AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0163690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163690 MtrunA17_Chr1g0178931 94.842 349 17 1 1 349 1 348 0.0 661
Msa0163690 MtrunA17_Chr1g0178941 76.716 335 69 4 23 349 26 359 0.0 528
Msa0163690 MtrunA17_Chr7g0266061 61.420 324 118 4 23 340 23 345 1.64e-151 430
Msa0163690 MtrunA17_Chr1g0178961 78.539 219 46 1 132 349 1 219 1.02e-125 359
Msa0163690 MtrunA17_Chr1g0198381 51.780 309 137 5 38 340 2 304 1.95e-110 324
Msa0163690 MtrunA17_Chr1g0198351 43.544 333 175 5 15 340 18 344 7.20e-101 301
Msa0163690 MtrunA17_Chr1g0198391 41.791 335 150 7 38 340 33 354 2.35e-86 265
Msa0163690 MtrunA17_Chr1g0198401 39.925 268 152 3 87 349 8 271 8.36e-71 222
Msa0163690 MtrunA17_Chr1g0178951 75.926 108 23 2 23 128 3 109 4.04e-51 165
Msa0163690 MtrunA17_Chr8g0344941 29.143 350 221 13 9 339 14 355 4.11e-36 134
Msa0163690 MtrunA17_Chr8g0349321 31.613 310 186 11 39 331 38 338 2.31e-35 132
Msa0163690 MtrunA17_Chr2g0301641 30.449 312 189 12 39 329 44 348 3.50e-34 129
Msa0163690 MtrunA17_Chr3g0077581 29.310 348 211 11 7 329 5 342 4.08e-33 126
Msa0163690 MtrunA17_Chr3g0131321 30.341 323 178 14 39 330 35 341 4.64e-32 124
Msa0163690 MtrunA17_Chr7g0275291 29.412 357 204 14 7 331 11 351 6.37e-32 123
Msa0163690 MtrunA17_Chr8g0349341 30.449 312 187 12 39 331 38 338 5.04e-31 120
Msa0163690 MtrunA17_Chr4g0017431 28.221 326 193 12 39 335 32 345 1.26e-30 119
Msa0163690 MtrunA17_Chr1g0156921 27.224 371 237 14 1 348 4 364 8.47e-29 114
Msa0163690 MtrunA17_Chr8g0349301 31.724 290 169 12 39 310 38 316 8.91e-29 113
Msa0163690 MtrunA17_Chr8g0344931 29.586 338 202 15 12 329 11 332 2.80e-28 113
Msa0163690 MtrunA17_Chr3g0099151 27.300 337 204 12 31 339 80 403 3.26e-28 114
Msa0163690 MtrunA17_Chr1g0156911 27.747 364 227 14 9 349 5 355 5.58e-28 112
Msa0163690 MtrunA17_Chr5g0438631 28.045 353 215 14 17 344 9 347 6.64e-28 111
Msa0163690 MtrunA17_Chr1g0189901 27.108 332 202 13 34 339 27 344 2.43e-27 110
Msa0163690 MtrunA17_Chr1g0198361 42.636 129 70 3 149 274 3 130 3.55e-27 105
Msa0163690 MtrunA17_Chr2g0285001 27.760 317 190 14 39 333 34 333 5.93e-27 109
Msa0163690 MtrunA17_Chr1g0189891 28.571 364 196 20 10 339 4 337 8.33e-27 108
Msa0163690 MtrunA17_Chr3g0099161 26.786 336 206 13 31 339 85 407 1.48e-26 109
Msa0163690 MtrunA17_Chr3g0120861 28.529 333 206 11 39 349 39 361 1.90e-26 107
Msa0163690 MtrunA17_Chr4g0057991 26.611 357 227 11 7 337 10 357 4.85e-26 107
Msa0163690 MtrunA17_Chr3g0099231 25.826 333 212 12 31 339 21 342 7.98e-26 106
Msa0163690 MtrunA17_Chr5g0438621 26.765 340 216 14 12 329 5 333 8.99e-26 105
Msa0163690 MtrunA17_Chr7g0275001 25.294 340 217 13 33 347 20 347 9.09e-26 106
Msa0163690 MtrunA17_Chr2g0285061 27.485 342 203 13 15 331 16 337 1.42e-25 105
Msa0163690 MtrunA17_Chr2g0294301 28.754 313 194 12 40 331 37 341 1.70e-25 105
Msa0163690 MtrunA17_Chr2g0283511 26.836 354 227 11 17 341 10 360 2.23e-25 105
Msa0163690 MtrunA17_Chr5g0396511 28.037 321 179 15 40 328 48 348 2.91e-25 105
Msa0163690 MtrunA17_Chr3g0086641 26.571 350 204 14 12 331 16 342 5.87e-25 103
Msa0163690 MtrunA17_Chr2g0283501 26.480 321 205 8 39 331 32 349 6.19e-25 103
Msa0163690 MtrunA17_Chr2g0283481 26.462 325 207 12 39 335 48 368 1.05e-24 103
Msa0163690 MtrunA17_Chr7g0275011 26.875 320 192 14 37 329 33 337 1.08e-24 103
Msa0163690 MtrunA17_Chr5g0420811 26.765 340 219 12 13 336 6 331 1.11e-24 102
Msa0163690 MtrunA17_Chr2g0283191 27.642 369 214 18 1 336 9 357 1.85e-24 102
Msa0163690 MtrunA17_Chr4g0060811 25.915 328 205 12 40 342 29 343 3.18e-24 102
Msa0163690 MtrunA17_Chr8g0347751 25.201 373 222 12 1 331 1 358 3.23e-24 102
Msa0163690 MtrunA17_Chr1g0156891 27.692 325 205 12 39 342 44 359 3.92e-24 101
Msa0163690 MtrunA17_Chr1g0182811 25.758 330 207 12 36 339 31 348 4.05e-24 101
Msa0163690 MtrunA17_Chr5g0434621 28.037 321 196 13 40 338 27 334 5.14e-24 101
Msa0163690 MtrunA17_Chr7g0226911 26.016 369 227 13 10 339 7 368 5.39e-24 101
Msa0163690 MtrunA17_Chr1g0189931 25.833 360 220 15 7 339 6 345 5.63e-24 101
Msa0163690 MtrunA17_Chr3g0077571 28.344 314 188 12 39 330 31 329 8.71e-24 100
Msa0163690 MtrunA17_Chr4g0027521 28.391 317 192 12 39 330 28 334 1.13e-23 100
Msa0163690 MtrunA17_Chr7g0254461 24.868 378 222 14 9 339 13 375 1.20e-23 100
Msa0163690 MtrunA17_Chr1g0156901 25.895 363 233 15 9 346 18 369 1.31e-23 100
Msa0163690 MtrunA17_Chr8g0371491 26.554 354 227 13 5 335 2 345 2.00e-23 99.4
Msa0163690 MtrunA17_Chr5g0432101 27.879 330 198 15 39 340 34 351 2.16e-23 99.8
Msa0163690 MtrunA17_Chr7g0226931 26.478 389 229 14 1 339 1 382 3.07e-23 99.8
Msa0163690 MtrunA17_Chr3g0092131 26.316 323 210 10 40 342 25 339 3.29e-23 99.0
Msa0163690 MtrunA17_Chr7g0275021 26.361 349 212 14 8 329 7 337 3.36e-23 99.0
Msa0163690 MtrunA17_Chr8g0374101 25.938 320 198 14 40 330 39 348 4.51e-23 99.0
Msa0163690 MtrunA17_Chr5g0438641 26.509 381 216 18 1 348 1 350 4.55e-23 98.6
Msa0163690 MtrunA17_Chr4g0068441 29.429 333 198 15 40 347 37 357 6.04e-23 98.2
Msa0163690 MtrunA17_Chr8g0381581 25.816 337 208 10 39 339 41 371 8.70e-23 98.2
Msa0163690 MtrunA17_Chr5g0437421 24.242 330 217 10 33 337 27 348 8.83e-23 97.8
Msa0163690 MtrunA17_Chr3g0142921 27.576 330 207 16 39 346 37 356 9.49e-23 97.8
Msa0163690 MtrunA17_Chr8g0349331 28.146 302 177 10 39 331 36 306 9.72e-23 97.1
Msa0163690 MtrunA17_Chr3g0085231 26.934 349 204 17 7 330 1 323 2.38e-22 96.3
Msa0163690 MtrunA17_Chr2g0320671 27.190 331 209 12 39 347 31 351 2.55e-22 96.3
Msa0163690 MtrunA17_Chr4g0046151 24.650 357 230 15 7 336 9 353 3.03e-22 96.3
Msa0163690 MtrunA17_Chr5g0405821 27.195 353 215 16 9 333 14 352 4.19e-22 95.9
Msa0163690 MtrunA17_Chr6g0457921 24.716 352 228 15 11 339 6 343 4.31e-22 95.9
Msa0163690 MtrunA17_Chr2g0283531 25.770 357 232 10 13 339 3 356 1.91e-21 94.0
Msa0163690 MtrunA17_Chr8g0380041 25.926 351 208 15 9 331 9 335 1.97e-21 94.0
Msa0163690 MtrunA17_Chr7g0274991 25.905 359 211 16 1 328 1 335 2.16e-21 94.0
Msa0163690 MtrunA17_Chr5g0405831 25.938 320 204 13 39 335 44 353 2.20e-21 94.0
Msa0163690 MtrunA17_Chr3g0105401 26.284 331 215 12 39 348 29 351 2.98e-21 93.2
Msa0163690 MtrunA17_Chr3g0112821 26.205 332 200 14 35 335 27 344 6.22e-21 92.4
Msa0163690 MtrunA17_Chr8g0380031 27.653 311 188 13 39 330 85 377 6.35e-21 93.2
Msa0163690 MtrunA17_Chr6g0450711 25.000 364 228 12 1 329 82 435 1.27e-20 92.4
Msa0163690 MtrunA17_Chr1g0157001 26.814 317 202 11 43 339 41 347 1.46e-20 91.7
Msa0163690 MtrunA17_Chr2g0284991 29.102 323 181 16 39 335 34 334 2.06e-20 91.3
Msa0163690 MtrunA17_Chr1g0160031 25.140 358 224 14 15 339 19 365 2.54e-20 90.9
Msa0163690 MtrunA17_Chr4g0008851 25.217 345 214 15 9 329 13 337 3.39e-20 90.5
Msa0163690 MtrunA17_Chr1g0159971 24.561 342 207 11 37 339 46 375 8.54e-20 89.7
Msa0163690 MtrunA17_Chr7g0215961 25.352 355 210 14 9 339 10 333 8.63e-20 89.4
Msa0163690 MtrunA17_Chr3g0085881 28.435 313 181 14 39 330 34 324 1.03e-19 89.0
Msa0163690 MtrunA17_Chr1g0160011 24.403 377 235 14 1 340 4 367 3.11e-19 87.8
Msa0163690 MtrunA17_Chr2g0301541 25.212 353 209 12 13 335 12 339 3.52e-19 87.4
Msa0163690 MtrunA17_Chr3g0096551 25.714 350 204 13 35 339 26 364 3.66e-19 87.8
Msa0163690 MtrunA17_Chr2g0284921 27.879 330 189 15 39 337 35 346 4.03e-19 87.4
Msa0163690 MtrunA17_Chr3g0093031 26.190 336 200 15 35 335 27 349 4.58e-19 87.4
Msa0163690 MtrunA17_Chr1g0198411 73.585 53 12 1 38 90 32 82 8.44e-19 80.5
Msa0163690 MtrunA17_Chr7g0271551 25.974 308 209 6 39 331 37 340 1.15e-18 85.9
Msa0163690 MtrunA17_Chr1g0160101 25.444 338 206 13 39 339 43 371 1.38e-18 86.3
Msa0163690 MtrunA17_Chr8g0371481 25.220 341 220 14 32 348 35 364 2.03e-18 85.5
Msa0163690 MtrunA17_Chr2g0301581 24.929 353 210 11 13 335 12 339 2.56e-18 85.1
Msa0163690 MtrunA17_Chr1g0159981 23.120 359 234 12 15 340 26 375 3.10e-18 85.1
Msa0163690 MtrunA17_Chr8g0352901 24.923 325 207 11 39 331 29 348 6.48e-18 84.0
Msa0163690 MtrunA17_Chr2g0317261 25.994 327 196 14 37 335 29 337 9.58e-18 83.2
Msa0163690 MtrunA17_Chr6g0450731 24.444 360 216 15 1 329 1 335 1.20e-17 83.2
Msa0163690 MtrunA17_Chr3g0142941 27.103 321 201 13 39 339 48 355 1.46e-17 82.8
Msa0163690 MtrunA17_Chr1g0159991 23.416 363 228 13 15 340 16 365 1.90e-17 82.8
Msa0163690 MtrunA17_Chr2g0284951 27.244 312 188 13 39 330 34 326 1.93e-17 82.4
Msa0163690 MtrunA17_Chr5g0444401 24.528 318 204 12 39 331 29 335 2.74e-17 82.0
Msa0163690 MtrunA17_Chr6g0450701 24.217 351 223 11 12 331 16 354 3.29e-17 82.0
Msa0163690 MtrunA17_Chr2g0317271 25.994 327 196 14 37 335 29 337 5.88e-17 80.9
Msa0163690 MtrunA17_Chr8g0341001 25.568 352 189 13 39 347 33 354 9.59e-17 80.5
Msa0163690 MtrunA17_Chr2g0330781 25.000 336 211 12 39 347 32 353 9.69e-17 80.5
Msa0163690 MtrunA17_Chr2g0284941 25.786 318 172 14 39 332 34 311 1.02e-16 80.1
Msa0163690 MtrunA17_Chr0c01g0489581 25.688 327 197 14 37 335 29 337 1.31e-16 80.1
Msa0163690 MtrunA17_Chr8g0371471 24.412 340 223 14 32 348 35 363 1.59e-16 79.7
Msa0163690 MtrunA17_Chr0c01g0489571 25.688 327 197 14 37 335 29 337 1.62e-16 79.7
Msa0163690 MtrunA17_Chr3g0104821 24.779 339 204 16 35 335 41 366 3.15e-16 79.0
Msa0163690 MtrunA17_Chr7g0226941 25.153 326 206 11 39 331 34 354 4.32e-16 78.6
Msa0163690 MtrunA17_Chr8g0370951 25.552 317 201 13 39 329 32 339 4.12e-15 75.5
Msa0163690 MtrunA17_Chr8g0370981 20.812 394 245 13 15 348 23 409 4.32e-13 69.7
Msa0163690 MtrunA17_Chr2g0301591 25.882 255 166 6 13 253 12 257 4.57e-13 68.9
Msa0163690 MtrunA17_Chr7g0273101 24.157 356 217 13 23 339 17 358 1.20e-12 68.2
Msa0163690 MtrunA17_Chr1g0191461 24.789 355 211 10 16 330 12 350 2.92e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163690 AT5G03610.1 55.263 342 144 5 7 341 11 350 2.24e-130 377
Msa0163690 AT3G09930.2 48.476 328 160 5 22 341 21 347 4.74e-109 323
Msa0163690 AT3G09930.1 48.476 328 160 5 22 341 21 347 4.74e-109 323
Msa0163690 AT2G36325.1 39.368 348 188 10 8 339 10 350 2.77e-76 239
Msa0163690 AT5G03600.2 38.554 332 189 7 13 339 25 346 1.31e-74 234
Msa0163690 AT5G03600.1 39.490 314 176 6 31 339 7 311 4.79e-74 232
Msa0163690 AT5G03590.3 36.897 290 133 9 59 341 7 253 2.56e-56 184
Msa0163690 AT5G03590.1 32.526 289 116 8 59 341 7 222 8.94e-45 154
Msa0163690 AT1G53920.1 30.141 355 222 11 8 343 18 365 4.78e-40 145
Msa0163690 AT1G28640.1 29.598 348 208 10 14 330 11 352 3.84e-33 127
Msa0163690 AT5G03590.2 39.791 191 107 7 9 195 7 193 3.39e-32 119
Msa0163690 AT5G41890.1 29.545 352 203 14 10 331 12 348 6.77e-32 123
Msa0163690 AT5G08460.1 29.050 358 214 16 4 330 9 357 2.13e-30 119
Msa0163690 AT1G33811.1 28.045 353 198 13 13 329 10 342 3.95e-30 118
Msa0163690 AT1G20130.2 27.410 332 210 9 39 345 185 510 6.12e-30 120
Msa0163690 AT1G20130.1 27.410 332 210 9 39 345 205 530 6.44e-30 120
Msa0163690 AT1G20120.1 30.063 316 189 14 39 332 79 384 1.24e-28 115
Msa0163690 AT1G06990.1 27.108 332 205 10 39 345 38 357 1.46e-28 114
Msa0163690 AT2G31540.1 27.711 332 204 12 36 340 29 351 1.91e-28 114
Msa0163690 AT1G58430.1 27.139 339 216 11 27 342 23 353 2.01e-28 114
Msa0163690 AT2G27360.1 28.152 341 187 12 37 335 32 356 3.01e-28 114
Msa0163690 AT2G30310.1 25.138 362 238 11 3 342 2 352 3.67e-28 113
Msa0163690 AT1G28670.1 27.841 352 220 8 14 335 11 358 4.42e-28 113
Msa0163690 AT1G28650.1 27.500 360 212 12 13 335 12 359 6.12e-28 112
Msa0163690 AT1G59406.1 27.596 366 220 16 6 347 4 348 1.19e-27 111
Msa0163690 AT1G59030.1 27.596 366 220 16 6 347 4 348 1.19e-27 111
Msa0163690 AT1G58725.1 27.596 366 220 16 6 347 4 348 1.19e-27 111
Msa0163690 AT1G71691.2 29.022 317 181 14 39 329 56 354 1.47e-27 111
Msa0163690 AT2G40250.1 27.761 335 190 11 35 335 33 349 5.03e-27 110
Msa0163690 AT2G04570.1 27.628 333 207 12 39 348 29 350 7.71e-27 109
Msa0163690 AT5G42170.1 25.786 318 211 9 39 339 51 360 7.85e-27 109
Msa0163690 AT2G19060.1 28.710 310 195 11 40 335 32 329 1.05e-26 108
Msa0163690 AT4G01130.1 27.731 357 212 12 10 331 11 356 1.30e-26 109
Msa0163690 AT1G54030.1 26.974 304 193 9 36 329 50 334 1.71e-26 109
Msa0163690 AT5G33370.1 26.220 328 206 13 36 339 28 343 2.40e-26 108
Msa0163690 AT1G54010.1 27.879 330 212 13 12 329 13 328 4.44e-26 107
Msa0163690 AT5G18430.1 27.619 315 198 12 37 329 27 333 6.05e-26 107
Msa0163690 AT1G54020.2 28.529 333 205 14 15 334 13 325 8.72e-26 106
Msa0163690 AT3G14820.1 27.726 321 206 10 39 342 33 344 1.23e-25 105
Msa0163690 AT2G30220.1 25.714 350 228 11 15 342 12 351 1.31e-25 105
Msa0163690 AT1G71250.1 27.389 314 194 13 39 329 42 344 1.36e-25 106
Msa0163690 AT1G75890.3 27.378 347 217 13 10 332 48 383 2.49e-25 105
Msa0163690 AT1G75890.2 27.378 347 217 13 10 332 19 354 2.50e-25 105
Msa0163690 AT5G40990.1 28.435 313 196 10 39 329 38 344 4.18e-25 104
Msa0163690 AT1G54000.1 26.970 330 215 12 12 329 13 328 4.56e-25 105
Msa0163690 AT1G20132.1 26.946 334 212 10 36 347 59 382 8.12e-25 104
Msa0163690 AT3G14220.1 29.167 312 196 14 39 337 33 332 1.04e-24 103
Msa0163690 AT1G58520.3 26.970 330 201 12 39 347 31 341 1.59e-24 102
Msa0163690 AT1G58525.1 26.970 330 201 12 39 347 31 341 1.59e-24 102
Msa0163690 AT1G28610.2 26.757 370 212 14 14 341 6 358 2.87e-24 102
Msa0163690 AT1G28570.1 25.215 349 228 10 13 332 9 353 4.26e-24 102
Msa0163690 AT5G45960.1 27.920 351 207 15 21 340 30 365 5.48e-24 101
Msa0163690 AT4G28780.1 27.139 339 213 13 32 347 25 352 5.49e-24 101
Msa0163690 AT1G29660.1 27.198 364 212 19 1 335 1 340 5.89e-24 101
Msa0163690 AT3G14225.2 27.974 311 200 10 39 329 38 344 7.41e-24 101
Msa0163690 AT1G75880.2 27.747 364 230 14 6 346 19 372 7.72e-24 101
Msa0163690 AT1G28590.1 26.100 341 205 11 37 341 35 364 7.97e-24 101
Msa0163690 AT2G24560.1 24.159 327 216 11 39 342 35 352 8.82e-24 100
Msa0163690 AT3G04290.1 25.610 328 208 13 36 339 27 342 1.08e-23 100
Msa0163690 AT5G33370.2 30.000 240 146 9 36 255 28 265 1.14e-23 100
Msa0163690 AT1G75880.1 27.671 365 230 14 6 346 19 373 1.24e-23 100
Msa0163690 AT1G28600.1 26.111 360 215 12 14 335 6 352 1.37e-23 100
Msa0163690 AT1G75890.1 26.316 361 216 13 10 332 19 367 1.61e-23 100
Msa0163690 AT1G75930.1 24.786 351 218 13 6 335 5 330 1.88e-23 99.8
Msa0163690 AT3G48460.1 26.027 365 231 12 1 335 1 356 2.37e-23 100
Msa0163690 AT3G53100.1 26.048 334 209 13 39 347 30 350 4.31e-23 99.0
Msa0163690 AT3G14210.1 26.807 332 203 14 35 349 33 341 5.78e-23 99.0
Msa0163690 AT5G37690.1 25.484 310 205 11 40 331 29 330 6.23e-23 98.6
Msa0163690 AT4G10950.2 27.219 338 195 14 39 345 72 389 8.69e-23 98.6
Msa0163690 AT2G19050.1 27.673 318 203 12 40 344 33 336 9.82e-23 97.8
Msa0163690 AT5G45910.1 26.879 346 216 10 29 339 18 361 9.91e-23 98.2
Msa0163690 AT2G03980.2 25.455 330 217 13 39 348 44 364 1.04e-22 98.2
Msa0163690 AT2G03980.3 25.455 330 217 13 39 348 44 364 1.04e-22 98.2
Msa0163690 AT2G03980.1 25.455 330 217 13 39 348 44 364 1.04e-22 98.2
Msa0163690 AT2G03980.4 25.455 330 217 13 39 348 44 364 1.04e-22 98.2
Msa0163690 AT3G50400.1 25.000 320 204 12 40 331 36 347 1.09e-22 98.2
Msa0163690 AT3G14225.1 26.814 317 204 9 39 331 38 350 1.25e-22 97.8
Msa0163690 AT1G28580.1 25.352 355 217 10 15 332 13 356 1.40e-22 97.8
Msa0163690 AT1G20135.1 25.148 338 213 10 15 335 12 326 1.44e-22 97.1
Msa0163690 AT5G45950.1 26.912 353 221 12 11 347 20 351 4.97e-22 95.9
Msa0163690 AT1G71120.1 23.529 323 226 9 39 347 32 347 7.49e-22 95.5
Msa0163690 AT1G29670.1 27.246 345 206 15 12 330 9 334 7.50e-22 95.5
Msa0163690 AT4G10950.1 26.822 343 186 15 39 345 72 385 9.10e-22 95.9
Msa0163690 AT1G71691.3 29.434 265 154 11 39 280 56 310 9.26e-22 94.4
Msa0163690 AT4G26790.1 25.806 341 199 13 39 346 30 349 1.16e-21 94.7
Msa0163690 AT4G26790.2 25.806 341 199 13 39 346 30 349 1.16e-21 94.7
Msa0163690 AT5G22810.1 26.536 358 233 11 13 347 8 358 1.74e-21 94.4
Msa0163690 AT1G29670.2 27.171 357 212 16 1 331 69 403 1.93e-21 95.1
Msa0163690 AT2G23540.1 26.250 320 197 14 40 330 50 359 1.97e-21 94.7
Msa0163690 AT3G43570.1 25.779 353 203 13 13 347 8 319 2.18e-21 93.6
Msa0163690 AT1G75900.1 25.208 361 231 14 12 348 19 364 3.18e-21 94.0
Msa0163690 AT1G31550.2 26.549 339 205 11 37 341 35 363 3.18e-21 94.0
Msa0163690 AT5G15720.1 25.633 316 199 12 39 329 31 335 6.41e-21 92.8
Msa0163690 AT1G67830.1 24.332 337 213 9 39 339 31 361 9.48e-21 92.4
Msa0163690 AT1G73610.1 25.284 352 216 10 4 335 7 331 1.39e-20 91.7
Msa0163690 AT2G19010.1 27.362 307 193 12 39 330 31 322 1.43e-20 91.7
Msa0163690 AT1G28660.1 25.779 353 225 9 14 335 11 357 1.58e-20 92.0
Msa0163690 AT1G74460.1 25.455 330 204 12 40 342 25 339 1.60e-20 91.7
Msa0163690 AT2G19010.2 27.362 307 193 12 39 330 61 352 2.22e-20 91.7
Msa0163690 AT5G55050.1 24.179 335 217 12 39 346 40 364 3.53e-20 90.9
Msa0163690 AT1G53940.2 26.837 313 201 10 39 329 40 346 3.59e-20 90.9
Msa0163690 AT2G42990.1 24.412 340 216 14 14 329 9 331 4.25e-20 90.5
Msa0163690 AT5G14450.1 28.049 328 194 15 39 331 42 362 6.32e-20 90.5
Msa0163690 AT1G23500.1 25.562 356 209 12 10 335 3 332 7.13e-20 89.7
Msa0163690 AT1G54030.2 27.200 250 157 8 37 276 51 285 1.19e-19 88.6
Msa0163690 AT2G19050.2 29.876 241 152 9 40 267 33 269 1.27e-19 87.8
Msa0163690 AT1G75920.2 27.042 355 214 14 9 339 1 334 2.11e-19 88.2
Msa0163690 AT3G43550.1 29.514 288 171 13 15 280 8 285 2.46e-19 87.4
Msa0163690 AT1G31550.1 26.844 339 201 13 37 341 35 360 3.39e-19 88.2
Msa0163690 AT1G28660.2 25.496 353 225 9 14 335 11 356 3.61e-19 88.2
Msa0163690 AT5G45670.1 26.582 316 194 13 40 330 31 333 5.05e-19 87.4
Msa0163690 AT1G56670.1 23.295 352 233 8 7 335 13 350 5.68e-19 87.4
Msa0163690 AT5G03820.2 25.970 335 210 13 39 347 62 384 7.29e-19 87.4
Msa0163690 AT5G03820.1 25.970 335 210 13 39 347 34 356 7.43e-19 87.0
Msa0163690 AT3G16370.1 25.378 331 210 12 39 344 31 349 8.19e-19 86.7
Msa0163690 AT3G26430.1 25.223 337 210 10 39 339 32 362 4.44e-18 84.7
Msa0163690 AT3G27950.1 26.211 351 226 13 16 339 10 354 4.84e-18 84.7
Msa0163690 AT4G01130.2 27.181 298 179 10 10 280 11 297 8.02e-18 83.6
Msa0163690 AT5G03810.1 24.377 361 230 14 12 347 10 352 1.01e-17 83.6
Msa0163690 AT5G37690.2 24.516 310 200 12 40 331 29 322 1.10e-17 83.6
Msa0163690 AT2G24560.2 25.874 286 179 11 39 298 35 313 1.87e-17 82.4
Msa0163690 AT1G75910.1 25.212 353 219 13 11 339 3 334 4.58e-17 81.6
Msa0163690 AT5G15720.2 26.792 265 167 10 39 280 31 291 9.21e-17 80.5
Msa0163690 AT4G18970.1 25.633 316 197 13 40 330 30 332 1.84e-16 80.1
Msa0163690 AT4G18970.2 25.157 318 196 12 40 330 30 332 2.15e-16 80.1
Msa0163690 AT1G53940.1 27.820 266 165 9 39 283 40 299 2.86e-16 79.0
Msa0163690 AT4G30140.1 26.230 305 193 12 40 329 35 322 6.68e-16 78.2
Msa0163690 AT1G75920.1 26.099 364 209 15 15 339 2 344 7.70e-16 78.2
Msa0163690 AT1G54790.3 25.000 372 224 11 9 339 4 361 2.05e-15 77.0
Msa0163690 AT1G09390.1 23.729 354 227 10 8 335 11 347 2.33e-15 76.6
Msa0163690 AT5G63170.1 23.473 311 204 9 39 332 29 322 3.22e-15 76.3
Msa0163690 AT1G71691.1 25.726 241 142 10 112 329 27 253 9.78e-15 73.9
Msa0163690 AT1G75920.4 25.249 301 190 11 57 339 23 306 1.00e-14 74.3
Msa0163690 AT4G16230.1 28.696 230 141 9 7 218 3 227 3.44e-14 72.0
Msa0163690 AT1G54020.1 25.806 248 164 9 96 334 3 239 2.24e-13 70.1
Msa0163690 AT1G54020.5 25.806 248 164 9 96 334 3 239 2.24e-13 70.1
Msa0163690 AT1G54020.3 25.806 248 164 9 96 334 3 239 2.24e-13 70.1
Msa0163690 AT3G62280.1 24.922 321 197 14 39 331 37 341 2.28e-13 70.9
Msa0163690 AT1G56670.2 22.744 277 190 5 8 267 14 283 3.40e-12 66.6
Msa0163690 AT2G04020.2 25.243 309 163 16 39 329 44 302 3.95e-12 66.6
Msa0163690 AT4G01130.3 26.562 192 124 5 155 331 81 270 5.96e-12 65.9
Msa0163690 AT3G14210.2 26.761 213 129 9 148 349 17 213 1.86e-11 64.3
Msa0163690 AT2G04020.1 26.887 212 133 10 39 233 44 250 2.68e-11 63.5

Find 89 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAACGATCCTTGATATTA+TGG 0.176436 1_4:-42009632 None:intergenic
TCGATTTGAGTTGTCATATT+TGG 0.176525 1_4:-42009040 None:intergenic
CTTGGCTTCTTGGTTTAATT+TGG 0.178730 1_4:-42009541 None:intergenic
TGGTGTGATCCTTGGCTTCT+TGG 0.198536 1_4:-42009551 None:intergenic
ATCCGGAATCAAGTTTCTTT+TGG 0.200030 1_4:+42009739 Msa0163690:CDS
ATACAAAGAAGCCGAGTTTA+AGG 0.212624 1_4:-42009935 None:intergenic
AAATAATGTTAAGAAATATT+TGG 0.229415 1_4:+42009707 Msa0163690:CDS
AACAAAATGATGCAAATAAA+TGG 0.273261 1_4:-42009866 None:intergenic
CACCAATCCCTCACAAATTC+AGG 0.309817 1_4:+42008933 Msa0163690:CDS
ATGTTGAGAGAAGGAAAATA+AGG 0.314493 1_4:-42005955 None:intergenic
CCGTATTTCAAATAATGTTT+TGG 0.318011 1_4:-42008965 None:intergenic
ATGCATATGTTTATTACCTT+TGG 0.320686 1_4:+42010044 Msa0163690:three_prime_UTR
ATTGGTTCAATAGGTTGTTA+TGG 0.324824 1_4:-42009512 None:intergenic
TTCTCTTAAACCCTATGCTT+TGG 0.332248 1_4:-42009389 None:intergenic
AGAAGCTCTAGTACAAAATA+TGG 0.346043 1_4:-42009830 None:intergenic
CCAAAACATTATTTGAAATA+CGG 0.352051 1_4:+42008965 Msa0163690:CDS
CATCTTCTCATGTCTTTCGC+TGG 0.362737 1_4:+42006127 Msa0163690:CDS
CCTTATGGCATAACCTTTCC+CGG 0.367441 1_4:+42006740 Msa0163690:CDS
ATTGCTTATGTCTCTGTTGC+TGG 0.376749 1_4:+42009121 Msa0163690:CDS
TGGTCACAGATTGGTTCAAT+AGG 0.385138 1_4:-42009521 None:intergenic
CTGGTTCTTGTACTTCTCTC+AGG 0.405056 1_4:+42006146 Msa0163690:CDS
TCCCAAAAGAAACTTGATTC+CGG 0.406703 1_4:-42009741 None:intergenic
GTATTTGATACATTTACTTC+AGG 0.408426 1_4:+42009016 Msa0163690:CDS
TCCTTGATATTATGGCTTGA+TGG 0.415207 1_4:-42009624 None:intergenic
CCGGGAAAGGTTATGCCATA+AGG 0.417887 1_4:-42006740 None:intergenic
CATTCCATCCAGCTTGTGTT+GGG 0.422271 1_4:-42009773 None:intergenic
AGAAAATATGAAGGATTATG+AGG 0.423560 1_4:-42005910 None:intergenic
CGTTAAGTTATCCTTAAACT+CGG 0.440060 1_4:+42009924 Msa0163690:three_prime_UTR
GGTTTAATTTGGTCACAGAT+TGG 0.443486 1_4:-42009530 None:intergenic
CAAAACATTATTTGAAATAC+GGG 0.452808 1_4:+42008966 Msa0163690:CDS
TCTACCGTCGGAGAATCTTC+CGG 0.453026 1_4:-42006771 None:intergenic
GGTTCATGGAAAGAACCTTA+TGG 0.453293 1_4:+42006725 Msa0163690:CDS
TTCTTGAATGAGTTGGTTGA+AGG 0.465456 1_4:-42009065 None:intergenic
AATCATTACTTGGCCACAAA+TGG 0.467719 1_4:+42009154 Msa0163690:CDS
GGGTTTAAGAGAATTGTTGT+AGG 0.471266 1_4:+42009399 Msa0163690:CDS
GCATTCCATCCAGCTTGTGT+TGG 0.477061 1_4:-42009774 None:intergenic
AGAGAAACGTGGCCAAGACT+TGG 0.477614 1_4:-42005870 None:intergenic
GGAGACTCTTATGTTGATAC+CGG 0.484084 1_4:+42006680 Msa0163690:CDS
AATTCTCACATTCCAAGTCT+TGG 0.491733 1_4:+42005858 None:intergenic
AACTTTGCATATGGTGGTAC+AGG 0.496157 1_4:+42008992 Msa0163690:CDS
AAATGACTACAATCATTACT+TGG 0.497754 1_4:+42009144 Msa0163690:CDS
TGTAAAGGTGGTGTGATCCT+TGG 0.506168 1_4:-42009559 None:intergenic
CTGCTTACTCCCGCGCAACA+TGG 0.506554 1_4:-42009657 None:intergenic
TTGATTCATCTCCAAAGCAT+AGG 0.508012 1_4:+42009378 Msa0163690:CDS
TACGGGATGAACTTTGCATA+TGG 0.509580 1_4:+42008983 Msa0163690:CDS
TTCCTGAATTTGTGAGGGAT+TGG 0.510692 1_4:-42008935 None:intergenic
TGATTCATCTCCAAAGCATA+GGG 0.512776 1_4:+42009379 Msa0163690:CDS
TATAATGAGTTGGAGAAGAA+AGG 0.513061 1_4:+42009801 Msa0163690:CDS
ACAACTGAAGCAATGAAAGA+TGG 0.522350 1_4:-42009336 None:intergenic
CCTTGATATTATGGCTTGAT+GGG 0.522443 1_4:-42009623 None:intergenic
ACCTTTCCCGGAAAACCTGC+CGG 0.522743 1_4:+42006752 Msa0163690:CDS
GGATTGCACCCAACACAAGC+TGG 0.525339 1_4:+42009765 Msa0163690:CDS
GGCCACAAATGGCTCTCTCC+CGG 0.526173 1_4:+42009165 Msa0163690:CDS
GAACTCTGAAGAAAATATGA+AGG 0.529271 1_4:-42005919 None:intergenic
TGTTGAGAGAAGGAAAATAA+GGG 0.530179 1_4:-42005954 None:intergenic
CCCATCAAGCCATAATATCA+AGG 0.530604 1_4:+42009623 Msa0163690:CDS
TACCGGGAGAGAGCCATTTG+TGG 0.536907 1_4:-42009167 None:intergenic
CGTTTGAAGCCATGTTGCGC+GGG 0.546388 1_4:+42009648 Msa0163690:CDS
CAATGTTCCTGAATTTGTGA+GGG 0.549183 1_4:-42008940 None:intergenic
TAAATGTACTATTGCAACGT+TGG 0.549562 1_4:-42009473 None:intergenic
GTAAGCAGTCAGTATAATTG+TGG 0.561837 1_4:+42009672 Msa0163690:CDS
TAAGGTTCTTTCCATGAACC+AGG 0.564705 1_4:-42006722 None:intergenic
TGATATTATGGCTTGATGGG+TGG 0.568675 1_4:-42009620 None:intergenic
GCTTTGGAGATGAATCAAAT+CGG 0.568789 1_4:-42009373 None:intergenic
CCGTCGGAGAATCTTCCGGC+AGG 0.570452 1_4:-42006767 None:intergenic
CAAATTAAACCAAGAAGCCA+AGG 0.572389 1_4:+42009542 Msa0163690:CDS
TCCTTCAAAACTAGGCACCT+TGG 0.574769 1_4:+42006060 Msa0163690:five_prime_UTR
GAATGCTGTATATAATGAGT+TGG 0.576438 1_4:+42009791 Msa0163690:CDS
TCGTTTGAAGCCATGTTGCG+CGG 0.583492 1_4:+42009647 Msa0163690:CDS
TGCACCCAACACAAGCTGGA+TGG 0.589106 1_4:+42009769 Msa0163690:CDS
ATAACTATGATGTTGAGAGA+AGG 0.589710 1_4:-42005964 None:intergenic
ATTGTTAGGGCTGCAAGCTG+AGG 0.595633 1_4:+42006610 Msa0163690:intron
AAATACAATTGAATGAACAA+TGG 0.603442 1_4:-42005989 None:intergenic
AATGTCTAGAATTGTAAAGG+TGG 0.614447 1_4:-42009571 None:intergenic
GAGAGAAGGAAAATAAGGGT+TGG 0.615653 1_4:-42005950 None:intergenic
GTCAGTTAAAACTCTACCGT+CGG 0.618067 1_4:-42006783 None:intergenic
GAGGATTGAGCAGTGGTCTG+AGG 0.625641 1_4:-42009447 None:intergenic
GGGATGAACTTTGCATATGG+TGG 0.628835 1_4:+42008986 Msa0163690:CDS
GCTAAGAGATACATTGCCAA+AGG 0.633098 1_4:-42010060 None:intergenic
GTAGGTGCTTTACAACCACT+TGG 0.634865 1_4:+42009417 Msa0163690:CDS
ACTATTGCAACGTTGGAACG+AGG 0.664844 1_4:-42009466 None:intergenic
ACAATGTTCCTGAATTTGTG+AGG 0.671707 1_4:-42008941 None:intergenic
AATAGCTATGAAAATGACCA+AGG 0.674457 1_4:-42006077 None:intergenic
TTGGAACGAGGATTGAGCAG+TGG 0.684303 1_4:-42009454 None:intergenic
GCTTGATGGGTGGTTCAACA+CGG 0.696915 1_4:-42009610 None:intergenic
CCTGCCGGAAGATTCTCCGA+CGG 0.737578 1_4:+42006767 Msa0163690:CDS
GTCTGAGGAAGACATCCAAG+TGG 0.739269 1_4:-42009432 None:intergenic
GGTTGTTATGGAGAGCTACG+AGG 0.763965 1_4:-42009500 None:intergenic
ATAGTGAAAGGAGAGAAACG+TGG 0.805186 1_4:-42005881 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAAGAAAAATCAAT+GGG - chr1_4:42006546-42006565 None:intergenic 10.0%
!! TATTAATTAAGAAAAATCAA+TGG - chr1_4:42006547-42006566 None:intergenic 10.0%
!! ATATATAGAGAAATATAATA+CGG - chr1_4:42007028-42007047 None:intergenic 10.0%
!! ATTTAAAAATTATAAAAGAG+TGG + chr1_4:42007561-42007580 Msa0163690:intron 10.0%
!!! ATAGAAAACTATTTTAAAAT+GGG - chr1_4:42007614-42007633 None:intergenic 10.0%
!!! AATAGAAAACTATTTTAAAA+TGG - chr1_4:42007615-42007634 None:intergenic 10.0%
!!! ATTTTAAAATAGTTTTCTAT+TGG + chr1_4:42007614-42007633 Msa0163690:intron 10.0%
!! AGCATAAAATAAATTAATAA+GGG - chr1_4:42008641-42008660 None:intergenic 10.0%
!! TATAAAAATGTTAAATCATA+TGG + chr1_4:42008775-42008794 Msa0163690:intron 10.0%
!! CTAAAATAATATTAATTCTA+AGG + chr1_4:42008803-42008822 Msa0163690:intron 10.0%
!! AATAAATGTAATTATATAAG+AGG - chr1_4:42008858-42008877 None:intergenic 10.0%
!! ATTAAAATGAATTAATTTAC+CGG - chr1_4:42009187-42009206 None:intergenic 10.0%
!! AAATAATGTTAAGAAATATT+TGG + chr1_4:42009707-42009726 Msa0163690:CDS 10.0%
!! TTCAATATACTTTAATAGAA+TGG + chr1_4:42006329-42006348 Msa0163690:intron 15.0%
!!! ATATTATAATTTTTGAGATG+TGG + chr1_4:42007044-42007063 Msa0163690:intron 15.0%
!!! TATTATAATTTTTGAGATGT+GGG + chr1_4:42007045-42007064 Msa0163690:intron 15.0%
!!! TCCATGATATATTTTATATT+TGG + chr1_4:42007114-42007133 Msa0163690:intron 15.0%
!! ACCAAATATAAAATATATCA+TGG - chr1_4:42007118-42007137 None:intergenic 15.0%
!! AAAATTGAATATACGAAAAT+AGG - chr1_4:42007191-42007210 None:intergenic 15.0%
!! TTTCTTAGTATTTAGAAAAT+AGG + chr1_4:42007767-42007786 Msa0163690:intron 15.0%
!!! ATATTTTATCAGTAGTTTAT+TGG + chr1_4:42008030-42008049 Msa0163690:intron 15.0%
!! TAAAAAAATATGACAAACTA+TGG - chr1_4:42008575-42008594 None:intergenic 15.0%
!! GAGCATAAAATAAATTAATA+AGG - chr1_4:42008642-42008661 None:intergenic 15.0%
!! TTAAAATGAATTAATTTACC+GGG - chr1_4:42009186-42009205 None:intergenic 15.0%
!!! AATTCTATTTTTGTTAATAG+AGG - chr1_4:42009234-42009253 None:intergenic 15.0%
!!! TTTTGTTAAAATTCATGTAT+AGG - chr1_4:42009290-42009309 None:intergenic 15.0%
!!! AATAATTTCATTTAATTTGC+AGG + chr1_4:42009308-42009327 Msa0163690:intron 15.0%
!!! ATAATTTCATTTAATTTGCA+GGG + chr1_4:42009309-42009328 Msa0163690:intron 15.0%
!! AAATACAATTGAATGAACAA+TGG - chr1_4:42005992-42006011 None:intergenic 20.0%
!!! CACAATACAATATAGTATTT+TGG + chr1_4:42006424-42006443 Msa0163690:intron 20.0%
!!! ATTATAATTTTTGAGATGTG+GGG + chr1_4:42007046-42007065 Msa0163690:intron 20.0%
!!! ACTTCTAAAAATCTATTTAG+TGG - chr1_4:42007504-42007523 None:intergenic 20.0%
!! ACTCTTTAACATAGAAAATT+AGG - chr1_4:42007891-42007910 None:intergenic 20.0%
!!! ATCAACCATAGTTTATTTTT+AGG + chr1_4:42008540-42008559 Msa0163690:intron 20.0%
!!! TCAACCATAGTTTATTTTTA+GGG + chr1_4:42008541-42008560 Msa0163690:intron 20.0%
!! ATAATAACGTTACATTTATG+TGG + chr1_4:42008884-42008903 Msa0163690:intron 20.0%
!!! CCAAAACATTATTTGAAATA+CGG + chr1_4:42008965-42008984 Msa0163690:CDS 20.0%
!!! CAAAACATTATTTGAAATAC+GGG + chr1_4:42008966-42008985 Msa0163690:CDS 20.0%
!!! TTAATTCATTTTAATCTGAG+CGG + chr1_4:42009192-42009211 Msa0163690:intron 20.0%
!!! AAAAATGTCTAGAATTGTAA+AGG - chr1_4:42009577-42009596 None:intergenic 20.0%
!!! ATATTTGGTTTGTAAAAATC+CGG + chr1_4:42009722-42009741 Msa0163690:CDS 20.0%
!! AACAAAATGATGCAAATAAA+TGG - chr1_4:42009869-42009888 None:intergenic 20.0%
!!! ATTTTGTTTCTTGTCTAATA+AGG + chr1_4:42009881-42009900 Msa0163690:three_prime_UTR 20.0%
!!! ATGAGGTTTTATATAGTGAA+AGG - chr1_4:42005896-42005915 None:intergenic 25.0%
! AGAAAATATGAAGGATTATG+AGG - chr1_4:42005913-42005932 None:intergenic 25.0%
!!! TAGTTTTGAAGGAAGTTAAA+AGG - chr1_4:42006053-42006072 None:intergenic 25.0%
!!! TTTTAACTTCCTTCAAAACT+AGG + chr1_4:42006052-42006071 Msa0163690:five_prime_UTR 25.0%
!! ATTTTCATAGCTATTCATCA+TGG + chr1_4:42006085-42006104 Msa0163690:exon 25.0%
!!! CATGTTTGTTTTTGAGATAT+AGG - chr1_4:42006246-42006265 None:intergenic 25.0%
! GGAACAAGTTAAAATAAAAG+GGG - chr1_4:42006525-42006544 None:intergenic 25.0%
! GGGAACAAGTTAAAATAAAA+GGG - chr1_4:42006526-42006545 None:intergenic 25.0%
! TGGGAACAAGTTAAAATAAA+AGG - chr1_4:42006527-42006546 None:intergenic 25.0%
!! AAAACGAACAATTCTTTTGT+AGG - chr1_4:42006659-42006678 None:intergenic 25.0%
!! ACAAAAGAATTGTTCGTTTT+TGG + chr1_4:42006659-42006678 Msa0163690:CDS 25.0%
! ATGCTATTAACATAATCAAC+TGG + chr1_4:42006844-42006863 Msa0163690:intron 25.0%
!! TTTCTTTCTTTCTCTTTTCT+TGG + chr1_4:42006890-42006909 Msa0163690:intron 25.0%
!! GATTACAAAGCATTCTTAAT+CGG + chr1_4:42007326-42007345 Msa0163690:intron 25.0%
! TTATCTGATTCACATATTGA+AGG - chr1_4:42007393-42007412 None:intergenic 25.0%
!!! TTTTAGAAGTGTTGTATTAG+AGG + chr1_4:42007514-42007533 Msa0163690:intron 25.0%
!! AAATAGTTTTCTATTGGAGA+TGG + chr1_4:42007620-42007639 Msa0163690:intron 25.0%
! CTTAGTATTTAGAAAATAGG+TGG + chr1_4:42007770-42007789 Msa0163690:intron 25.0%
! CAACTAAAAAAAATCGATAG+AGG + chr1_4:42007977-42007996 Msa0163690:intron 25.0%
!!! TATTGCTTTGTTTTTCTTTG+AGG + chr1_4:42008098-42008117 Msa0163690:intron 25.0%
!! AAGTCTTTTGTGTACAATTT+TGG + chr1_4:42008126-42008145 Msa0163690:intron 25.0%
! AATTCACAGAGAATTAATTC+AGG - chr1_4:42008312-42008331 None:intergenic 25.0%
!!! AAGCTATGTGTCATTTTTAT+TGG + chr1_4:42008476-42008495 Msa0163690:intron 25.0%
!!! CAACCATAGTTTATTTTTAG+GGG + chr1_4:42008542-42008561 Msa0163690:intron 25.0%
! TAACCCCTAAAAATAAACTA+TGG - chr1_4:42008548-42008567 None:intergenic 25.0%
! AAATTAATAAGGGTAGTAGT+TGG - chr1_4:42008631-42008650 None:intergenic 25.0%
!! CCGTATTTCAAATAATGTTT+TGG - chr1_4:42008968-42008987 None:intergenic 25.0%
! GTATTTGATACATTTACTTC+AGG + chr1_4:42009016-42009035 Msa0163690:CDS 25.0%
! AAATGACTACAATCATTACT+TGG + chr1_4:42009144-42009163 Msa0163690:CDS 25.0%
!!! TAATTCATTTTAATCTGAGC+GGG + chr1_4:42009193-42009212 Msa0163690:intron 25.0%
!!! AAAGAAAATTTTGACTGAGA+AGG - chr1_4:42010001-42010020 None:intergenic 25.0%
! ATGCATATGTTTATTACCTT+TGG + chr1_4:42010044-42010063 Msa0163690:three_prime_UTR 25.0%
! GAACTCTGAAGAAAATATGA+AGG - chr1_4:42005922-42005941 None:intergenic 30.0%
! TCATATTTTCTTCAGAGTTC+TGG + chr1_4:42005922-42005941 Msa0163690:five_prime_UTR 30.0%
TGTTGAGAGAAGGAAAATAA+GGG - chr1_4:42005957-42005976 None:intergenic 30.0%
ATGTTGAGAGAAGGAAAATA+AGG - chr1_4:42005958-42005977 None:intergenic 30.0%
ATAACTATGATGTTGAGAGA+AGG - chr1_4:42005967-42005986 None:intergenic 30.0%
AATAGCTATGAAAATGACCA+AGG - chr1_4:42006080-42006099 None:intergenic 30.0%
GAAAATCATACACATACACA+TGG - chr1_4:42006303-42006322 None:intergenic 30.0%
!!! ATAGTATTTTGGTGTGAATC+AGG + chr1_4:42006435-42006454 Msa0163690:intron 30.0%
!! ACATCTTGTTGTTCATTGTT+AGG + chr1_4:42006596-42006615 Msa0163690:intron 30.0%
!! CATCTTGTTGTTCATTGTTA+GGG + chr1_4:42006597-42006616 Msa0163690:intron 30.0%
! CTTTTGTAGGATGATATTTG+AGG - chr1_4:42006646-42006665 None:intergenic 30.0%
!!! TGAACCAGGTTTACTTTTTT+GGG - chr1_4:42006711-42006730 None:intergenic 30.0%
!!! ATGAACCAGGTTTACTTTTT+TGG - chr1_4:42006712-42006731 None:intergenic 30.0%
AAAAAAGTAAACCTGGTTCA+TGG + chr1_4:42006711-42006730 Msa0163690:CDS 30.0%
!!! AGAGTTTTAACTGACTTCAT+TGG + chr1_4:42006791-42006810 Msa0163690:CDS 30.0%
TAATAGCATTAGAGAGAGAT+GGG - chr1_4:42006833-42006852 None:intergenic 30.0%
TTAATAGCATTAGAGAGAGA+TGG - chr1_4:42006834-42006853 None:intergenic 30.0%
TAGAGGATTTGATGCTTATT+AGG + chr1_4:42007531-42007550 Msa0163690:intron 30.0%
ATGTGATCAGATTCAAAACT+AGG - chr1_4:42008188-42008207 None:intergenic 30.0%
!!! TAGTTTTGAATCTGATCACA+TGG + chr1_4:42008187-42008206 Msa0163690:intron 30.0%
!!! ATGCTTTTGCTTCTAGTTTA+CGG - chr1_4:42008720-42008739 None:intergenic 30.0%
!! TCGATTTGAGTTGTCATATT+TGG - chr1_4:42009043-42009062 None:intergenic 30.0%
! AGACATTTTCTTGAATGAGT+TGG - chr1_4:42009075-42009094 None:intergenic 30.0%
TAAATGTACTATTGCAACGT+TGG - chr1_4:42009476-42009495 None:intergenic 30.0%
! ATTGGTTCAATAGGTTGTTA+TGG - chr1_4:42009515-42009534 None:intergenic 30.0%
! AATGTCTAGAATTGTAAAGG+TGG - chr1_4:42009574-42009593 None:intergenic 30.0%
TCAAACGATCCTTGATATTA+TGG - chr1_4:42009635-42009654 None:intergenic 30.0%
GAATGCTGTATATAATGAGT+TGG + chr1_4:42009791-42009810 Msa0163690:CDS 30.0%
! TATAATGAGTTGGAGAAGAA+AGG + chr1_4:42009801-42009820 Msa0163690:CDS 30.0%
! AGAAGCTCTAGTACAAAATA+TGG - chr1_4:42009833-42009852 None:intergenic 30.0%
CGTTAAGTTATCCTTAAACT+CGG + chr1_4:42009924-42009943 Msa0163690:three_prime_UTR 30.0%
ATAAAAGGGGAATGTATTGC+AGG - chr1_4:42006512-42006531 None:intergenic 35.0%
!!! TTTACTTTTTTGGGTGTTGC+CGG - chr1_4:42006702-42006721 None:intergenic 35.0%
AACACCCAAAAAAGTAAACC+TGG + chr1_4:42006704-42006723 Msa0163690:CDS 35.0%
AAAGCACAAGAAAGGTAAAG+TGG - chr1_4:42007092-42007111 None:intergenic 35.0%
! CATGGATAAAAGCACAAGAA+AGG - chr1_4:42007100-42007119 None:intergenic 35.0%
TGACCTGTGAAAATGAATGA+GGG - chr1_4:42007662-42007681 None:intergenic 35.0%
ATGACCTGTGAAAATGAATG+AGG - chr1_4:42007663-42007682 None:intergenic 35.0%
! AGATAAACGTTAAGAGCATG+TGG - chr1_4:42008359-42008378 None:intergenic 35.0%
AAAACGTGATTGAGAGTTTG+AGG + chr1_4:42008415-42008434 Msa0163690:intron 35.0%
AAACGTGATTGAGAGTTTGA+GGG + chr1_4:42008416-42008435 Msa0163690:intron 35.0%
!! AACTAGAAGCAAAAGCATTG+TGG + chr1_4:42008722-42008741 Msa0163690:intron 35.0%
CAATGTTCCTGAATTTGTGA+GGG - chr1_4:42008943-42008962 None:intergenic 35.0%
ACAATGTTCCTGAATTTGTG+AGG - chr1_4:42008944-42008963 None:intergenic 35.0%
!! TTCTTGAATGAGTTGGTTGA+AGG - chr1_4:42009068-42009087 None:intergenic 35.0%
AATCATTACTTGGCCACAAA+TGG + chr1_4:42009154-42009173 Msa0163690:CDS 35.0%
ACAACTGAAGCAATGAAAGA+TGG - chr1_4:42009339-42009358 None:intergenic 35.0%
!! GCTTTGGAGATGAATCAAAT+CGG - chr1_4:42009376-42009395 None:intergenic 35.0%
TTGATTCATCTCCAAAGCAT+AGG + chr1_4:42009378-42009397 Msa0163690:CDS 35.0%
TGATTCATCTCCAAAGCATA+GGG + chr1_4:42009379-42009398 Msa0163690:CDS 35.0%
TTCTCTTAAACCCTATGCTT+TGG - chr1_4:42009392-42009411 None:intergenic 35.0%
GGGTTTAAGAGAATTGTTGT+AGG + chr1_4:42009399-42009418 Msa0163690:CDS 35.0%
!! GGTTTAATTTGGTCACAGAT+TGG - chr1_4:42009533-42009552 None:intergenic 35.0%
CTTGGCTTCTTGGTTTAATT+TGG - chr1_4:42009544-42009563 None:intergenic 35.0%
CAAATTAAACCAAGAAGCCA+AGG + chr1_4:42009542-42009561 Msa0163690:CDS 35.0%
CCTTGATATTATGGCTTGAT+GGG - chr1_4:42009626-42009645 None:intergenic 35.0%
TCCTTGATATTATGGCTTGA+TGG - chr1_4:42009627-42009646 None:intergenic 35.0%
GTAAGCAGTCAGTATAATTG+TGG + chr1_4:42009672-42009691 Msa0163690:CDS 35.0%
! ATCCGGAATCAAGTTTCTTT+TGG + chr1_4:42009739-42009758 Msa0163690:CDS 35.0%
! TCCGGAATCAAGTTTCTTTT+GGG + chr1_4:42009740-42009759 Msa0163690:CDS 35.0%
TCCCAAAAGAAACTTGATTC+CGG - chr1_4:42009744-42009763 None:intergenic 35.0%
!! GAATCAAGTTTCTTTTGGGA+TGG + chr1_4:42009744-42009763 Msa0163690:CDS 35.0%
ATACAAAGAAGCCGAGTTTA+AGG - chr1_4:42009938-42009957 None:intergenic 35.0%
ATAGTGAAAGGAGAGAAACG+TGG - chr1_4:42005884-42005903 None:intergenic 40.0%
GAGAGAAGGAAAATAAGGGT+TGG - chr1_4:42005953-42005972 None:intergenic 40.0%
GGAGACTCTTATGTTGATAC+CGG + chr1_4:42006680-42006699 Msa0163690:CDS 40.0%
TAAGGTTCTTTCCATGAACC+AGG - chr1_4:42006725-42006744 None:intergenic 40.0%
GGTTCATGGAAAGAACCTTA+TGG + chr1_4:42006725-42006744 Msa0163690:CDS 40.0%
GTCAGTTAAAACTCTACCGT+CGG - chr1_4:42006786-42006805 None:intergenic 40.0%
TAGAGAGAGATGGGTGAAAT+AGG - chr1_4:42006824-42006843 None:intergenic 40.0%
! TGTGGGGTTTATTTCTTCGT+TGG + chr1_4:42007062-42007081 Msa0163690:intron 40.0%
! ACAATGAGGCAGCATTTTAC+AGG - chr1_4:42007153-42007172 None:intergenic 40.0%
TAAAATGCTGCCTCATTGTG+TGG + chr1_4:42007154-42007173 Msa0163690:intron 40.0%
AACACAATCACCACACAATG+AGG - chr1_4:42007167-42007186 None:intergenic 40.0%
! ACTCCCTCATTCATTTTCAC+AGG + chr1_4:42007656-42007675 Msa0163690:intron 40.0%
! CATTTTCACAGGTCATTCGT+TGG + chr1_4:42007667-42007686 Msa0163690:intron 40.0%
TCTCTGTGAATTCCTCACTT+TGG + chr1_4:42008320-42008339 Msa0163690:intron 40.0%
TAAGCATATAGGCCAAAGTG+AGG - chr1_4:42008335-42008354 None:intergenic 40.0%
GAGCATGTGGTTAAGCATAT+AGG - chr1_4:42008346-42008365 None:intergenic 40.0%
TGATTGAGAGTTTGAGGGAT+TGG + chr1_4:42008421-42008440 Msa0163690:intron 40.0%
TTCCTGAATTTGTGAGGGAT+TGG - chr1_4:42008938-42008957 None:intergenic 40.0%
TACGGGATGAACTTTGCATA+TGG + chr1_4:42008983-42009002 Msa0163690:CDS 40.0%
AACTTTGCATATGGTGGTAC+AGG + chr1_4:42008992-42009011 Msa0163690:CDS 40.0%
ATTGCTTATGTCTCTGTTGC+TGG + chr1_4:42009121-42009140 Msa0163690:CDS 40.0%
! TGGTCACAGATTGGTTCAAT+AGG - chr1_4:42009524-42009543 None:intergenic 40.0%
TGATATTATGGCTTGATGGG+TGG - chr1_4:42009623-42009642 None:intergenic 40.0%
CCCATCAAGCCATAATATCA+AGG + chr1_4:42009623-42009642 Msa0163690:CDS 40.0%
TCCTTCAAAACTAGGCACCT+TGG + chr1_4:42006060-42006079 Msa0163690:five_prime_UTR 45.0%
!!! ACCAAGGTGCCTAGTTTTGA+AGG - chr1_4:42006064-42006083 None:intergenic 45.0%
CATCTTCTCATGTCTTTCGC+TGG + chr1_4:42006127-42006146 Msa0163690:CDS 45.0%
! CTGGTTCTTGTACTTCTCTC+AGG + chr1_4:42006146-42006165 Msa0163690:CDS 45.0%
CCTTATGGCATAACCTTTCC+CGG + chr1_4:42006740-42006759 Msa0163690:CDS 45.0%
ATGCATTGTCCCTATCCTCA+CGG + chr1_4:42008069-42008088 Msa0163690:intron 45.0%
ATAGCAATCCCGTGAGGATA+GGG - chr1_4:42008081-42008100 None:intergenic 45.0%
AATAGCAATCCCGTGAGGAT+AGG - chr1_4:42008082-42008101 None:intergenic 45.0%
AAAGCAATAGCAATCCCGTG+AGG - chr1_4:42008087-42008106 None:intergenic 45.0%
CACCAATCCCTCACAAATTC+AGG + chr1_4:42008933-42008952 Msa0163690:CDS 45.0%
GGGATGAACTTTGCATATGG+TGG + chr1_4:42008986-42009005 Msa0163690:CDS 45.0%
GTAGGTGCTTTACAACCACT+TGG + chr1_4:42009417-42009436 Msa0163690:CDS 45.0%
ACTATTGCAACGTTGGAACG+AGG - chr1_4:42009469-42009488 None:intergenic 45.0%
TGTAAAGGTGGTGTGATCCT+TGG - chr1_4:42009562-42009581 None:intergenic 45.0%
CATTCCATCCAGCTTGTGTT+GGG - chr1_4:42009776-42009795 None:intergenic 45.0%
AGAGAAACGTGGCCAAGACT+TGG - chr1_4:42005873-42005892 None:intergenic 50.0%
ATTGTTAGGGCTGCAAGCTG+AGG + chr1_4:42006610-42006629 Msa0163690:intron 50.0%
CCGGGAAAGGTTATGCCATA+AGG - chr1_4:42006743-42006762 None:intergenic 50.0%
! AATCTTCCGGCAGGTTTTCC+GGG - chr1_4:42006761-42006780 None:intergenic 50.0%
! GAATCTTCCGGCAGGTTTTC+CGG - chr1_4:42006762-42006781 None:intergenic 50.0%
TCTACCGTCGGAGAATCTTC+CGG - chr1_4:42006774-42006793 None:intergenic 50.0%
TGCATTGTCCCTATCCTCAC+GGG + chr1_4:42008070-42008089 Msa0163690:intron 50.0%
GTCTGAGGAAGACATCCAAG+TGG - chr1_4:42009435-42009454 None:intergenic 50.0%
TTGGAACGAGGATTGAGCAG+TGG - chr1_4:42009457-42009476 None:intergenic 50.0%
GGTTGTTATGGAGAGCTACG+AGG - chr1_4:42009503-42009522 None:intergenic 50.0%
TGGTGTGATCCTTGGCTTCT+TGG - chr1_4:42009554-42009573 None:intergenic 50.0%
! GCTTGATGGGTGGTTCAACA+CGG - chr1_4:42009613-42009632 None:intergenic 50.0%
! TCGTTTGAAGCCATGTTGCG+CGG + chr1_4:42009647-42009666 Msa0163690:CDS 50.0%
GCATTCCATCCAGCTTGTGT+TGG - chr1_4:42009777-42009796 None:intergenic 50.0%
ACCTTTCCCGGAAAACCTGC+CGG + chr1_4:42006752-42006771 Msa0163690:CDS 55.0%
TACCGGGAGAGAGCCATTTG+TGG - chr1_4:42009170-42009189 None:intergenic 55.0%
GAGGATTGAGCAGTGGTCTG+AGG - chr1_4:42009450-42009469 None:intergenic 55.0%
! CGTTTGAAGCCATGTTGCGC+GGG + chr1_4:42009648-42009667 Msa0163690:CDS 55.0%
GGATTGCACCCAACACAAGC+TGG + chr1_4:42009765-42009784 Msa0163690:CDS 55.0%
TGCACCCAACACAAGCTGGA+TGG + chr1_4:42009769-42009788 Msa0163690:CDS 55.0%
! TCCGGCAGGTTTTCCGGGAA+AGG - chr1_4:42006756-42006775 None:intergenic 60.0%
CCTGCCGGAAGATTCTCCGA+CGG + chr1_4:42006767-42006786 Msa0163690:CDS 60.0%
GGCCACAAATGGCTCTCTCC+CGG + chr1_4:42009165-42009184 Msa0163690:CDS 60.0%
CTGCTTACTCCCGCGCAACA+TGG - chr1_4:42009660-42009679 None:intergenic 60.0%
CCGTCGGAGAATCTTCCGGC+AGG - chr1_4:42006770-42006789 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 42005863 42010071 42005863 ID=Msa0163690;Name=Msa0163690
chr1_4 mRNA 42005863 42010071 42005863 ID=Msa0163690-mRNA-1;Parent=Msa0163690;Name=Msa0163690-mRNA-1;_AED=0.02;_eAED=0.02;_QI=241|1|1|1|1|1|4|226|349
chr1_4 exon 42005863 42006167 42005863 ID=Msa0163690-mRNA-1:exon:12147;Parent=Msa0163690-mRNA-1
chr1_4 exon 42006618 42006812 42006618 ID=Msa0163690-mRNA-1:exon:12148;Parent=Msa0163690-mRNA-1
chr1_4 exon 42008912 42009186 42008912 ID=Msa0163690-mRNA-1:exon:12149;Parent=Msa0163690-mRNA-1
chr1_4 exon 42009330 42010071 42009330 ID=Msa0163690-mRNA-1:exon:12150;Parent=Msa0163690-mRNA-1
chr1_4 five_prime_UTR 42005863 42006103 42005863 ID=Msa0163690-mRNA-1:five_prime_utr;Parent=Msa0163690-mRNA-1
chr1_4 CDS 42006104 42006167 42006104 ID=Msa0163690-mRNA-1:cds;Parent=Msa0163690-mRNA-1
chr1_4 CDS 42006618 42006812 42006618 ID=Msa0163690-mRNA-1:cds;Parent=Msa0163690-mRNA-1
chr1_4 CDS 42008912 42009186 42008912 ID=Msa0163690-mRNA-1:cds;Parent=Msa0163690-mRNA-1
chr1_4 CDS 42009330 42009845 42009330 ID=Msa0163690-mRNA-1:cds;Parent=Msa0163690-mRNA-1
chr1_4 three_prime_UTR 42009846 42010071 42009846 ID=Msa0163690-mRNA-1:three_prime_utr;Parent=Msa0163690-mRNA-1
Gene Sequence

>Msa0163690

ATGGACTCGTATAAGCAACTTTTCATCTTCTCATGTCTTTCGCTGGTTCTTGTACTTCTCTCAGGGCTGCAAGCTGAGGCAAGTCGTCACCTCAAATATCATCCTACAAAAGAATTGTTCGTTTTTGGAGACTCTTATGTTGATACCGGCAACACCCAAAAAAGTAAACCTGGTTCATGGAAAGAACCTTATGGCATAACCTTTCCCGGAAAACCTGCCGGAAGATTCTCCGACGGTAGAGTTTTAACTGACTTCATTGCAAAGTATTTGAGATTGAGATCACCAATCCCTCACAAATTCAGGAACATTGTGCCAAAACATTATTTGAAATACGGGATGAACTTTGCATATGGTGGTACAGGTGTATTTGATACATTTACTTCAGGACCAAATATGACAACTCAAATCGATTCCTTCAACCAACTCATTCAAGAAAATGTCTATACTCATTCAGATCTCAACAAAGCTATTGCTTATGTCTCTGTTGCTGGAAATGACTACAATCATTACTTGGCCACAAATGGCTCTCTCCCGGGTTTTCCATCTTTCATTGCTTCAGTTGTTAAACAAACAACGACCGATTTGATTCATCTCCAAAGCATAGGGTTTAAGAGAATTGTTGTAGGTGCTTTACAACCACTTGGATGTCTTCCTCAGACCACTGCTCAATCCTCGTTCCAACGTTGCAATAGTACATTTAACGACCTCGTAGCTCTCCATAACAACCTATTGAACCAATCTGTGACCAAATTAAACCAAGAAGCCAAGGATCACACCACCTTTACAATTCTAGACATTTTTGACAGTTTCGCATCCGTGTTGAACCACCCATCAAGCCATAATATCAAGGATCGTTTGAAGCCATGTTGCGCGGGAGTAAGCAGTCAGTATAATTGTGGAAGTGTAGATGAAAATAATGTTAAGAAATATTTGGTTTGTAAAAATCCGGAATCAAGTTTCTTTTGGGATGGATTGCACCCAACACAAGCTGGATGGAATGCTGTATATAATGAGTTGGAGAAGAAAGGTCTTCACCATATTTTGTACTAG
Protein sequence

>Msa0163690

MDSYKQLFIFSCLSLVLVLLSGLQAEASRHLKYHPTKELFVFGDSYVDTGNTQKSKPGSWKEPYGITFPGKPAGRFSDGRVLTDFIAKYLRLRSPIPHKFRNIVPKHYLKYGMNFAYGGTGVFDTFTSGPNMTTQIDSFNQLIQENVYTHSDLNKAIAYVSVAGNDYNHYLATNGSLPGFPSFIASVVKQTTTDLIHLQSIGFKRIVVGALQPLGCLPQTTAQSSFQRCNSTFNDLVALHNNLLNQSVTKLNQEAKDHTTFTILDIFDSFASVLNHPSSHNIKDRLKPCCAGVSSQYNCGSVDENNVKKYLVCKNPESSFFWDGLHPTQAGWNAVYNELEKKGLHHILY*