AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0511800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511800 MtrunA17_Chr3g0118331 93.706 572 36 0 1 572 1 572 0.0 1103
Msa0511800 MtrunA17_Chr3g0118321 84.452 566 87 1 1 565 1 566 0.0 1005
Msa0511800 MtrunA17_Chr8g0382691 50.536 560 259 6 17 569 26 574 0.0 575
Msa0511800 MtrunA17_Chr3g0118351 72.174 345 72 2 251 572 1 344 1.03e-179 510
Msa0511800 MtrunA17_Chr3g0118341 82.564 195 33 1 1 194 1 195 1.74e-117 347
Msa0511800 MtrunA17_Chr5g0404361 32.509 566 326 17 1 544 58 589 5.56e-75 250
Msa0511800 MtrunA17_Chr7g0238941 31.874 571 318 16 7 540 16 552 1.22e-72 243
Msa0511800 MtrunA17_Chr5g0437681 30.903 576 335 18 1 544 1 545 5.58e-72 241
Msa0511800 MtrunA17_Chr7g0237491 31.570 567 333 14 7 542 14 556 1.18e-70 238
Msa0511800 MtrunA17_Chr3g0114211 31.399 586 332 21 2 554 12 560 2.29e-70 236
Msa0511800 MtrunA17_Chr5g0436461 31.655 556 333 13 6 544 7 532 5.32e-70 235
Msa0511800 MtrunA17_Chr5g0429511 32.504 563 328 18 4 545 6 537 2.12e-69 234
Msa0511800 MtrunA17_Chr7g0238351 31.349 571 337 15 2 540 8 555 2.67e-69 234
Msa0511800 MtrunA17_Chr5g0404341 31.107 569 333 18 1 545 12 545 6.44e-69 233
Msa0511800 MtrunA17_Chr7g0237441 31.173 571 332 17 4 540 11 554 3.57e-68 231
Msa0511800 MtrunA17_Chr2g0278811 32.007 578 331 21 12 544 25 585 2.69e-67 229
Msa0511800 MtrunA17_Chr4g0031901 32.246 552 302 22 25 540 44 559 5.35e-67 228
Msa0511800 MtrunA17_Chr4g0005921 31.004 558 334 17 7 544 9 535 8.86e-67 226
Msa0511800 MtrunA17_Chr3g0104061 32.342 538 323 14 22 544 23 534 4.24e-66 225
Msa0511800 MtrunA17_Chr5g0431581 31.429 560 329 20 9 541 4 535 1.54e-65 223
Msa0511800 MtrunA17_Chr7g0238981 31.469 572 325 17 21 555 43 584 4.91e-64 220
Msa0511800 MtrunA17_Chr8g0346581 29.891 552 319 21 25 544 34 549 1.28e-57 202
Msa0511800 MtrunA17_Chr8g0374271 29.084 557 329 19 25 565 31 537 1.76e-54 193
Msa0511800 MtrunA17_Chr7g0240991 28.476 597 349 24 7 562 3 562 2.00e-54 194
Msa0511800 MtrunA17_Chr4g0008521 28.064 563 326 19 24 544 25 550 4.02e-52 187
Msa0511800 MtrunA17_Chr7g0240971 27.496 571 330 22 18 544 18 548 6.11e-52 187
Msa0511800 MtrunA17_Chr3g0121151 27.241 580 357 18 7 567 49 582 1.82e-50 183
Msa0511800 MtrunA17_Chr5g0402831 29.264 557 319 18 25 562 31 531 2.86e-50 181
Msa0511800 MtrunA17_Chr4g0043251 26.289 582 363 19 7 567 7 543 4.05e-50 181
Msa0511800 MtrunA17_Chr3g0121161 27.241 580 357 18 7 567 49 582 6.50e-50 181
Msa0511800 MtrunA17_Chr3g0121171 27.241 580 357 18 7 567 584 1117 8.54e-49 183
Msa0511800 MtrunA17_Chr3g0121171 27.451 561 343 17 26 567 27 542 3.19e-48 181
Msa0511800 MtrunA17_Chr3g0121171 27.069 580 358 18 7 567 1159 1692 8.94e-48 180
Msa0511800 MtrunA17_Chr3g0121171 26.614 511 312 16 76 567 1792 2258 7.00e-43 165
Msa0511800 MtrunA17_Chr8g0374261 27.860 542 313 20 48 567 52 537 2.40e-48 176
Msa0511800 MtrunA17_Chr3g0118931 76.289 97 23 0 476 572 10 106 6.33e-48 162
Msa0511800 MtrunA17_Chr4g0056511 28.007 557 345 17 27 562 29 550 2.46e-47 174
Msa0511800 MtrunA17_Chr4g0024861 27.907 559 328 16 25 562 27 531 5.93e-47 172
Msa0511800 MtrunA17_Chr3g0079321 26.860 551 339 16 37 562 41 552 1.33e-46 172
Msa0511800 MtrunA17_Chr4g0038671 26.712 584 348 18 1 562 8 533 1.31e-45 169
Msa0511800 MtrunA17_Chr4g0075071 26.995 589 349 19 2 565 6 538 3.38e-45 167
Msa0511800 MtrunA17_Chr3g0143671 25.779 578 362 16 6 565 9 537 7.15e-45 167
Msa0511800 MtrunA17_Chr7g0234061 27.051 573 351 23 26 573 30 560 4.11e-44 166
Msa0511800 MtrunA17_Chr2g0322441 27.611 565 322 20 25 562 30 534 1.04e-43 163
Msa0511800 MtrunA17_Chr4g0043261 26.631 567 336 19 26 567 26 537 3.67e-43 162
Msa0511800 MtrunA17_Chr1g0157341 26.027 584 350 21 11 566 9 538 1.16e-41 157
Msa0511800 MtrunA17_Chr3g0133861 33.437 323 179 11 249 544 5 318 1.11e-35 137
Msa0511800 MtrunA17_Chr4g0024641 26.044 503 301 15 80 562 3 454 1.09e-32 134
Msa0511800 MtrunA17_Chr1g0197301 26.586 331 185 9 234 539 5 302 4.26e-26 109
Msa0511800 MtrunA17_Chr3g0133871 36.364 143 87 4 26 166 33 173 3.66e-22 95.5
Msa0511800 MtrunA17_Chr5g0436431 38.298 141 83 2 385 524 91 228 7.91e-20 88.6
Msa0511800 MtrunA17_Chr1g0197311 26.984 189 102 5 43 199 42 226 1.18e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511800 AT5G21105.1 64.211 570 200 2 9 574 19 588 0.0 787
Msa0511800 AT5G21105.3 64.615 520 180 2 9 524 19 538 0.0 716
Msa0511800 AT5G21100.1 60.932 558 210 5 17 570 16 569 0.0 711
Msa0511800 AT4G39830.1 49.911 563 257 8 19 566 30 582 0.0 576
Msa0511800 AT5G21105.2 63.824 387 139 1 189 574 11 397 0.0 534
Msa0511800 AT4G39830.2 49.697 495 224 8 87 566 3 487 4.28e-169 489
Msa0511800 AT4G39830.3 49.595 494 224 8 88 566 2 485 2.38e-168 487
Msa0511800 AT4G39830.4 47.475 495 222 9 87 566 3 474 2.27e-155 454
Msa0511800 AT5G05390.1 30.104 578 335 17 1 544 1 543 6.94e-71 238
Msa0511800 AT5G03260.1 32.620 561 324 18 7 544 6 535 1.38e-70 237
Msa0511800 AT5G09360.1 31.699 571 328 19 1 544 12 547 1.51e-68 232
Msa0511800 AT5G58910.2 31.227 554 311 18 24 544 29 545 1.02e-66 227
Msa0511800 AT2G29130.1 32.456 570 327 19 1 540 6 547 2.41e-65 223
Msa0511800 AT5G58910.3 31.227 554 310 19 24 544 29 544 4.04e-65 223
Msa0511800 AT5G48100.1 30.728 563 326 19 14 544 11 541 9.73e-65 222
Msa0511800 AT2G30210.1 30.939 543 300 18 40 544 43 548 5.30e-64 220
Msa0511800 AT5G07130.1 31.304 575 336 18 1 544 1 547 1.08e-63 219
Msa0511800 AT3G09220.1 30.195 563 333 19 12 544 13 545 2.16e-63 218
Msa0511800 AT5G01050.1 29.877 569 330 19 10 544 13 546 3.29e-63 218
Msa0511800 AT2G40370.1 28.736 609 352 19 1 559 1 577 1.49e-62 216
Msa0511800 AT5G01040.1 29.123 570 331 17 10 544 13 544 1.36e-61 214
Msa0511800 AT5G60020.1 30.345 580 333 21 1 540 3 551 2.72e-60 210
Msa0511800 AT1G18140.1 29.897 582 332 21 20 559 24 571 3.57e-60 210
Msa0511800 AT2G38080.1 30.442 565 332 20 8 544 5 536 7.02e-59 206
Msa0511800 AT5G60020.3 30.499 541 307 19 40 540 8 519 2.72e-56 198
Msa0511800 AT5G58910.1 29.795 537 302 18 40 544 8 501 3.16e-56 198
Msa0511800 AT5G01190.1 30.000 540 332 15 24 544 24 536 3.89e-56 198
Msa0511800 AT2G46570.1 28.468 555 329 20 22 544 29 547 5.61e-56 198
Msa0511800 AT5G01190.2 30.250 519 316 15 45 544 31 522 9.61e-54 191
Msa0511800 AT5G60020.2 29.787 564 325 21 1 524 3 535 4.99e-53 189
Msa0511800 AT1G55570.1 29.004 562 324 21 26 562 30 541 1.10e-51 186
Msa0511800 AT1G75790.1 27.627 590 348 21 4 562 1 542 6.88e-50 181
Msa0511800 AT4G22010.1 28.330 533 311 16 25 540 26 504 3.73e-49 179
Msa0511800 AT4G12420.1 26.596 564 354 18 27 567 27 553 9.32e-49 179
Msa0511800 AT4G12420.2 26.596 564 354 18 27 567 27 553 9.32e-49 179
Msa0511800 AT5G66920.1 26.857 525 324 13 25 539 37 511 2.35e-48 177
Msa0511800 AT3G13390.1 28.648 562 326 22 26 562 29 540 4.90e-47 173
Msa0511800 AT1G21860.1 27.526 574 337 20 16 565 16 534 1.68e-46 171
Msa0511800 AT5G51480.1 26.998 563 353 20 27 567 30 556 1.90e-46 172
Msa0511800 AT4G37160.1 25.494 557 348 16 27 566 33 539 3.88e-46 171
Msa0511800 AT1G21850.1 26.850 581 351 19 4 562 3 531 5.00e-46 170
Msa0511800 AT5G07130.2 30.435 483 283 15 91 544 4 462 6.66e-46 169
Msa0511800 AT5G07130.3 30.435 483 283 15 91 544 4 462 6.66e-46 169
Msa0511800 AT4G25240.2 27.087 587 368 19 4 567 7 556 6.91e-46 171
Msa0511800 AT4G25240.1 27.087 587 368 19 4 567 7 556 6.91e-46 171
Msa0511800 AT5G48450.2 25.773 582 368 18 9 567 8 548 3.42e-45 169
Msa0511800 AT5G48450.1 25.773 582 368 18 9 567 8 548 3.94e-45 169
Msa0511800 AT4G28090.1 28.205 585 337 21 9 565 9 538 8.22e-45 167
Msa0511800 AT2G23630.2 27.207 555 332 19 27 562 37 538 2.74e-44 166
Msa0511800 AT2G23630.1 27.207 555 332 19 27 562 32 533 3.45e-44 165
Msa0511800 AT3G09220.2 28.992 476 279 18 99 544 2 448 1.66e-42 159
Msa0511800 AT2G46570.2 27.733 494 290 19 83 544 4 462 4.35e-42 158
Msa0511800 AT1G76160.1 24.786 585 362 17 5 565 4 534 4.66e-41 156
Msa0511800 AT1G41830.1 24.590 549 343 15 7 539 11 504 2.27e-38 149
Msa0511800 AT4G38420.1 24.691 567 348 20 25 565 30 543 9.41e-36 141
Msa0511800 AT3G13400.2 25.403 559 347 19 26 562 28 538 1.20e-35 141
Msa0511800 AT3G13400.1 25.403 559 347 19 26 562 28 538 1.20e-35 141
Msa0511800 AT4G37160.2 25.536 466 286 13 27 480 33 449 4.80e-35 137
Msa0511800 AT1G55560.1 25.225 555 347 20 29 562 30 537 6.85e-35 139
Msa0511800 AT4G38420.3 24.554 505 307 18 25 508 30 481 6.30e-28 117
Msa0511800 AT4G38420.2 24.684 474 290 16 25 480 30 454 5.41e-27 114

Find 155 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGAGGGTGTTCATAAAAT+TGG 0.123058 3_4:+61465083 Msa0511800:CDS
AAATTGGTAATTTCACTAAA+TGG 0.152630 3_4:+61464580 Msa0511800:CDS
TTGGACTGCCTTGAGGTTTA+AGG 0.215858 3_4:+61464986 Msa0511800:CDS
AAAACACTCTTAGGAGATTA+AGG 0.220574 3_4:-61465201 None:intergenic
TGGCTGTGGTGTTCCCATTC+TGG 0.232383 3_4:-61464511 None:intergenic
CTCAGTTGTGGGTGTTGTTT+AGG 0.244247 3_4:-61465154 None:intergenic
CTCAACACACAAAGCAAAAT+TGG 0.244299 3_4:+61464564 Msa0511800:CDS
GCCTTCATGAATAATATATA+GGG 0.245236 3_4:+61465344 Msa0511800:three_prime_UTR
TATTATAGTTAAGGATTGTT+AGG 0.255819 3_4:-61464392 None:intergenic
TTTAAGTTATCATCACATTA+TGG 0.289067 3_4:+61465245 Msa0511800:three_prime_UTR
GTGATTGGTGGTGGTAATAT+AGG 0.293720 3_4:-61464435 None:intergenic
AGGCAGATAATCCTGGTGTT+TGG 0.306448 3_4:+61465006 Msa0511800:CDS
CGCCTTCATGAATAATATAT+AGG 0.309688 3_4:+61465343 Msa0511800:three_prime_UTR
CGATTGAGAGCCAGTAGTTT+TGG 0.310798 3_4:-61464335 None:intergenic
TGGCGCTACTTCGAGAATCT+TGG 0.314451 3_4:-61463540 None:intergenic
GTTGTTGTACTTGGATTAAC+TGG 0.316563 3_4:-61464735 None:intergenic
CCGTCACCGGTTGTTGTACT+TGG 0.331995 3_4:-61464744 None:intergenic
CAGGGTTTGTATTATAGTTA+AGG 0.342158 3_4:-61464401 None:intergenic
GTTCACCAACCCATCTCATT+GGG 0.342539 3_4:-61461143 None:intergenic
TTTGTTTGGTGTATATGGTT+AGG 0.348547 3_4:+61458921 Msa0511800:CDS
GGCAGATAATCCTGGTGTTT+GGG 0.350012 3_4:+61465007 Msa0511800:CDS
AATGGCTCGCTTTGGTTGTT+TGG 0.353112 3_4:-61461036 None:intergenic
CCGAGGGTGTTCATAAAATT+GGG 0.361256 3_4:+61465084 Msa0511800:CDS
TTGTTTGGTGTATATGGTTA+GGG 0.363068 3_4:+61458922 Msa0511800:CDS
CACCACCAATCACTCCCTTA+TGG 0.366354 3_4:+61464445 Msa0511800:CDS
TATTGAACCACATTTGCATC+TGG 0.366511 3_4:+61465043 Msa0511800:CDS
GGAATCAATGGTCAGTTTCC+TGG 0.370438 3_4:+61459038 Msa0511800:CDS
AATTGGTAATTTCACTAAAT+GGG 0.374827 3_4:+61464581 Msa0511800:CDS
TTAAATATGTCGAAATCAAA+TGG 0.374923 3_4:-61464708 None:intergenic
TATCATCACATTATGGCCTA+TGG 0.384084 3_4:+61465252 Msa0511800:three_prime_UTR
TGATTGGTGGTGGTAATATA+GGG 0.386257 3_4:-61464434 None:intergenic
GGCGCTACTTCGAGAATCTT+GGG 0.392401 3_4:-61463539 None:intergenic
TATTTGATTGCTCCTAAGTA+AGG 0.405813 3_4:-61464639 None:intergenic
TTTGCAGATTGGAACTCCTT+GGG 0.407622 3_4:+61460654 Msa0511800:intron
CTTTGAAATTGCATTGAGGC+AGG 0.417474 3_4:-61463499 None:intergenic
TATTTCTATCATGGACACTA+TGG 0.424783 3_4:+61460967 Msa0511800:CDS
TCCCTCTGTAGAGAGCTTGT+TGG 0.428234 3_4:-61459108 None:intergenic
CTCTTCAGCCCCAATGAGAT+GGG 0.429001 3_4:+61461134 Msa0511800:CDS
AAATCAAATGGGAATCTATC+TGG 0.430172 3_4:-61464696 None:intergenic
CTGTAATGAAAAGTTTCTCC+TGG 0.432582 3_4:-61460715 None:intergenic
CATAATGAAATGGCTCGCTT+TGG 0.432881 3_4:-61461044 None:intergenic
AACTCACCATCATAATGAAA+TGG 0.432896 3_4:-61461054 None:intergenic
GGTTCACCAACCCATCTCAT+TGG 0.433465 3_4:-61461144 None:intergenic
ATTTGACACGTGCACCTTTG+AGG 0.440703 3_4:+61464937 Msa0511800:CDS
AGCGAGCCATTTCATTATGA+TGG 0.443509 3_4:+61461048 Msa0511800:CDS
CAGAGAGCAGCAGGGTTGTA+TGG 0.444015 3_4:+61460994 Msa0511800:CDS
ATTGGAACTCCTTGGGCTGA+TGG 0.447081 3_4:+61460661 Msa0511800:CDS
CCAACTTCAGCTCTAATAGT+TGG 0.449801 3_4:-61459062 None:intergenic
ATTACAGATTCATTGTTGAC+AGG 0.449902 3_4:+61460731 Msa0511800:CDS
TCTCTTCAGCCCCAATGAGA+TGG 0.452079 3_4:+61461133 Msa0511800:CDS
AAACAAATCATTTCCAGAAT+GGG 0.453424 3_4:+61464498 Msa0511800:CDS
ATTATAGTTAAGGATTGTTA+GGG 0.461154 3_4:-61464391 None:intergenic
ACAACATGCTCTATGCAATC+TGG 0.461692 3_4:-61459011 None:intergenic
CATTTACACAAACAATCTAA+AGG 0.461718 3_4:+61458838 Msa0511800:five_prime_UTR
TCTATGCTATCAACTGTGAA+TGG 0.462571 3_4:-61464258 None:intergenic
GCTCCTAAGTAAGGTGTTGT+TGG 0.466012 3_4:-61464630 None:intergenic
GGTGTTGTTTAGGAACATCT+TGG 0.466856 3_4:-61465144 None:intergenic
CAAAACTACTGGCTCTCAAT+CGG 0.470995 3_4:+61464336 Msa0511800:CDS
TTAAGGATTGTTAGGGCTTG+TGG 0.473400 3_4:-61464384 None:intergenic
CCTGGTACATATTTCTATCA+TGG 0.478578 3_4:+61460958 Msa0511800:CDS
AAAACAAATCATTTCCAGAA+TGG 0.478795 3_4:+61464497 Msa0511800:CDS
CAGTTATATTTCCGTATGGT+TGG 0.481410 3_4:+61464967 Msa0511800:CDS
TATGGTATGCAGAGAGCAGC+AGG 0.482439 3_4:+61460985 Msa0511800:CDS
GTTCATCCATGGCATTTACA+TGG 0.485885 3_4:+61464846 Msa0511800:CDS
ACCACATTTGCATCTGGGAA+TGG 0.487721 3_4:+61465049 Msa0511800:CDS
TAAATATGTCGAAATCAAAT+GGG 0.488708 3_4:-61464707 None:intergenic
CGCTCGAAATCGTTCCATAA+GGG 0.490554 3_4:-61464459 None:intergenic
CAACTTCAGCTCTAATAGTT+GGG 0.494195 3_4:-61459061 None:intergenic
AATATAGGGAAAGTTGAGGC+AGG 0.496705 3_4:-61464420 None:intergenic
ACTCTTAGGAGATTAAGGTT+TGG 0.497652 3_4:-61465196 None:intergenic
GCGCTCGAAATCGTTCCATA+AGG 0.499345 3_4:-61464460 None:intergenic
AGCTTAGCTAGTCTCAGTTG+TGG 0.500207 3_4:-61465166 None:intergenic
TCGTTCCATAAGGGAGTGAT+TGG 0.500888 3_4:-61464450 None:intergenic
TTGCCAACAACACCTTACTT+AGG 0.501600 3_4:+61464627 Msa0511800:CDS
TAGGGTCTTGGTCCGTGTGT+AGG 0.506134 3_4:-61464311 None:intergenic
AGGTTTAAGGCAGATAATCC+TGG 0.507556 3_4:+61464999 Msa0511800:CDS
GTCCTTAGCTTCTCTCAACT+TGG 0.508173 3_4:+61463598 Msa0511800:CDS
GCTTAGCTAGTCTCAGTTGT+GGG 0.510640 3_4:-61465165 None:intergenic
ATGAAGGCGAGTTGGACAAA+TGG 0.513487 3_4:-61465329 None:intergenic
CCCCTATATATTATTCATGA+AGG 0.517133 3_4:-61465345 None:intergenic
ATTGAACCACATTTGCATCT+GGG 0.517905 3_4:+61465044 Msa0511800:CDS
GTTAATCCAAGTACAACAAC+CGG 0.521421 3_4:+61464738 Msa0511800:CDS
ATCTGCTCCTTAGTGATCTG+TGG 0.529687 3_4:+61461079 Msa0511800:CDS
TGTTCACGAAATTAGCTGCT+AGG 0.529978 3_4:-61463472 None:intergenic
AAACGTGTAAACACCGTCAC+CGG 0.533373 3_4:-61464757 None:intergenic
CCACATTTGCATCTGGGAAT+GGG 0.538253 3_4:+61465050 Msa0511800:CDS
CCCATTCCCAGATGCAAATG+TGG 0.540042 3_4:-61465050 None:intergenic
TTCCATAAGGGAGTGATTGG+TGG 0.540746 3_4:-61464447 None:intergenic
CAGAGGGAACTGTTATTCAC+TGG 0.541203 3_4:+61459123 Msa0511800:CDS
CTGTAGAGAGCTTGTTGGTG+AGG 0.542415 3_4:-61459103 None:intergenic
ATCATCACATTATGGCCTAT+GGG 0.543071 3_4:+61465253 Msa0511800:three_prime_UTR
TATTATTCATGAAGGCGAGT+TGG 0.544595 3_4:-61465337 None:intergenic
AGCTTGCTCATCAATGGAAG+AGG 0.544734 3_4:+61463434 Msa0511800:CDS
GGCCAAGTTGAGAGAAGCTA+AGG 0.545213 3_4:-61463600 None:intergenic
TCTCAGTGTGCTATAAATCC+AGG 0.546219 3_4:+61460697 Msa0511800:CDS
CTATGCTATCAACTGTGAAT+GGG 0.547107 3_4:-61464257 None:intergenic
CAATGAAATGCCCAAACACC+AGG 0.551729 3_4:-61465017 None:intergenic
AAGACCCTAACCAAAACTAC+TGG 0.556747 3_4:+61464325 Msa0511800:CDS
TCAGCTCTAATAGTTGGGCC+AGG 0.557489 3_4:-61459056 None:intergenic
GTTCACGAAATTAGCTGCTA+GGG 0.560510 3_4:-61463471 None:intergenic
TTACAGATTCATTGTTGACA+GGG 0.563984 3_4:+61460732 Msa0511800:CDS
CTCAAGGCAGTCCAACCATA+CGG 0.564160 3_4:-61464978 None:intergenic
GGAACTGTTATTCACTGGCA+TGG 0.565221 3_4:+61459128 Msa0511800:CDS
ACTGCAGTTATATTTCCGTA+TGG 0.567332 3_4:+61464963 Msa0511800:CDS
TCAGCCCCAATGAGATGGGT+TGG 0.567659 3_4:+61461138 Msa0511800:CDS
AATGGGAATCTATCTGGTGG+TGG 0.568086 3_4:-61464690 None:intergenic
CCATGATAGAAATATGTACC+AGG 0.570980 3_4:-61460958 None:intergenic
CCAACTATTAGAGCTGAAGT+TGG 0.572309 3_4:+61459062 Msa0511800:CDS
CTGCCTCAATGCAATTTCAA+AGG 0.573833 3_4:+61463500 Msa0511800:CDS
CGTATGGTTGGACTGCCTTG+AGG 0.574817 3_4:+61464979 Msa0511800:CDS
CATAAGGGAGTGATTGGTGG+TGG 0.576952 3_4:-61464444 None:intergenic
CATGTTGTGATGGGAATCAA+TGG 0.578474 3_4:+61459026 Msa0511800:CDS
TTACACGTTTCACTTAAATG+AGG 0.579316 3_4:+61464770 Msa0511800:CDS
TTGCATAGAGCATGTTGTGA+TGG 0.579841 3_4:+61459016 Msa0511800:CDS
ATCTCATTGGGGCTGAAGAG+AGG 0.581211 3_4:-61461131 None:intergenic
GAGATGGGTTGGTGAACCAC+AGG 0.584866 3_4:+61461149 Msa0511800:CDS
ATATAGGGAAAGTTGAGGCA+GGG 0.586056 3_4:-61464419 None:intergenic
ACTAGCAATCCTAATTCTGT+AGG 0.586808 3_4:-61463570 None:intergenic
ATAACTGCAGTGTTCCTCAA+AGG 0.587942 3_4:-61464951 None:intergenic
TCACTGGCATGGAATCAGAC+AGG 0.589797 3_4:+61459139 Msa0511800:CDS
CTTGTTGTGGTGGAAGCAGA+TGG 0.595035 3_4:+61464222 Msa0511800:CDS
CACAAGTTCACAAGAACAAG+AGG 0.595059 3_4:+61461104 Msa0511800:CDS
TGCATAGAGCATGTTGTGAT+GGG 0.595383 3_4:+61459017 Msa0511800:CDS
CCACCTTTGAAATTGCATTG+AGG 0.597277 3_4:-61463503 None:intergenic
TCATGTCCATGTAAATGCCA+TGG 0.598058 3_4:-61464852 None:intergenic
TTTGAAATTGCATTGAGGCA+GGG 0.606053 3_4:-61463498 None:intergenic
CGTGTGTAGGAGTACTGAGT+AGG 0.606716 3_4:-61464298 None:intergenic
CCAAGTACAACAACCGGTGA+CGG 0.607835 3_4:+61464744 Msa0511800:CDS
ACCAACAAGCTCTCTACAGA+GGG 0.609788 3_4:+61459107 Msa0511800:CDS
GAATCACACACTTGTTGTGG+TGG 0.612070 3_4:+61464212 Msa0511800:intron
CCTCAATGCAATTTCAAAGG+TGG 0.612230 3_4:+61463503 Msa0511800:CDS
CCTACACATGCTCTTACTTG+TGG 0.613192 3_4:+61465113 Msa0511800:CDS
TTCACCAACCCATCTCATTG+GGG 0.616416 3_4:-61461142 None:intergenic
ATTATCTGCCTTAAACCTCA+AGG 0.620971 3_4:-61464994 None:intergenic
AGTTCACAAGAACAAGAGGT+TGG 0.621180 3_4:+61461108 Msa0511800:CDS
CCTTCATGAATAATATATAG+GGG 0.621956 3_4:+61465345 Msa0511800:three_prime_UTR
ATAGAATCACACACTTGTTG+TGG 0.622617 3_4:+61464209 Msa0511800:intron
ATACTAGTGAAGTTCATCCA+TGG 0.627356 3_4:+61464835 Msa0511800:CDS
GAAACACTACAAGTTTGATG+TGG 0.628408 3_4:+61458971 Msa0511800:CDS
TTGTGTGCCACAGATCACTA+AGG 0.628431 3_4:-61461086 None:intergenic
GATAGCATAGACATCTACTC+AGG 0.630424 3_4:+61464270 Msa0511800:CDS
CTACTCAGTACTCCTACACA+CGG 0.634277 3_4:+61464299 Msa0511800:CDS
ATCACATTATGGCCTATGGG+TGG 0.634976 3_4:+61465256 Msa0511800:three_prime_UTR
GCTTGCTCATCAATGGAAGA+GGG 0.643075 3_4:+61463435 Msa0511800:CDS
GCAGCAGTTCCATCAGCCCA+AGG 0.643166 3_4:-61460670 None:intergenic
CACCAACAAGCTCTCTACAG+AGG 0.649123 3_4:+61459106 Msa0511800:CDS
TCAAATGGGAATCTATCTGG+TGG 0.659562 3_4:-61464693 None:intergenic
AACAAAGCAAAACCACCCAT+AGG 0.682005 3_4:-61465268 None:intergenic
TGGTAATATAGGGAAAGTTG+AGG 0.684103 3_4:-61464424 None:intergenic
CCACAAGTAAGAGCATGTGT+AGG 0.697143 3_4:-61465113 None:intergenic
ATGGTATGCAGAGAGCAGCA+GGG 0.701650 3_4:+61460986 Msa0511800:CDS
GAAATTGCATTGAGGCAGGG+TGG 0.703546 3_4:-61463495 None:intergenic
GGTGAAGGGATATTTCAACC+AGG 0.713622 3_4:+61464894 Msa0511800:CDS
GTTGGTGAGGTCAATGACAA+CGG 0.719426 3_4:-61459090 None:intergenic
TGTTGAGGAGGTAAATTGTG+CGG 0.723525 3_4:-61464548 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCAACATAAAAAAT+AGG - chr3_4:61459648-61459667 None:intergenic 10.0%
!! AAAAAAACAAAAAATGTATA+AGG - chr3_4:61460592-61460611 None:intergenic 10.0%
!! TTTGTAATAATATAATAACT+AGG + chr3_4:61460885-61460904 Msa0511800:intron 10.0%
!! TTGTAATAATATAATAACTA+GGG + chr3_4:61460886-61460905 Msa0511800:intron 10.0%
!! AATTAGTTATAAAAAGTTTA+GGG - chr3_4:61461821-61461840 None:intergenic 10.0%
!! TAATTAGTTATAAAAAGTTT+AGG - chr3_4:61461822-61461841 None:intergenic 10.0%
!!! TTTTTTTTTAAGGAAAGTAT+TGG - chr3_4:61460014-61460033 None:intergenic 15.0%
!!! TGGTTTAAGTTTTTTTTTTA+AGG - chr3_4:61460024-61460043 None:intergenic 15.0%
!! ATGTTAAAATCTTACAAAAT+AGG + chr3_4:61460158-61460177 Msa0511800:intron 15.0%
!!! TTTTAACTTGATTTTAATGT+TGG + chr3_4:61460289-61460308 Msa0511800:intron 15.0%
!!! TTTAACTTGATTTTAATGTT+GGG + chr3_4:61460290-61460309 Msa0511800:intron 15.0%
!!! CTTTGATTTTTTTTAGAAAT+TGG - chr3_4:61460513-61460532 None:intergenic 15.0%
!!! ACCAAAAACATTATTTTATA+GGG - chr3_4:61461899-61461918 None:intergenic 15.0%
!!! TACCAAAAACATTATTTTAT+AGG - chr3_4:61461900-61461919 None:intergenic 15.0%
!!! TCATTGTTAATAAGTTATTT+TGG + chr3_4:61462460-61462479 Msa0511800:intron 15.0%
!! AGTATTATAACAATCTAAAT+TGG - chr3_4:61462658-61462677 None:intergenic 15.0%
!!! TAATTGCATACTTTTTTTTT+GGG - chr3_4:61462878-61462897 None:intergenic 15.0%
!!! TTAATTGCATACTTTTTTTT+TGG - chr3_4:61462879-61462898 None:intergenic 15.0%
!! TTTATATTATTAATCTGAAC+TGG + chr3_4:61463162-61463181 Msa0511800:intron 15.0%
!!! TATCCTTTAACTTTTAATAA+AGG + chr3_4:61463210-61463229 Msa0511800:intron 15.0%
!! TTTCCTTTATTAAAAGTTAA+AGG - chr3_4:61463216-61463235 None:intergenic 15.0%
!! GAAAAAAAATTTCATTCATA+AGG - chr3_4:61463381-61463400 None:intergenic 15.0%
!! ATTGTGTATAAAAAAATGTT+TGG + chr3_4:61463839-61463858 Msa0511800:intron 15.0%
!! CATTACAAAATAATCTTAAA+CGG - chr3_4:61463900-61463919 None:intergenic 15.0%
!!! GTTTAAGATTATTTTGTAAT+GGG + chr3_4:61463899-61463918 Msa0511800:intron 15.0%
!!! TTTAAGATTATTTTGTAATG+GGG + chr3_4:61463900-61463919 Msa0511800:intron 15.0%
!! TCTATATGACATAAAAATTA+TGG - chr3_4:61464194-61464213 None:intergenic 15.0%
!!! TATTTGTATTTGATAGTTGA+TGG + chr3_4:61459322-61459341 Msa0511800:intron 20.0%
!! TGCATTAGAGATATTAAATA+AGG - chr3_4:61459373-61459392 None:intergenic 20.0%
!!! TTTTCAACATAAAAAATAGG+TGG - chr3_4:61459645-61459664 None:intergenic 20.0%
!!! TTTTGTTCACGTTTTAAATT+TGG + chr3_4:61460187-61460206 Msa0511800:intron 20.0%
!!! TATAATAATGTTTTGCAGAT+TGG + chr3_4:61460643-61460662 Msa0511800:intron 20.0%
!!! TTATTTAATTTGAGATCAAG+TGG + chr3_4:61460795-61460814 Msa0511800:intron 20.0%
!! ATATATATCATATTAACGTG+TGG + chr3_4:61460914-61460933 Msa0511800:intron 20.0%
!! TATATATCATATTAACGTGT+GGG + chr3_4:61460915-61460934 Msa0511800:intron 20.0%
!!! GACTTTTTGTAGTTTTAATT+TGG - chr3_4:61461440-61461459 None:intergenic 20.0%
!! AGTATTATAACAAGATAGAT+TGG - chr3_4:61461609-61461628 None:intergenic 20.0%
!!! TCCCTATAAAATAATGTTTT+TGG + chr3_4:61461895-61461914 Msa0511800:intron 20.0%
!!! ATGTTTTTGGTACTTTTATT+AGG + chr3_4:61461908-61461927 Msa0511800:intron 20.0%
!!! TGTTTTTGGTACTTTTATTA+GGG + chr3_4:61461909-61461928 Msa0511800:intron 20.0%
!! TAACTTATTAACAATGAGTA+TGG - chr3_4:61462457-61462476 None:intergenic 20.0%
!!! GTACAATGTGTTTTTTTTTT+TGG - chr3_4:61462856-61462875 None:intergenic 20.0%
!! GAAAAAGAAAATATTACAAG+TGG - chr3_4:61463055-61463074 None:intergenic 20.0%
!! AAAAGTTAAAGGATAAACTA+AGG - chr3_4:61463205-61463224 None:intergenic 20.0%
!! CCATGATTAAATTAATCTTA+TGG - chr3_4:61463310-61463329 None:intergenic 20.0%
!! CCATAAGATTAATTTAATCA+TGG + chr3_4:61463307-61463326 Msa0511800:intron 20.0%
!! GATTAATTTAATCATGGATA+TGG + chr3_4:61463313-61463332 Msa0511800:intron 20.0%
!! AAAAAAGTCATCATAATGTA+TGG - chr3_4:61463412-61463431 None:intergenic 20.0%
!! AATGCAAATATATATCTAGT+AGG - chr3_4:61463661-61463680 None:intergenic 20.0%
!!! CGTTTAAGATTATTTTGTAA+TGG + chr3_4:61463898-61463917 Msa0511800:intron 20.0%
!! CCAAATAAAGTATATATTTG+AGG - chr3_4:61463963-61463982 None:intergenic 20.0%
!! CCTCAAATATATACTTTATT+TGG + chr3_4:61463960-61463979 Msa0511800:intron 20.0%
!! AACATTCTTTCATCAATTAA+CGG + chr3_4:61464164-61464183 Msa0511800:intron 20.0%
!! ATTATAGTTAAGGATTGTTA+GGG - chr3_4:61464394-61464413 None:intergenic 20.0%
!! TATTATAGTTAAGGATTGTT+AGG - chr3_4:61464395-61464414 None:intergenic 20.0%
!!! AAATTGGTAATTTCACTAAA+TGG + chr3_4:61464580-61464599 Msa0511800:CDS 20.0%
!!! AATTGGTAATTTCACTAAAT+GGG + chr3_4:61464581-61464600 Msa0511800:CDS 20.0%
!! TAAATATGTCGAAATCAAAT+GGG - chr3_4:61464710-61464729 None:intergenic 20.0%
!! TTAAATATGTCGAAATCAAA+TGG - chr3_4:61464711-61464730 None:intergenic 20.0%
!!! TTTAAGTTATCATCACATTA+TGG + chr3_4:61465245-61465264 Msa0511800:three_prime_UTR 20.0%
!!! ATTGTTTCTCTTTTATTATC+AGG + chr3_4:61465306-61465325 Msa0511800:three_prime_UTR 20.0%
!!! ATAATTTTGAATAACTCATC+TGG - chr3_4:61465444-61465463 None:intergenic 20.0%
! CATTTACACAAACAATCTAA+AGG + chr3_4:61458838-61458857 Msa0511800:five_prime_UTR 25.0%
!!! TGTTAAAAGCTGTTTTTGTT+TGG + chr3_4:61458907-61458926 Msa0511800:CDS 25.0%
! AAAGTTGTCTTATGATTAAG+TGG + chr3_4:61459688-61459707 Msa0511800:intron 25.0%
! AAGTTGTCTTATGATTAAGT+GGG + chr3_4:61459689-61459708 Msa0511800:intron 25.0%
!! TTACGGTTTTTCTATTAGAT+TGG - chr3_4:61459812-61459831 None:intergenic 25.0%
! ATTAGTGTTTACTTATGTTG+TGG - chr3_4:61459974-61459993 None:intergenic 25.0%
!!! TTTAAGGAAAGTATTGGTTT+AGG - chr3_4:61460008-61460027 None:intergenic 25.0%
! CATTGAATTTCTACAAGTAT+TGG - chr3_4:61460044-61460063 None:intergenic 25.0%
! CAATACTTGTAGAAATTCAA+TGG + chr3_4:61460042-61460061 Msa0511800:intron 25.0%
! TTAAATTTGGTCTATGTAGT+TGG + chr3_4:61460200-61460219 Msa0511800:intron 25.0%
! TAAATTTGGTCTATGTAGTT+GGG + chr3_4:61460201-61460220 Msa0511800:intron 25.0%
!!! TAGTTGGGAATTTTTTTTGT+TGG + chr3_4:61460216-61460235 Msa0511800:intron 25.0%
! AGATAAAAAAACATGTGGTT+TGG - chr3_4:61460424-61460443 None:intergenic 25.0%
!!! TGTTTTTTTATCTTGCAGTT+CGG + chr3_4:61460431-61460450 Msa0511800:intron 25.0%
! TTAGAAATTGGTCATAGATA+GGG - chr3_4:61460501-61460520 None:intergenic 25.0%
! TTTAGAAATTGGTCATAGAT+AGG - chr3_4:61460502-61460521 None:intergenic 25.0%
! CAAAAAATGTATAAGGACTA+AGG - chr3_4:61460585-61460604 None:intergenic 25.0%
!!! AGTTTTAATTTGGATCGATT+TGG - chr3_4:61461430-61461449 None:intergenic 25.0%
! AAATTACAAAACGTTTAGAG+AGG - chr3_4:61461857-61461876 None:intergenic 25.0%
!!! ATGTTTTAGATGGTATCAAT+TGG + chr3_4:61462060-61462079 Msa0511800:intron 25.0%
!!! ATAAGTTATTTTGGTCCATA+TGG + chr3_4:61462469-61462488 Msa0511800:intron 25.0%
!! GATTTAAAGCAAAGCATTAT+TGG - chr3_4:61462636-61462655 None:intergenic 25.0%
! CAATTAACATTGTACCAAAA+AGG + chr3_4:61462716-61462735 Msa0511800:intron 25.0%
!!! CAGTTGGTAGTATTATTATA+TGG + chr3_4:61462755-61462774 Msa0511800:intron 25.0%
!! TTGGTAGTATTATTATATGG+AGG + chr3_4:61462758-61462777 Msa0511800:intron 25.0%
! TGGTAGTATTATTATATGGA+GGG + chr3_4:61462759-61462778 Msa0511800:intron 25.0%
!!! ATGTGTTTTTTTTTTTGGTC+AGG - chr3_4:61462851-61462870 None:intergenic 25.0%
!! AATGAGATAGTGAATTTTAG+AGG - chr3_4:61462969-61462988 None:intergenic 25.0%
!!! ACTCACTTTAAGATTCAATT+TGG - chr3_4:61463005-61463024 None:intergenic 25.0%
! AAAGAAAATATTACAAGTGG+AGG - chr3_4:61463052-61463071 None:intergenic 25.0%
!! GAAAAAAGACAATGTTGTTT+AGG - chr3_4:61463341-61463360 None:intergenic 25.0%
! AGATCAAAAACTTACTGAAA+TGG - chr3_4:61463624-61463643 None:intergenic 25.0%
!!! CATTTTTTTATACACAATCG+AGG - chr3_4:61463837-61463856 None:intergenic 25.0%
!! TATATTTGAGGTTGTATTCA+TGG - chr3_4:61463951-61463970 None:intergenic 25.0%
! TTCATCGATAAAATCAGTTT+AGG - chr3_4:61464107-61464126 None:intergenic 25.0%
! AAAACAAATCATTTCCAGAA+TGG + chr3_4:61464497-61464516 Msa0511800:CDS 25.0%
! AAACAAATCATTTCCAGAAT+GGG + chr3_4:61464498-61464517 Msa0511800:CDS 25.0%
!! ATTTACATGGACATGATTTT+TGG + chr3_4:61464859-61464878 Msa0511800:CDS 25.0%
!! TTTACATGGACATGATTTTT+GGG + chr3_4:61464860-61464879 Msa0511800:CDS 25.0%
! AAAGAAAGAAAAACACTCTT+AGG - chr3_4:61465213-61465232 None:intergenic 25.0%
! GCCTTCATGAATAATATATA+GGG + chr3_4:61465344-61465363 Msa0511800:three_prime_UTR 25.0%
! CCTTCATGAATAATATATAG+GGG + chr3_4:61465345-61465364 Msa0511800:three_prime_UTR 25.0%
!!! CTGTTTTTGTTTGGTGTATA+TGG + chr3_4:61458916-61458935 Msa0511800:CDS 30.0%
!! TTTGTTTGGTGTATATGGTT+AGG + chr3_4:61458921-61458940 Msa0511800:CDS 30.0%
!! TTGTTTGGTGTATATGGTTA+GGG + chr3_4:61458922-61458941 Msa0511800:CDS 30.0%
AGTATTGCTCATAACAGTAA+CGG + chr3_4:61459252-61459271 Msa0511800:intron 30.0%
ACTCCTACATAAAAACTAGT+GGG + chr3_4:61459441-61459460 Msa0511800:intron 30.0%
! GAGATGGATCAATTTTTGTT+TGG + chr3_4:61459522-61459541 Msa0511800:intron 30.0%
! TTTTTATCACTTTGTGTGCA+TGG - chr3_4:61459566-61459585 None:intergenic 30.0%
AGATTCTGTCAAAAAAAGAG+TGG + chr3_4:61459715-61459734 Msa0511800:intron 30.0%
GATTCTGTCAAAAAAAGAGT+GGG + chr3_4:61459716-61459735 Msa0511800:intron 30.0%
! TTTTATCCAATCCTATGACT+AGG + chr3_4:61459771-61459790 Msa0511800:intron 30.0%
TTTATCCAATCCTATGACTA+GGG + chr3_4:61459772-61459791 Msa0511800:intron 30.0%
AAAAAGTGATCCGAATACAT+CGG - chr3_4:61459879-61459898 None:intergenic 30.0%
TGTTTACTTATGTTGTGGTT+TGG - chr3_4:61459969-61459988 None:intergenic 30.0%
!! AAAAAACATGTGGTTTGGTT+CGG - chr3_4:61460419-61460438 None:intergenic 30.0%
CTGCAAGATAAAAAAACATG+TGG - chr3_4:61460429-61460448 None:intergenic 30.0%
TAGAAATTGGTCATAGATAG+GGG - chr3_4:61460500-61460519 None:intergenic 30.0%
ATTACAGATTCATTGTTGAC+AGG + chr3_4:61460731-61460750 Msa0511800:CDS 30.0%
TTACAGATTCATTGTTGACA+GGG + chr3_4:61460732-61460751 Msa0511800:CDS 30.0%
AACAAAAGAAAAACCATTGC+TGG - chr3_4:61460836-61460855 None:intergenic 30.0%
! TATTTCTATCATGGACACTA+TGG + chr3_4:61460967-61460986 Msa0511800:CDS 30.0%
AACTCACCATCATAATGAAA+TGG - chr3_4:61461057-61461076 None:intergenic 30.0%
! AAAAGTTGAAAGTATACCTG+TGG - chr3_4:61461168-61461187 None:intergenic 30.0%
AAAACTCCCAAACAAAGATT+GGG - chr3_4:61461501-61461520 None:intergenic 30.0%
AGAGTAGAGCTTGTAAAAAA+AGG + chr3_4:61461522-61461541 Msa0511800:intron 30.0%
GAAGCAAGAATCATAAAGAA+TGG + chr3_4:61461544-61461563 Msa0511800:intron 30.0%
ATGATCAATAAAAACCCGTA+AGG - chr3_4:61461781-61461800 None:intergenic 30.0%
ACATATCACTAAGGAAACTA+GGG - chr3_4:61462044-61462063 None:intergenic 30.0%
AACATATCACTAAGGAAACT+AGG - chr3_4:61462045-61462064 None:intergenic 30.0%
! CCATCTAAAACATATCACTA+AGG - chr3_4:61462053-61462072 None:intergenic 30.0%
!! CCTTAGTGATATGTTTTAGA+TGG + chr3_4:61462050-61462069 Msa0511800:intron 30.0%
GTAGAAGGAAAATCAGTTAT+GGG - chr3_4:61462111-61462130 None:intergenic 30.0%
TGTAGAAGGAAAATCAGTTA+TGG - chr3_4:61462112-61462131 None:intergenic 30.0%
GAGTAATATGGATATGTAGA+AGG - chr3_4:61462126-61462145 None:intergenic 30.0%
GTGCTAAGGTTGAATAATAT+GGG - chr3_4:61462249-61462268 None:intergenic 30.0%
! AAGGTAATTATGAAGGGTAT+GGG - chr3_4:61462297-61462316 None:intergenic 30.0%
! GTTTCCATAAATGTATTGGT+TGG - chr3_4:61462323-61462342 None:intergenic 30.0%
TTGGGTTTCCATAAATGTAT+TGG - chr3_4:61462327-61462346 None:intergenic 30.0%
ATTAACAATGAGTATGGAGT+GGG - chr3_4:61462451-61462470 None:intergenic 30.0%
TATTAACAATGAGTATGGAG+TGG - chr3_4:61462452-61462471 None:intergenic 30.0%
! GATTGTTGTTGAAAACCATA+TGG - chr3_4:61462487-61462506 None:intergenic 30.0%
! TTTTCAACAACAATCTCATC+TGG + chr3_4:61462492-61462511 Msa0511800:intron 30.0%
ATCTCATCTGGATTATTCAA+AGG + chr3_4:61462504-61462523 Msa0511800:intron 30.0%
TAAAGTGGATATAGGTATGA+GGG - chr3_4:61462560-61462579 None:intergenic 30.0%
ATAAAGTGGATATAGGTATG+AGG - chr3_4:61462561-61462580 None:intergenic 30.0%
GGTAGTATTATTATATGGAG+GGG + chr3_4:61462760-61462779 Msa0511800:intron 30.0%
ACCTTAAAAGGTGAATAAGT+GGG - chr3_4:61462808-61462827 None:intergenic 30.0%
ATTCAATTTGGAAGCTTAGA+GGG - chr3_4:61462993-61463012 None:intergenic 30.0%
ATCATAATGTATGGTGTGTT+AGG - chr3_4:61463403-61463422 None:intergenic 30.0%
!!! CTAATTCTGTAGGTCTTTTT+TGG - chr3_4:61463563-61463582 None:intergenic 30.0%
CAAAAAAGACCTACAGAATT+AGG + chr3_4:61463561-61463580 Msa0511800:CDS 30.0%
!! AAGATTATTTTGTAATGGGG+AGG + chr3_4:61463903-61463922 Msa0511800:intron 30.0%
CAGGGTTTGTATTATAGTTA+AGG - chr3_4:61464404-61464423 None:intergenic 30.0%
TATTTGATTGCTCCTAAGTA+AGG - chr3_4:61464642-61464661 None:intergenic 30.0%
AAATCAAATGGGAATCTATC+TGG - chr3_4:61464699-61464718 None:intergenic 30.0%
TTACACGTTTCACTTAAATG+AGG + chr3_4:61464770-61464789 Msa0511800:CDS 30.0%
AAAACACTCTTAGGAGATTA+AGG - chr3_4:61465204-61465223 None:intergenic 30.0%
CGCCTTCATGAATAATATAT+AGG + chr3_4:61465343-61465362 Msa0511800:three_prime_UTR 30.0%
CCCCTATATATTATTCATGA+AGG - chr3_4:61465348-61465367 None:intergenic 30.0%
GAAACACTACAAGTTTGATG+TGG + chr3_4:61458971-61458990 Msa0511800:CDS 35.0%
! CAACTTCAGCTCTAATAGTT+GGG - chr3_4:61459064-61459083 None:intergenic 35.0%
CACTCCTACATAAAAACTAG+TGG + chr3_4:61459440-61459459 Msa0511800:intron 35.0%
!!! TCACCCACTAGTTTTTATGT+AGG - chr3_4:61459447-61459466 None:intergenic 35.0%
GCACACAAAGTGATAAAAAG+AGG + chr3_4:61459567-61459586 Msa0511800:intron 35.0%
AAAAAAGAGTGGGTAGAGAT+CGG + chr3_4:61459726-61459745 Msa0511800:intron 35.0%
! ATTTTGAACACCCTAGTCAT+AGG - chr3_4:61459785-61459804 None:intergenic 35.0%
!!! ATTTTTTGCGGTTTCGGTTT+GGG - chr3_4:61459845-61459864 None:intergenic 35.0%
!!! AATGCGATTTTTTGCGGTTT+CGG - chr3_4:61459851-61459870 None:intergenic 35.0%
AAACCGCAAAAAATCGCATT+TGG + chr3_4:61459851-61459870 Msa0511800:intron 35.0%
!!! GAACCAAATGCGATTTTTTG+CGG - chr3_4:61459857-61459876 None:intergenic 35.0%
!! ACTTATGTTGTGGTTTGGTT+TGG - chr3_4:61459964-61459983 None:intergenic 35.0%
!! TAATGCGGTTTGGTTTAGAT+CGG - chr3_4:61460351-61460370 None:intergenic 35.0%
TAAACCAAACCGCATTAGTT+TGG + chr3_4:61460354-61460373 Msa0511800:intron 35.0%
CTGTAATGAAAAGTTTCTCC+TGG - chr3_4:61460718-61460737 None:intergenic 35.0%
CCATGATAGAAATATGTACC+AGG - chr3_4:61460961-61460980 None:intergenic 35.0%
! CCTGGTACATATTTCTATCA+TGG + chr3_4:61460958-61460977 Msa0511800:CDS 35.0%
!! CAAAGATTGGGTTTGCTATA+AGG - chr3_4:61461489-61461508 None:intergenic 35.0%
TAGCAAACCCAATCTTTGTT+TGG + chr3_4:61461491-61461510 Msa0511800:intron 35.0%
! AGCAAACCCAATCTTTGTTT+GGG + chr3_4:61461492-61461511 Msa0511800:intron 35.0%
CAAAACTCCCAAACAAAGAT+TGG - chr3_4:61461502-61461521 None:intergenic 35.0%
! TAAAGAATGGAGAGCTTTAG+AGG + chr3_4:61461557-61461576 Msa0511800:intron 35.0%
!! AAAGAATGGAGAGCTTTAGA+GGG + chr3_4:61461558-61461577 Msa0511800:intron 35.0%
GTGTTCAAGATTATGTCACA+TGG + chr3_4:61461931-61461950 Msa0511800:intron 35.0%
TCTAAGAGCTAAAGGAGAAA+AGG - chr3_4:61462020-61462039 None:intergenic 35.0%
AAGGAAAATCAGTTATGGGA+GGG - chr3_4:61462107-61462126 None:intergenic 35.0%
GGTGCTAAGGTTGAATAATA+TGG - chr3_4:61462250-61462269 None:intergenic 35.0%
GAAGGTAATTATGAAGGGTA+TGG - chr3_4:61462298-61462317 None:intergenic 35.0%
TGGAGGAAGGTAATTATGAA+GGG - chr3_4:61462303-61462322 None:intergenic 35.0%
TTGGAGGAAGGTAATTATGA+AGG - chr3_4:61462304-61462323 None:intergenic 35.0%
!! TAAATGTATTGGTTGGAGGA+AGG - chr3_4:61462316-61462335 None:intergenic 35.0%
TCCTCCAACCAATACATTTA+TGG + chr3_4:61462316-61462335 Msa0511800:intron 35.0%
!! TCCATAAATGTATTGGTTGG+AGG - chr3_4:61462320-61462339 None:intergenic 35.0%
! GAATAGGAAGGGTATAGTAT+AGG - chr3_4:61462378-61462397 None:intergenic 35.0%
TGGAAGAAGTTGAATAGGAA+GGG - chr3_4:61462389-61462408 None:intergenic 35.0%
TTGGAAGAAGTTGAATAGGA+AGG - chr3_4:61462390-61462409 None:intergenic 35.0%
!! TATTCAAAGGCACTCTCATA+TGG + chr3_4:61462517-61462536 Msa0511800:intron 35.0%
!! ATTCAAAGGCACTCTCATAT+GGG + chr3_4:61462518-61462537 Msa0511800:intron 35.0%
AAAGTGGATATAGGTATGAG+GGG - chr3_4:61462559-61462578 None:intergenic 35.0%
TTAGAAAGCGAAGCATAAAG+TGG - chr3_4:61462575-61462594 None:intergenic 35.0%
!! TCGCTTTCTAAAAGTGTTTC+TGG + chr3_4:61462584-61462603 Msa0511800:intron 35.0%
!! TAAAAGTGTTTCTGGCTTTG+AGG + chr3_4:61462592-61462611 Msa0511800:intron 35.0%
GTATTATTATATGGAGGGGT+CGG + chr3_4:61462764-61462783 Msa0511800:intron 35.0%
TATTATTATATGGAGGGGTC+GGG + chr3_4:61462765-61462784 Msa0511800:intron 35.0%
CCTTAAAAGGTGAATAAGTG+GGG - chr3_4:61462807-61462826 None:intergenic 35.0%
CACCTTAAAAGGTGAATAAG+TGG - chr3_4:61462809-61462828 None:intergenic 35.0%
TGGCTAGAATTCACCTTAAA+AGG - chr3_4:61462820-61462839 None:intergenic 35.0%
GATTCAATTTGGAAGCTTAG+AGG - chr3_4:61462994-61463013 None:intergenic 35.0%
GAAAATATTACAAGTGGAGG+TGG - chr3_4:61463049-61463068 None:intergenic 35.0%
!!! TTTTAGAGCTTGCTCATCAA+TGG + chr3_4:61463428-61463447 Msa0511800:intron 35.0%
! TTTGAAATTGCATTGAGGCA+GGG - chr3_4:61463501-61463520 None:intergenic 35.0%
ACTAGCAATCCTAATTCTGT+AGG - chr3_4:61463573-61463592 None:intergenic 35.0%
ATCTCTCTTTCTTGTGTAGT+AGG + chr3_4:61463689-61463708 Msa0511800:intron 35.0%
TCTTGTGTAGTAGGTATGAA+AGG + chr3_4:61463698-61463717 Msa0511800:intron 35.0%
GCAAGGAAAACATGACTAAT+AGG + chr3_4:61463767-61463786 Msa0511800:intron 35.0%
! ATAGAATCACACACTTGTTG+TGG + chr3_4:61464209-61464228 Msa0511800:intron 35.0%
CTATGCTATCAACTGTGAAT+GGG - chr3_4:61464260-61464279 None:intergenic 35.0%
TCTATGCTATCAACTGTGAA+TGG - chr3_4:61464261-61464280 None:intergenic 35.0%
TGGTAATATAGGGAAAGTTG+AGG - chr3_4:61464427-61464446 None:intergenic 35.0%
!! TGATTGGTGGTGGTAATATA+GGG - chr3_4:61464437-61464456 None:intergenic 35.0%
! CAATTTTGCTTTGTGTGTTG+AGG - chr3_4:61464566-61464585 None:intergenic 35.0%
CTCAACACACAAAGCAAAAT+TGG + chr3_4:61464564-61464583 Msa0511800:CDS 35.0%
GTTGTTGTACTTGGATTAAC+TGG - chr3_4:61464738-61464757 None:intergenic 35.0%
GTTAATCCAAGTACAACAAC+CGG + chr3_4:61464738-61464757 Msa0511800:CDS 35.0%
ATACTAGTGAAGTTCATCCA+TGG + chr3_4:61464835-61464854 Msa0511800:CDS 35.0%
!!! TGGACATGATTTTTGGGTTT+TGG + chr3_4:61464866-61464885 Msa0511800:CDS 35.0%
!!! GGACATGATTTTTGGGTTTT+GGG + chr3_4:61464867-61464886 Msa0511800:CDS 35.0%
!!! GATTTTTGGGTTTTGGGATA+TGG + chr3_4:61464873-61464892 Msa0511800:CDS 35.0%
! AAACTTTTCTGATGAACACC+TGG - chr3_4:61464915-61464934 None:intergenic 35.0%
ACTGCAGTTATATTTCCGTA+TGG + chr3_4:61464963-61464982 Msa0511800:CDS 35.0%
CAGTTATATTTCCGTATGGT+TGG + chr3_4:61464967-61464986 Msa0511800:CDS 35.0%
ATTATCTGCCTTAAACCTCA+AGG - chr3_4:61464997-61465016 None:intergenic 35.0%
TATTGAACCACATTTGCATC+TGG + chr3_4:61465043-61465062 Msa0511800:CDS 35.0%
ATTGAACCACATTTGCATCT+GGG + chr3_4:61465044-61465063 Msa0511800:CDS 35.0%
ACTCTTAGGAGATTAAGGTT+TGG - chr3_4:61465199-61465218 None:intergenic 35.0%
TATCATCACATTATGGCCTA+TGG + chr3_4:61465252-61465271 Msa0511800:three_prime_UTR 35.0%
ATCATCACATTATGGCCTAT+GGG + chr3_4:61465253-61465272 Msa0511800:three_prime_UTR 35.0%
TATTATTCATGAAGGCGAGT+TGG - chr3_4:61465340-61465359 None:intergenic 35.0%
ACAACATGCTCTATGCAATC+TGG - chr3_4:61459014-61459033 None:intergenic 40.0%
TTGCATAGAGCATGTTGTGA+TGG + chr3_4:61459016-61459035 Msa0511800:CDS 40.0%
TGCATAGAGCATGTTGTGAT+GGG + chr3_4:61459017-61459036 Msa0511800:CDS 40.0%
! CATGTTGTGATGGGAATCAA+TGG + chr3_4:61459026-61459045 Msa0511800:CDS 40.0%
! CCAACTTCAGCTCTAATAGT+TGG - chr3_4:61459065-61459084 None:intergenic 40.0%
CCAACTATTAGAGCTGAAGT+TGG + chr3_4:61459062-61459081 Msa0511800:CDS 40.0%
! TTGCTCATAACAGTAACGGA+CGG + chr3_4:61459256-61459275 Msa0511800:intron 40.0%
!! GTTTGGGTTGGTTCAGTTTA+CGG - chr3_4:61459829-61459848 None:intergenic 40.0%
!!! GATTTTTTGCGGTTTCGGTT+TGG - chr3_4:61459846-61459865 None:intergenic 40.0%
! GCATTTGGTTCCGATGTATT+CGG + chr3_4:61459866-61459885 Msa0511800:intron 40.0%
!!! CACTTTTTTACTCAACCGCA+TGG + chr3_4:61459891-61459910 Msa0511800:intron 40.0%
! TTTTACTCAACCGCATGGTT+TGG + chr3_4:61459896-61459915 Msa0511800:intron 40.0%
!! GTTTGGTTTGGTTTGGTTTG+CGG + chr3_4:61459913-61459932 Msa0511800:intron 40.0%
!! TGGTTTGGTTTGGTTTGGTT+CGG - chr3_4:61459911-61459930 None:intergenic 40.0%
!! TGTTGTGGTTTGGTTTGGTT+TGG - chr3_4:61459959-61459978 None:intergenic 40.0%
CAAACCAAGCCAAACTAATG+CGG - chr3_4:61460366-61460385 None:intergenic 40.0%
!! TAGTTTGGCTTGGTTTGGTT+TGG + chr3_4:61460369-61460388 Msa0511800:intron 40.0%
! TTTTGCAGATTGGAACTCCT+TGG + chr3_4:61460653-61460672 Msa0511800:intron 40.0%
TTTGCAGATTGGAACTCCTT+GGG + chr3_4:61460654-61460673 Msa0511800:intron 40.0%
TCTCAGTGTGCTATAAATCC+AGG + chr3_4:61460697-61460716 Msa0511800:CDS 40.0%
CGTGTGGGTGTTTAATCATA+TGG + chr3_4:61460930-61460949 Msa0511800:intron 40.0%
TTTAATCATATGGTGCAGCC+TGG + chr3_4:61460940-61460959 Msa0511800:intron 40.0%
CATAATGAAATGGCTCGCTT+TGG - chr3_4:61461047-61461066 None:intergenic 40.0%
AGCGAGCCATTTCATTATGA+TGG + chr3_4:61461048-61461067 Msa0511800:CDS 40.0%
CACAAGTTCACAAGAACAAG+AGG + chr3_4:61461104-61461123 Msa0511800:CDS 40.0%
AGTTCACAAGAACAAGAGGT+TGG + chr3_4:61461108-61461127 Msa0511800:CDS 40.0%
! TAAGGCTCTCTTTGAGAGTT+GGG - chr3_4:61461763-61461782 None:intergenic 40.0%
AACTCTCAAAGAGAGCCTTA+CGG + chr3_4:61461763-61461782 Msa0511800:intron 40.0%
TCACATGGTCTCAATAGACT+GGG + chr3_4:61461946-61461965 Msa0511800:intron 40.0%
!! ACTAGGGTTCTAAGAGCTAA+AGG - chr3_4:61462028-61462047 None:intergenic 40.0%
GAAGGAAAATCAGTTATGGG+AGG - chr3_4:61462108-61462127 None:intergenic 40.0%
ATTGTGAGGCTCGAGTAATA+TGG - chr3_4:61462138-61462157 None:intergenic 40.0%
GAATGGAGCTATAATACTGG+TGG - chr3_4:61462165-61462184 None:intergenic 40.0%
ATATGGTGTGTGTGTGGATT+GGG - chr3_4:61462188-61462207 None:intergenic 40.0%
AATATGGTGTGTGTGTGGAT+TGG - chr3_4:61462189-61462208 None:intergenic 40.0%
GGAGGAGATTAAGTGGAATA+TGG - chr3_4:61462205-61462224 None:intergenic 40.0%
TGAATAATATGGGTGAGAGG+TGG - chr3_4:61462239-61462258 None:intergenic 40.0%
GGTTGAATAATATGGGTGAG+AGG - chr3_4:61462242-61462261 None:intergenic 40.0%
GTAGAGCTGAAATGGTGTTT+GGG - chr3_4:61462345-61462364 None:intergenic 40.0%
! GTATAGTATAGGTTGGGTGA+TGG - chr3_4:61462367-61462386 None:intergenic 40.0%
! GGAAGGGTATAGTATAGGTT+GGG - chr3_4:61462373-61462392 None:intergenic 40.0%
! AGGAAGGGTATAGTATAGGT+TGG - chr3_4:61462374-61462393 None:intergenic 40.0%
! TGGGTTGGAAGAAGTTGAAT+AGG - chr3_4:61462394-61462413 None:intergenic 40.0%
TCTTCCAACCCATACAATCA+TGG + chr3_4:61462402-61462421 Msa0511800:intron 40.0%
GACTGTAGCCATGATTGTAT+GGG - chr3_4:61462413-61462432 None:intergenic 40.0%
AGACTGTAGCCATGATTGTA+TGG - chr3_4:61462414-61462433 None:intergenic 40.0%
GCGAAGCATAAAGTGGATAT+AGG - chr3_4:61462568-61462587 None:intergenic 40.0%
ATTATTATATGGAGGGGTCG+GGG + chr3_4:61462766-61462785 Msa0511800:intron 40.0%
! CCCCACTTATTCACCTTTTA+AGG + chr3_4:61462804-61462823 Msa0511800:intron 40.0%
TAAGGTGAATTCTAGCCACT+AGG + chr3_4:61462822-61462841 Msa0511800:intron 40.0%
GTTCACGAAATTAGCTGCTA+GGG - chr3_4:61463474-61463493 None:intergenic 40.0%
TGTTCACGAAATTAGCTGCT+AGG - chr3_4:61463475-61463494 None:intergenic 40.0%
!! CTTTGAAATTGCATTGAGGC+AGG - chr3_4:61463502-61463521 None:intergenic 40.0%
CTGCCTCAATGCAATTTCAA+AGG + chr3_4:61463500-61463519 Msa0511800:CDS 40.0%
!! CCACCTTTGAAATTGCATTG+AGG - chr3_4:61463506-61463525 None:intergenic 40.0%
CCTCAATGCAATTTCAAAGG+TGG + chr3_4:61463503-61463522 Msa0511800:CDS 40.0%
ATTATTCCATTCGCATCGCA+AGG + chr3_4:61463750-61463769 Msa0511800:intron 40.0%
!! TCTTAAACGGCTAGTTTAGC+TGG - chr3_4:61463887-61463906 None:intergenic 40.0%
!! TATTTTGTAATGGGGAGGCT+TGG + chr3_4:61463908-61463927 Msa0511800:intron 40.0%
GATAGCATAGACATCTACTC+AGG + chr3_4:61464270-61464289 Msa0511800:CDS 40.0%
!!! AGTAGTTTTGGTTAGGGTCT+TGG - chr3_4:61464326-61464345 None:intergenic 40.0%
AAGACCCTAACCAAAACTAC+TGG + chr3_4:61464325-61464344 Msa0511800:CDS 40.0%
!!! AGAGCCAGTAGTTTTGGTTA+GGG - chr3_4:61464332-61464351 None:intergenic 40.0%
!! CAAAACTACTGGCTCTCAAT+CGG + chr3_4:61464336-61464355 Msa0511800:CDS 40.0%
TTAAGGATTGTTAGGGCTTG+TGG - chr3_4:61464387-61464406 None:intergenic 40.0%
ATATAGGGAAAGTTGAGGCA+GGG - chr3_4:61464422-61464441 None:intergenic 40.0%
AATATAGGGAAAGTTGAGGC+AGG - chr3_4:61464423-61464442 None:intergenic 40.0%
!! GTGATTGGTGGTGGTAATAT+AGG - chr3_4:61464438-61464457 None:intergenic 40.0%
TGTTGAGGAGGTAAATTGTG+CGG - chr3_4:61464551-61464570 None:intergenic 40.0%
! TTTTGCTTTGTGTGTTGAGG+AGG - chr3_4:61464563-61464582 None:intergenic 40.0%
TTGCCAACAACACCTTACTT+AGG + chr3_4:61464627-61464646 Msa0511800:CDS 40.0%
TCAAATGGGAATCTATCTGG+TGG - chr3_4:61464696-61464715 None:intergenic 40.0%
GTTCATCCATGGCATTTACA+TGG + chr3_4:61464846-61464865 Msa0511800:CDS 40.0%
TCATGTCCATGTAAATGCCA+TGG - chr3_4:61464855-61464874 None:intergenic 40.0%
ATAACTGCAGTGTTCCTCAA+AGG - chr3_4:61464954-61464973 None:intergenic 40.0%
! AGGTTTAAGGCAGATAATCC+TGG + chr3_4:61464999-61465018 Msa0511800:CDS 40.0%
!!! AATGGGTGTTATTTTTGCCG+AGG + chr3_4:61465067-61465086 Msa0511800:CDS 40.0%
!!! ATGGGTGTTATTTTTGCCGA+GGG + chr3_4:61465068-61465087 Msa0511800:CDS 40.0%
! CCCAATTTTATGAACACCCT+CGG - chr3_4:61465087-61465106 None:intergenic 40.0%
!! CCGAGGGTGTTCATAAAATT+GGG + chr3_4:61465084-61465103 Msa0511800:CDS 40.0%
!! GGTGTTGTTTAGGAACATCT+TGG - chr3_4:61465147-61465166 None:intergenic 40.0%
AACAAAGCAAAACCACCCAT+AGG - chr3_4:61465271-61465290 None:intergenic 40.0%
!! CTAGCTTTTGCTCAGAGACT+TGG - chr3_4:61458865-61458884 None:intergenic 45.0%
GGAATCAATGGTCAGTTTCC+TGG + chr3_4:61459038-61459057 Msa0511800:CDS 45.0%
! GTTGGTGAGGTCAATGACAA+CGG - chr3_4:61459093-61459112 None:intergenic 45.0%
ACCAACAAGCTCTCTACAGA+GGG + chr3_4:61459107-61459126 Msa0511800:CDS 45.0%
CAGAGGGAACTGTTATTCAC+TGG + chr3_4:61459123-61459142 Msa0511800:CDS 45.0%
GGAACTGTTATTCACTGGCA+TGG + chr3_4:61459128-61459147 Msa0511800:CDS 45.0%
! TAGTGGGTGAGAGAGAGTAA+AGG + chr3_4:61459457-61459476 Msa0511800:intron 45.0%
AGTGGGTGAGAGAGAGTAAA+GGG + chr3_4:61459458-61459477 Msa0511800:intron 45.0%
GAGAGAGAGTAAAGGGAGAA+AGG + chr3_4:61459465-61459484 Msa0511800:intron 45.0%
GAACACCCTAGTCATAGGAT+TGG - chr3_4:61459780-61459799 None:intergenic 45.0%
CCAAACCAAACCAAACCATG+CGG - chr3_4:61459909-61459928 None:intergenic 45.0%
! TTGGTTTAGATCGGTTGGTG+CGG - chr3_4:61460342-61460361 None:intergenic 45.0%
CAAGCCAAACTAATGCGGTT+TGG - chr3_4:61460361-61460380 None:intergenic 45.0%
! CAAACCGCATTAGTTTGGCT+TGG + chr3_4:61460359-61460378 Msa0511800:intron 45.0%
!! CGCATTAGTTTGGCTTGGTT+TGG + chr3_4:61460364-61460383 Msa0511800:intron 45.0%
!! TGGCTTGGTTTGGTTTGGTT+TGG + chr3_4:61460374-61460393 Msa0511800:intron 45.0%
!! AACATGTGGTTTGGTTCGGT+TGG - chr3_4:61460415-61460434 None:intergenic 45.0%
TCAAGTGGCATATATCTCCC+AGG + chr3_4:61460810-61460829 Msa0511800:intron 45.0%
! AGAAAAACCATTGCTGGCCT+GGG - chr3_4:61460830-61460849 None:intergenic 45.0%
AAGAAAAACCATTGCTGGCC+TGG - chr3_4:61460831-61460850 None:intergenic 45.0%
AATGGCTCGCTTTGGTTGTT+TGG - chr3_4:61461039-61461058 None:intergenic 45.0%
ATCTGCTCCTTAGTGATCTG+TGG + chr3_4:61461079-61461098 Msa0511800:CDS 45.0%
TTGTGTGCCACAGATCACTA+AGG - chr3_4:61461089-61461108 None:intergenic 45.0%
TTCACCAACCCATCTCATTG+GGG - chr3_4:61461145-61461164 None:intergenic 45.0%
GTTCACCAACCCATCTCATT+GGG - chr3_4:61461146-61461165 None:intergenic 45.0%
!! AATGGAGAGCTTTAGAGGGT+TGG + chr3_4:61461562-61461581 Msa0511800:intron 45.0%
!! ATGGAGAGCTTTAGAGGGTT+GGG + chr3_4:61461563-61461582 Msa0511800:intron 45.0%
! GTAAGGCTCTCTTTGAGAGT+TGG - chr3_4:61461764-61461783 None:intergenic 45.0%
ACTCTCAAAGAGAGCCTTAC+GGG + chr3_4:61461764-61461783 Msa0511800:intron 45.0%
GTCACATGGTCTCAATAGAC+TGG + chr3_4:61461945-61461964 Msa0511800:intron 45.0%
!! TATGGGAGGGTTTTGTGATC+AGG - chr3_4:61462094-61462113 None:intergenic 45.0%
ATACTGGTGGTTGCATTGTG+AGG - chr3_4:61462152-61462171 None:intergenic 45.0%
GGGGAATGGAGCTATAATAC+TGG - chr3_4:61462168-61462187 None:intergenic 45.0%
! TATGGTGTGTGTGTGGATTG+GGG - chr3_4:61462187-61462206 None:intergenic 45.0%
AGTGGAATATGGTGTGTGTG+TGG - chr3_4:61462194-61462213 None:intergenic 45.0%
TGCACATGGAGGAGATTAAG+TGG - chr3_4:61462212-61462231 None:intergenic 45.0%
! GAAGGGTATGGGTTTGATGA+TGG - chr3_4:61462286-61462305 None:intergenic 45.0%
GGTAGAGCTGAAATGGTGTT+TGG - chr3_4:61462346-61462365 None:intergenic 45.0%
GTAGCCATGATTGTATGGGT+TGG - chr3_4:61462409-61462428 None:intergenic 45.0%
!! TGGCTTTGAGGCTATTGCTT+AGG + chr3_4:61462604-61462623 Msa0511800:intron 45.0%
TACCAACTGAGCTATGCTCA+CGG - chr3_4:61462744-61462763 None:intergenic 45.0%
!! TTTTTGGTCAGGTAGCCTAG+TGG - chr3_4:61462840-61462859 None:intergenic 45.0%
ATTACAAGTGGAGGTGGTTG+TGG - chr3_4:61463043-61463062 None:intergenic 45.0%
!! TTAATCTGAACTGGTGCTGC+TGG + chr3_4:61463171-61463190 Msa0511800:intron 45.0%
! AGCTTGCTCATCAATGGAAG+AGG + chr3_4:61463434-61463453 Msa0511800:CDS 45.0%
GCTTGCTCATCAATGGAAGA+GGG + chr3_4:61463435-61463454 Msa0511800:CDS 45.0%
GTCCTTAGCTTCTCTCAACT+TGG + chr3_4:61463598-61463617 Msa0511800:CDS 45.0%
! TGTTTTCCTTGCGATGCGAA+TGG - chr3_4:61463759-61463778 None:intergenic 45.0%
GTAGATGTGCAAATCTCGCA+TGG + chr3_4:61463861-61463880 Msa0511800:intron 45.0%
!! GAATCACACACTTGTTGTGG+TGG + chr3_4:61464212-61464231 Msa0511800:intron 45.0%
CTACTCAGTACTCCTACACA+CGG + chr3_4:61464299-61464318 Msa0511800:CDS 45.0%
!!! GAGAGCCAGTAGTTTTGGTT+AGG - chr3_4:61464333-61464352 None:intergenic 45.0%
! CGATTGAGAGCCAGTAGTTT+TGG - chr3_4:61464338-61464357 None:intergenic 45.0%
TTCCATAAGGGAGTGATTGG+TGG - chr3_4:61464450-61464469 None:intergenic 45.0%
TCGTTCCATAAGGGAGTGAT+TGG - chr3_4:61464453-61464472 None:intergenic 45.0%
CGCTCGAAATCGTTCCATAA+GGG - chr3_4:61464462-61464481 None:intergenic 45.0%
! ATTGTGCGGTCTGCGATTTT+TGG - chr3_4:61464537-61464556 None:intergenic 45.0%
!! GCTCCTAAGTAAGGTGTTGT+TGG - chr3_4:61464633-61464652 None:intergenic 45.0%
AATGGGAATCTATCTGGTGG+TGG - chr3_4:61464693-61464712 None:intergenic 45.0%
AAACGTGTAAACACCGTCAC+CGG - chr3_4:61464760-61464779 None:intergenic 45.0%
!!! TGGGTTTTGGGATATGGTGA+AGG + chr3_4:61464879-61464898 Msa0511800:CDS 45.0%
!!! GGGTTTTGGGATATGGTGAA+GGG + chr3_4:61464880-61464899 Msa0511800:CDS 45.0%
GGTGAAGGGATATTTCAACC+AGG + chr3_4:61464894-61464913 Msa0511800:CDS 45.0%
ATTTGACACGTGCACCTTTG+AGG + chr3_4:61464937-61464956 Msa0511800:CDS 45.0%
TTGGACTGCCTTGAGGTTTA+AGG + chr3_4:61464986-61465005 Msa0511800:CDS 45.0%
AGGCAGATAATCCTGGTGTT+TGG + chr3_4:61465006-61465025 Msa0511800:CDS 45.0%
GGCAGATAATCCTGGTGTTT+GGG + chr3_4:61465007-61465026 Msa0511800:CDS 45.0%
CAATGAAATGCCCAAACACC+AGG - chr3_4:61465020-61465039 None:intergenic 45.0%
ACCACATTTGCATCTGGGAA+TGG + chr3_4:61465049-61465068 Msa0511800:CDS 45.0%
CCACATTTGCATCTGGGAAT+GGG + chr3_4:61465050-61465069 Msa0511800:CDS 45.0%
!! GCCGAGGGTGTTCATAAAAT+TGG + chr3_4:61465083-61465102 Msa0511800:CDS 45.0%
! CCACAAGTAAGAGCATGTGT+AGG - chr3_4:61465116-61465135 None:intergenic 45.0%
CCTACACATGCTCTTACTTG+TGG + chr3_4:61465113-61465132 Msa0511800:CDS 45.0%
!! CTCAGTTGTGGGTGTTGTTT+AGG - chr3_4:61465157-61465176 None:intergenic 45.0%
! GCTTAGCTAGTCTCAGTTGT+GGG - chr3_4:61465168-61465187 None:intergenic 45.0%
! AGCTTAGCTAGTCTCAGTTG+TGG - chr3_4:61465169-61465188 None:intergenic 45.0%
ATCACATTATGGCCTATGGG+TGG + chr3_4:61465256-61465275 Msa0511800:three_prime_UTR 45.0%
! ATGAAGGCGAGTTGGACAAA+TGG - chr3_4:61465332-61465351 None:intergenic 45.0%
!! ATATATTTAACATATATATT+TGG - chr3_4:61459601-61459620 None:intergenic 5.0%
! TCAGCTCTAATAGTTGGGCC+AGG - chr3_4:61459059-61459078 None:intergenic 50.0%
!! CTGTAGAGAGCTTGTTGGTG+AGG - chr3_4:61459106-61459125 None:intergenic 50.0%
CACCAACAAGCTCTCTACAG+AGG + chr3_4:61459106-61459125 Msa0511800:CDS 50.0%
TCCCTCTGTAGAGAGCTTGT+TGG - chr3_4:61459111-61459130 None:intergenic 50.0%
TCACTGGCATGGAATCAGAC+AGG + chr3_4:61459139-61459158 Msa0511800:CDS 50.0%
CGTGAGAGTGAGAGTAGAGA+TGG + chr3_4:61459506-61459525 Msa0511800:intron 50.0%
!! TTTGCGGTTTCGGTTTGGGT+TGG - chr3_4:61459841-61459860 None:intergenic 50.0%
!! CTCAACCGCATGGTTTGGTT+TGG + chr3_4:61459901-61459920 Msa0511800:intron 50.0%
!! CCGCATGGTTTGGTTTGGTT+TGG + chr3_4:61459906-61459925 Msa0511800:intron 50.0%
!! TCGGTTGGTGCGGTTTTTCA+GGG - chr3_4:61460332-61460351 None:intergenic 50.0%
!! ATCGGTTGGTGCGGTTTTTC+AGG - chr3_4:61460333-61460352 None:intergenic 50.0%
!! GCGGTTTGGTTTAGATCGGT+TGG - chr3_4:61460347-61460366 None:intergenic 50.0%
!!! TGCGGTTTGGTTCGGTTTTG+AGG - chr3_4:61460468-61460487 None:intergenic 50.0%
!! GTCATAGATAGGGGTGTTCG+CGG - chr3_4:61460491-61460510 None:intergenic 50.0%
ATTGGAACTCCTTGGGCTGA+TGG + chr3_4:61460661-61460680 Msa0511800:CDS 50.0%
TATATCTCCCAGGCCAGCAA+TGG + chr3_4:61460820-61460839 Msa0511800:intron 50.0%
TATGGTATGCAGAGAGCAGC+AGG + chr3_4:61460985-61461004 Msa0511800:CDS 50.0%
ATGGTATGCAGAGAGCAGCA+GGG + chr3_4:61460986-61461005 Msa0511800:CDS 50.0%
ATCTCATTGGGGCTGAAGAG+AGG - chr3_4:61461134-61461153 None:intergenic 50.0%
TCTCTTCAGCCCCAATGAGA+TGG + chr3_4:61461133-61461152 Msa0511800:CDS 50.0%
CTCTTCAGCCCCAATGAGAT+GGG + chr3_4:61461134-61461153 Msa0511800:CDS 50.0%
GGTTCACCAACCCATCTCAT+TGG - chr3_4:61461147-61461166 None:intergenic 50.0%
GGACAATGAGACGAGGACTT+TGG - chr3_4:61461738-61461757 None:intergenic 50.0%
! GCTCTCTTTGAGAGTTGGGA+GGG - chr3_4:61461759-61461778 None:intergenic 50.0%
!! TGTGTGTGTGGATTGGGGAA+TGG - chr3_4:61462182-61462201 None:intergenic 50.0%
TGAGAGGTGGAGTATGCACA+TGG - chr3_4:61462226-61462245 None:intergenic 50.0%
TGGAGCTGAAACAGGTGCTA+AGG - chr3_4:61462263-61462282 None:intergenic 50.0%
!! GATGATGGTGGAGCTGAAAC+AGG - chr3_4:61462271-61462290 None:intergenic 50.0%
!! GGGTATGGGTTTGATGATGG+TGG - chr3_4:61462283-61462302 None:intergenic 50.0%
! GGGTGATGGTAGAGCTGAAA+TGG - chr3_4:61462353-61462372 None:intergenic 50.0%
AATGAGTATGGAGTGGGTGC+AGG - chr3_4:61462445-61462464 None:intergenic 50.0%
! CTATGCTCACGGGACCTTTT+TGG - chr3_4:61462733-61462752 None:intergenic 50.0%
ACCAACTGAGCTATGCTCAC+GGG - chr3_4:61462743-61462762 None:intergenic 50.0%
GAAATTGCATTGAGGCAGGG+TGG - chr3_4:61463498-61463517 None:intergenic 50.0%
GGCGCTACTTCGAGAATCTT+GGG - chr3_4:61463542-61463561 None:intergenic 50.0%
TGGCGCTACTTCGAGAATCT+TGG - chr3_4:61463543-61463562 None:intergenic 50.0%
! GGCCAAGTTGAGAGAAGCTA+AGG - chr3_4:61463603-61463622 None:intergenic 50.0%
! CTTGTTGTGGTGGAAGCAGA+TGG + chr3_4:61464222-61464241 Msa0511800:CDS 50.0%
!! CGTGTGTAGGAGTACTGAGT+AGG - chr3_4:61464301-61464320 None:intergenic 50.0%
CATAAGGGAGTGATTGGTGG+TGG - chr3_4:61464447-61464466 None:intergenic 50.0%
CACCACCAATCACTCCCTTA+TGG + chr3_4:61464445-61464464 Msa0511800:CDS 50.0%
GCGCTCGAAATCGTTCCATA+AGG - chr3_4:61464463-61464482 None:intergenic 50.0%
!!! TCTGCGATTTTTGGTGGCTG+TGG - chr3_4:61464528-61464547 None:intergenic 50.0%
CCAAGTACAACAACCGGTGA+CGG + chr3_4:61464744-61464763 Msa0511800:CDS 50.0%
CTCAAGGCAGTCCAACCATA+CGG - chr3_4:61464981-61465000 None:intergenic 50.0%
CCCATTCCCAGATGCAAATG+TGG - chr3_4:61465053-61465072 None:intergenic 50.0%
CAGAGAGCAGCAGGGTTGTA+TGG + chr3_4:61460994-61461013 Msa0511800:CDS 55.0%
TCAGCCCCAATGAGATGGGT+TGG + chr3_4:61461138-61461157 Msa0511800:CDS 55.0%
!! GAGATGGGTTGGTGAACCAC+AGG + chr3_4:61461149-61461168 Msa0511800:CDS 55.0%
TTGGGAGGGACAATGAGACG+AGG - chr3_4:61461745-61461764 None:intergenic 55.0%
! GGCTCTCTTTGAGAGTTGGG+AGG - chr3_4:61461760-61461779 None:intergenic 55.0%
GAGGTGGAGTATGCACATGG+AGG - chr3_4:61462223-61462242 None:intergenic 55.0%
TCCCGTGAGCATAGCTCAGT+TGG + chr3_4:61462739-61462758 Msa0511800:intron 55.0%
AAGTGAGTTCTCACCACCGC+TGG + chr3_4:61463017-61463036 Msa0511800:intron 55.0%
TAGGGTCTTGGTCCGTGTGT+AGG - chr3_4:61464314-61464333 None:intergenic 55.0%
TGGCTGTGGTGTTCCCATTC+TGG - chr3_4:61464514-61464533 None:intergenic 55.0%
!! GTGCGGTCTGCGATTTTTGG+TGG - chr3_4:61464534-61464553 None:intergenic 55.0%
! CCGTCACCGGTTGTTGTACT+TGG - chr3_4:61464747-61464766 None:intergenic 55.0%
CGTATGGTTGGACTGCCTTG+AGG + chr3_4:61464979-61464998 Msa0511800:CDS 55.0%
!! GTTCGCGGTGCGGTTTGGTT+CGG - chr3_4:61460476-61460495 None:intergenic 60.0%
!! AGATAGGGGTGTTCGCGGTG+CGG - chr3_4:61460486-61460505 None:intergenic 60.0%
GCAGCAGTTCCATCAGCCCA+AGG - chr3_4:61460673-61460692 None:intergenic 60.0%
GAGTATGGAGTGGGTGCAGG+TGG - chr3_4:61462442-61462461 None:intergenic 60.0%
GTGGAGGTGGTTGTGGCCAG+CGG - chr3_4:61463036-61463055 None:intergenic 65.0%
! GGGGTGTTCGCGGTGCGGTT+TGG - chr3_4:61460481-61460500 None:intergenic 70.0%
AGGGGTCGGGGTTCGAACCC+CGG + chr3_4:61462778-61462797 Msa0511800:intron 70.0%
GAGGTGGTTGTGGCCAGCGG+TGG - chr3_4:61463033-61463052 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 61458804 61465465 61458804 ID=Msa0511800;Name=Msa0511800
chr3_4 mRNA 61458804 61465465 61458804 ID=Msa0511800-mRNA-1;Parent=Msa0511800;Name=Msa0511800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=96|1|1|1|1|1|5|290|574
chr3_4 exon 61458804 61459160 61458804 ID=Msa0511800-mRNA-1:exon:14958;Parent=Msa0511800-mRNA-1
chr3_4 exon 61460661 61460753 61460661 ID=Msa0511800-mRNA-1:exon:14959;Parent=Msa0511800-mRNA-1
chr3_4 exon 61460958 61461170 61460958 ID=Msa0511800-mRNA-1:exon:14960;Parent=Msa0511800-mRNA-1
chr3_4 exon 61463434 61463628 61463434 ID=Msa0511800-mRNA-1:exon:14961;Parent=Msa0511800-mRNA-1
chr3_4 exon 61464213 61465465 61464213 ID=Msa0511800-mRNA-1:exon:14962;Parent=Msa0511800-mRNA-1
chr3_4 five_prime_UTR 61458804 61458899 61458804 ID=Msa0511800-mRNA-1:five_prime_utr;Parent=Msa0511800-mRNA-1
chr3_4 CDS 61458900 61459160 61458900 ID=Msa0511800-mRNA-1:cds;Parent=Msa0511800-mRNA-1
chr3_4 CDS 61460661 61460753 61460661 ID=Msa0511800-mRNA-1:cds;Parent=Msa0511800-mRNA-1
chr3_4 CDS 61460958 61461170 61460958 ID=Msa0511800-mRNA-1:cds;Parent=Msa0511800-mRNA-1
chr3_4 CDS 61463434 61463628 61463434 ID=Msa0511800-mRNA-1:cds;Parent=Msa0511800-mRNA-1
chr3_4 CDS 61464213 61465175 61464213 ID=Msa0511800-mRNA-1:cds;Parent=Msa0511800-mRNA-1
chr3_4 three_prime_UTR 61465176 61465465 61465176 ID=Msa0511800-mRNA-1:three_prime_utr;Parent=Msa0511800-mRNA-1
Gene Sequence

>Msa0511800

ATGAGTTTGTTAAAAGCTGTTTTTGTTTGGTGTATATGGTTAGGGTTATTTGAGTTATCATTAGCAAAAGTGAAACACTACAAGTTTGATGTGGAATACATGTACAAAACTCCAGATTGCATAGAGCATGTTGTGATGGGAATCAATGGTCAGTTTCCTGGCCCAACTATTAGAGCTGAAGTTGGTGACACCGTTGTCATTGACCTCACCAACAAGCTCTCTACAGAGGGAACTGTTATTCACTGGCATGGAATCAGACAGATTGGAACTCCTTGGGCTGATGGAACTGCTGCAATCTCTCAGTGTGCTATAAATCCAGGAGAAACTTTTCATTACAGATTCATTGTTGACAGGCCTGGTACATATTTCTATCATGGACACTATGGTATGCAGAGAGCAGCAGGGTTGTATGGTTCTCTAATAGTAGATTTACCAAACAACCAAAGCGAGCCATTTCATTATGATGGTGAGTTTAATCTGCTCCTTAGTGATCTGTGGCACACAAGTTCACAAGAACAAGAGGTTGGCCTCTCTTCAGCCCCAATGAGATGGGTTGGTGAACCACAGAGCTTGCTCATCAATGGAAGAGGGCAGTTCAATTGTTCCCTAGCAGCTAATTTCGTGAACACCACCCTGCCTCAATGCAATTTCAAAGGTGGTGAAGAATGCGCACCCAAGATTCTCGAAGTAGCGCCAAAAAAGACCTACAGAATTAGGATTGCTAGTACAACGTCCTTAGCTTCTCTCAACTTGGCCATTTCAAATCACACACTTGTTGTGGTGGAAGCAGATGGAAACTACGTGCACCCATTCACAGTTGATAGCATAGACATCTACTCAGGTGAAACCTACTCAGTACTCCTACACACGGACCAAGACCCTAACCAAAACTACTGGCTCTCAATCGGAATTATAAGCAGAAAATCAGACACACCACAAGCCCTAACAATCCTTAACTATAATACAAACCCTGCCTCAACTTTCCCTATATTACCACCACCAATCACTCCCTTATGGAACGATTTCGAGCGCAGCAAAGCATTCACAAAACAAATCATTTCCAGAATGGGAACACCACAGCCACCAAAAATCGCAGACCGCACAATTTACCTCCTCAACACACAAAGCAAAATTGGTAATTTCACTAAATGGGCTATTAACAATGTTTCATTAACATTGCCAACAACACCTTACTTAGGAGCAATCAAATATAAACTAAACAATACATTTGATAGAAATCCACCACCAGATAGATTCCCATTTGATTTCGACATATTTAAAACTCCAGTTAATCCAAGTACAACAACCGGTGACGGTGTTTACACGTTTCACTTAAATGAGGTTGTTGATGTGATACTACAAAATGCAAACATGTTAAAAGATAATACTAGTGAAGTTCATCCATGGCATTTACATGGACATGATTTTTGGGTTTTGGGATATGGTGAAGGGATATTTCAACCAGGTGTTCATCAGAAAAGTTTGAATTTGACACGTGCACCTTTGAGGAACACTGCAGTTATATTTCCGTATGGTTGGACTGCCTTGAGGTTTAAGGCAGATAATCCTGGTGTTTGGGCATTTCATTGTCATATTGAACCACATTTGCATCTGGGAATGGGTGTTATTTTTGCCGAGGGTGTTCATAAAATTGGGAACATACCTACACATGCTCTTACTTGTGGTGCTACAGCCAAGATGTTCCTAAACAACACCCACAACTGA
Protein sequence

>Msa0511800

MSLLKAVFVWCIWLGLFELSLAKVKHYKFDVEYMYKTPDCIEHVVMGINGQFPGPTIRAEVGDTVVIDLTNKLSTEGTVIHWHGIRQIGTPWADGTAAISQCAINPGETFHYRFIVDRPGTYFYHGHYGMQRAAGLYGSLIVDLPNNQSEPFHYDGEFNLLLSDLWHTSSQEQEVGLSSAPMRWVGEPQSLLINGRGQFNCSLAANFVNTTLPQCNFKGGEECAPKILEVAPKKTYRIRIASTTSLASLNLAISNHTLVVVEADGNYVHPFTVDSIDIYSGETYSVLLHTDQDPNQNYWLSIGIISRKSDTPQALTILNYNTNPASTFPILPPPITPLWNDFERSKAFTKQIISRMGTPQPPKIADRTIYLLNTQSKIGNFTKWAINNVSLTLPTTPYLGAIKYKLNNTFDRNPPPDRFPFDFDIFKTPVNPSTTTGDGVYTFHLNEVVDVILQNANMLKDNTSEVHPWHLHGHDFWVLGYGEGIFQPGVHQKSLNLTRAPLRNTAVIFPYGWTALRFKADNPGVWAFHCHIEPHLHLGMGVIFAEGVHKIGNIPTHALTCGATAKMFLNNTHN*