Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511570 | XP_013461026.1 | 99.436 | 532 | 3 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1068 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511570 | sp|Q27GI3|NAT6_ARATH | 85.902 | 532 | 75 | 0 | 1 | 532 | 1 | 532 | 0.0 | 951 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511570 | A0A072VA43 | 99.436 | 532 | 3 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1068 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0465610 | Msa0511570 | 0.958826 | 8.985894e-117 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511570 | MtrunA17_Chr3g0117941 | 99.436 | 532 | 3 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1068 |
| Msa0511570 | MtrunA17_Chr4g0059331 | 90.414 | 532 | 51 | 0 | 1 | 532 | 1 | 532 | 0.0 | 991 |
| Msa0511570 | MtrunA17_Chr8g0364611 | 80.863 | 533 | 101 | 1 | 1 | 532 | 1 | 533 | 0.0 | 891 |
| Msa0511570 | MtrunA17_Chr5g0414131 | 76.046 | 526 | 125 | 1 | 8 | 532 | 13 | 538 | 0.0 | 836 |
| Msa0511570 | MtrunA17_Chr3g0134911 | 55.437 | 561 | 205 | 4 | 9 | 532 | 33 | 585 | 0.0 | 643 |
| Msa0511570 | MtrunA17_Chr1g0207021 | 59.091 | 528 | 213 | 2 | 4 | 531 | 2 | 526 | 0.0 | 641 |
| Msa0511570 | MtrunA17_Chr8g0379171 | 59.459 | 518 | 208 | 1 | 13 | 530 | 7 | 522 | 0.0 | 632 |
| Msa0511570 | MtrunA17_Chr5g0405471 | 57.196 | 535 | 211 | 2 | 13 | 532 | 31 | 562 | 0.0 | 626 |
| Msa0511570 | MtrunA17_Chr2g0284061 | 58.046 | 522 | 217 | 1 | 9 | 530 | 3 | 522 | 0.0 | 625 |
| Msa0511570 | MtrunA17_Chr3g0119521 | 59.223 | 515 | 207 | 2 | 17 | 530 | 6 | 518 | 0.0 | 612 |
| Msa0511570 | MtrunA17_Chr1g0154001 | 52.632 | 513 | 241 | 1 | 19 | 531 | 36 | 546 | 0.0 | 535 |
| Msa0511570 | MtrunA17_Chr8g0367361 | 35.046 | 545 | 312 | 6 | 17 | 529 | 234 | 768 | 1.58e-107 | 338 |
| Msa0511570 | MtrunA17_Chr5g0412181 | 36.486 | 518 | 291 | 4 | 40 | 525 | 182 | 693 | 9.81e-104 | 327 |
| Msa0511570 | MtrunA17_Chr2g0320981 | 34.799 | 523 | 297 | 6 | 43 | 529 | 164 | 678 | 4.45e-94 | 301 |
| Msa0511570 | MtrunA17_Chr4g0027121 | 34.857 | 525 | 295 | 7 | 43 | 529 | 171 | 686 | 5.36e-93 | 298 |
| Msa0511570 | MtrunA17_Chr2g0332871 | 32.400 | 500 | 300 | 6 | 46 | 529 | 166 | 643 | 2.31e-83 | 272 |
| Msa0511570 | MtrunA17_Chr8g0379181 | 50.909 | 55 | 27 | 0 | 411 | 465 | 13 | 67 | 4.43e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511570 | AT5G62890.1 | 85.902 | 532 | 75 | 0 | 1 | 532 | 1 | 532 | 0.0 | 951 |
| Msa0511570 | AT5G62890.2 | 85.902 | 532 | 75 | 0 | 1 | 532 | 1 | 532 | 0.0 | 951 |
| Msa0511570 | AT5G62890.3 | 85.902 | 532 | 75 | 0 | 1 | 532 | 1 | 532 | 0.0 | 951 |
| Msa0511570 | AT5G49990.2 | 80.038 | 526 | 105 | 0 | 7 | 532 | 3 | 528 | 0.0 | 862 |
| Msa0511570 | AT5G49990.3 | 80.038 | 526 | 105 | 0 | 7 | 532 | 3 | 528 | 0.0 | 862 |
| Msa0511570 | AT5G49990.1 | 80.038 | 526 | 105 | 0 | 7 | 532 | 3 | 528 | 0.0 | 862 |
| Msa0511570 | AT5G49990.4 | 80.038 | 526 | 105 | 0 | 7 | 532 | 3 | 528 | 0.0 | 862 |
| Msa0511570 | AT1G60030.1 | 76.762 | 525 | 122 | 0 | 8 | 532 | 14 | 538 | 0.0 | 851 |
| Msa0511570 | AT5G62890.4 | 85.435 | 460 | 67 | 0 | 1 | 460 | 1 | 460 | 0.0 | 809 |
| Msa0511570 | AT1G10540.1 | 68.401 | 538 | 163 | 3 | 1 | 531 | 1 | 538 | 0.0 | 777 |
| Msa0511570 | AT1G49960.1 | 60.920 | 522 | 204 | 0 | 10 | 531 | 4 | 525 | 0.0 | 649 |
| Msa0511570 | AT2G34190.1 | 58.687 | 518 | 212 | 1 | 13 | 530 | 7 | 522 | 0.0 | 632 |
| Msa0511570 | AT1G65550.1 | 55.009 | 529 | 229 | 2 | 10 | 531 | 14 | 540 | 0.0 | 616 |
| Msa0511570 | AT2G05760.1 | 57.087 | 515 | 218 | 2 | 17 | 530 | 6 | 518 | 0.0 | 604 |
| Msa0511570 | AT1G10540.2 | 67.784 | 388 | 118 | 3 | 1 | 381 | 1 | 388 | 0.0 | 543 |
| Msa0511570 | AT2G26510.1 | 51.257 | 517 | 245 | 3 | 18 | 531 | 36 | 548 | 1.40e-180 | 519 |
| Msa0511570 | AT5G25420.1 | 49.210 | 443 | 155 | 5 | 10 | 452 | 26 | 398 | 2.00e-143 | 419 |
| Msa0511570 | AT2G26510.3 | 52.861 | 367 | 167 | 2 | 18 | 381 | 36 | 399 | 1.65e-126 | 376 |
| Msa0511570 | AT2G26510.2 | 52.260 | 354 | 163 | 2 | 18 | 368 | 36 | 386 | 8.05e-120 | 360 |
| Msa0511570 | AT2G27810.1 | 35.509 | 521 | 297 | 5 | 43 | 529 | 186 | 701 | 9.87e-93 | 298 |
| Msa0511570 | AT4G38050.1 | 35.249 | 522 | 300 | 5 | 40 | 529 | 189 | 704 | 2.55e-92 | 297 |
| Msa0511570 | AT2G27810.4 | 34.312 | 545 | 295 | 7 | 43 | 529 | 186 | 725 | 3.77e-88 | 287 |
| Msa0511570 | AT2G27810.2 | 39.012 | 405 | 228 | 3 | 43 | 429 | 186 | 589 | 1.26e-78 | 258 |
| Msa0511570 | AT2G27810.3 | 39.106 | 358 | 199 | 3 | 43 | 382 | 186 | 542 | 7.05e-68 | 228 |
Find 152 sgRNAs with CRISPR-Local
Find 402 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCACTGTGTAGGAAAATT+TGG | 0.153225 | 3_4:+61170263 | Msa0511570:intron |
| TTGGTTTCTCTTGTTGGTTT+TGG | 0.211154 | 3_4:+61167849 | Msa0511570:CDS |
| GGGGTTGGCATTCTTCTATC+TGG | 0.251901 | 3_4:+61169920 | Msa0511570:CDS |
| CAGAGAAAATGCTGGTCTTT+TGG | 0.254875 | 3_4:+61170075 | Msa0511570:intron |
| GTTCCATTGGTTTCTCTTGT+TGG | 0.266604 | 3_4:+61167843 | Msa0511570:CDS |
| ATTAGGCTTCTCTATATTCT+TGG | 0.267261 | 3_4:+61170521 | Msa0511570:CDS |
| ACATTGGTGCAAACACTCTT+TGG | 0.307293 | 3_4:+61166753 | Msa0511570:CDS |
| ATTCTTCTATCTGGATTGTT+TGG | 0.309588 | 3_4:+61169929 | Msa0511570:CDS |
| TCACGATTACCTGCAGTAAT+TGG | 0.310968 | 3_4:+61166777 | Msa0511570:CDS |
| GCAGCTGAGGCCATACTTCT+TGG | 0.316014 | 3_4:+61166508 | Msa0511570:intron |
| TTTAGAACAAAGTTCATATT+AGG | 0.323198 | 3_4:+61170504 | Msa0511570:CDS |
| ACAAGAGCGATAAGATAAAA+TGG | 0.339029 | 3_4:+61171062 | Msa0511570:three_prime_UTR |
| GAGCTTTCATTGCTGTATAT+AGG | 0.350680 | 3_4:+61169682 | Msa0511570:CDS |
| TGCCTATTCTTTGCTTATGT+TGG | 0.351940 | 3_4:+61170332 | Msa0511570:CDS |
| TTAGGCTTCTCTATATTCTT+GGG | 0.353632 | 3_4:+61170522 | Msa0511570:CDS |
| GCCACCTTCTATTCTTAGTC+GGG | 0.361786 | 3_4:+61169725 | Msa0511570:CDS |
| TACTAGGCTTTAGTGGCCTT+TGG | 0.362108 | 3_4:+61167552 | Msa0511570:CDS |
| TATACAGCAATCAATGGTTA+TGG | 0.366024 | 3_4:+61170573 | Msa0511570:CDS |
| CAAATAGTACTAGGCTTTAG+TGG | 0.377969 | 3_4:+61167545 | Msa0511570:CDS |
| CAATCAAAAGCATTTGTTGC+GGG | 0.379620 | 3_4:+61170857 | Msa0511570:CDS |
| GCTCCCCATTGAAAGGGATA+TGG | 0.382055 | 3_4:-61168943 | None:intergenic |
| CACTGCTCTTGTTCCTCAGA+TGG | 0.382385 | 3_4:+61166576 | Msa0511570:CDS |
| AAGCAGAGTTTCAATTACTT+TGG | 0.386238 | 3_4:-61166712 | None:intergenic |
| TAGACAACACTTTACATAAG+AGG | 0.388088 | 3_4:+61170897 | Msa0511570:CDS |
| GTAATGCAGTAAGAAATATT+TGG | 0.393915 | 3_4:-61165525 | None:intergenic |
| GAAGATAATGAGGGCAGTCC+AGG | 0.395646 | 3_4:+61167496 | Msa0511570:CDS |
| ATATTTGGTAGTTGATCCTT+TGG | 0.395677 | 3_4:-61165510 | None:intergenic |
| TCTATTCTTAGTCGGGGTAT+TGG | 0.399112 | 3_4:+61169732 | Msa0511570:CDS |
| TTTCGGTGGAGAACCGTTAT+AGG | 0.402300 | 3_4:-61168297 | None:intergenic |
| ACTTTGTTCTAAAACTGTTA+AGG | 0.406816 | 3_4:-61170494 | None:intergenic |
| ACTGCCAGAGCTTATATTGC+TGG | 0.410871 | 3_4:+61168006 | Msa0511570:CDS |
| ATGTTGAAATCCAAGAAGTA+TGG | 0.411526 | 3_4:-61166518 | None:intergenic |
| TCCTTTGGTGGATGTGGTTG+TGG | 0.413545 | 3_4:-61165495 | None:intergenic |
| TACAATGCAGCAATGATTGC+AGG | 0.417508 | 3_4:-61170308 | None:intergenic |
| TGCCACCTTCTATTCTTAGT+CGG | 0.437110 | 3_4:+61169724 | Msa0511570:CDS |
| GTGCCACATGTGTTGCATTC+GGG | 0.438570 | 3_4:+61168191 | Msa0511570:CDS |
| GAGTTCCATATCCCTTTCAA+TGG | 0.440675 | 3_4:+61168938 | Msa0511570:CDS |
| TCCACTTTCAGCTGTTCCAT+TGG | 0.444367 | 3_4:+61167830 | Msa0511570:CDS |
| AAATATTTGTTTAGATTGAA+AGG | 0.450377 | 3_4:-61171013 | None:intergenic |
| TAGTCGGGGTATTGGTTGGC+AGG | 0.453343 | 3_4:+61169740 | Msa0511570:CDS |
| GCTGTTCTACTCACTGTTGG+AGG | 0.454047 | 3_4:+61168272 | Msa0511570:CDS |
| GTTGCTAAATGTGTAGAGAT+TGG | 0.455062 | 3_4:+61167983 | Msa0511570:CDS |
| TCTTCTGATAAGACCTCAAT+CGG | 0.455463 | 3_4:-61166870 | None:intergenic |
| CATCTTCCACCTGTGTGGAC+TGG | 0.457011 | 3_4:-61170597 | None:intergenic |
| TCAACTCTTCAAATAGTACT+AGG | 0.457439 | 3_4:+61167536 | Msa0511570:CDS |
| AGTTGATCCTTTGGTGGATG+TGG | 0.457879 | 3_4:-61165501 | None:intergenic |
| TTGCTGCTTGTAGGCGGAGA+AGG | 0.458011 | 3_4:+61166689 | Msa0511570:intron |
| ATTGCTGGTATTTGTTTCAC+AGG | 0.458880 | 3_4:+61168021 | Msa0511570:CDS |
| CTGTTCTACTCACTGTTGGA+GGG | 0.460539 | 3_4:+61168273 | Msa0511570:CDS |
| GACTTGTAGATGCTGCTCCT+TGG | 0.462057 | 3_4:+61168351 | Msa0511570:CDS |
| TAAGAATAGAAGGTGGCAAT+GGG | 0.462513 | 3_4:-61169719 | None:intergenic |
| GATAAGACCTCAATCGGATC+TGG | 0.463050 | 3_4:-61166864 | None:intergenic |
| TACGTGACAGTTCAATGATA+TGG | 0.473040 | 3_4:+61170820 | Msa0511570:intron |
| AGAATAATTGAGATTGTCGT+TGG | 0.473319 | 3_4:-61166819 | None:intergenic |
| TGAGATTGTCGTTGGAACAT+AGG | 0.474228 | 3_4:-61166811 | None:intergenic |
| GAAGCTATGGCAGGAGGAGG+AGG | 0.475226 | 3_4:+61165450 | Msa0511570:exon |
| AGAGTTGTGCAGATATCTGC+TGG | 0.488720 | 3_4:+61170121 | Msa0511570:CDS |
| ATACCCCGACTAAGAATAGA+AGG | 0.488782 | 3_4:-61169729 | None:intergenic |
| TACCAACATAAGCAAAGAAT+AGG | 0.490475 | 3_4:-61170334 | None:intergenic |
| TTCTTAGTCGGGGTATTGGT+TGG | 0.491475 | 3_4:+61169736 | Msa0511570:CDS |
| CAGTCCACACAGGTGGAAGA+TGG | 0.492027 | 3_4:+61170598 | Msa0511570:CDS |
| AGTTCCATATCCCTTTCAAT+GGG | 0.492360 | 3_4:+61168939 | Msa0511570:CDS |
| TAGAGTGGAGACTACTCATA+TGG | 0.492995 | 3_4:-61171147 | None:intergenic |
| GATCTGGTTCATTACTGAAT+CGG | 0.493059 | 3_4:-61166848 | None:intergenic |
| GGATTGTTTGGAACAATTAG+CGG | 0.502285 | 3_4:+61169941 | Msa0511570:CDS |
| AATGATTGCAGGTGGGATAG+AGG | 0.502422 | 3_4:-61170297 | None:intergenic |
| TGTGCCACATGTGTTGCATT+CGG | 0.505553 | 3_4:+61168190 | Msa0511570:CDS |
| AGAAATTCAAGAAGATAATG+AGG | 0.505728 | 3_4:+61167486 | Msa0511570:intron |
| TATGCTGTTCTACTCACTGT+TGG | 0.507624 | 3_4:+61168269 | Msa0511570:CDS |
| TCCAGCACGATCAGTGCGGC+AGG | 0.509045 | 3_4:-61168330 | None:intergenic |
| ATGAATGCATTGCTTGGTCA+TGG | 0.513485 | 3_4:-61171312 | None:intergenic |
| GGACAAGTACAAGTCATTCA+AGG | 0.513945 | 3_4:+61170958 | Msa0511570:CDS |
| TCCTGCCGCACTGATCGTGC+TGG | 0.513982 | 3_4:+61168329 | Msa0511570:CDS |
| ACTGCTCTTGTTCCTCAGAT+GGG | 0.514976 | 3_4:+61166577 | Msa0511570:CDS |
| ATACAGCAATCAATGGTTAT+GGG | 0.516393 | 3_4:+61170574 | Msa0511570:CDS |
| GAGGGATTCATCTATTAGAA+AGG | 0.518790 | 3_4:+61170916 | Msa0511570:CDS |
| CTTGTTCCTCAGATGGGAGG+TGG | 0.523430 | 3_4:+61166583 | Msa0511570:CDS |
| ATCTTTCGTTGCTCTTGTAG+AGG | 0.524901 | 3_4:+61169008 | Msa0511570:CDS |
| TATTCACAATTGCAATTGTG+TGG | 0.525941 | 3_4:+61168243 | Msa0511570:CDS |
| CATCGGTTTAATTAATTGTG+CGG | 0.526651 | 3_4:+61171038 | Msa0511570:exon |
| TCTTATGTAAAGTGTTGTCT+AGG | 0.530549 | 3_4:-61170895 | None:intergenic |
| TTTCCCTGCAGAGAAAATGC+TGG | 0.530895 | 3_4:+61170067 | Msa0511570:intron |
| ACCAATGGAACAGCTGAAAG+TGG | 0.532981 | 3_4:-61167831 | None:intergenic |
| AGACAACACTTTACATAAGA+GGG | 0.533794 | 3_4:+61170898 | Msa0511570:CDS |
| ACTGTTGGAGGGGCCTATAA+CGG | 0.535674 | 3_4:+61168284 | Msa0511570:CDS |
| TTAGATTAAGAAGCTATGGC+AGG | 0.535979 | 3_4:+61165441 | Msa0511570:exon |
| ATCTGAGGAACAAGAGCAGT+GGG | 0.536762 | 3_4:-61166574 | None:intergenic |
| AATACCAGCAATATAAGCTC+TGG | 0.537388 | 3_4:-61168010 | None:intergenic |
| AATGAGTATACAGCAATCAA+TGG | 0.538381 | 3_4:+61170567 | Msa0511570:CDS |
| CGAAGCGTTTGCCATGATGA+TGG | 0.538919 | 3_4:+61168984 | Msa0511570:CDS |
| TGTAGGTGCTCCCCATTGAA+AGG | 0.539040 | 3_4:-61168950 | None:intergenic |
| AGCATTTGTTGCGGGTGTTG+TGG | 0.545109 | 3_4:+61170865 | Msa0511570:CDS |
| CGATTACCTGCAGTAATTGG+AGG | 0.545684 | 3_4:+61166780 | Msa0511570:CDS |
| TGAATGCATTGCTTGGTCAT+GGG | 0.546411 | 3_4:-61171311 | None:intergenic |
| TTTGGTAGTTGATCCTTTGG+TGG | 0.549747 | 3_4:-61165507 | None:intergenic |
| CCAATCAAAAGCATTTGTTG+CGG | 0.549945 | 3_4:+61170856 | Msa0511570:CDS |
| TAAGACCCTCCAATTACTGC+AGG | 0.557300 | 3_4:-61166786 | None:intergenic |
| AGAAACTAACGCCATGGAGG+AGG | 0.558083 | 3_4:-61165552 | None:intergenic |
| GCTTCGCCTGCATCAAATGT+AGG | 0.559087 | 3_4:-61168967 | None:intergenic |
| GCCTTTGGCGTAATGTTGCA+AGG | 0.561053 | 3_4:+61167567 | Msa0511570:CDS |
| AGTCCACACAGGTGGAAGAT+GGG | 0.561280 | 3_4:+61170599 | Msa0511570:CDS |
| TGTTCTACTCACTGTTGGAG+GGG | 0.564508 | 3_4:+61168274 | Msa0511570:CDS |
| CTAAGAATAGAAGGTGGCAA+TGG | 0.564521 | 3_4:-61169720 | None:intergenic |
| GTAGGTGCTCCCCATTGAAA+GGG | 0.565086 | 3_4:-61168949 | None:intergenic |
| TCATCATTTGCAGGAGCTGG+AGG | 0.565976 | 3_4:+61170447 | Msa0511570:intron |
| AACGAAAGATGCCATCATCA+TGG | 0.570031 | 3_4:-61168995 | None:intergenic |
| ACAATCTCAATTATTCTCGC+TGG | 0.570834 | 3_4:+61166825 | Msa0511570:CDS |
| ATCAGAATTTACAGAAACAA+GGG | 0.573191 | 3_4:-61171207 | None:intergenic |
| AATGCTATAAATTAATAGAG+TGG | 0.574867 | 3_4:-61171162 | None:intergenic |
| GGACAGAGGCAAACATTGGT+GGG | 0.574941 | 3_4:+61170937 | Msa0511570:CDS |
| TAAGAAGCTATGGCAGGAGG+AGG | 0.579489 | 3_4:+61165447 | Msa0511570:exon |
| TGTTGCTGGTATTAACACAT+TGG | 0.581871 | 3_4:+61166737 | Msa0511570:CDS |
| GATCAGAATTTACAGAAACA+AGG | 0.582186 | 3_4:-61171208 | None:intergenic |
| AGGTCAATGAATGCATTGCT+TGG | 0.582812 | 3_4:-61171318 | None:intergenic |
| GATTAAGAAGCTATGGCAGG+AGG | 0.583299 | 3_4:+61165444 | Msa0511570:exon |
| AGGACAGAGGCAAACATTGG+TGG | 0.588315 | 3_4:+61170936 | Msa0511570:CDS |
| GGAGCACCTACATTTGATGC+AGG | 0.588577 | 3_4:+61168961 | Msa0511570:CDS |
| CGCACAATTAATTAAACCGA+TGG | 0.592039 | 3_4:-61171037 | None:intergenic |
| GAATGCATTGCTTGGTCATG+GGG | 0.596893 | 3_4:-61171310 | None:intergenic |
| GCATTACTAGTCCTCCTCCA+TGG | 0.599317 | 3_4:+61165541 | Msa0511570:CDS |
| GAAAGGACAGAGGCAAACAT+TGG | 0.599729 | 3_4:+61170933 | Msa0511570:CDS |
| AAACCAACAAGAGAAACCAA+TGG | 0.606011 | 3_4:-61167846 | None:intergenic |
| CTGATATTAGAACTAGACTC+TGG | 0.607375 | 3_4:-61171096 | None:intergenic |
| TAATGAACCAGATCCGATTG+AGG | 0.607552 | 3_4:+61166857 | Msa0511570:CDS |
| ACATTTCCACCTCCCATCTG+AGG | 0.609636 | 3_4:-61166589 | None:intergenic |
| AAGATAATGAGGGCAGTCCA+GGG | 0.610018 | 3_4:+61167497 | Msa0511570:CDS |
| GCTCTTGTTCCTCAGATGGG+AGG | 0.615420 | 3_4:+61166580 | Msa0511570:CDS |
| GAAATTCAAGAAGATAATGA+GGG | 0.618663 | 3_4:+61167487 | Msa0511570:intron |
| AATGCAGCAATGATTGCAGG+TGG | 0.623862 | 3_4:-61170305 | None:intergenic |
| CCACCTTCTATTCTTAGTCG+GGG | 0.624455 | 3_4:+61169726 | Msa0511570:CDS |
| ACCTTGCAACATTACGCCAA+AGG | 0.624889 | 3_4:-61167568 | None:intergenic |
| GATTACCTGCAGTAATTGGA+GGG | 0.629859 | 3_4:+61166781 | Msa0511570:CDS |
| TTTCCCGAATGCAACACATG+TGG | 0.633762 | 3_4:-61168194 | None:intergenic |
| ATACCCATCTTCCACCTGTG+TGG | 0.636689 | 3_4:-61170602 | None:intergenic |
| TATGGGCCAGTCCACACAGG+TGG | 0.641196 | 3_4:+61170591 | Msa0511570:CDS |
| CATCTGAGGAACAAGAGCAG+TGG | 0.642369 | 3_4:-61166575 | None:intergenic |
| GACAAGTACAAGTCATTCAA+GGG | 0.644339 | 3_4:+61170959 | Msa0511570:CDS |
| ACCACAACCACATCCACCAA+AGG | 0.644503 | 3_4:+61165494 | Msa0511570:CDS |
| TACAGCAATGAAAGCTCCAG+TGG | 0.645288 | 3_4:-61169676 | None:intergenic |
| GGTTATGGGCCAGTCCACAC+AGG | 0.660679 | 3_4:+61170588 | Msa0511570:CDS |
| CAAGGGTGACACAAGAAGTG+AGG | 0.668674 | 3_4:+61170976 | Msa0511570:CDS |
| GTTTCAGTCTTACACAGACA+CGG | 0.669427 | 3_4:-61169969 | None:intergenic |
| ATGCAGCAATGATTGCAGGT+GGG | 0.675249 | 3_4:-61170304 | None:intergenic |
| AAAAGAAACTAACGCCATGG+AGG | 0.701039 | 3_4:-61165555 | None:intergenic |
| AAGCAACAATAAGAGCACCC+TGG | 0.705283 | 3_4:-61167514 | None:intergenic |
| AAGAATAGAAGGTGGCAATG+GGG | 0.708313 | 3_4:-61169718 | None:intergenic |
| GTATACTCATTGAAGTACTG+TGG | 0.710895 | 3_4:-61170555 | None:intergenic |
| TCATCTATTAGAAAGGACAG+AGG | 0.717827 | 3_4:+61170923 | Msa0511570:CDS |
| GTTCCATATCCCTTTCAATG+GGG | 0.722732 | 3_4:+61168940 | Msa0511570:CDS |
| CAAGTCCAGCACGATCAGTG+CGG | 0.727280 | 3_4:-61168334 | None:intergenic |
| CCCCGACTAAGAATAGAAGG+TGG | 0.728889 | 3_4:-61169726 | None:intergenic |
| AATGCATTGCTTGGTCATGG+GGG | 0.733377 | 3_4:-61171309 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTGATTAAAATAAAATAAA+GGG | + | chr3_4:61165638-61165657 | Msa0511570:intron | 10.0% |
| !! | AAATAAAGCAAAAAAAAAAA+AGG | - | chr3_4:61167455-61167474 | None:intergenic | 10.0% |
| !! | GGTTGATTAAAATAAAATAA+AGG | + | chr3_4:61165637-61165656 | Msa0511570:intron | 15.0% |
| !!! | TTAATTAAGCATTGATATTA+AGG | + | chr3_4:61165804-61165823 | Msa0511570:intron | 15.0% |
| !!! | AATTAATTTGATGAGAAATT+TGG | + | chr3_4:61166473-61166492 | Msa0511570:intron | 15.0% |
| !!! | ATTAATTTGATGAGAAATTT+GGG | + | chr3_4:61166474-61166493 | Msa0511570:intron | 15.0% |
| !!! | TTTACTGAATACAATTTTTT+TGG | - | chr3_4:61167731-61167750 | None:intergenic | 15.0% |
| !!! | TCTTTGTTCTTTTAATATTA+TGG | + | chr3_4:61168121-61168140 | Msa0511570:intron | 15.0% |
| !!! | AATGAATAAATTTAAAGCTT+TGG | + | chr3_4:61168537-61168556 | Msa0511570:intron | 15.0% |
| !! | TTAAAAAAGAGAATATCATA+AGG | - | chr3_4:61169043-61169062 | None:intergenic | 15.0% |
| !!! | TGATATTCTCTTTTTTAAAT+TGG | + | chr3_4:61169045-61169064 | Msa0511570:intron | 15.0% |
| !!! | GATTGATTATTTTTATAAGA+GGG | - | chr3_4:61169261-61169280 | None:intergenic | 15.0% |
| !!! | TGATTGATTATTTTTATAAG+AGG | - | chr3_4:61169262-61169281 | None:intergenic | 15.0% |
| !! | ATATATATAATTGTACTGTA+AGG | + | chr3_4:61169433-61169452 | Msa0511570:intron | 15.0% |
| !! | TTTAACTATATAACTTGAAA+AGG | - | chr3_4:61169525-61169544 | None:intergenic | 15.0% |
| !! | ATAAATGATAATCGTAATAA+TGG | + | chr3_4:61169789-61169808 | Msa0511570:intron | 15.0% |
| !! | CAATTTCATTTATATAAACA+AGG | - | chr3_4:61170037-61170056 | None:intergenic | 15.0% |
| !! | CTTGTTTATATAAATGAAAT+TGG | + | chr3_4:61170035-61170054 | Msa0511570:intron | 15.0% |
| !! | AAATATTTGTTTAGATTGAA+AGG | - | chr3_4:61171016-61171035 | None:intergenic | 15.0% |
| !! | ATTCTCATTCATTATTTGTA+AGG | + | chr3_4:61165314-61165333 | Msa0511570:intron | 20.0% |
| !! | TAACATTATCTTCTTCATTA+AGG | + | chr3_4:61165344-61165363 | Msa0511570:intron | 20.0% |
| !! | GTATAAGAACATTATTTGTT+TGG | + | chr3_4:61165660-61165679 | Msa0511570:intron | 20.0% |
| !! | TATTTCTTACTTTATGTCAT+TGG | + | chr3_4:61165712-61165731 | Msa0511570:intron | 20.0% |
| !!! | TGCAAAAAGAATCTAAAATT+AGG | - | chr3_4:61165739-61165758 | None:intergenic | 20.0% |
| !!! | TGTTTGATTTCATTTTTAGA+GGG | - | chr3_4:61166162-61166181 | None:intergenic | 20.0% |
| !!! | ATGTTTGATTTCATTTTTAG+AGG | - | chr3_4:61166163-61166182 | None:intergenic | 20.0% |
| !!! | TATTCAGGTTGTTTTATTTT+TGG | + | chr3_4:61166242-61166261 | Msa0511570:intron | 20.0% |
| !!! | ATTCAGGTTGTTTTATTTTT+GGG | + | chr3_4:61166243-61166262 | Msa0511570:intron | 20.0% |
| !!! | TTAATTTGATGAGAAATTTG+GGG | + | chr3_4:61166475-61166494 | Msa0511570:intron | 20.0% |
| !!! | AATTGTAGTTTTCATACTTA+GGG | - | chr3_4:61167106-61167125 | None:intergenic | 20.0% |
| !!! | AAATTGTAGTTTTCATACTT+AGG | - | chr3_4:61167107-61167126 | None:intergenic | 20.0% |
| !!! | AAGTATGAAAACTACAATTT+TGG | + | chr3_4:61167107-61167126 | Msa0511570:intron | 20.0% |
| !!! | AACTTTGAAAACTACAATTT+TGG | - | chr3_4:61167301-61167320 | None:intergenic | 20.0% |
| !!! | AAATTGTAGTTTTCAAAGTT+AGG | + | chr3_4:61167301-61167320 | Msa0511570:intron | 20.0% |
| !!! | AATTGTAGTTTTCAAAGTTA+GGG | + | chr3_4:61167302-61167321 | Msa0511570:intron | 20.0% |
| !!! | AATTTTTTTGGTGAATATCA+TGG | - | chr3_4:61167719-61167738 | None:intergenic | 20.0% |
| !! | AAATTCCTTATTCAAATCTT+TGG | + | chr3_4:61167749-61167768 | Msa0511570:intron | 20.0% |
| !! | TTGTGAATAAAACAGAAAAA+CGG | - | chr3_4:61168232-61168251 | None:intergenic | 20.0% |
| !! | GATTTGAAAAAAGAGAAAAT+TGG | - | chr3_4:61168609-61168628 | None:intergenic | 20.0% |
| !!! | AATTTTTTTTTGCCCTTATT+GGG | + | chr3_4:61168682-61168701 | Msa0511570:intron | 20.0% |
| !!! | GAATGAGTTTTAAAAATTAC+TGG | + | chr3_4:61169302-61169321 | Msa0511570:intron | 20.0% |
| !!! | AGTTTTAAAAATTACTGGTA+AGG | + | chr3_4:61169307-61169326 | Msa0511570:intron | 20.0% |
| !!! | TTTAATCCTGAAAAAACTTT+TGG | + | chr3_4:61169338-61169357 | Msa0511570:intron | 20.0% |
| !!! | AAAAAACTTTTGGTAATTGT+TGG | + | chr3_4:61169348-61169367 | Msa0511570:intron | 20.0% |
| !!! | AAAAACTTTTGGTAATTGTT+GGG | + | chr3_4:61169349-61169368 | Msa0511570:intron | 20.0% |
| !!! | GAAAGTTTTACTTGATTTAT+AGG | - | chr3_4:61169856-61169875 | None:intergenic | 20.0% |
| !!! | ATGATTTTCTTTTCAATTCT+CGG | + | chr3_4:61170148-61170167 | Msa0511570:CDS | 20.0% |
| !!! | TTTAGAACAAAGTTCATATT+AGG | + | chr3_4:61170504-61170523 | Msa0511570:CDS | 20.0% |
| !!! | AAATATATTTTTTGCAGAGT+CGG | + | chr3_4:61170637-61170656 | Msa0511570:intron | 20.0% |
| !!! | TCTAAACAAATATTTTCCAT+CGG | + | chr3_4:61171021-61171040 | Msa0511570:CDS | 20.0% |
| !! | AATGCTATAAATTAATAGAG+TGG | - | chr3_4:61171165-61171184 | None:intergenic | 20.0% |
| !! | AATGACTAGTGTTGAAAAAA+AGG | - | chr3_4:61165297-61165316 | None:intergenic | 25.0% |
| ! | ATGAAGAAGATAATGTTACT+TGG | - | chr3_4:61165342-61165361 | None:intergenic | 25.0% |
| !!! | GTTTTTAGATTAAGAAGCTA+TGG | + | chr3_4:61165437-61165456 | Msa0511570:exon | 25.0% |
| ! | GTAATGCAGTAAGAAATATT+TGG | - | chr3_4:61165528-61165547 | None:intergenic | 25.0% |
| !!! | TCTTTTTTTCTCTTAGATTC+TGG | + | chr3_4:61165572-61165591 | Msa0511570:intron | 25.0% |
| ! | GTATCTCATTATTCTTAATC+TGG | + | chr3_4:61165616-61165635 | Msa0511570:intron | 25.0% |
| ! | AGAACATTATTTGTTTGGTT+TGG | + | chr3_4:61165665-61165684 | Msa0511570:intron | 25.0% |
| ! | CTAGATCTAGAAAAAAAACT+GGG | - | chr3_4:61165835-61165854 | None:intergenic | 25.0% |
| ! | TCTAGATCTAGAAAAAAAAC+TGG | - | chr3_4:61165836-61165855 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCTAGATCTAGAC+TGG | + | chr3_4:61165837-61165856 | Msa0511570:intron | 25.0% |
| ! | CTTACATCATAAGACTAATT+TGG | - | chr3_4:61165883-61165902 | None:intergenic | 25.0% |
| !! | GTTTCAAGTAGAATCATATT+TGG | + | chr3_4:61166062-61166081 | Msa0511570:intron | 25.0% |
| !! | AAAATTGATTCTCACATGTT+TGG | - | chr3_4:61166116-61166135 | None:intergenic | 25.0% |
| !!! | TTCAGGTTGTTTTATTTTTG+GGG | + | chr3_4:61166244-61166263 | Msa0511570:intron | 25.0% |
| ! | ATGTTTGAACAATGTTGTAA+AGG | + | chr3_4:61166306-61166325 | Msa0511570:intron | 25.0% |
| !! | TTTTGCGTAATTGGAATATT+TGG | + | chr3_4:61166331-61166350 | Msa0511570:intron | 25.0% |
| ! | GAATATTTGGCCAATTTAAA+TGG | + | chr3_4:61166344-61166363 | Msa0511570:intron | 25.0% |
| !! | AAGGAATATGCCATTTAAAT+TGG | - | chr3_4:61166357-61166376 | None:intergenic | 25.0% |
| ! | ACACAAACTACAAATAATCA+AGG | - | chr3_4:61166376-61166395 | None:intergenic | 25.0% |
| ! | TAACTATACTAAATGATGTG+TGG | + | chr3_4:61166895-61166914 | Msa0511570:intron | 25.0% |
| !! | GTAAATCATAGTCTCTATTT+TGG | - | chr3_4:61166957-61166976 | None:intergenic | 25.0% |
| ! | TTGGAGACACAATAAAAAAA+TGG | - | chr3_4:61166994-61167013 | None:intergenic | 25.0% |
| !! | ATTGTAGTTTTCATACTTAG+GGG | - | chr3_4:61167105-61167124 | None:intergenic | 25.0% |
| !!! | CAACATTTTGAAAAGATAAG+GGG | - | chr3_4:61167196-61167215 | None:intergenic | 25.0% |
| !!! | GCAACATTTTGAAAAGATAA+GGG | - | chr3_4:61167197-61167216 | None:intergenic | 25.0% |
| !! | ATTGTAGTTTTCAAAGTTAG+GGG | + | chr3_4:61167303-61167322 | Msa0511570:intron | 25.0% |
| !! | TTATTGTGGCATTTAAAGTT+AGG | - | chr3_4:61167378-61167397 | None:intergenic | 25.0% |
| ! | ATCAAATAGCTACAAACTTA+AGG | - | chr3_4:61167403-61167422 | None:intergenic | 25.0% |
| ! | TAAGTTTGTAGCTATTTGAT+TGG | + | chr3_4:61167403-61167422 | Msa0511570:intron | 25.0% |
| ! | TATCTTCTTGAATTTCTGAA+TGG | - | chr3_4:61167483-61167502 | None:intergenic | 25.0% |
| ! | AGAAATTCAAGAAGATAATG+AGG | + | chr3_4:61167486-61167505 | Msa0511570:intron | 25.0% |
| ! | GAAATTCAAGAAGATAATGA+GGG | + | chr3_4:61167487-61167506 | Msa0511570:intron | 25.0% |
| ! | TACAAATTTGCACAAATAGT+CGG | - | chr3_4:61167651-61167670 | None:intergenic | 25.0% |
| ! | CTAATCCAAAGATTTGAATA+AGG | - | chr3_4:61167757-61167776 | None:intergenic | 25.0% |
| ! | AAATCAAACTTACATCAGAT+TGG | - | chr3_4:61167789-61167808 | None:intergenic | 25.0% |
| !!! | AGTTTGATTTTTTTTTCTGC+AGG | + | chr3_4:61167799-61167818 | Msa0511570:intron | 25.0% |
| ! | TAGAAACATTAAAAGACACT+AGG | - | chr3_4:61168071-61168090 | None:intergenic | 25.0% |
| ! | TCATTAAATTTAACCCTTGA+TGG | + | chr3_4:61168388-61168407 | Msa0511570:intron | 25.0% |
| ! | TAAAACTAAAAGAGTCTACA+CGG | - | chr3_4:61168431-61168450 | None:intergenic | 25.0% |
| ! | ATTGGTGAATGAATATAAGT+TGG | - | chr3_4:61168591-61168610 | None:intergenic | 25.0% |
| ! | TTGACATGAAATAACAAGAA+TGG | - | chr3_4:61168631-61168650 | None:intergenic | 25.0% |
| !!! | GAATTTTTTTTTGCCCTTAT+TGG | + | chr3_4:61168681-61168700 | Msa0511570:intron | 25.0% |
| !!! | ATTTTTTTTTGCCCTTATTG+GGG | + | chr3_4:61168683-61168702 | Msa0511570:intron | 25.0% |
| !! | TCTTCAATCTTTTCTAATAC+TGG | + | chr3_4:61168747-61168766 | Msa0511570:intron | 25.0% |
| ! | TTTCTCAAGAAAGATTCAAT+TGG | + | chr3_4:61168807-61168826 | Msa0511570:intron | 25.0% |
| ! | TTCTCAAGAAAGATTCAATT+GGG | + | chr3_4:61168808-61168827 | Msa0511570:intron | 25.0% |
| !!! | TATTCTGTCTTTGTTTTTTC+CGG | + | chr3_4:61169131-61169150 | Msa0511570:intron | 25.0% |
| !!! | CAATTACCAAAAGTTTTTTC+AGG | - | chr3_4:61169347-61169366 | None:intergenic | 25.0% |
| ! | TTATATTCTATTCAATTGCC+AGG | + | chr3_4:61169476-61169495 | Msa0511570:intron | 25.0% |
| ! | TATATTCTATTCAATTGCCA+GGG | + | chr3_4:61169477-61169496 | Msa0511570:intron | 25.0% |
| !!! | ATTACATGCTGCTTATTTTA+AGG | - | chr3_4:61170413-61170432 | None:intergenic | 25.0% |
| ! | TGCAAATGATGAATGAAAAT+GGG | - | chr3_4:61170439-61170458 | None:intergenic | 25.0% |
| !!! | ACTTTGTTCTAAAACTGTTA+AGG | - | chr3_4:61170497-61170516 | None:intergenic | 25.0% |
| ! | ATCAGAATTTACAGAAACAA+GGG | - | chr3_4:61171210-61171229 | None:intergenic | 25.0% |
| ! | ATATTTGGTAGTTGATCCTT+TGG | - | chr3_4:61165513-61165532 | None:intergenic | 30.0% |
| AAAAAAAGAAACTAACGCCA+TGG | - | chr3_4:61165561-61165580 | None:intergenic | 30.0% | |
| TTATGATGTAAGTGTGTGTT+TGG | + | chr3_4:61165891-61165910 | Msa0511570:intron | 30.0% | |
| AACCAAAAGTGAGTTATGTT+TGG | + | chr3_4:61165963-61165982 | Msa0511570:intron | 30.0% | |
| ! | ATCCAAACATAACTCACTTT+TGG | - | chr3_4:61165968-61165987 | None:intergenic | 30.0% |
| TCAAGTAGAATCATATTTGG+AGG | + | chr3_4:61166065-61166084 | Msa0511570:intron | 30.0% | |
| !! | TTACACCTCTAGAATCAATT+TGG | + | chr3_4:61166134-61166153 | Msa0511570:intron | 30.0% |
| GTGTTATGTAACATCACTAA+GGG | + | chr3_4:61166266-61166285 | Msa0511570:intron | 30.0% | |
| ! | GTAAAGGAATTTTGCGTAAT+TGG | + | chr3_4:61166322-61166341 | Msa0511570:intron | 30.0% |
| GTGAATCAATACTAAGGAAA+AGG | - | chr3_4:61166427-61166446 | None:intergenic | 30.0% | |
| !! | TCCTTAGTATTGATTCACTT+TGG | + | chr3_4:61166429-61166448 | Msa0511570:intron | 30.0% |
| ACCAAAGTGAATCAATACTA+AGG | - | chr3_4:61166433-61166452 | None:intergenic | 30.0% | |
| ATGTTGAAATCCAAGAAGTA+TGG | - | chr3_4:61166521-61166540 | None:intergenic | 30.0% | |
| ! | CAACATTTTCTTGTAATGCT+CGG | + | chr3_4:61166535-61166554 | Msa0511570:CDS | 30.0% |
| !! | AGCAAGTTTTGATATGGAAA+TGG | + | chr3_4:61166619-61166638 | Msa0511570:intron | 30.0% |
| ! | ATATTCTATTTGCTGCTTGT+AGG | + | chr3_4:61166680-61166699 | Msa0511570:intron | 30.0% |
| AAGCAGAGTTTCAATTACTT+TGG | - | chr3_4:61166715-61166734 | None:intergenic | 30.0% | |
| AGAATAATTGAGATTGTCGT+TGG | - | chr3_4:61166822-61166841 | None:intergenic | 30.0% | |
| ACTGCATGCATAACTTTAAT+AGG | + | chr3_4:61167030-61167049 | Msa0511570:intron | 30.0% | |
| !! | TCGCAACTTTTTGAAAGATA+GGG | - | chr3_4:61167333-61167352 | None:intergenic | 30.0% |
| !! | ATCGCAACTTTTTGAAAGAT+AGG | - | chr3_4:61167332-61167351 | None:intergenic | 30.0% |
| ! | CTTTCAAAAAGTTGCGATTT+TGG | + | chr3_4:61167078-61167097 | Msa0511570:intron | 30.0% |
| ! | TTGTAGTTTTCATACTTAGG+GGG | - | chr3_4:61167104-61167123 | None:intergenic | 30.0% |
| ACATATTTCCCTTAAGTTAG+GGG | - | chr3_4:61167166-61167185 | None:intergenic | 30.0% | |
| GACATATTTCCCTTAAGTTA+GGG | - | chr3_4:61167167-61167186 | None:intergenic | 30.0% | |
| AGACATATTTCCCTTAAGTT+AGG | - | chr3_4:61167168-61167187 | None:intergenic | 30.0% | |
| !! | CGCAACATTTTGAAAAGATA+AGG | - | chr3_4:61167198-61167217 | None:intergenic | 30.0% |
| ! | TTGTAGTTTTCAAAGTTAGG+GGG | + | chr3_4:61167304-61167323 | Msa0511570:intron | 30.0% |
| ! | CTTTCAAAAAGTTGCGATTT+TGG | - | chr3_4:61167078-61167097 | None:intergenic | 30.0% |
| !! | TCGCAACTTTTTGAAAGATA+AGG | + | chr3_4:61167333-61167352 | Msa0511570:intron | 30.0% |
| !! | CGCAACTTTTTGAAAGATAA+GGG | + | chr3_4:61167334-61167353 | Msa0511570:intron | 30.0% |
| !! | GCAACTTTTTGAAAGATAAG+GGG | + | chr3_4:61167335-61167354 | Msa0511570:intron | 30.0% |
| !! | ACAAACTTAAGGTCTTATTG+TGG | - | chr3_4:61167392-61167411 | None:intergenic | 30.0% |
| TCAACTCTTCAAATAGTACT+AGG | + | chr3_4:61167536-61167555 | Msa0511570:CDS | 30.0% | |
| TTACATCAGATTGGAACATT+TGG | - | chr3_4:61167780-61167799 | None:intergenic | 30.0% | |
| ATCCATGAACTAAAATCACA+AGG | - | chr3_4:61168101-61168120 | None:intergenic | 30.0% | |
| TATTCACAATTGCAATTGTG+TGG | + | chr3_4:61168243-61168262 | Msa0511570:CDS | 30.0% | |
| AATAGACAAAATGCCATCAA+GGG | - | chr3_4:61168404-61168423 | None:intergenic | 30.0% | |
| !! | TTTTAATTGGGTCCTTATCA+TGG | - | chr3_4:61168506-61168525 | None:intergenic | 30.0% |
| GATAAAAATCTCCCCAATAA+GGG | - | chr3_4:61168697-61168716 | None:intergenic | 30.0% | |
| TGATAAAAATCTCCCCAATA+AGG | - | chr3_4:61168698-61168717 | None:intergenic | 30.0% | |
| TCAAGAAAACCAATATCTCA+AGG | - | chr3_4:61168835-61168854 | None:intergenic | 30.0% | |
| !!! | TGAGATATTGGTTTTCTTGA+TGG | + | chr3_4:61168835-61168854 | Msa0511570:intron | 30.0% |
| !!! | GAGATATTGGTTTTCTTGAT+GGG | + | chr3_4:61168836-61168855 | Msa0511570:intron | 30.0% |
| !!! | CTCTTGTATTTTGAGTTTGT+AGG | + | chr3_4:61168911-61168930 | Msa0511570:intron | 30.0% |
| TAGTTTCATTGAAATTCAGC+TGG | - | chr3_4:61169237-61169256 | None:intergenic | 30.0% | |
| TTCATGATACTAAGCTACTA+TGG | - | chr3_4:61169285-61169304 | None:intergenic | 30.0% | |
| ATATTCTATTCAATTGCCAG+GGG | + | chr3_4:61169478-61169497 | Msa0511570:intron | 30.0% | |
| AAAACTTAGCCTACACATAA+TGG | + | chr3_4:61169542-61169561 | Msa0511570:intron | 30.0% | |
| CTGTTACATAGTTGCTAATT+TGG | + | chr3_4:61169627-61169646 | Msa0511570:intron | 30.0% | |
| ! | CATCTGATTTATGCTTGTTA+GGG | + | chr3_4:61169899-61169918 | Msa0511570:intron | 30.0% |
| ! | ATCTGATTTATGCTTGTTAG+GGG | + | chr3_4:61169900-61169919 | Msa0511570:intron | 30.0% |
| ATTCTTCTATCTGGATTGTT+TGG | + | chr3_4:61169929-61169948 | Msa0511570:CDS | 30.0% | |
| TATCACTGTGTAGGAAAATT+TGG | + | chr3_4:61170263-61170282 | Msa0511570:intron | 30.0% | |
| TACCAACATAAGCAAAGAAT+AGG | - | chr3_4:61170337-61170356 | None:intergenic | 30.0% | |
| CTGCAAATGATGAATGAAAA+TGG | - | chr3_4:61170440-61170459 | None:intergenic | 30.0% | |
| ! | CATTTTCATTCATCATTTGC+AGG | + | chr3_4:61170438-61170457 | Msa0511570:intron | 30.0% |
| ATTAGGCTTCTCTATATTCT+TGG | + | chr3_4:61170521-61170540 | Msa0511570:CDS | 30.0% | |
| TTAGGCTTCTCTATATTCTT+GGG | + | chr3_4:61170522-61170541 | Msa0511570:CDS | 30.0% | |
| AATGAGTATACAGCAATCAA+TGG | + | chr3_4:61170567-61170586 | Msa0511570:CDS | 30.0% | |
| TATACAGCAATCAATGGTTA+TGG | + | chr3_4:61170573-61170592 | Msa0511570:CDS | 30.0% | |
| ATACAGCAATCAATGGTTAT+GGG | + | chr3_4:61170574-61170593 | Msa0511570:CDS | 30.0% | |
| CAATGCATAAGAATTGAACT+AGG | + | chr3_4:61170755-61170774 | Msa0511570:intron | 30.0% | |
| ! | TTGAACTAGGATTTGTTCTT+TGG | + | chr3_4:61170768-61170787 | Msa0511570:intron | 30.0% |
| !! | CAAATGCTTTTGATTGGAAT+GGG | - | chr3_4:61170853-61170872 | None:intergenic | 30.0% |
| !! | ACAAATGCTTTTGATTGGAA+TGG | - | chr3_4:61170854-61170873 | None:intergenic | 30.0% |
| !! | TCTTATGTAAAGTGTTGTCT+AGG | - | chr3_4:61170898-61170917 | None:intergenic | 30.0% |
| TAGACAACACTTTACATAAG+AGG | + | chr3_4:61170897-61170916 | Msa0511570:CDS | 30.0% | |
| AGACAACACTTTACATAAGA+GGG | + | chr3_4:61170898-61170917 | Msa0511570:CDS | 30.0% | |
| !! | CATCGGTTTAATTAATTGTG+CGG | + | chr3_4:61171038-61171057 | Msa0511570:exon | 30.0% |
| ACAAGAGCGATAAGATAAAA+TGG | + | chr3_4:61171062-61171081 | Msa0511570:three_prime_UTR | 30.0% | |
| GATCAGAATTTACAGAAACA+AGG | - | chr3_4:61171211-61171230 | None:intergenic | 30.0% | |
| ACGTGACAAAAATCAAATGA+AGG | - | chr3_4:61171274-61171293 | None:intergenic | 30.0% | |
| TTAGATTAAGAAGCTATGGC+AGG | + | chr3_4:61165441-61165460 | Msa0511570:exon | 35.0% | |
| ! | GGTGTTATGTAACATCACTA+AGG | + | chr3_4:61166265-61166284 | Msa0511570:intron | 35.0% |
| TCAATACTAAGGAAAAGGAG+AGG | - | chr3_4:61166422-61166441 | None:intergenic | 35.0% | |
| !! | AGGACTAGCAAGTTTTGATA+TGG | + | chr3_4:61166613-61166632 | Msa0511570:intron | 35.0% |
| TGTTGCTGGTATTAACACAT+TGG | + | chr3_4:61166737-61166756 | Msa0511570:CDS | 35.0% | |
| ACAATCTCAATTATTCTCGC+TGG | + | chr3_4:61166825-61166844 | Msa0511570:CDS | 35.0% | |
| ! | GATCTGGTTCATTACTGAAT+CGG | - | chr3_4:61166851-61166870 | None:intergenic | 35.0% |
| TCTTCTGATAAGACCTCAAT+CGG | - | chr3_4:61166873-61166892 | None:intergenic | 35.0% | |
| ! | AGTGTGTGATTGTTTGCTTT+TGG | - | chr3_4:61167013-61167032 | None:intergenic | 35.0% |
| AATAGGCTAAAGTGCAACTT+TGG | + | chr3_4:61167047-61167066 | Msa0511570:intron | 35.0% | |
| !! | GCAACTTTTTGAAAGATAGG+GGG | - | chr3_4:61167073-61167092 | None:intergenic | 35.0% |
| !! | CGCAACTTTTTGAAAGATAG+GGG | - | chr3_4:61167074-61167093 | None:intergenic | 35.0% |
| AGCATATTTCCCTAAACATG+GGG | - | chr3_4:61167135-61167154 | None:intergenic | 35.0% | |
| GAGCATATTTCCCTAAACAT+GGG | - | chr3_4:61167136-61167155 | None:intergenic | 35.0% | |
| AGAGCATATTTCCCTAAACA+TGG | - | chr3_4:61167137-61167156 | None:intergenic | 35.0% | |
| ! | TCTTTTAACCCCCTAACTTA+AGG | + | chr3_4:61167154-61167173 | Msa0511570:intron | 35.0% |
| ! | CTTTTAACCCCCTAACTTAA+GGG | + | chr3_4:61167155-61167174 | Msa0511570:intron | 35.0% |
| CATATTTCCCTTAAGTTAGG+GGG | - | chr3_4:61167165-61167184 | None:intergenic | 35.0% | |
| ! | TGCCCCTTATCTTTTCAAAA+TGG | + | chr3_4:61167223-61167242 | Msa0511570:intron | 35.0% |
| !! | GGCCATTTTGAAAAGATAAG+GGG | - | chr3_4:61167228-61167247 | None:intergenic | 35.0% |
| !! | GGGCCATTTTGAAAAGATAA+GGG | - | chr3_4:61167229-61167248 | None:intergenic | 35.0% |
| ! | AACTTTGAAAACTGCTGAGA+AGG | - | chr3_4:61167272-61167291 | None:intergenic | 35.0% |
| ! | TCTCAGCAGTTTTCAAAGTT+AGG | + | chr3_4:61167272-61167291 | Msa0511570:intron | 35.0% |
| ! | CTCAGCAGTTTTCAAAGTTA+GGG | + | chr3_4:61167273-61167292 | Msa0511570:intron | 35.0% |
| ! | TCAGCAGTTTTCAAAGTTAG+GGG | + | chr3_4:61167274-61167293 | Msa0511570:intron | 35.0% |
| GCTATTTGATTGGAACTGTT+AGG | + | chr3_4:61167413-61167432 | Msa0511570:intron | 35.0% | |
| ! | CAAATAGTACTAGGCTTTAG+TGG | + | chr3_4:61167545-61167564 | Msa0511570:CDS | 35.0% |
| AATTTGCACAAATAGTCGGA+AGG | - | chr3_4:61167647-61167666 | None:intergenic | 35.0% | |
| AAACCAACAAGAGAAACCAA+TGG | - | chr3_4:61167849-61167868 | None:intergenic | 35.0% | |
| !!! | TTGGTTTCTCTTGTTGGTTT+TGG | + | chr3_4:61167849-61167868 | Msa0511570:CDS | 35.0% |
| !!! | TGGTTTCTCTTGTTGGTTTT+GGG | + | chr3_4:61167850-61167869 | Msa0511570:CDS | 35.0% |
| ! | TTGTACGAATTAGGTTTTCC+TGG | + | chr3_4:61167873-61167892 | Msa0511570:CDS | 35.0% |
| ! | TGTACGAATTAGGTTTTCCT+GGG | + | chr3_4:61167874-61167893 | Msa0511570:CDS | 35.0% |
| GTTGCTAAATGTGTAGAGAT+TGG | + | chr3_4:61167983-61168002 | Msa0511570:CDS | 35.0% | |
| AATACCAGCAATATAAGCTC+TGG | - | chr3_4:61168013-61168032 | None:intergenic | 35.0% | |
| ATTGCTGGTATTTGTTTCAC+AGG | + | chr3_4:61168021-61168040 | Msa0511570:CDS | 35.0% | |
| TGAAATCACACAACTAACCA+AGG | - | chr3_4:61168371-61168390 | None:intergenic | 35.0% | |
| CAATAGACAAAATGCCATCA+AGG | - | chr3_4:61168405-61168424 | None:intergenic | 35.0% | |
| CGAGATCAAATATACAAGCA+TGG | - | chr3_4:61168454-61168473 | None:intergenic | 35.0% | |
| GCGATTTAAAAGCTTCTGAT+TGG | + | chr3_4:61168473-61168492 | Msa0511570:intron | 35.0% | |
| ! | GGAGATTTTTATCACTGAAG+TGG | + | chr3_4:61168704-61168723 | Msa0511570:intron | 35.0% |
| TCTATTGTGTTTGTGCTCTA+AGG | - | chr3_4:61168785-61168804 | None:intergenic | 35.0% | |
| AGTTCCATATCCCTTTCAAT+GGG | + | chr3_4:61168939-61168958 | Msa0511570:CDS | 35.0% | |
| !!! | TCTTTGTTTTTTCCGGAACT+GGG | + | chr3_4:61169138-61169157 | Msa0511570:intron | 35.0% |
| ! | TTTTATCAGTGCATTGAAGC+TGG | + | chr3_4:61169161-61169180 | Msa0511570:intron | 35.0% |
| !! | ATGGTTGATTCTTTTCCTCA+AGG | + | chr3_4:61169384-61169403 | Msa0511570:intron | 35.0% |
| !! | TGGTTGATTCTTTTCCTCAA+GGG | + | chr3_4:61169385-61169404 | Msa0511570:intron | 35.0% |
| ATAGTGACACCATTATGTGT+AGG | - | chr3_4:61169554-61169573 | None:intergenic | 35.0% | |
| GAGCTTTCATTGCTGTATAT+AGG | + | chr3_4:61169682-61169701 | Msa0511570:CDS | 35.0% | |
| TAAGAATAGAAGGTGGCAAT+GGG | - | chr3_4:61169722-61169741 | None:intergenic | 35.0% | |
| AAGCATAAATCAGATGCATG+AGG | - | chr3_4:61169895-61169914 | None:intergenic | 35.0% | |
| GCATCTGATTTATGCTTGTT+AGG | + | chr3_4:61169898-61169917 | Msa0511570:intron | 35.0% | |
| ! | TCTGATTTATGCTTGTTAGG+GGG | + | chr3_4:61169901-61169920 | Msa0511570:intron | 35.0% |
| ! | GGATTGTTTGGAACAATTAG+CGG | + | chr3_4:61169941-61169960 | Msa0511570:CDS | 35.0% |
| TAAAAGGGGAGAAATGTACT+CGG | - | chr3_4:61170226-61170245 | None:intergenic | 35.0% | |
| CTACACAGTGATAGAAATGT+TGG | - | chr3_4:61170256-61170275 | None:intergenic | 35.0% | |
| CAACATTTCTATCACTGTGT+AGG | + | chr3_4:61170254-61170273 | Msa0511570:intron | 35.0% | |
| TGCCTATTCTTTGCTTATGT+TGG | + | chr3_4:61170332-61170351 | Msa0511570:CDS | 35.0% | |
| !!! | GCTGCTTATTTTAAGGATCA+TGG | - | chr3_4:61170406-61170425 | None:intergenic | 35.0% |
| !! | GTATACTCATTGAAGTACTG+TGG | - | chr3_4:61170558-61170577 | None:intergenic | 35.0% |
| TACGTGACAGTTCAATGATA+TGG | + | chr3_4:61170820-61170839 | Msa0511570:intron | 35.0% | |
| !! | CCAATCAAAAGCATTTGTTG+CGG | + | chr3_4:61170856-61170875 | Msa0511570:CDS | 35.0% |
| !! | CAATCAAAAGCATTTGTTGC+GGG | + | chr3_4:61170857-61170876 | Msa0511570:CDS | 35.0% |
| GAGGGATTCATCTATTAGAA+AGG | + | chr3_4:61170916-61170935 | Msa0511570:CDS | 35.0% | |
| TCATCTATTAGAAAGGACAG+AGG | + | chr3_4:61170923-61170942 | Msa0511570:CDS | 35.0% | |
| GACAAGTACAAGTCATTCAA+GGG | + | chr3_4:61170959-61170978 | Msa0511570:CDS | 35.0% | |
| CGCACAATTAATTAAACCGA+TGG | - | chr3_4:61171040-61171059 | None:intergenic | 35.0% | |
| CTGATATTAGAACTAGACTC+TGG | - | chr3_4:61171099-61171118 | None:intergenic | 35.0% | |
| ! | TGTGGTTCATCTGATTTTGC+TGG | - | chr3_4:61165480-61165499 | None:intergenic | 40.0% |
| ! | TTTGGTAGTTGATCCTTTGG+TGG | - | chr3_4:61165510-61165529 | None:intergenic | 40.0% |
| AAAAGAAACTAACGCCATGG+AGG | - | chr3_4:61165558-61165577 | None:intergenic | 40.0% | |
| ! | GGGATCCAAATTGATTCTAG+AGG | - | chr3_4:61166142-61166161 | None:intergenic | 40.0% |
| ! | TTCTATTTGCTGCTTGTAGG+CGG | + | chr3_4:61166683-61166702 | Msa0511570:intron | 40.0% |
| !!! | GAAACTCTGCTTTTTGTTGC+TGG | + | chr3_4:61166723-61166742 | Msa0511570:CDS | 40.0% |
| ACATTGGTGCAAACACTCTT+TGG | + | chr3_4:61166753-61166772 | Msa0511570:CDS | 40.0% | |
| TCACGATTACCTGCAGTAAT+TGG | + | chr3_4:61166777-61166796 | Msa0511570:CDS | 40.0% | |
| GATTACCTGCAGTAATTGGA+GGG | + | chr3_4:61166781-61166800 | Msa0511570:CDS | 40.0% | |
| TGAGATTGTCGTTGGAACAT+AGG | - | chr3_4:61166814-61166833 | None:intergenic | 40.0% | |
| TAATGAACCAGATCCGATTG+AGG | + | chr3_4:61166857-61166876 | Msa0511570:CDS | 40.0% | |
| !! | AATTTTGGTCCCCCATGTTT+AGG | + | chr3_4:61167122-61167141 | Msa0511570:intron | 40.0% |
| !! | ATTTTGGTCCCCCATGTTTA+GGG | + | chr3_4:61167123-61167142 | Msa0511570:intron | 40.0% |
| GCATATTTCCCTAAACATGG+GGG | - | chr3_4:61167134-61167153 | None:intergenic | 40.0% | |
| !! | GGGGCCATTTTGAAAAGATA+AGG | - | chr3_4:61167230-61167249 | None:intergenic | 40.0% |
| !! | TTCAAAATGGCCCCTTGTTT+TGG | + | chr3_4:61167236-61167255 | Msa0511570:intron | 40.0% |
| ! | CAGCAGTTTTCAAAGTTAGG+GGG | + | chr3_4:61167275-61167294 | Msa0511570:intron | 40.0% |
| GTTAGGCTAAAGTGCAACTT+TGG | - | chr3_4:61167361-61167380 | None:intergenic | 40.0% | |
| GGTCTCACATTCTTACTAAG+TGG | + | chr3_4:61167592-61167611 | Msa0511570:intron | 40.0% | |
| !! | GTTCCATTGGTTTCTCTTGT+TGG | + | chr3_4:61167843-61167862 | Msa0511570:CDS | 40.0% |
| !!! | GGTTTTGGGTTGTACGAATT+AGG | + | chr3_4:61167864-61167883 | Msa0511570:CDS | 40.0% |
| ! | GTACGAATTAGGTTTTCCTG+GGG | + | chr3_4:61167875-61167894 | Msa0511570:CDS | 40.0% |
| AGCCTTCGACTACATGTTTA+CGG | + | chr3_4:61167900-61167919 | Msa0511570:intron | 40.0% | |
| TCAACATCGATGCTTGTGTT+GGG | + | chr3_4:61167955-61167974 | Msa0511570:intron | 40.0% | |
| !!! | CGCCTTGTGATTTTAGTTCA+TGG | + | chr3_4:61168096-61168115 | Msa0511570:intron | 40.0% |
| TATGCTGTTCTACTCACTGT+TGG | + | chr3_4:61168269-61168288 | Msa0511570:CDS | 40.0% | |
| CAATTGGGTCCTTGAGATAT+TGG | + | chr3_4:61168823-61168842 | Msa0511570:intron | 40.0% | |
| TTGATGGGAATCTACGTTCT+AGG | + | chr3_4:61168851-61168870 | Msa0511570:intron | 40.0% | |
| GAGTTCCATATCCCTTTCAA+TGG | + | chr3_4:61168938-61168957 | Msa0511570:CDS | 40.0% | |
| GTTCCATATCCCTTTCAATG+GGG | + | chr3_4:61168940-61168959 | Msa0511570:CDS | 40.0% | |
| AACGAAAGATGCCATCATCA+TGG | - | chr3_4:61168998-61169017 | None:intergenic | 40.0% | |
| ATCTTTCGTTGCTCTTGTAG+AGG | + | chr3_4:61169008-61169027 | Msa0511570:CDS | 40.0% | |
| !!! | GTCTTTGTTTTTTCCGGAAC+TGG | + | chr3_4:61169137-61169156 | Msa0511570:intron | 40.0% |
| TGAAATTCAGCTGGCACAAA+AGG | - | chr3_4:61169228-61169247 | None:intergenic | 40.0% | |
| TGTTGGGCGTTAGTCATAAA+TGG | + | chr3_4:61169365-61169384 | Msa0511570:intron | 40.0% | |
| ! | TCTTTTTGTACACAGTCCAC+TGG | + | chr3_4:61169660-61169679 | Msa0511570:intron | 40.0% |
| AAGAATAGAAGGTGGCAATG+GGG | - | chr3_4:61169721-61169740 | None:intergenic | 40.0% | |
| CTAAGAATAGAAGGTGGCAA+TGG | - | chr3_4:61169723-61169742 | None:intergenic | 40.0% | |
| TGCCACCTTCTATTCTTAGT+CGG | + | chr3_4:61169724-61169743 | Msa0511570:CDS | 40.0% | |
| ATACCCCGACTAAGAATAGA+AGG | - | chr3_4:61169732-61169751 | None:intergenic | 40.0% | |
| TCTATTCTTAGTCGGGGTAT+TGG | + | chr3_4:61169732-61169751 | Msa0511570:CDS | 40.0% | |
| ! | ATTTATGCTTGTTAGGGGGT+TGG | + | chr3_4:61169905-61169924 | Msa0511570:intron | 40.0% |
| GTTTCAGTCTTACACAGACA+CGG | - | chr3_4:61169972-61169991 | None:intergenic | 40.0% | |
| !!! | CAGAGAAAATGCTGGTCTTT+TGG | + | chr3_4:61170075-61170094 | Msa0511570:intron | 40.0% |
| TACAATGCAGCAATGATTGC+AGG | - | chr3_4:61170311-61170330 | None:intergenic | 40.0% | |
| ! | CCGCAACAAATGCTTTTGAT+TGG | - | chr3_4:61170859-61170878 | None:intergenic | 40.0% |
| GGACAAGTACAAGTCATTCA+AGG | + | chr3_4:61170958-61170977 | Msa0511570:CDS | 40.0% | |
| TAGAGTGGAGACTACTCATA+TGG | - | chr3_4:61171150-61171169 | None:intergenic | 40.0% | |
| GATTAAGAAGCTATGGCAGG+AGG | + | chr3_4:61165444-61165463 | Msa0511570:exon | 45.0% | |
| ! | AGTTGATCCTTTGGTGGATG+TGG | - | chr3_4:61165504-61165523 | None:intergenic | 45.0% |
| ACTAAGGAAAAGGAGAGGCT+GGG | - | chr3_4:61166417-61166436 | None:intergenic | 45.0% | |
| TACTAAGGAAAAGGAGAGGC+TGG | - | chr3_4:61166418-61166437 | None:intergenic | 45.0% | |
| ATCTGAGGAACAAGAGCAGT+GGG | - | chr3_4:61166577-61166596 | None:intergenic | 45.0% | |
| ACTGCTCTTGTTCCTCAGAT+GGG | + | chr3_4:61166577-61166596 | Msa0511570:CDS | 45.0% | |
| AGATGGGAGGTGGAAATGTA+AGG | + | chr3_4:61166593-61166612 | Msa0511570:intron | 45.0% | |
| CGATTACCTGCAGTAATTGG+AGG | + | chr3_4:61166780-61166799 | Msa0511570:CDS | 45.0% | |
| TAAGACCCTCCAATTACTGC+AGG | - | chr3_4:61166789-61166808 | None:intergenic | 45.0% | |
| GATAAGACCTCAATCGGATC+TGG | - | chr3_4:61166867-61166886 | None:intergenic | 45.0% | |
| AAGATAATGAGGGCAGTCCA+GGG | + | chr3_4:61167497-61167516 | Msa0511570:CDS | 45.0% | |
| !! | AAGCAACAATAAGAGCACCC+TGG | - | chr3_4:61167517-61167536 | None:intergenic | 45.0% |
| ! | TACTAGGCTTTAGTGGCCTT+TGG | + | chr3_4:61167552-61167571 | Msa0511570:CDS | 45.0% |
| ACCTTGCAACATTACGCCAA+AGG | - | chr3_4:61167571-61167590 | None:intergenic | 45.0% | |
| TTGGCGTAATGTTGCAAGGT+TGG | + | chr3_4:61167571-61167590 | Msa0511570:intron | 45.0% | |
| TCCACTTTCAGCTGTTCCAT+TGG | + | chr3_4:61167830-61167849 | Msa0511570:CDS | 45.0% | |
| ACCAATGGAACAGCTGAAAG+TGG | - | chr3_4:61167834-61167853 | None:intergenic | 45.0% | |
| CACCGTAAACATGTAGTCGA+AGG | - | chr3_4:61167905-61167924 | None:intergenic | 45.0% | |
| CTTCGACTACATGTTTACGG+TGG | + | chr3_4:61167903-61167922 | Msa0511570:intron | 45.0% | |
| CTCAACATCGATGCTTGTGT+TGG | + | chr3_4:61167954-61167973 | Msa0511570:intron | 45.0% | |
| ACTGCCAGAGCTTATATTGC+TGG | + | chr3_4:61168006-61168025 | Msa0511570:CDS | 45.0% | |
| TGTGCCACATGTGTTGCATT+CGG | + | chr3_4:61168190-61168209 | Msa0511570:CDS | 45.0% | |
| TTTCCCGAATGCAACACATG+TGG | - | chr3_4:61168197-61168216 | None:intergenic | 45.0% | |
| CTGTTCTACTCACTGTTGGA+GGG | + | chr3_4:61168273-61168292 | Msa0511570:CDS | 45.0% | |
| TGTTCTACTCACTGTTGGAG+GGG | + | chr3_4:61168274-61168293 | Msa0511570:CDS | 45.0% | |
| TTTCGGTGGAGAACCGTTAT+AGG | - | chr3_4:61168300-61168319 | None:intergenic | 45.0% | |
| ATTGGGTCCTTATCATGGCA+GGG | - | chr3_4:61168501-61168520 | None:intergenic | 45.0% | |
| AATTGGGTCCTTATCATGGC+AGG | - | chr3_4:61168502-61168521 | None:intergenic | 45.0% | |
| ! | GCACTGATAAAACCCAGTTC+CGG | - | chr3_4:61169153-61169172 | None:intergenic | 45.0% |
| !! | GACTGTTTCTATCTCCCTTG+AGG | - | chr3_4:61169402-61169421 | None:intergenic | 45.0% |
| TTCTATTCAATTGCCAGGGG+CGG | + | chr3_4:61169481-61169500 | Msa0511570:intron | 45.0% | |
| TACAGCAATGAAAGCTCCAG+TGG | - | chr3_4:61169679-61169698 | None:intergenic | 45.0% | |
| GCCACCTTCTATTCTTAGTC+GGG | + | chr3_4:61169725-61169744 | Msa0511570:CDS | 45.0% | |
| CCACCTTCTATTCTTAGTCG+GGG | + | chr3_4:61169726-61169745 | Msa0511570:CDS | 45.0% | |
| !! | TTCTTAGTCGGGGTATTGGT+TGG | + | chr3_4:61169736-61169755 | Msa0511570:CDS | 45.0% |
| TTTCCCTGCAGAGAAAATGC+TGG | + | chr3_4:61170067-61170086 | Msa0511570:intron | 45.0% | |
| ! | AGACCAGCATTTTCTCTGCA+GGG | - | chr3_4:61170073-61170092 | None:intergenic | 45.0% |
| ! | AAGACCAGCATTTTCTCTGC+AGG | - | chr3_4:61170074-61170093 | None:intergenic | 45.0% |
| AGAGTTGTGCAGATATCTGC+TGG | + | chr3_4:61170121-61170140 | Msa0511570:CDS | 45.0% | |
| AATGATTGCAGGTGGGATAG+AGG | - | chr3_4:61170300-61170319 | None:intergenic | 45.0% | |
| ATGCAGCAATGATTGCAGGT+GGG | - | chr3_4:61170307-61170326 | None:intergenic | 45.0% | |
| AATGCAGCAATGATTGCAGG+TGG | - | chr3_4:61170308-61170327 | None:intergenic | 45.0% | |
| CATTCATCATTTGCAGGAGC+TGG | + | chr3_4:61170444-61170463 | Msa0511570:intron | 45.0% | |
| GAAAGGACAGAGGCAAACAT+TGG | + | chr3_4:61170933-61170952 | Msa0511570:CDS | 45.0% | |
| AATGCATTGCTTGGTCATGG+GGG | - | chr3_4:61171312-61171331 | None:intergenic | 45.0% | |
| !! | AATTAAAAAATATATTATTC+AGG | + | chr3_4:61166227-61166246 | Msa0511570:intron | 5.0% |
| !!! | TTTTAAATAAGTTTTTAATT+GGG | - | chr3_4:61168518-61168537 | None:intergenic | 5.0% |
| !!! | TTTTTAAATAAGTTTTTAAT+TGG | - | chr3_4:61168519-61168538 | None:intergenic | 5.0% |
| TAAGAAGCTATGGCAGGAGG+AGG | + | chr3_4:61165447-61165466 | Msa0511570:exon | 50.0% | |
| ACCACAACCACATCCACCAA+AGG | + | chr3_4:61165494-61165513 | Msa0511570:CDS | 50.0% | |
| ! | TCCTTTGGTGGATGTGGTTG+TGG | - | chr3_4:61165498-61165517 | None:intergenic | 50.0% |
| GCATTACTAGTCCTCCTCCA+TGG | + | chr3_4:61165541-61165560 | Msa0511570:CDS | 50.0% | |
| AGAAACTAACGCCATGGAGG+AGG | - | chr3_4:61165555-61165574 | None:intergenic | 50.0% | |
| !! | GGGACATTTTGATGCAGCTG+AGG | + | chr3_4:61166495-61166514 | Msa0511570:intron | 50.0% |
| CATCTGAGGAACAAGAGCAG+TGG | - | chr3_4:61166578-61166597 | None:intergenic | 50.0% | |
| CACTGCTCTTGTTCCTCAGA+TGG | + | chr3_4:61166576-61166595 | Msa0511570:CDS | 50.0% | |
| ACATTTCCACCTCCCATCTG+AGG | - | chr3_4:61166592-61166611 | None:intergenic | 50.0% | |
| CGACACGTGTCCAAAACAAG+GGG | - | chr3_4:61167249-61167268 | None:intergenic | 50.0% | |
| GCGACACGTGTCCAAAACAA+GGG | - | chr3_4:61167250-61167269 | None:intergenic | 50.0% | |
| GAAGATAATGAGGGCAGTCC+AGG | + | chr3_4:61167496-61167515 | Msa0511570:CDS | 50.0% | |
| GCCTTTGGCGTAATGTTGCA+AGG | + | chr3_4:61167567-61167586 | Msa0511570:CDS | 50.0% | |
| TCGATGCTTGTGTTGGGTGT+AGG | + | chr3_4:61167961-61167980 | Msa0511570:intron | 50.0% | |
| GTGCCACATGTGTTGCATTC+GGG | + | chr3_4:61168191-61168210 | Msa0511570:CDS | 50.0% | |
| GCTGTTCTACTCACTGTTGG+AGG | + | chr3_4:61168272-61168291 | Msa0511570:CDS | 50.0% | |
| ACTGTTGGAGGGGCCTATAA+CGG | + | chr3_4:61168284-61168303 | Msa0511570:CDS | 50.0% | |
| ! | CAGGATGTCTGTGTTTTCGG+TGG | - | chr3_4:61168314-61168333 | None:intergenic | 50.0% |
| ! | CGGCAGGATGTCTGTGTTTT+CGG | - | chr3_4:61168317-61168336 | None:intergenic | 50.0% |
| GACTTGTAGATGCTGCTCCT+TGG | + | chr3_4:61168351-61168370 | Msa0511570:CDS | 50.0% | |
| ATTGGTCCCCTGCCATGATA+AGG | + | chr3_4:61168491-61168510 | Msa0511570:intron | 50.0% | |
| TTGGGTCCTTATCATGGCAG+GGG | - | chr3_4:61168500-61168519 | None:intergenic | 50.0% | |
| GCTCCCCATTGAAAGGGATA+TGG | - | chr3_4:61168946-61168965 | None:intergenic | 50.0% | |
| GTAGGTGCTCCCCATTGAAA+GGG | - | chr3_4:61168952-61168971 | None:intergenic | 50.0% | |
| TGTAGGTGCTCCCCATTGAA+AGG | - | chr3_4:61168953-61168972 | None:intergenic | 50.0% | |
| ! | GGAGCACCTACATTTGATGC+AGG | + | chr3_4:61168961-61168980 | Msa0511570:CDS | 50.0% |
| GCTTCGCCTGCATCAAATGT+AGG | - | chr3_4:61168970-61168989 | None:intergenic | 50.0% | |
| ! | CGAAGCGTTTGCCATGATGA+TGG | + | chr3_4:61168984-61169003 | Msa0511570:CDS | 50.0% |
| TCTATTCAATTGCCAGGGGC+GGG | + | chr3_4:61169482-61169501 | Msa0511570:intron | 50.0% | |
| CCCCGACTAAGAATAGAAGG+TGG | - | chr3_4:61169729-61169748 | None:intergenic | 50.0% | |
| ! | GGGGTTGGCATTCTTCTATC+TGG | + | chr3_4:61169920-61169939 | Msa0511570:CDS | 50.0% |
| !!! | CTTTTGGCTCTGACACGTGT+TGG | + | chr3_4:61170091-61170110 | Msa0511570:CDS | 50.0% |
| GGGAGAAATGTACTCGGATG+TGG | - | chr3_4:61170220-61170239 | None:intergenic | 50.0% | |
| TCATCATTTGCAGGAGCTGG+AGG | + | chr3_4:61170447-61170466 | Msa0511570:intron | 50.0% | |
| AGTCCACACAGGTGGAAGAT+GGG | + | chr3_4:61170599-61170618 | Msa0511570:CDS | 50.0% | |
| ATACCCATCTTCCACCTGTG+TGG | - | chr3_4:61170605-61170624 | None:intergenic | 50.0% | |
| ACACAGGTGGAAGATGGGTA+TGG | + | chr3_4:61170604-61170623 | Msa0511570:intron | 50.0% | |
| ! | AGCATTTGTTGCGGGTGTTG+TGG | + | chr3_4:61170865-61170884 | Msa0511570:CDS | 50.0% |
| AGGACAGAGGCAAACATTGG+TGG | + | chr3_4:61170936-61170955 | Msa0511570:CDS | 50.0% | |
| GGACAGAGGCAAACATTGGT+GGG | + | chr3_4:61170937-61170956 | Msa0511570:CDS | 50.0% | |
| CAAGGGTGACACAAGAAGTG+AGG | + | chr3_4:61170976-61170995 | Msa0511570:CDS | 50.0% | |
| GCAGCTGAGGCCATACTTCT+TGG | + | chr3_4:61166508-61166527 | Msa0511570:intron | 55.0% | |
| GCTCTTGTTCCTCAGATGGG+AGG | + | chr3_4:61166580-61166599 | Msa0511570:CDS | 55.0% | |
| CTTGTTCCTCAGATGGGAGG+TGG | + | chr3_4:61166583-61166602 | Msa0511570:CDS | 55.0% | |
| ! | TTGCTGCTTGTAGGCGGAGA+AGG | + | chr3_4:61166689-61166708 | Msa0511570:intron | 55.0% |
| GGCGACACGTGTCCAAAACA+AGG | - | chr3_4:61167251-61167270 | None:intergenic | 55.0% | |
| TGTAGTCGAAGGCTTACCCC+AGG | - | chr3_4:61167894-61167913 | None:intergenic | 55.0% | |
| CAAGTCCAGCACGATCAGTG+CGG | - | chr3_4:61168337-61168356 | None:intergenic | 55.0% | |
| CTATTCAATTGCCAGGGGCG+GGG | + | chr3_4:61169483-61169502 | Msa0511570:intron | 55.0% | |
| TATTCAATTGCCAGGGGCGG+GGG | + | chr3_4:61169484-61169503 | Msa0511570:intron | 55.0% | |
| !! | TAGTCGGGGTATTGGTTGGC+AGG | + | chr3_4:61169740-61169759 | Msa0511570:CDS | 55.0% |
| CATCTTCCACCTGTGTGGAC+TGG | - | chr3_4:61170600-61170619 | None:intergenic | 55.0% | |
| CAGTCCACACAGGTGGAAGA+TGG | + | chr3_4:61170598-61170617 | Msa0511570:CDS | 55.0% | |
| GAAGCTATGGCAGGAGGAGG+AGG | + | chr3_4:61165450-61165469 | Msa0511570:exon | 60.0% | |
| GGTTATGGGCCAGTCCACAC+AGG | + | chr3_4:61170588-61170607 | Msa0511570:CDS | 60.0% | |
| TATGGGCCAGTCCACACAGG+TGG | + | chr3_4:61170591-61170610 | Msa0511570:CDS | 60.0% | |
| ! | TCCTGCCGCACTGATCGTGC+TGG | + | chr3_4:61168329-61168348 | Msa0511570:CDS | 65.0% |
| TCCAGCACGATCAGTGCGGC+AGG | - | chr3_4:61168333-61168352 | None:intergenic | 65.0% | |
| AATTGCCAGGGGCGGGGGAT+TGG | + | chr3_4:61169489-61169508 | Msa0511570:intron | 65.0% | |
| TTTGACCAATCCCCCGCCCC+TGG | - | chr3_4:61169497-61169516 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 61165250 | 61171331 | 61165250 | ID=Msa0511570;Name=Msa0511570 |
| chr3_4 | mRNA | 61165250 | 61171331 | 61165250 | ID=Msa0511570-mRNA-1;Parent=Msa0511570;Name=Msa0511570-mRNA-1;_AED=0.15;_eAED=0.15;_QI=101|1|1|1|0.92|0.86|15|283|532 |
| chr3_4 | exon | 61165250 | 61165330 | 61165250 | ID=Msa0511570-mRNA-1:exon:14819;Parent=Msa0511570-mRNA-1 |
| chr3_4 | exon | 61165436 | 61165564 | 61165436 | ID=Msa0511570-mRNA-1:exon:14820;Parent=Msa0511570-mRNA-1 |
| chr3_4 | exon | 61166512 | 61166609 | 61166512 | ID=Msa0511570-mRNA-1:exon:14821;Parent=Msa0511570-mRNA-1 |
| chr3_4 | exon | 61166702 | 61166878 | 61166702 | ID=Msa0511570-mRNA-1:exon:14822;Parent=Msa0511570-mRNA-1 |
| chr3_4 | exon | 61167488 | 61167588 | 61167488 | ID=Msa0511570-mRNA-1:exon:14823;Parent=Msa0511570-mRNA-1 |
| chr3_4 | exon | 61167821 | 61167896 | 61167821 | ID=Msa0511570-mRNA-1:exon:14824;Parent=Msa0511570-mRNA-1 |
| chr3_4 | exon | 61167983 | 61168042 | 61167983 | ID=Msa0511570-mRNA-1:exon:14825;Parent=Msa0511570-mRNA-1 |
| chr3_4 | exon | 61168188 | 61168372 | 61168188 | ID=Msa0511570-mRNA-1:exon:14826;Parent=Msa0511570-mRNA-1 |
| chr3_4 | exon | 61168933 | 61169029 | 61168933 | ID=Msa0511570-mRNA-1:exon:14827;Parent=Msa0511570-mRNA-1 |
| chr3_4 | exon | 61169675 | 61169761 | 61169675 | ID=Msa0511570-mRNA-1:exon:14828;Parent=Msa0511570-mRNA-1 |
| chr3_4 | exon | 61169920 | 61169978 | 61169920 | ID=Msa0511570-mRNA-1:exon:14829;Parent=Msa0511570-mRNA-1 |
| chr3_4 | exon | 61170078 | 61170169 | 61170078 | ID=Msa0511570-mRNA-1:exon:14830;Parent=Msa0511570-mRNA-1 |
| chr3_4 | exon | 61170276 | 61170353 | 61170276 | ID=Msa0511570-mRNA-1:exon:14831;Parent=Msa0511570-mRNA-1 |
| chr3_4 | exon | 61170460 | 61170620 | 61170460 | ID=Msa0511570-mRNA-1:exon:14832;Parent=Msa0511570-mRNA-1 |
| chr3_4 | exon | 61170830 | 61171331 | 61170830 | ID=Msa0511570-mRNA-1:exon:14833;Parent=Msa0511570-mRNA-1 |
| chr3_4 | five_prime_UTR | 61165250 | 61165330 | 61165250 | ID=Msa0511570-mRNA-1:five_prime_utr;Parent=Msa0511570-mRNA-1 |
| chr3_4 | five_prime_UTR | 61165436 | 61165455 | 61165436 | ID=Msa0511570-mRNA-1:five_prime_utr;Parent=Msa0511570-mRNA-1 |
| chr3_4 | CDS | 61165456 | 61165564 | 61165456 | ID=Msa0511570-mRNA-1:cds;Parent=Msa0511570-mRNA-1 |
| chr3_4 | CDS | 61166512 | 61166609 | 61166512 | ID=Msa0511570-mRNA-1:cds;Parent=Msa0511570-mRNA-1 |
| chr3_4 | CDS | 61166702 | 61166878 | 61166702 | ID=Msa0511570-mRNA-1:cds;Parent=Msa0511570-mRNA-1 |
| chr3_4 | CDS | 61167488 | 61167588 | 61167488 | ID=Msa0511570-mRNA-1:cds;Parent=Msa0511570-mRNA-1 |
| chr3_4 | CDS | 61167821 | 61167896 | 61167821 | ID=Msa0511570-mRNA-1:cds;Parent=Msa0511570-mRNA-1 |
| chr3_4 | CDS | 61167983 | 61168042 | 61167983 | ID=Msa0511570-mRNA-1:cds;Parent=Msa0511570-mRNA-1 |
| chr3_4 | CDS | 61168188 | 61168372 | 61168188 | ID=Msa0511570-mRNA-1:cds;Parent=Msa0511570-mRNA-1 |
| chr3_4 | CDS | 61168933 | 61169029 | 61168933 | ID=Msa0511570-mRNA-1:cds;Parent=Msa0511570-mRNA-1 |
| chr3_4 | CDS | 61169675 | 61169761 | 61169675 | ID=Msa0511570-mRNA-1:cds;Parent=Msa0511570-mRNA-1 |
| chr3_4 | CDS | 61169920 | 61169978 | 61169920 | ID=Msa0511570-mRNA-1:cds;Parent=Msa0511570-mRNA-1 |
| chr3_4 | CDS | 61170078 | 61170169 | 61170078 | ID=Msa0511570-mRNA-1:cds;Parent=Msa0511570-mRNA-1 |
| chr3_4 | CDS | 61170276 | 61170353 | 61170276 | ID=Msa0511570-mRNA-1:cds;Parent=Msa0511570-mRNA-1 |
| chr3_4 | CDS | 61170460 | 61170620 | 61170460 | ID=Msa0511570-mRNA-1:cds;Parent=Msa0511570-mRNA-1 |
| chr3_4 | CDS | 61170830 | 61171048 | 61170830 | ID=Msa0511570-mRNA-1:cds;Parent=Msa0511570-mRNA-1 |
| chr3_4 | three_prime_UTR | 61171049 | 61171331 | 61171049 | ID=Msa0511570-mRNA-1:three_prime_utr;Parent=Msa0511570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
