 25.0%
! AATTGGAATCTATAGAATAG+AGG - tig0021354:40130-40149 None:intergenic 25.0%
! ACGAAAATTAGTTGAGAAAT+TGG - tig0021354:40147-40166 None:intergenic 25.0%
!!! GATAATTCAACTGGTTTTTT+AGG + tig0021354:40412-40431 Msa1390500:intron 25.0%
!! ATTTTCAATTGTTTGTATGG+TGG + tig0021354:40559-40578 Msa1390500:intron 25.0%
!!! TTTGATTTTACGTTTACTCA+CGG + tig0021354:40712-40731 Msa1390500:intron 25.0%
! TTCTCAATTTCACAACAAAA+GGG - tig0021354:40756-40775 None:intergenic 25.0%
!!! GAGTAATTTTGACTAAATGT+GGG + tig0021354:40821-40840 Msa1390500:intron 25.0%
! TAGCAATTAGTATGTCAATA+TGG + tig0021354:40899-40918 Msa1390500:intron 25.0%
! ATATTAGTCAAGCAAAGATA+TGG - tig0021354:41178-41197 None:intergenic 25.0%
!!! CTTTTGTTACTTTCTCTTTT+CGG - tig0021354:41428-41447 None:intergenic 25.0%
! AACATGCATATAGTAAACAA+AGG + tig0021354:41461-41480 Msa1390500:intron 25.0%
! ATCAAGAAAACTATAGTTGA+GGG - tig0021354:41788-41807 None:intergenic 25.0%
! TATCAAGAAAACTATAGTTG+AGG - tig0021354:41789-41808 None:intergenic 25.0%
! TTAGACCAGATTCATATATT+AGG - tig0021354:41858-41877 None:intergenic 25.0%
! CATTGAAAACAAGTAAATGA+AGG + tig0021354:42304-42323 Msa1390500:intron 25.0%
! ATGACAGAAACTTAAAGTAA+AGG - tig0021354:42454-42473 None:intergenic 25.0%
!! ATAAAAGCGTGAATTACAAA+AGG - tig0021354:42497-42516 None:intergenic 25.0%
! TAATAAACATTGAAGCTAGT+AGG - tig0021354:42522-42541 None:intergenic 25.0%
! ATATGATTATGGTAGTACAT+AGG - tig0021354:43299-43318 None:intergenic 25.0%
!! GTTGTTGTTCTATATGATTA+TGG - tig0021354:43310-43329 None:intergenic 25.0%
! TGGTTTATGATAGAACATTA+TGG - tig0021354:43382-43401 None:intergenic 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG + tig0021354:43443-43462 Msa1390500:intron 25.0%
! ACTACCATACTAACAATAAA+TGG + tig0021354:43481-43500 Msa1390500:intron 25.0%
!!! TTTTCTTTTTCATCCTGTAT+GGG - tig0021354:43534-43553 None:intergenic 25.0%
!!! ATTTTCTTTTTCATCCTGTA+TGG - tig0021354:43535-43554 None:intergenic 25.0%
! TTCTTGTATAACGAAATAAG+TGG + tig0021354:43649-43668 Msa1390500:intron 25.0%
! TTCATAGTTAATATGCTTCA+TGG - tig0021354:43752-43771 None:intergenic 25.0%
! GAATACATGTGATTAAACAT+AGG - tig0021354:43852-43871 None:intergenic 25.0%
! AAATATTATCCAGGGAAAAA+TGG - tig0021354:43955-43974 None:intergenic 25.0%
! TGAACAGAAAATATTATCCA+GGG - tig0021354:43963-43982 None:intergenic 25.0%
! ATGAACAGAAAATATTATCC+AGG - tig0021354:43964-43983 None:intergenic 25.0%
! AATTACATGTATCATTTAGG+TGG + tig0021354:44031-44050 Msa1390500:intron 25.0%
! ATTACATGTATCATTTAGGT+GGG + tig0021354:44032-44051 Msa1390500:intron 25.0%
! GATTATTGGACTATAGTTAA+GGG - tig0021354:44092-44111 None:intergenic 25.0%
! AGATTATTGGACTATAGTTA+AGG - tig0021354:44093-44112 None:intergenic 25.0%
!! TATCATTTGACTATCTGTTT+TGG + tig0021354:44121-44140 Msa1390500:intron 25.0%
!!! ACTATCTGTTTTGGAATTTA+AGG + tig0021354:44130-44149 Msa1390500:intron 25.0%
! ACAGAGATTAATAAGTCAAT+TGG + tig0021354:44164-44183 Msa1390500:intron 25.0%
! TTTCCAAAAGATTCAAGAAA+TGG + tig0021354:44295-44314 Msa1390500:CDS 25.0%
!!! AATCTGGTATTTGTTTTGAT+CGG + tig0021354:44332-44351 Msa1390500:CDS 25.0%
! AGAAGTAATGACTTCTTTAT+GGG + tig0021354:44624-44643 Msa1390500:intron 25.0%
! CAATCTGAATATTCAATTTC+AGG + tig0021354:44667-44686 Msa1390500:intron 25.0%
! AATCACTAAATCCTCATTAA+GGG - tig0021354:44938-44957 None:intergenic 25.0%
! TAATCACTAAATCCTCATTA+AGG - tig0021354:44939-44958 None:intergenic 25.0%
! ATGTGCTTTATGTTAAAGTA+AGG - tig0021354:45078-45097 None:intergenic 25.0%
!!! AAACTATTTTAGGAAGACAT+TGG - tig0021354:45140-45159 None:intergenic 25.0%
!! GATCATGAAGAAACTATTTT+AGG - tig0021354:45150-45169 None:intergenic 25.0%
! AAGACCTTAATATTTCATAC+CGG - tig0021354:45312-45331 None:intergenic 25.0%
!! AGGGATATTAACTAATTTTG+AGG + tig0021354:45354-45373 Msa1390500:CDS 25.0%
!! TTCATTTTCGAAAAAGATTC+CGG - tig0021354:45403-45422 None:intergenic 25.0%
!!! GAATCTTTTTCGAAAATGAA+AGG + tig0021354:45403-45422 Msa1390500:intron 25.0%
! ATTGTACATAAGAACTTGAT+AGG - tig0021354:45806-45825 None:intergenic 25.0%
! TAAAATGAAGTGGAAATAAG+CGG - tig0021354:45916-45935 None:intergenic 25.0%
! ATTTATTATACAGAGTTACC+AGG + tig0021354:45972-45991 Msa1390500:intron 25.0%
! AATAAGTGATCTGTATTAAC+AGG + tig0021354:46128-46147 Msa1390500:three_prime_UTR 25.0%
! TTCATTATAAACCAGAGAAT+AGG + tig0021354:46239-46258 Msa1390500:three_prime_UTR 25.0%
CTTAAAGTCACTATGAAAGT+AGG - tig0021354:39719-39738 None:intergenic 30.0%
GTAAATGATGTCTACTTTCA+CGG + tig0021354:39765-39784 Msa1390500:five_prime_UTR 30.0%
!! GTGGAAAATTGATTTGAATG+AGG - tig0021354:39883-39902 None:intergenic 30.0%
! CATTTTGCTTATTATAGTCG+AGG + tig0021354:40169-40188 Msa1390500:intron 30.0%
!!! TTTTTAGGATGCTTGAAAAG+AGG + tig0021354:40427-40446 Msa1390500:intron 30.0%
TTATTGCTATCATTATGGAG+TGG + tig0021354:40595-40614 Msa1390500:intron 30.0%
GTCTTAATGGAACTTTAGAT+TGG - tig0021354:40678-40697 None:intergenic 30.0%
ACATCATAAGACAGTCTTAA+TGG - tig0021354:40691-40710 None:intergenic 30.0%
CTTCTCAATTTCACAACAAA+AGG - tig0021354:40757-40776 None:intergenic 30.0%
!!! GGAGTAATTTTGACTAAATG+TGG + tig0021354:40820-40839 Msa1390500:intron 30.0%
AGTATGTCAATATGGAAGAT+AGG + tig0021354:40907-40926 Msa1390500:intron 30.0%
TGATCAGTCTATATTGTCTA+GGG - tig0021354:40968-40987 None:intergenic 30.0%
TTGATCAGTCTATATTGTCT+AGG - tig0021354:40969-40988 None:intergenic 30.0%
!! ATGATAACGTTCTTTTGTTC+TGG + tig0021354:41051-41070 Msa1390500:CDS 30.0%
AAACACAAAGGAAAAACCAT+AGG - tig0021354:41221-41240 None:intergenic 30.0%
AAAAGGTGATAAGCTTCAAT+CGG + tig0021354:41249-41268 Msa1390500:intron 30.0%
TAATGGGGGAAGTTTATTAT+GGG - tig0021354:41329-41348 None:intergenic 30.0%
CTAAGCAAAGTACAATTAGA+GGG - tig0021354:41562-41581 None:intergenic 30.0%
ACTAAGCAAAGTACAATTAG+AGG - tig0021354:41563-41582 None:intergenic 30.0%
ATCTCTTTGTTCTGTTAATG+TGG + tig0021354:41588-41607 Msa1390500:intron 30.0%
! AAAAGAATTTGATGGCATGT+GGG + tig0021354:41729-41748 Msa1390500:CDS 30.0%
AGTTGTGATCACAACATATA+AGG - tig0021354:41999-42018 None:intergenic 30.0%
! GTAGAGATACGATATTTTTC+AGG - tig0021354:42042-42061 None:intergenic 30.0%
CACATTCTTTGTTCAGTAAA+TGG + tig0021354:42394-42413 Msa1390500:CDS 30.0%
GTTTATTATATTGGTGAGCT+TGG + tig0021354:42534-42553 Msa1390500:intron 30.0%
! ATATCAATTTGAAGCGACAA+GGG - tig0021354:42609-42628 None:intergenic 30.0%
TTGATATCAAGCTTGATCAA+AGG + tig0021354:42622-42641 Msa1390500:intron 30.0%
AATTCTAACTACCAAACAGT+GGG - tig0021354:42676-42695 None:intergenic 30.0%
AAATTCTAACTACCAAACAG+TGG - tig0021354:42677-42696 None:intergenic 30.0%
! AACAGGATTTTCATATCTTC+TGG - tig0021354:42703-42722 None:intergenic 30.0%
CTTTAACTATTAGCTAGCAT+TGG + tig0021354:42772-42791 Msa1390500:intron 30.0%
CCATCATATAAAGGTAGAAT+GGG - tig0021354:42815-42834 None:intergenic 30.0%
TCCATCATATAAAGGTAGAA+TGG - tig0021354:42816-42835 None:intergenic 30.0%
TGTGTCTTCAAACATAAAGT+TGG - tig0021354:42848-42867 None:intergenic 30.0%
TTCTTAGAGGATTATTATGC+TGG + tig0021354:42868-42887 Msa1390500:intron 30.0%
TCTTAGAGGATTATTATGCT+GGG + tig0021354:42869-42888 Msa1390500:intron 30.0%
CAAAACACTTTATCAATGCA+CGG - tig0021354:42956-42975 None:intergenic 30.0%
!!! TAAAGTGTTTTGATTTCCTG+TGG + tig0021354:42964-42983 Msa1390500:intron 30.0%
!!! AAAGTGTTTTGATTTCCTGT+GGG + tig0021354:42965-42984 Msa1390500:intron 30.0%
TTCAGGAAAAATAGGTTCAT+CGG + tig0021354:42994-43013 Msa1390500:intron 30.0%
! CAAATGTGTATGCTTTTGTA+TGG - tig0021354:43034-43053 None:intergenic 30.0%
TTCATTGTGATTGGTACTTT+CGG + tig0021354:43106-43125 Msa1390500:intron 30.0%
!!! ATTATTAGTCTGGTTTTGCA+AGG + tig0021354:43163-43182 Msa1390500:intron 30.0%
TATTGTTAGTATGGTAGTAG+AGG - tig0021354:43479-43498 None:intergenic 30.0%
! ACTGCCATTTATTGTTAGTA+TGG - tig0021354:43488-43507 None:intergenic 30.0%
!! TATTTTTAAAAAGGGCAACC+AGG + tig0021354:43567-43586 Msa1390500:intron 30.0%
GAAGCATATTAACTATGAAG+AGG + tig0021354:43753-43772 Msa1390500:intron 30.0%
GTATCCATAATAGGATTATG+TGG - tig0021354:43909-43928 None:intergenic 30.0%
ATGTTTGCAGTATCCATAAT+AGG - tig0021354:43918-43937 None:intergenic 30.0%
ACACAACAAAACTACAACTT+TGG - tig0021354:44231-44250 None:intergenic 30.0%
! CTACCATTTCTTGAATCTTT+TGG - tig0021354:44301-44320 None:intergenic 30.0%
AAAGATTCAAGAAATGGTAG+AGG + tig0021354:44301-44320 Msa1390500:CDS 30.0%
! TCGCATTTTCAAAAAATCGT+GGG - tig0021354:44562-44581 None:intergenic 30.0%
! ATCGCATTTTCAAAAAATCG+TGG - tig0021354:44563-44582 None:intergenic 30.0%
CAGAAGTAATGACTTCTTTA+TGG + tig0021354:44623-44642 Msa1390500:intron 30.0%
TATGGGTGTCTGTAATAATA+TGG + tig0021354:44641-44660 Msa1390500:intron 30.0%
ATGGGTGTCTGTAATAATAT+GGG + tig0021354:44642-44661 Msa1390500:intron 30.0%
CAATGCATTATTAACTCAGA+TGG + tig0021354:44694-44713 Msa1390500:CDS 30.0%
GTGGTTAGAATTATCACATT+TGG - tig0021354:44737-44756 None:intergenic 30.0%
GAATGATGAGAAAGTGATAT+AGG - tig0021354:44788-44807 None:intergenic 30.0%
TAGACTGATGTATAATGACA+AGG - tig0021354:44885-44904 None:intergenic 30.0%
!!! GTGCATTCCCATTTTTTTTA+CGG - tig0021354:44967-44986 None:intergenic 30.0%
! AAAACCTTTTTCCACTAGTT+AGG + tig0021354:45105-45124 Msa1390500:intron 30.0%
ATGAAAATATATTGGGGAAG+TGG - tig0021354:45172-45191 None:intergenic 30.0%
AGACCTTAATATTTCATACC+GGG - tig0021354:45311-45330 None:intergenic 30.0%
!!! ACTAATTTTGAGGTACAGAT+AGG + tig0021354:45364-45383 Msa1390500:intron 30.0%
! TCATTTTCGAAAAAGATTCC+GGG - tig0021354:45402-45421 None:intergenic 30.0%
! TGTTTTGCACTAGCATAATT+TGG - tig0021354:45528-45547 None:intergenic 30.0%
GGAAAAAAAGATAACACTTG+TGG + tig0021354:45636-45655 Msa1390500:intron 30.0%
TCTTTAACCTCACAATCTTT+AGG + tig0021354:45660-45679 Msa1390500:intron 30.0%
CAGCAGTTATTGAGAAATAA+AGG - tig0021354:45690-45709 None:intergenic 30.0%
TTGATAGGATTGCAATCAAA+AGG - tig0021354:45791-45810 None:intergenic 30.0%
AATGATAGATACAGCAAAGA+GGG + tig0021354:45823-45842 Msa1390500:CDS 30.0%
TTTATCGCACTAAAATGAAG+TGG - tig0021354:45926-45945 None:intergenic 30.0%
ATACTAACTTACTTGATCTC+AGG + tig0021354:46003-46022 Msa1390500:three_prime_UTR 30.0%
TACTAACTTACTTGATCTCA+GGG + tig0021354:46004-46023 Msa1390500:three_prime_UTR 30.0%
! TAAACTCGTTTAAGATGCTA+AGG - tig0021354:46058-46077 None:intergenic 30.0%
TTAGCATCTTAAACGAGTTT+AGG + tig0021354:46057-46076 Msa1390500:three_prime_UTR 30.0%
GCTAAATTTGTAATTACTGG+TGG - tig0021354:46265-46284 None:intergenic 30.0%
CACTTGTACTTTCCAAAATC+TGG - tig0021354:39799-39818 None:intergenic 35.0%
!! CAGATTTTGGAAAGTACAAG+TGG + tig0021354:39797-39816 Msa1390500:five_prime_UTR 35.0%
!!! GGTTTTCTTTTAATTTCGGC+GGG - tig0021354:39861-39880 None:intergenic 35.0%
!!! GGGTTTTCTTTTAATTTCGG+CGG - tig0021354:39862-39881 None:intergenic 35.0%
GAAGATAAGATTAGAGAGAG+TGG - tig0021354:40108-40127 None:intergenic 35.0%
GATAGATTATTACCCCTCAA+CGG - tig0021354:40243-40262 None:intergenic 35.0%
!!! TGTGGTTTTAGTTTTGTGTG+AGG + tig0021354:40318-40337 Msa1390500:intron 35.0%
!!! GTGGTTTTAGTTTTGTGTGA+GGG + tig0021354:40319-40338 Msa1390500:intron 35.0%
!!! TGGTTTTAGTTTTGTGTGAG+GGG + tig0021354:40320-40339 Msa1390500:intron 35.0%
AAGAGGAGTTTGAGCTATAA+TGG + tig0021354:40444-40463 Msa1390500:CDS 35.0%
TGCACATTATCTGCAAGAAA+GGG - tig0021354:40498-40517 None:intergenic 35.0%
TTGCACATTATCTGCAAGAA+AGG - tig0021354:40499-40518 None:intergenic 35.0%
AGAATTTGCGTTTGTGATAC+AGG + tig0021354:40519-40538 Msa1390500:CDS 35.0%
TTTGACTAAATGTGGGAATC+TGG + tig0021354:40828-40847 Msa1390500:intron 35.0%
CGTATAACTCAGACATTGTT+TGG - tig0021354:40862-40881 None:intergenic 35.0%
AAGCAAAGATATGGCAACTT+AGG - tig0021354:41169-41188 None:intergenic 35.0%
AATGAGCATATATGGTCCTA+TGG + tig0021354:41202-41221 Msa1390500:intron 35.0%
! GATTGAAGCTTATCACCTTT+TGG - tig0021354:41250-41269 None:intergenic 35.0%
! GTAATGGGGGAAGTTTATTA+TGG - tig0021354:41330-41349 None:intergenic 35.0%
! TGCTTATGTGTCGTTGTAAT+GGG - tig0021354:41345-41364 None:intergenic 35.0%
ATTCATTGAAGCTAGAAGAC+TGG - tig0021354:41696-41715 None:intergenic 35.0%
!! AGTCTTCTAGCTTCAATGAA+TGG + tig0021354:41695-41714 Msa1390500:CDS 35.0%
CTTCCTGCAAAAGAATTTGA+TGG + tig0021354:41721-41740 Msa1390500:CDS 35.0%
! ATGCCATCAAATTCTTTTGC+AGG - tig0021354:41727-41746 None:intergenic 35.0%
! CAAAAGAATTTGATGGCATG+TGG + tig0021354:41728-41747 Msa1390500:CDS 35.0%
ATATTAGGCTGCAAAAGCAA+TGG - tig0021354:41843-41862 None:intergenic 35.0%
TGCAGCCTAATATATGAATC+TGG + tig0021354:41850-41869 Msa1390500:intron 35.0%
! ATGAATCTGGTCTAAAGCAA+AGG + tig0021354:41863-41882 Msa1390500:CDS 35.0%
TGCTTTACTCTTCACTGAAA+AGG + tig0021354:41906-41925 Msa1390500:CDS 35.0%
! TTGATCCATTCCTTGTTTCA+TGG + tig0021354:41932-41951 Msa1390500:CDS 35.0%
!! TACATATCTCTAGAACTCAC+CGG - tig0021354:41960-41979 None:intergenic 35.0%
! TGCAGCATAATTCTTTTGCA+TGG + tig0021354:42170-42189 Msa1390500:intron 35.0%
CAATCAGTTTCACGTTATGT+GGG + tig0021354:42557-42576 Msa1390500:intron 35.0%
! GATATCAATTTGAAGCGACA+AGG - tig0021354:42610-42629 None:intergenic 35.0%
ATCAAGCTTGATCAAAGGAT+TGG + tig0021354:42627-42646 Msa1390500:intron 35.0%
! TTGGATTGACTCAAATAGCT+AGG + tig0021354:42646-42665 Msa1390500:intron 35.0%
!!! ATGGGCATAACTTTTGAGTT+TGG + tig0021354:42735-42754 Msa1390500:intron 35.0%
!!! TGGGCATAACTTTTGAGTTT+GGG + tig0021354:42736-42755 Msa1390500:intron 35.0%
!! CTATTAGCTAGCATTGGTTA+AGG + tig0021354:42778-42797 Msa1390500:intron 35.0%
CCCATTCTACCTTTATATGA+TGG + tig0021354:42812-42831 Msa1390500:intron 35.0%
GTTTGAAGACACATTCTTAG+AGG + tig0021354:42855-42874 Msa1390500:intron 35.0%
CAGGATAAAGATGGCAAAAA+AGG - tig0021354:42917-42936 None:intergenic 35.0%
!!! CTTTTTTGCCATCTTTATCC+TGG + tig0021354:42915-42934 Msa1390500:intron 35.0%
AACACCATCTTCATTGTGAT+TGG + tig0021354:43097-43116 Msa1390500:intron 35.0%
AGTACCAATCACAATGAAGA+TGG - tig0021354:43104-43123 None:intergenic 35.0%
! TTTTGCAAGGCATACTGTAT+CGG + tig0021354:43176-43195 Msa1390500:intron 35.0%
!!! TACTGTATCGGTTTTGACAT+TGG + tig0021354:43188-43207 Msa1390500:intron 35.0%
GGATTTAGAGATTACTGAGT+TGG - tig0021354:43414-43433 None:intergenic 35.0%
ACACAATAGATTACCCATAC+AGG + tig0021354:43518-43537 Msa1390500:intron 35.0%
TTTCGTTATACAAGAATCCC+TGG - tig0021354:43645-43664 None:intergenic 35.0%
AATAGGATTATGTGGCCATT+TGG - tig0021354:43901-43920 None:intergenic 35.0%
ATGGCCACATAATCCTATTA+TGG + tig0021354:43902-43921 Msa1390500:intron 35.0%
TTGTTGTGTCAAATGCGTAA+CGG + tig0021354:44242-44261 Msa1390500:intron 35.0%
!!! CGGTGTCTCTTTATTTTTCT+AGG + tig0021354:44262-44281 Msa1390500:intron 35.0%
TTTACCCGAATAGAATCAGA+AGG - tig0021354:44496-44515 None:intergenic 35.0%
! TTTTCAAAAAATCGTGGGGA+GGG - tig0021354:44557-44576 None:intergenic 35.0%
! ATTTTCAAAAAATCGTGGGG+AGG - tig0021354:44558-44577 None:intergenic 35.0%
! CGCATTTTCAAAAAATCGTG+GGG - tig0021354:44561-44580 None:intergenic 35.0%
AGAACAGCAGATAACTTACA+AGG - tig0021354:44828-44847 None:intergenic 35.0%
TGTTATTGTTTGTCTGATGC+TGG - tig0021354:45036-45055 None:intergenic 35.0%
TGTTCCTAACTAGTGGAAAA+AGG - tig0021354:45112-45131 None:intergenic 35.0%
!! ATTTTAGGAAGACATTGGAG+TGG - tig0021354:45135-45154 None:intergenic 35.0%
GCTGATATCAAAGCATATGT+TGG + tig0021354:45268-45287 Msa1390500:CDS 35.0%
AAGCCCGGTATGAAATATTA+AGG + tig0021354:45305-45324 Msa1390500:CDS 35.0%
! AATATTAAGGTCTTGTGTGC+AGG + tig0021354:45318-45337 Msa1390500:CDS 35.0%
! AATGGATAATCATGCTGACT+TGG + tig0021354:45477-45496 Msa1390500:intron 35.0%
!! ATAATCATGCTGACTTGGTT+AGG + tig0021354:45482-45501 Msa1390500:intron 35.0%
GTAGTAGCTTCATGAAAATC+TGG - tig0021354:45564-45583 None:intergenic 35.0%
GAAATTAGTTGAAACTGCAG+AGG + tig0021354:45602-45621 Msa1390500:CDS 35.0%
! TCTCAGAAAGCTTCCATTTT+TGG + tig0021354:45745-45764 Msa1390500:CDS 35.0%
CAATGATAGATACAGCAAAG+AGG + tig0021354:45822-45841 Msa1390500:CDS 35.0%
GCATGCTTTATGAGTATAGA+CGG + tig0021354:46155-46174 Msa1390500:three_prime_UTR 35.0%
! TGAAGCACTTGAATTGATGA+AGG + tig0021354:46204-46223 Msa1390500:three_prime_UTR 35.0%
!!! ATAGCTAGCTTTTGTTCAAG+AGG + tig0021354:46294-46313 Msa1390500:three_prime_UTR 35.0%
!!! TAGCTAGCTTTTGTTCAAGA+GGG + tig0021354:46295-46314 Msa1390500:three_prime_UTR 35.0%
! ACGGTGACTTTACCAGATTT+TGG + tig0021354:39784-39803 Msa1390500:five_prime_UTR 40.0%
!!! GGTTTTAGTTTTGTGTGAGG+GGG + tig0021354:40321-40340 Msa1390500:intron 40.0%
AGGAGTTTGAGCTATAATGG+TGG + tig0021354:40447-40466 Msa1390500:CDS 40.0%
CATTATGGAGTGGCAAGATA+TGG + tig0021354:40605-40624 Msa1390500:intron 40.0%
!! TTTCACAACAAAAGGGCATC+TGG - tig0021354:40749-40768 None:intergenic 40.0%
ACCTGAAAGACATGTACTAC+AGG - tig0021354:41086-41105 None:intergenic 40.0%
ATCTCTCATGAGACTGTGTA+TGG - tig0021354:41302-41321 None:intergenic 40.0%
! CTTATGTGTCGTTGTAATGG+GGG - tig0021354:41343-41362 None:intergenic 40.0%
! GCTTATGTGTCGTTGTAATG+GGG - tig0021354:41344-41363 None:intergenic 40.0%
! CTGCTTATGTGTCGTTGTAA+TGG - tig0021354:41346-41365 None:intergenic 40.0%
CAGAATCTGTAATCAGCTCA+TGG + tig0021354:41363-41382 Msa1390500:intron 40.0%
TGTAATCAGCTCATGGTAGA+AGG + tig0021354:41370-41389 Msa1390500:intron 40.0%
! GAAACCATTCTAGAAGCTGT+GGG - tig0021354:41402-41421 None:intergenic 40.0%
! AGAAACCATTCTAGAAGCTG+TGG - tig0021354:41403-41422 None:intergenic 40.0%
GGGATGATGTTGATGCATAA+TGG - tig0021354:41542-41561 None:intergenic 40.0%
! AATTTGATGGCATGTGGGAA+AGG + tig0021354:41734-41753 Msa1390500:CDS 40.0%
AAGCAATGGTAAATGGTGCA+AGG - tig0021354:41829-41848 None:intergenic 40.0%
GCTGCAAAAGCAATGGTAAA+TGG - tig0021354:41836-41855 None:intergenic 40.0%
! CATTCCTTGTTTCATGGAAC+CGG + tig0021354:41938-41957 Msa1390500:CDS 40.0%
TGTCAATCCGATTCAATTCG+AGG + tig0021354:42243-42262 Msa1390500:CDS 40.0%
CAATGCACCTCGAATTGAAT+CGG - tig0021354:42253-42272 None:intergenic 40.0%
TCTGAGTGGGAAAAAATGGT+AGG - tig0021354:42343-42362 None:intergenic 40.0%
GGAATCTGAGTGGGAAAAAA+TGG - tig0021354:42347-42366 None:intergenic 40.0%
TGCATTCACTTCAACAAGCT+GGG - tig0021354:42376-42395 None:intergenic 40.0%
AGTAAATGGTTCTCCGAAAG+TGG + tig0021354:42408-42427 Msa1390500:CDS 40.0%
GTAAATGGTTCTCCGAAAGT+GGG + tig0021354:42409-42428 Msa1390500:CDS 40.0%
GCAATCAGTTTCACGTTATG+TGG + tig0021354:42556-42575 Msa1390500:intron 40.0%
GAAAATCCTGTTTATCCCAG+TGG + tig0021354:42711-42730 Msa1390500:intron 40.0%
AAAGTTATGCCCATACCACT+GGG - tig0021354:42729-42748 None:intergenic 40.0%
AAAAGTTATGCCCATACCAC+TGG - tig0021354:42730-42749 None:intergenic 40.0%
TAGAGGATTATTATGCTGGG+AGG + tig0021354:42872-42891 Msa1390500:intron 40.0%
TACCAAGTCCAGGATAAAGA+TGG - tig0021354:42926-42945 None:intergenic 40.0%
!!! TGTTTTGATTTCCTGTGGGA+GGG + tig0021354:42969-42988 Msa1390500:intron 40.0%
!! GGAGGGTATTCAGGAAAAAT+AGG + tig0021354:42986-43005 Msa1390500:intron 40.0%
TGATGCTGGATGGTTTCTTA+TGG + tig0021354:43257-43276 Msa1390500:intron 40.0%
GTACATAGGTTCAGAGTTTC+AGG - tig0021354:43285-43304 None:intergenic 40.0%
AAACTTAGTGGGATAGGGTT+TGG - tig0021354:43335-43354 None:intergenic 40.0%
AAACCCTATCCCACTAAGTT+TGG + tig0021354:43334-43353 Msa1390500:intron 40.0%
! ATGTACCGACCAAACTTAGT+GGG - tig0021354:43346-43365 None:intergenic 40.0%
! TACTGAGTTGGACCGAAATA+TGG - tig0021354:43402-43421 None:intergenic 40.0%
GTATCATTTAGGTGGGCATT+TGG + tig0021354:44039-44058 Msa1390500:intron 40.0%
CAAGAAATGGTAGAGGAAGA+AGG + tig0021354:44308-44327 Msa1390500:CDS 40.0%
!!! GGTATTTGTTTTGATCGGTG+AGG + tig0021354:44337-44356 Msa1390500:intron 40.0%
CCGAATAGAATCAGAAGGTT+CGG - tig0021354:44491-44510 None:intergenic 40.0%
CCGAACCTTCTGATTCTATT+CGG + tig0021354:44488-44507 Msa1390500:CDS 40.0%
CGAACCTTCTGATTCTATTC+GGG + tig0021354:44489-44508 Msa1390500:CDS 40.0%
TCCAACATTACTGCTGCTAT+CGG + tig0021354:44758-44777 Msa1390500:CDS 40.0%
! AGATCTAGCTTCCCTTAATG+AGG + tig0021354:44924-44943 Msa1390500:intron 40.0%
CAGACAAACAATAACATGCC+TGG + tig0021354:45040-45059 Msa1390500:intron 40.0%
AACAATAACATGCCTGGATC+TGG + tig0021354:45046-45065 Msa1390500:intron 40.0%
GTAAGGTTAATTCCAGATCC+AGG - tig0021354:45061-45080 None:intergenic 40.0%
AGGTTGACCTAAAGATTGTG+AGG - tig0021354:45670-45689 None:intergenic 40.0%
AAGCTTCGCTTACATTAGTC+AGG - tig0021354:45863-45882 None:intergenic 40.0%
AAGTTAGTATTGCTAGCTCC+TGG - tig0021354:45993-46012 None:intergenic 40.0%
TGATCTCAGGGAGATTAAGT+TGG + tig0021354:46016-46035 Msa1390500:three_prime_UTR 40.0%
GATCTCAGGGAGATTAAGTT+GGG + tig0021354:46017-46036 Msa1390500:three_prime_UTR 40.0%
AACGAGTTTAGGCTCAATCA+TGG + tig0021354:46068-46087 Msa1390500:three_prime_UTR 40.0%
ACGAGTTTAGGCTCAATCAT+GGG + tig0021354:46069-46088 Msa1390500:three_prime_UTR 40.0%
AAAACAAGTCCTAAGACTCC+GGG - tig0021354:46103-46122 None:intergenic 40.0%
GAAAACAAGTCCTAAGACTC+CGG - tig0021354:46104-46123 None:intergenic 40.0%
GAGTATAGACGGTCATGTAT+TGG + tig0021354:46166-46185 Msa1390500:three_prime_UTR 40.0%
CATCAATTCAAGTGCTTCAC+TGG - tig0021354:46203-46222 None:intergenic 40.0%
GAATTGATGAAGGTGATGCA+TGG + tig0021354:46214-46233 Msa1390500:three_prime_UTR 40.0%
!!! AGCTAGCTTTTGTTCAAGAG+GGG + tig0021354:46296-46315 Msa1390500:three_prime_UTR 40.0%
ATCCCACAACAAGGACAAAC+TGG + tig0021354:39686-39705 Msa1390500:five_prime_UTR 45.0%
TCCCACAACAAGGACAAACT+GGG + tig0021354:39687-39706 Msa1390500:five_prime_UTR 45.0%
TGGCAGTAGAAGTCAAGTCA+TGG + tig0021354:39817-39836 Msa1390500:five_prime_UTR 45.0%
GGCAGTAGAAGTCAAGTCAT+GGG + tig0021354:39818-39837 Msa1390500:five_prime_UTR 45.0%
AACGAAGGGGGTAAGAAAAG+TGG - tig0021354:39902-39921 None:intergenic 45.0%
TTCTCCTAGTCCAATGGAGA+CGG + tig0021354:39968-39987 Msa1390500:CDS 45.0%
! ATTTTATCCTCCGGTGGAAG+AGG - tig0021354:40068-40087 None:intergenic 45.0%
! ACGAGAATTTTATCCTCCGG+TGG - tig0021354:40074-40093 None:intergenic 45.0%
! GGGACGAGAATTTTATCCTC+CGG - tig0021354:40077-40096 None:intergenic 45.0%
GAGGATAAAATTCTCGTCCC+TGG + tig0021354:40077-40096 Msa1390500:CDS 45.0%
!! TAGAGAGAGTGGAAGTACCA+GGG - tig0021354:40097-40116 None:intergenic 45.0%
!! TTAGAGAGAGTGGAAGTACC+AGG - tig0021354:40098-40117 None:intergenic 45.0%
TGAATTGAAGCTGTGCTGGA+AGG - tig0021354:40206-40225 None:intergenic 45.0%
ATCGTGAATTGAAGCTGTGC+TGG - tig0021354:40210-40229 None:intergenic 45.0%
AGATTATTACCCCTCAACGG+CGG - tig0021354:40240-40259 None:intergenic 45.0%
! GTTTTGTGTGAGGGGGTAAT+TGG + tig0021354:40328-40347 Msa1390500:intron 45.0%
TGCAAGAAAGGGTTCGTCAA+GGG - tig0021354:40487-40506 None:intergenic 45.0%
GCCTGTAGTACATGTCTTTC+AGG + tig0021354:41082-41101 Msa1390500:CDS 45.0%
CTTTGACAGCTTAGCGAAGA+AGG + tig0021354:41643-41662 Msa1390500:intron 45.0%
TCAGAGCTGATATCCTCACA+CGG - tig0021354:41670-41689 None:intergenic 45.0%
! TGTGAGGATATCAGCTCTGA+TGG + tig0021354:41670-41689 Msa1390500:CDS 45.0%
! GTCTAAAGCAAAGGTTGCTG+CGG + tig0021354:41872-41891 Msa1390500:CDS 45.0%
CGGTTCCATGAAACAAGGAA+TGG - tig0021354:41940-41959 None:intergenic 45.0%
GTGCATTCACTTCAACAAGC+TGG - tig0021354:42377-42396 None:intergenic 45.0%
AGTTTCACGTTATGTGGGCT+GGG + tig0021354:42562-42581 Msa1390500:intron 45.0%
AGCTAGGAAAACCCACTGTT+TGG + tig0021354:42662-42681 Msa1390500:intron 45.0%
TCCTGTTTATCCCAGTGGTA+TGG + tig0021354:42716-42735 Msa1390500:intron 45.0%
CCTGTTTATCCCAGTGGTAT+GGG + tig0021354:42717-42736 Msa1390500:intron 45.0%
TGCCATCTTTATCCTGGACT+TGG + tig0021354:42921-42940 Msa1390500:intron 45.0%
!!! GTGTTTTGATTTCCTGTGGG+AGG + tig0021354:42968-42987 Msa1390500:intron 45.0%
GCTTAAGCAGAAGATGATGC+TGG + tig0021354:43243-43262 Msa1390500:intron 45.0%
AAGCAGAAGATGATGCTGGA+TGG + tig0021354:43247-43266 Msa1390500:intron 45.0%
CGACCAAACTTAGTGGGATA+GGG - tig0021354:43340-43359 None:intergenic 45.0%
CCTATCCCACTAAGTTTGGT+CGG + tig0021354:43338-43357 Msa1390500:intron 45.0%
! CATGTACCGACCAAACTTAG+TGG - tig0021354:43347-43366 None:intergenic 45.0%
CACTAAGTTTGGTCGGTACA+TGG + tig0021354:43345-43364 Msa1390500:intron 45.0%
TAGTATGGTAGTAGAGGCAG+AGG - tig0021354:43473-43492 None:intergenic 45.0%
ACAAAACTCCCACCATGACT+AGG + tig0021354:43594-43613 Msa1390500:intron 45.0%
GGAATTGACCTAGTCATGGT+GGG - tig0021354:43605-43624 None:intergenic 45.0%
TGGAATTGACCTAGTCATGG+TGG - tig0021354:43606-43625 None:intergenic 45.0%
GGTTGGAATTGACCTAGTCA+TGG - tig0021354:43609-43628 None:intergenic 45.0%
TGAAGAGGATGCCACATGTT+AGG + tig0021354:43768-43787 Msa1390500:intron 45.0%
GAAGAGGATGCCACATGTTA+GGG + tig0021354:43769-43788 Msa1390500:intron 45.0%
!!! TGTAGTCTGCCATTTTTCCC+TGG + tig0021354:43943-43962 Msa1390500:intron 45.0%
! GCTAGAAAAGCTGCTTTGTC+TGG + tig0021354:44463-44482 Msa1390500:CDS 45.0%
AGGGAGTTTATTCATGCAGG+GGG - tig0021354:44534-44553 None:intergenic 45.0%
GAGGGAGTTTATTCATGCAG+GGG - tig0021354:44535-44554 None:intergenic 45.0%
GGAGGGAGTTTATTCATGCA+GGG - tig0021354:44536-44555 None:intergenic 45.0%
AGCAGCAGTAATGTTGGATG+TGG - tig0021354:44756-44775 None:intergenic 45.0%
ACCGATAGCAGCAGTAATGT+TGG - tig0021354:44762-44781 None:intergenic 45.0%
TGCAGGAACTTATGCGTACA+GGG + tig0021354:45335-45354 Msa1390500:CDS 45.0%
GATAGGTCTCAATCTTCTCC+CGG + tig0021354:45381-45400 Msa1390500:intron 45.0%
CTGTGTTTGATCTGTCCACA+GGG + tig0021354:45707-45726 Msa1390500:intron 45.0%
AGTGCAGCATGTGCCAAAAA+TGG - tig0021354:45761-45780 None:intergenic 45.0%
CAAGTGCTTCACTGGCAATA+TGG - tig0021354:46195-46214 None:intergenic 45.0%
ATTACTGGTGGCCTATTCTC+TGG - tig0021354:46253-46272 None:intergenic 45.0%
TCATCCTCGATCCCACAACA+AGG + tig0021354:39677-39696 Msa1390500:five_prime_UTR 50.0%
! TTGTCCTTGTTGTGGGATCG+AGG - tig0021354:39684-39703 None:intergenic 50.0%
! CCCCAGTTTGTCCTTGTTGT+GGG - tig0021354:39691-39710 None:intergenic 50.0%
CCCACAACAAGGACAAACTG+GGG + tig0021354:39688-39707 Msa1390500:five_prime_UTR 50.0%
TCCCCAGTTTGTCCTTGTTG+TGG - tig0021354:39692-39711 None:intergenic 50.0%
GATGCTTGCGAGTTGCAACT+GGG - tig0021354:39937-39956 None:intergenic 50.0%
TGATGCTTGCGAGTTGCAAC+TGG - tig0021354:39938-39957 None:intergenic 50.0%
GAGCACTTCTCCTAGTCCAA+TGG + tig0021354:39962-39981 Msa1390500:CDS 50.0%
AACCCTACGACCGACCAAAA+CGG + tig0021354:39996-40015 Msa1390500:CDS 50.0%
AGGTGAACGTTGGGAAGCTA+CGG - tig0021354:40024-40043 None:intergenic 50.0%
TGGTGGTAGAGGTGAACGTT+GGG - tig0021354:40033-40052 None:intergenic 50.0%
ATGGTGGTAGAGGTGAACGT+TGG - tig0021354:40034-40053 None:intergenic 50.0%
! CTATCGGGTTCTGTGTTGCT+TGG + tig0021354:40380-40399 Msa1390500:intron 50.0%
AAAGGGTTCGTCAAGGGGAA+CGG - tig0021354:40481-40500 None:intergenic 50.0%
GCAAGAAAGGGTTCGTCAAG+GGG - tig0021354:40486-40505 None:intergenic 50.0%
CTGCAAGAAAGGGTTCGTCA+AGG - tig0021354:40488-40507 None:intergenic 50.0%
GGAGTGGCAAGATATGGAAG+TGG + tig0021354:40611-40630 Msa1390500:intron 50.0%
! GCTTCAATCGGTTCATCTGC+TGG + tig0021354:41261-41280 Msa1390500:intron 50.0%
! CTGACCCACAGCTTCTAGAA+TGG + tig0021354:41395-41414 Msa1390500:intron 50.0%
!! CTCACCGGTTCCATGAAACA+AGG - tig0021354:41945-41964 None:intergenic 50.0%
! ATTCTTTTGCATGGACCCCC+TGG + tig0021354:42179-42198 Msa1390500:CDS 50.0%
! TTCTTTTGCATGGACCCCCT+GGG + tig0021354:42180-42199 Msa1390500:CDS 50.0%
AAGACGTCTTTCCAGTCCCA+GGG - tig0021354:42199-42218 None:intergenic 50.0%
AAAGACGTCTTTCCAGTCCC+AGG - tig0021354:42200-42219 None:intergenic 50.0%
TTTCCCACTCAGATTCCCAC+AGG + tig0021354:42350-42369 Msa1390500:intron 50.0%
GCATACCAGCTTCCCACTTT+CGG - tig0021354:42424-42443 None:intergenic 50.0%
CAGTTTCACGTTATGTGGGC+TGG + tig0021354:42561-42580 Msa1390500:intron 50.0%
! GTTTCACGTTATGTGGGCTG+GGG + tig0021354:42563-42582 Msa1390500:intron 50.0%
!! TTTCACGTTATGTGGGCTGG+GGG + tig0021354:42564-42583 Msa1390500:intron 50.0%
CCCATACCACTGGGATAAAC+AGG - tig0021354:42720-42739 None:intergenic 50.0%
CGGACAATACTACCAAGTCC+AGG - tig0021354:42936-42955 None:intergenic 50.0%
!! TTTCCTGTGGGAGGGTATTC+AGG + tig0021354:42977-42996 Msa1390500:intron 50.0%
TTTCCTGAATACCCTCCCAC+AGG - tig0021354:42983-43002 None:intergenic 50.0%
CCGACCAAACTTAGTGGGAT+AGG - tig0021354:43341-43360 None:intergenic 50.0%
!! GGTGGGAGTTTTGTAGAACC+TGG - tig0021354:43588-43607 None:intergenic 50.0%
ATCAACCGTGCCCTAACATG+TGG - tig0021354:43782-43801 None:intergenic 50.0%
GGTAGAGGAAGAAGGCAATC+TGG + tig0021354:44316-44335 Msa1390500:CDS 50.0%
AGGCTTTCGACTTCATCTGC+AGG - tig0021354:44436-44455 None:intergenic 50.0%
!! CAGCTTTTCTAGCAGCAGCA+AGG - tig0021354:44456-44475 None:intergenic 50.0%
GGGAGGGAGTTTATTCATGC+AGG - tig0021354:44537-44556 None:intergenic 50.0%
CAAAAAATCGTGGGGAGGGA+GGG - tig0021354:44553-44572 None:intergenic 50.0%
TCAAAAAATCGTGGGGAGGG+AGG - tig0021354:44554-44573 None:intergenic 50.0%
GGAGTGGTGTTCCTAACTAG+TGG - tig0021354:45119-45138 None:intergenic 50.0%
TCATACCGGGCTTGAAGAGT+TGG - tig0021354:45298-45317 None:intergenic 50.0%
GTGCAGGAACTTATGCGTAC+AGG + tig0021354:45334-45353 Msa1390500:CDS 50.0%
! TGAAACTGCAGAGGCATGTG+AGG + tig0021354:45611-45630 Msa1390500:CDS 50.0%
GCTGTGTTTGATCTGTCCAC+AGG + tig0021354:45706-45725 Msa1390500:intron 50.0%
ATCTGTCCACAGGGAATGAG+TGG + tig0021354:45716-45735 Msa1390500:intron 50.0%
CAATCATGGGATCAGTGTCC+CGG + tig0021354:46082-46101 Msa1390500:three_prime_UTR 50.0%
! TGGGTCTCTGAGAACGAAGG+GGG - tig0021354:39914-39933 None:intergenic 55.0%
! GTGGGTCTCTGAGAACGAAG+GGG - tig0021354:39915-39934 None:intergenic 55.0%
! GGTGGGTCTCTGAGAACGAA+GGG - tig0021354:39916-39935 None:intergenic 55.0%
CTTGCGAGTTGCAACTGGGT+GGG - tig0021354:39933-39952 None:intergenic 55.0%
TGCTCCGTCTCCATTGGACT+AGG - tig0021354:39975-39994 None:intergenic 55.0%
! GGGTTTTGCTCCGTCTCCAT+TGG - tig0021354:39981-40000 None:intergenic 55.0%
TTATCCTCCGGTGGAAGAGG+AGG - tig0021354:40065-40084 None:intergenic 55.0%
ATTACCCCTCAACGGCGGAA+CGG - tig0021354:40235-40254 None:intergenic 55.0%
TCGTCAAGGGGAACGGGAAT+CGG - tig0021354:40474-40493 None:intergenic 55.0%
AAGGGTTCGTCAAGGGGAAC+GGG - tig0021354:40480-40499 None:intergenic 55.0%
!! CAAAAGGGCATCTGGACGTG+CGG - tig0021354:40741-40760 None:intergenic 55.0%
TAGCGAAGAAGGACCGTGTG+AGG + tig0021354:41654-41673 Msa1390500:CDS 55.0%
AGACGTCTTTCCAGTCCCAG+GGG - tig0021354:42198-42217 None:intergenic 55.0%
CTTCAACAAGCTGGGCCTGT+GGG - tig0021354:42368-42387 None:intergenic 55.0%
ACTTCAACAAGCTGGGCCTG+TGG - tig0021354:42369-42388 None:intergenic 55.0%
GTTCTCCGAAAGTGGGAAGC+TGG + tig0021354:42416-42435 Msa1390500:CDS 55.0%
GGATGCCACATGTTAGGGCA+CGG + tig0021354:43774-43793 Msa1390500:intron 55.0%
! ACCGGGCTTGAAGAGTTGGT+GGG - tig0021354:45294-45313 None:intergenic 55.0%
TACCGGGCTTGAAGAGTTGG+TGG - tig0021354:45295-45314 None:intergenic 55.0%
! ACTGCAGAGGCATGTGAGGT+AGG + tig0021354:45615-45634 Msa1390500:intron 55.0%
GTCCACAGGGAATGAGTGGA+AGG + tig0021354:45720-45739 Msa1390500:intron 55.0%
GACCTTCCACTCATTCCCTG+TGG - tig0021354:45725-45744 None:intergenic 55.0%
GATCAGTGTCCCGGAGTCTT+AGG + tig0021354:46091-46110 Msa1390500:three_prime_UTR 55.0%
! GGGTGGGTCTCTGAGAACGA+AGG - tig0021354:39917-39936 None:intergenic 60.0%
GCTTGCGAGTTGCAACTGGG+TGG - tig0021354:39934-39953 None:intergenic 60.0%
!! CGCCGTTTTGGTCGGTCGTA+GGG - tig0021354:40001-40020 None:intergenic 60.0%
!! AGCTACGGCGCCGTTTTGGT+CGG - tig0021354:40009-40028 None:intergenic 60.0%
GATGTCCGTTCCGCCGTTGA+GGG + tig0021354:40227-40246 Msa1390500:CDS 60.0%
ATGTCCGTTCCGCCGTTGAG+GGG + tig0021354:40228-40247 Msa1390500:CDS 60.0%
GACGTCTTTCCAGTCCCAGG+GGG - tig0021354:42197-42216 None:intergenic 60.0%
GGGCCTGTGGGAATCTGAGT+GGG - tig0021354:42356-42375 None:intergenic 60.0%
TGGGCCTGTGGGAATCTGAG+TGG - tig0021354:42357-42376 None:intergenic 60.0%
! TTCATGCAGGGGGCGCAGAA+AGG - tig0021354:44524-44543 None:intergenic 60.0%
GCCCACCAACTCTTCAAGCC+CGG + tig0021354:45290-45309 Msa1390500:CDS 60.0%
!! GCGCCGTTTTGGTCGGTCGT+AGG - tig0021354:40002-40021 None:intergenic 65.0%
! GGGAAGCTACGGCGCCGTTT+TGG - tig0021354:40013-40032 None:intergenic 65.0%
! GGAGGGGGAGATGGTGGTAG+AGG - tig0021354:40044-40063 None:intergenic 65.0%
AGAGGAGGAGGGGGAGATGG+TGG - tig0021354:40050-40069 None:intergenic 65.0%
GGAAGAGGAGGAGGGGGAGA+TGG - tig0021354:40053-40072 None:intergenic 65.0%
TCCCCCTCCTCCTCTTCCAC+CGG + tig0021354:40055-40074 Msa1390500:CDS 65.0%
TCCGGTGGAAGAGGAGGAGG+GGG - tig0021354:40059-40078 None:intergenic 65.0%
CTCCGGTGGAAGAGGAGGAG+GGG - tig0021354:40060-40079 None:intergenic 65.0%
CCTCCGGTGGAAGAGGAGGA+GGG - tig0021354:40061-40080 None:intergenic 65.0%
TCCTCCGGTGGAAGAGGAGG+AGG - tig0021354:40062-40081 None:intergenic 65.0%
CGATGTCCGTTCCGCCGTTG+AGG + tig0021354:40226-40245 Msa1390500:CDS 65.0%
TTGCATGGACCCCCTGGGAC+TGG + tig0021354:42185-42204 Msa1390500:CDS 65.0%
! ATGCAGGGGGCGCAGAAAGG+AGG - tig0021354:44521-44540 None:intergenic 65.0%
CCCTCCTCCTCTTCCACCGG+AGG + tig0021354:40058-40077 Msa1390500:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0021354 gene 39641 46335 39641 ID=Msa1390500;Name=Msa1390500
tig0021354 mRNA 39641 46335 39641 ID=Msa1390500-mRNA-1;Parent=Msa1390500;Name=Msa1390500-mRNA-1;_AED=0.09;_eAED=0.09;_QI=319|1|1|1|0.85|0.86|15|352|460
tig0021354 exon 39641 40098 39641 ID=Msa1390500-mRNA-1:exon:12280;Parent=Msa1390500-mRNA-1
tig0021354 exon 40186 40249 40186 ID=Msa1390500-mRNA-1:exon:12281;Parent=Msa1390500-mRNA-1
tig0021354 exon 40434 40540 40434 ID=Msa1390500-mRNA-1:exon:12282;Parent=Msa1390500-mRNA-1
tig0021354 exon 41036 41103 41036 ID=Msa1390500-mRNA-1:exon:12283;Parent=Msa1390500-mRNA-1
tig0021354 exon 41652 41755 41652 ID=Msa1390500-mRNA-1:exon:12284;Parent=Msa1390500-mRNA-1
tig0021354 exon 41855 41959 41855 ID=Msa1390500-mRNA-1:exon:12285;Parent=Msa1390500-mRNA-1
tig0021354 exon 42175 42264 42175 ID=Msa1390500-mRNA-1:exon:12286;Parent=Msa1390500-mRNA-1
tig0021354 exon 42362 42437 42362 ID=Msa1390500-mRNA-1:exon:12287;Parent=Msa1390500-mRNA-1
tig0021354 exon 44284 44353 44284 ID=Msa1390500-mRNA-1:exon:12288;Parent=Msa1390500-mRNA-1
tig0021354 exon 44440 44510 44440 ID=Msa1390500-mRNA-1:exon:12289;Parent=Msa1390500-mRNA-1
tig0021354 exon 44689 44779 44689 ID=Msa1390500-mRNA-1:exon:12290;Parent=Msa1390500-mRNA-1
tig0021354 exon 45248 45375 45248 ID=Msa1390500-mRNA-1:exon:12291;Parent=Msa1390500-mRNA-1
tig0021354 exon 45504 45632 45504 ID=Msa1390500-mRNA-1:exon:12292;Parent=Msa1390500-mRNA-1
tig0021354 exon 45728 45869 45728 ID=Msa1390500-mRNA-1:exon:12293;Parent=Msa1390500-mRNA-1
tig0021354 exon 45985 46335 45985 ID=Msa1390500-mRNA-1:exon:12294;Parent=Msa1390500-mRNA-1
tig0021354 five_prime_UTR 39641 39959 39641 ID=Msa1390500-mRNA-1:five_prime_utr;Parent=Msa1390500-mRNA-1
tig0021354 CDS 39960 40098 39960 ID=Msa1390500-mRNA-1:cds;Parent=Msa1390500-mRNA-1
tig0021354 CDS 40186 40249 40186 ID=Msa1390500-mRNA-1:cds;Parent=Msa1390500-mRNA-1
tig0021354 CDS 40434 40540 40434 ID=Msa1390500-mRNA-1:cds;Parent=Msa1390500-mRNA-1
tig0021354 CDS 41036 41103 41036 ID=Msa1390500-mRNA-1:cds;Parent=Msa1390500-mRNA-1
tig0021354 CDS 41652 41755 41652 ID=Msa1390500-mRNA-1:cds;Parent=Msa1390500-mRNA-1
tig0021354 CDS 41855 41959 41855 ID=Msa1390500-mRNA-1:cds;Parent=Msa1390500-mRNA-1
tig0021354 CDS 42175 42264 42175 ID=Msa1390500-mRNA-1:cds;Parent=Msa1390500-mRNA-1
tig0021354 CDS 42362 42437 42362 ID=Msa1390500-mRNA-1:cds;Parent=Msa1390500-mRNA-1
tig0021354 CDS 44284 44353 44284 ID=Msa1390500-mRNA-1:cds;Parent=Msa1390500-mRNA-1
tig0021354 CDS 44440 44510 44440 ID=Msa1390500-mRNA-1:cds;Parent=Msa1390500-mRNA-1
tig0021354 CDS 44689 44779 44689 ID=Msa1390500-mRNA-1:cds;Parent=Msa1390500-mRNA-1
tig0021354 CDS 45248 45375 45248 ID=Msa1390500-mRNA-1:cds;Parent=Msa1390500-mRNA-1
tig0021354 CDS 45504 45632 45504 ID=Msa1390500-mRNA-1:cds;Parent=Msa1390500-mRNA-1
tig0021354 CDS 45728 45868 45728 ID=Msa1390500-mRNA-1:cds;Parent=Msa1390500-mRNA-1
tig0021354 three_prime_UTR 45869 45869 45869 ID=Msa1390500-mRNA-1:three_prime_utr;Parent=Msa1390500-mRNA-1
tig0021354 three_prime_UTR 45985 46335 45985 ID=Msa1390500-mRNA-1:three_prime_utr;Parent=Msa1390500-mRNA-1
Gene Sequence

>Msa1390500

ATGAGCACTTCTCCTAGTCCAATGGAGACGGAGCAAAACCCTACGACCGACCAAAACGGCGCCGTAGCTTCCCAACGTTCACCTCTACCACCATCTCCCCCTCCTCCTCTTCCACCGGAGGATAAAATTCTCGTCCCTGTCGAGGTTTGCTTAAAACCTTCCAGCACAGCTTCAATTCACGATGTCCGTTCCGCCGTTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATAATGGTGGACCGATTCCCGTTCCCCTTGACGAACCCTTTCTTGCAGATAATGTGCAAAGAATTTGCGTTTGTGATACAGGTGAAGGGATGCAGAATGATAACGTTCTTTTGTTCTGGCAAGTCAAGCCTGTAGTACATGTCTTTCAGCTTAGCGAAGAAGGACCGTGTGAGGATATCAGCTCTGATGGCCAGTCTTCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCCTAATATATGAATCTGGTCTAAAGCAAAGGTTGCTGCGGTATGCAGCAAGTGCTTTACTCTTCACTGAAAAGGCAGTTGATCCATTCCTTGTTTCATGGAACCGCATAATTCTTTTGCATGGACCCCCTGGGACTGGAAAGACGTCTTTATGTAAAGCATTAGCTCAGAAACTGTCAATCCGATTCAATTCGAGATTCCCACAGGCCCAGCTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGGAAGCTGGTAGCAAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAGGCAATCTGGTATTTGTTTTGATCGATGAAGTCGAAAGCCTTGCTGCTGCTAGAAAAGCTGCTTTGTCTGGTTCCGAACCTTCTGATTCTATTCGGGTTGTCAATGCATTATTAACTCAGATGGATAAGTTAAAATCATCTCCAAATGTGATAATTCTAACCACATCCAACATTACTGCTGCTATCGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGCCCACCAACTCTTCAAGCCCGGTATGAAATATTAAGGTCTTGTGTGCAGGAACTTATGCGTACAGGGATATTAACTAATTTTGAGGATTGTAAGAATATCGTGCTTCCAAATTATGCTAGTGCAAAACAGAGAACGAACGCACCAGATTTTCATGAAGCTACTACATTCATGCAACTGTGCAAGAAATTAGTTGAAACTGCAGAGGCATGTGAGGGAATGAGTGGAAGGTCTCTCAGAAAGCTTCCATTTTTGGCACATGCTGCACTTGCAAATCCTTTTGATTGCAATCCTATCAAGTTCTTATGTACAATGATAGATACAGCAAAGAGGGAGCGTTCTGAGCTTCCTGACTAA
Protein sequence

>Msa1390500

MSTSPSPMETEQNPTTDQNGAVASQRSPLPPSPPPPLPPEDKILVPVEVCLKPSSTASIHDVRSAVEGMLEKRSLSYNGGPIPVPLDEPFLADNVQRICVCDTGEGMQNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKAVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRFPQAQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEEGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCVQELMRTGILTNFEDCKNIVLPNYASAKQRTNAPDFHEATTFMQLCKKLVETAEACEGMSGRSLRKLPFLAHAALANPFDCNPIKFLCTMIDTAKRERSELPD*