Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512480 | RHN69041.1 | 98.830 | 513 | 2 | 3 | 1 | 511 | 1 | 511 | 0.0 | 1033 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512480 | sp|P52417|GLGS2_VICFA | 95.703 | 512 | 18 | 2 | 4 | 511 | 1 | 512 | 0.0 | 956 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512480 | A0A396IWK0 | 98.830 | 513 | 2 | 3 | 1 | 511 | 1 | 511 | 0.0 | 1033 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0171780 | Msa0512480 | 0.813287 | 2.763086e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512480 | MtrunA17_Chr3g0120471 | 98.830 | 513 | 2 | 3 | 1 | 511 | 1 | 511 | 0.0 | 1033 |
| Msa0512480 | MtrunA17_Chr5g0447341 | 89.515 | 515 | 50 | 2 | 1 | 511 | 1 | 515 | 0.0 | 906 |
| Msa0512480 | MtrunA17_Chr4g0074531 | 53.968 | 504 | 205 | 9 | 28 | 511 | 25 | 521 | 0.0 | 536 |
| Msa0512480 | MtrunA17_Chr7g0271011 | 56.823 | 447 | 173 | 10 | 82 | 511 | 93 | 536 | 1.11e-180 | 518 |
| Msa0512480 | MtrunA17_Chr3g0141761 | 55.388 | 464 | 179 | 9 | 58 | 511 | 85 | 530 | 1.07e-179 | 515 |
| Msa0512480 | MtrunA17_Chr4g0035171 | 50.415 | 482 | 220 | 9 | 46 | 511 | 50 | 528 | 7.15e-167 | 482 |
| Msa0512480 | MtrunA17_Chr0c30g0494071 | 45.598 | 443 | 174 | 13 | 83 | 511 | 26 | 415 | 7.14e-117 | 350 |
| Msa0512480 | MtrunA17_Chr3g0144741 | 60.241 | 249 | 93 | 4 | 82 | 325 | 84 | 331 | 6.81e-95 | 292 |
| Msa0512480 | MtrunA17_Chr3g0144731 | 50.000 | 152 | 73 | 1 | 363 | 511 | 10 | 161 | 5.88e-47 | 160 |
| Msa0512480 | MtrunA17_Chr4g0077071 | 88.750 | 80 | 6 | 1 | 346 | 422 | 2 | 81 | 2.20e-42 | 145 |
| Msa0512480 | MtrunA17_Chr6g0454161 | 87.273 | 55 | 7 | 0 | 415 | 469 | 121 | 175 | 2.35e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512480 | AT5G48300.1 | 86.731 | 520 | 60 | 5 | 1 | 511 | 1 | 520 | 0.0 | 887 |
| Msa0512480 | AT5G19220.1 | 52.713 | 516 | 226 | 9 | 10 | 511 | 11 | 522 | 0.0 | 542 |
| Msa0512480 | AT1G27680.1 | 57.306 | 438 | 177 | 5 | 82 | 511 | 83 | 518 | 0.0 | 525 |
| Msa0512480 | AT4G39210.2 | 49.275 | 483 | 223 | 8 | 46 | 511 | 44 | 521 | 1.83e-166 | 481 |
| Msa0512480 | AT4G39210.1 | 49.275 | 483 | 223 | 8 | 46 | 511 | 44 | 521 | 1.83e-166 | 481 |
| Msa0512480 | AT2G21590.2 | 47.438 | 527 | 241 | 10 | 15 | 511 | 3 | 523 | 8.82e-164 | 474 |
| Msa0512480 | AT2G21590.3 | 47.438 | 527 | 241 | 10 | 15 | 511 | 3 | 523 | 8.82e-164 | 474 |
| Msa0512480 | AT2G21590.5 | 47.438 | 527 | 241 | 10 | 15 | 511 | 3 | 523 | 8.82e-164 | 474 |
| Msa0512480 | AT2G21590.4 | 47.438 | 527 | 241 | 10 | 15 | 511 | 3 | 523 | 8.82e-164 | 474 |
| Msa0512480 | AT2G21590.7 | 47.438 | 527 | 241 | 10 | 15 | 511 | 3 | 523 | 8.82e-164 | 474 |
| Msa0512480 | AT2G21590.1 | 47.438 | 527 | 241 | 10 | 15 | 511 | 3 | 523 | 8.82e-164 | 474 |
| Msa0512480 | AT2G21590.6 | 47.438 | 527 | 241 | 10 | 15 | 511 | 3 | 523 | 8.82e-164 | 474 |
| Msa0512480 | AT1G05610.1 | 45.708 | 466 | 231 | 7 | 51 | 511 | 28 | 476 | 1.58e-141 | 416 |
| Msa0512480 | AT1G05610.2 | 45.940 | 468 | 233 | 7 | 51 | 511 | 28 | 482 | 2.63e-141 | 416 |
Find 133 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGTTGATACTACTATTT+TGG | 0.118247 | 3_4:-62227134 | Msa0512480:intron |
| ATGCGGTGAGGCAATATTTA+TGG | 0.227198 | 3_4:-62227480 | Msa0512480:CDS |
| TAATGTGATTTGCTTCTTCT+AGG | 0.233733 | 3_4:-62225403 | Msa0512480:three_prime_UTR |
| TATTGAGGACACATTGTTAA+TGG | 0.236148 | 3_4:-62226309 | Msa0512480:CDS |
| CTTATTTATACGATGGATAC+TGG | 0.239223 | 3_4:-62226832 | Msa0512480:CDS |
| GCTTTCAACTGTTCTCCTTT+TGG | 0.240994 | 3_4:+62227250 | None:intergenic |
| AATGCCTTATATTGCTAGTA+TGG | 0.245338 | 3_4:-62227086 | Msa0512480:CDS |
| TTTCTGGTGCACGTTATATT+TGG | 0.248459 | 3_4:-62225619 | Msa0512480:three_prime_UTR |
| CTGTTTAGGCAGTTGCTAAC+AGG | 0.290907 | 3_4:+62227779 | None:intergenic |
| TTTCGAGGAGCACAATGTTT+TGG | 0.304906 | 3_4:-62227455 | Msa0512480:CDS |
| TTGGAATACTTGGTTCTTGC+TGG | 0.304974 | 3_4:-62227436 | Msa0512480:CDS |
| GATATCACTGACAGTGTTAT+TGG | 0.317250 | 3_4:-62226561 | Msa0512480:CDS |
| CACCTTCCAGCAGTGAAAAT+AGG | 0.320877 | 3_4:+62225672 | None:intergenic |
| TTCCTGGTGCAAACGACTTC+GGG | 0.322270 | 3_4:-62227012 | Msa0512480:CDS |
| CTAATTACCTGGAACCAGTT+TGG | 0.343923 | 3_4:+62227611 | None:intergenic |
| ATTGAGGACACATTGTTAAT+GGG | 0.348660 | 3_4:-62226308 | Msa0512480:CDS |
| ATTCCTGGTGCAACCGAACT+TGG | 0.354432 | 3_4:-62226980 | Msa0512480:CDS |
| ACCTTCCAGCAGTGAAAATA+GGG | 0.355676 | 3_4:+62225673 | None:intergenic |
| TGAGAATCCAAACTGGTTCC+AGG | 0.364521 | 3_4:-62227618 | Msa0512480:intron |
| ATTGACAAGAATGCTAGAAT+TGG | 0.372887 | 3_4:-62226080 | Msa0512480:CDS |
| TTTGCCCGCTTCTTGGTCAA+TGG | 0.378602 | 3_4:+62227845 | None:intergenic |
| CTGCTCCGCGACAAGTTTCC+TGG | 0.384999 | 3_4:-62227028 | Msa0512480:CDS |
| GGCAGTGTTCCGATTGGTAT+TGG | 0.386912 | 3_4:-62226131 | Msa0512480:CDS |
| TCTTTGATATGTTACTGTTT+AGG | 0.387072 | 3_4:+62227765 | None:intergenic |
| GCCTCGAAAAGCCATCTATA+TGG | 0.393931 | 3_4:-62229049 | Msa0512480:exon |
| ATACCCATACTAGCAATATA+AGG | 0.403964 | 3_4:+62227082 | None:intergenic |
| GCAAGAATTCTCATATCAAA+AGG | 0.408139 | 3_4:-62226109 | Msa0512480:CDS |
| TCAATTCAGCATCCTTGAAC+AGG | 0.414585 | 3_4:-62227724 | Msa0512480:CDS |
| ATGATGTAAATTTAATTATC+CGG | 0.421165 | 3_4:-62225558 | Msa0512480:three_prime_UTR |
| TTCGGGAGTGAAGTTATTCC+TGG | 0.424087 | 3_4:-62226995 | Msa0512480:CDS |
| AGCCATCTATATGGCTTCAA+TGG | 0.429672 | 3_4:-62229040 | Msa0512480:exon |
| TGGAACCAGTTTGGATTCTC+AGG | 0.429926 | 3_4:+62227620 | None:intergenic |
| TCTTACTCTCATCCCAAGTT+CGG | 0.430739 | 3_4:+62226967 | None:intergenic |
| GAAGCACGTGCCACTGCATT+CGG | 0.431857 | 3_4:-62227322 | Msa0512480:CDS |
| TCAGCATCAAGCATCTTAGA+TGG | 0.434595 | 3_4:+62226582 | None:intergenic |
| GCAAGAAGAAGAGAAAACTA+TGG | 0.442679 | 3_4:-62228889 | Msa0512480:CDS |
| CAACTAACTCTGCTAGCATC+TGG | 0.445818 | 3_4:+62228799 | None:intergenic |
| GCCCTTCATTGTTTCTCCCA+AGG | 0.449571 | 3_4:-62228860 | Msa0512480:CDS |
| GTGCTTGGTATTATACTTGG+AGG | 0.450420 | 3_4:-62227890 | Msa0512480:CDS |
| TACCGAGGTTGGGTGTAGAT+TGG | 0.453915 | 3_4:+62226612 | None:intergenic |
| AGCCATTGAAGCCATATAGA+TGG | 0.460362 | 3_4:+62229038 | None:intergenic |
| AGTGTGCTTGGTATTATACT+TGG | 0.461794 | 3_4:-62227893 | Msa0512480:CDS |
| GCAAAACCAGCTGTTCCTCT+TGG | 0.462674 | 3_4:-62227827 | Msa0512480:CDS |
| CATAATCCATTCGATACAAA+TGG | 0.464442 | 3_4:+62227410 | None:intergenic |
| TTTCCTGGTGCAAACGACTT+CGG | 0.467233 | 3_4:-62227013 | Msa0512480:CDS |
| CTCCCGAAGTCGTTTGCACC+AGG | 0.468057 | 3_4:+62227010 | None:intergenic |
| ACATTAAGTTACCTAAAATC+TGG | 0.468640 | 3_4:+62226746 | None:intergenic |
| TTTGTAGTTTATTATCAAAA+GGG | 0.474274 | 3_4:-62225491 | Msa0512480:three_prime_UTR |
| TGCTTGGTATTATACTTGGA+GGG | 0.476032 | 3_4:-62227889 | Msa0512480:CDS |
| TTCCTCTTGGAGCAAACTAT+AGG | 0.479293 | 3_4:-62227814 | Msa0512480:CDS |
| AGTTACCTAAAATCTGGTAC+TGG | 0.484700 | 3_4:+62226752 | None:intergenic |
| AGTTGAAATAGAAAAGAAAA+AGG | 0.486377 | 3_4:+62225370 | None:intergenic |
| TCTTCTTCTTGCTGAAACTG+TGG | 0.487806 | 3_4:+62228900 | None:intergenic |
| AAAATTCATCATTCTGTCGT+TGG | 0.491625 | 3_4:-62226362 | Msa0512480:CDS |
| ATGGAGGCAAATACCGAGGT+TGG | 0.492596 | 3_4:+62226601 | None:intergenic |
| TATAGAGTAGAAGACTCTTT+CGG | 0.496006 | 3_4:-62225586 | Msa0512480:three_prime_UTR |
| TTGGAATCAGAAACAGCCTT+GGG | 0.500304 | 3_4:+62228844 | None:intergenic |
| TTTGCTCCAAGAGGAACAGC+TGG | 0.502679 | 3_4:+62227821 | None:intergenic |
| TGGGATTGTCACAGTAATCA+AGG | 0.507999 | 3_4:-62225770 | Msa0512480:CDS |
| GTGGCACGTGCTTCATCCAT+TGG | 0.509798 | 3_4:+62227331 | None:intergenic |
| ACGGGACAAGTGCCTGTTCA+AGG | 0.513295 | 3_4:+62227712 | None:intergenic |
| TGCTGCAGACAGATGCTGAT+AGG | 0.514976 | 3_4:-62226172 | Msa0512480:intron |
| GCTTGGTATTATACTTGGAG+GGG | 0.521975 | 3_4:-62227888 | Msa0512480:CDS |
| TGGAGGCAAATACCGAGGTT+GGG | 0.523382 | 3_4:+62226602 | None:intergenic |
| TTATCCATTGACCAAGAAGC+GGG | 0.524482 | 3_4:-62227849 | Msa0512480:CDS |
| ATCCCAAGTTCGGTTGCACC+AGG | 0.525786 | 3_4:+62226977 | None:intergenic |
| CTTGGTATTATACTTGGAGG+GGG | 0.527339 | 3_4:-62227887 | Msa0512480:CDS |
| GAATTTGCCGAGAAGCCAAA+AGG | 0.527957 | 3_4:-62227265 | Msa0512480:CDS |
| GAGATTTATACAAGCACATA+GGG | 0.529017 | 3_4:-62227386 | Msa0512480:CDS |
| GTAGTTTATTATCAAAAGGG+TGG | 0.529105 | 3_4:-62225488 | Msa0512480:three_prime_UTR |
| GTGTCTTTGAAAGTTGCAAA+AGG | 0.530776 | 3_4:+62225326 | None:intergenic |
| CAAGAATTCTCATATCAAAA+GGG | 0.532293 | 3_4:-62226108 | Msa0512480:CDS |
| ATGGCTTCAATGGCTTCGAT+TGG | 0.534147 | 3_4:-62229030 | Msa0512480:CDS |
| TTCCTGGTGCAACCGAACTT+GGG | 0.535911 | 3_4:-62226979 | Msa0512480:CDS |
| CAATGGATAAAGACGCGTCC+CGG | 0.540169 | 3_4:+62227862 | None:intergenic |
| AGAGATTTATACAAGCACAT+AGG | 0.540805 | 3_4:-62227387 | Msa0512480:CDS |
| AGAGTCCTGAGAATCCAAAC+TGG | 0.541444 | 3_4:-62227625 | Msa0512480:CDS |
| GAAGATGAGGATGATGATGA+AGG | 0.544071 | 3_4:+62228994 | None:intergenic |
| GTGCAAGCTTATTTATACGA+TGG | 0.548370 | 3_4:-62226839 | Msa0512480:CDS |
| TCTAATGAAGATTGACGAAG+AGG | 0.549165 | 3_4:-62227299 | Msa0512480:CDS |
| CCATGTTGCTCGCATATGCA+CGG | 0.549892 | 3_4:+62227693 | None:intergenic |
| TGTTTAGGCAGTTGCTAACA+GGG | 0.550516 | 3_4:+62227780 | None:intergenic |
| CGTGCATATGCGAGCAACAT+GGG | 0.553230 | 3_4:-62227692 | Msa0512480:CDS |
| ATCAGAAGGTGCAATTATTG+AGG | 0.553577 | 3_4:-62226324 | Msa0512480:CDS |
| ATCCATTGGCAATGCAGCAA+CGG | 0.557333 | 3_4:+62227345 | None:intergenic |
| CACCGTTGCTGCATTGCCAA+TGG | 0.558190 | 3_4:-62227347 | Msa0512480:CDS |
| AGATGATGAAGAAGAAGATG+AGG | 0.558515 | 3_4:+62228981 | None:intergenic |
| GAACAGCTCTGCTTCCGCGT+TGG | 0.559497 | 3_4:-62225643 | Msa0512480:three_prime_UTR |
| GAATGAGAGGTTACGTGCAA+TGG | 0.561185 | 3_4:+62228954 | None:intergenic |
| TTTGGAATCAGAAACAGCCT+TGG | 0.565050 | 3_4:+62228843 | None:intergenic |
| ATGCCTTATATTGCTAGTAT+GGG | 0.567877 | 3_4:-62227085 | Msa0512480:CDS |
| TTATTTATACGATGGATACT+GGG | 0.571162 | 3_4:-62226831 | Msa0512480:CDS |
| AGCCTTGGGAGAAACAATGA+AGG | 0.573342 | 3_4:+62228858 | None:intergenic |
| CAATGTGCAAGAAGCTGCAA+GGG | 0.577474 | 3_4:-62225818 | Msa0512480:CDS |
| GAATTCTTGCCAATACCAAT+CGG | 0.579260 | 3_4:+62226122 | None:intergenic |
| GGTGCACGTTATATTTGGCT+CGG | 0.579501 | 3_4:-62225614 | Msa0512480:three_prime_UTR |
| TTGAGGACACATTGTTAATG+GGG | 0.585614 | 3_4:-62226307 | Msa0512480:CDS |
| GGAAGACATCGGTACAATTG+AGG | 0.587153 | 3_4:-62226810 | Msa0512480:CDS |
| ACAATGTGCAAGAAGCTGCA+AGG | 0.590355 | 3_4:-62225819 | Msa0512480:CDS |
| TGGTGACCATTTGTATCGAA+TGG | 0.590390 | 3_4:-62227416 | Msa0512480:CDS |
| CATGTTGCTCGCATATGCAC+GGG | 0.591727 | 3_4:+62227694 | None:intergenic |
| AGCCTATAGTTTGCTCCAAG+AGG | 0.591774 | 3_4:+62227812 | None:intergenic |
| CTGCGATCTTGCATATCAGA+AGG | 0.603808 | 3_4:-62226338 | Msa0512480:CDS |
| GCTAAAGGCAGTGTTCCGAT+TGG | 0.615135 | 3_4:-62226137 | Msa0512480:CDS |
| CTAATGAAGATTGACGAAGA+GGG | 0.623214 | 3_4:-62227298 | Msa0512480:CDS |
| GAGGAAATAGTATACTAGAG+AGG | 0.626379 | 3_4:+62225712 | None:intergenic |
| TGCAGACAGATGCTGATAGG+AGG | 0.629052 | 3_4:-62226169 | Msa0512480:intron |
| CCGTGCATATGCGAGCAACA+TGG | 0.631421 | 3_4:-62227693 | Msa0512480:CDS |
| TTTATCCATTGACCAAGAAG+CGG | 0.635327 | 3_4:-62227850 | Msa0512480:CDS |
| TCTCGATGACGAGAGAGCAA+AGG | 0.636235 | 3_4:-62227110 | Msa0512480:CDS |
| CTCCAATCTACACCCAACCT+CGG | 0.638794 | 3_4:-62226614 | Msa0512480:CDS |
| ACTGACAGTGTTATTGGTGA+AGG | 0.639826 | 3_4:-62226555 | Msa0512480:CDS |
| GGGTGTTGCACAGCAGCAAG+AGG | 0.640285 | 3_4:+62225693 | None:intergenic |
| TAATGAAGATTGACGAAGAG+GGG | 0.642589 | 3_4:-62227297 | Msa0512480:CDS |
| CTTTAGATGACAGTTCCACT+CGG | 0.643445 | 3_4:+62225736 | None:intergenic |
| TAGAATTGGAGACGATGTGA+AGG | 0.652530 | 3_4:-62226066 | Msa0512480:intron |
| GCCTTGGGAGAAACAATGAA+GGG | 0.652631 | 3_4:+62228859 | None:intergenic |
| ATTACAGGGAACTGCAGATG+CGG | 0.654738 | 3_4:-62227497 | Msa0512480:intron |
| TGAGGACACATTGTTAATGG+GGG | 0.655322 | 3_4:-62226306 | Msa0512480:CDS |
| CTTCATTAGACCGAATGCAG+TGG | 0.656858 | 3_4:+62227312 | None:intergenic |
| TTCACTTCATCACAGCTCTG+TGG | 0.657603 | 3_4:-62228934 | Msa0512480:CDS |
| GCATCAAGCATCTTAGATGG+AGG | 0.658896 | 3_4:+62226585 | None:intergenic |
| GAAGCTGCAAGGGAAACTGA+AGG | 0.667346 | 3_4:-62225808 | Msa0512480:CDS |
| CAAACAAAGAAATCAATGTG+TGG | 0.677196 | 3_4:+62229134 | None:intergenic |
| AGGGAACTGCAGATGCGGTG+AGG | 0.678286 | 3_4:-62227492 | Msa0512480:CDS |
| TTGCACCAGGAAACTTGTCG+CGG | 0.680161 | 3_4:+62227023 | None:intergenic |
| GATGGATACTGGGAAGACAT+CGG | 0.689450 | 3_4:-62226821 | Msa0512480:CDS |
| GCATATGCGAGCAACATGGG+TGG | 0.694220 | 3_4:-62227689 | Msa0512480:CDS |
| AAGGATGCATTGATTCCGAG+TGG | 0.694244 | 3_4:-62225751 | Msa0512480:CDS |
| GCTGTGATGAAGTGAATGAG+AGG | 0.714707 | 3_4:+62228941 | None:intergenic |
| ATGCTGAATTGAATTGTGTG+AGG | 0.733174 | 3_4:+62227735 | None:intergenic |
| TTAGATGGAGGCAAATACCG+AGG | 0.735785 | 3_4:+62226597 | None:intergenic |
| CGTGCACCAGAAAACCAACG+CGG | 0.814333 | 3_4:+62225629 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAAGAACATATTATA+TGG | + | chr3_4:62227257-62227276 | None:intergenic | 15.0% |
| !! | ATATTTAATCAAAGTTTACA+TGG | - | chr3_4:62228571-62228590 | Msa0512480:intron | 15.0% |
| !! | ATGATGTAAATTTAATTATC+CGG | - | chr3_4:62228910-62228929 | Msa0512480:CDS | 15.0% |
| !!! | TTTTGTAGTTTATTATCAAA+AGG | - | chr3_4:62228976-62228995 | Msa0512480:CDS | 15.0% |
| !! | TTTGTAGTTTATTATCAAAA+GGG | - | chr3_4:62228977-62228996 | Msa0512480:CDS | 15.0% |
| !!! | TAATTTGAGTTTGTTGATAA+TGG | - | chr3_4:62225832-62225851 | Msa0512480:CDS | 20.0% |
| !!! | AATTTGAGTTTGTTGATAAT+GGG | - | chr3_4:62225833-62225852 | Msa0512480:CDS | 20.0% |
| !!! | TTGATATTGTAGTTTGTTTT+TGG | - | chr3_4:62225861-62225880 | Msa0512480:intron | 20.0% |
| !!! | TGATATTGTAGTTTGTTTTT+GGG | - | chr3_4:62225862-62225881 | Msa0512480:intron | 20.0% |
| !!! | GATGAATTTTTGACATAAAA+TGG | - | chr3_4:62225914-62225933 | Msa0512480:intron | 20.0% |
| !!! | TTTATTTGAGTTTTTGTATG+TGG | - | chr3_4:62225983-62226002 | Msa0512480:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATGAT+CGG | + | chr3_4:62226177-62226196 | None:intergenic | 20.0% |
| !! | TTAGGAACTATATTTGAATT+TGG | - | chr3_4:62226505-62226524 | Msa0512480:intron | 20.0% |
| !! | AACTATATTTGAATTTGGTA+GGG | - | chr3_4:62226510-62226529 | Msa0512480:intron | 20.0% |
| !!! | GTAATGTAATGATTTTATGA+TGG | - | chr3_4:62226545-62226564 | Msa0512480:intron | 20.0% |
| !! | AACAACAGAAAACATATATA+AGG | + | chr3_4:62226886-62226905 | None:intergenic | 20.0% |
| !!! | TGTTATGACTTTTTTGTATT+AGG | - | chr3_4:62227316-62227335 | Msa0512480:CDS | 20.0% |
| !!! | AGGGAAAAATATGAATTTTT+TGG | + | chr3_4:62227962-62227981 | None:intergenic | 20.0% |
| !! | ACAAATTTGTACATATTTCT+TGG | - | chr3_4:62228004-62228023 | Msa0512480:intron | 20.0% |
| !!! | AAGGTTATTTCATAAAAAGT+GGG | - | chr3_4:62228679-62228698 | Msa0512480:intron | 20.0% |
| !! | AGTTGAAATAGAAAAGAAAA+AGG | + | chr3_4:62229101-62229120 | None:intergenic | 20.0% |
| !!! | TTTCTCAATGTTTTAGCAAT+TGG | - | chr3_4:62225802-62225821 | Msa0512480:CDS | 25.0% |
| !!! | TTCTCAATGTTTTAGCAATT+GGG | - | chr3_4:62225803-62225822 | Msa0512480:CDS | 25.0% |
| !! | ATGTTACGTGTTTTATGTAT+TGG | - | chr3_4:62225955-62225974 | Msa0512480:intron | 25.0% |
| !! | TGTTACGTGTTTTATGTATT+GGG | - | chr3_4:62225956-62225975 | Msa0512480:intron | 25.0% |
| ! | TTGACATTATCAATCATATG+AGG | + | chr3_4:62226060-62226079 | None:intergenic | 25.0% |
| ! | ACTATCACACTAATTTGAAA+TGG | - | chr3_4:62226102-62226121 | Msa0512480:CDS | 25.0% |
| ! | ATTCACACAATATTATCATG+TGG | - | chr3_4:62226379-62226398 | Msa0512480:intron | 25.0% |
| ! | TTCACACAATATTATCATGT+GGG | - | chr3_4:62226380-62226399 | Msa0512480:intron | 25.0% |
| !! | TAAGAGTTTTTGCTTTGTAT+TGG | + | chr3_4:62226441-62226460 | None:intergenic | 25.0% |
| ! | GAACTATATTTGAATTTGGT+AGG | - | chr3_4:62226509-62226528 | Msa0512480:intron | 25.0% |
| ! | ACTATATTTGAATTTGGTAG+GGG | - | chr3_4:62226511-62226530 | Msa0512480:intron | 25.0% |
| ! | TCTTTGATATGTTACTGTTT+AGG | + | chr3_4:62226706-62226725 | None:intergenic | 25.0% |
| ! | TTTATTGCTATGATTACTTG+TGG | - | chr3_4:62226910-62226929 | Msa0512480:intron | 25.0% |
| !!! | TTAGGTTGATACTACTATTT+TGG | - | chr3_4:62227334-62227353 | Msa0512480:CDS | 25.0% |
| !!! | TAGGTTGATACTACTATTTT+GGG | - | chr3_4:62227335-62227354 | Msa0512480:CDS | 25.0% |
| ! | TTATTTATACGATGGATACT+GGG | - | chr3_4:62227637-62227656 | Msa0512480:CDS | 25.0% |
| !! | GCTTTTTATAATGCAAATCT+GGG | - | chr3_4:62227680-62227699 | Msa0512480:CDS | 25.0% |
| ! | ACATTAAGTTACCTAAAATC+TGG | + | chr3_4:62227725-62227744 | None:intergenic | 25.0% |
| !!! | GATTTTAGGTAACTTAATGT+TGG | - | chr3_4:62227725-62227744 | Msa0512480:CDS | 25.0% |
| ! | CAGTAGGATGAATAAATAAA+AGG | + | chr3_4:62227751-62227770 | None:intergenic | 25.0% |
| ! | GTTAAAATAAAACAGACAGT+AGG | + | chr3_4:62227767-62227786 | None:intergenic | 25.0% |
| ! | AACAAACATTAAACATAAGC+TGG | + | chr3_4:62227801-62227820 | None:intergenic | 25.0% |
| ! | AGCTTATGTTTAATGTTTGT+TGG | - | chr3_4:62227800-62227819 | Msa0512480:CDS | 25.0% |
| ! | GCTTATGTTTAATGTTTGTT+GGG | - | chr3_4:62227801-62227820 | Msa0512480:CDS | 25.0% |
| ! | GGAACAAAATATTGAAAACA+AGG | + | chr3_4:62228076-62228095 | None:intergenic | 25.0% |
| ! | TGTCATATTGTGAAGTTAAT+AGG | - | chr3_4:62228217-62228236 | Msa0512480:intron | 25.0% |
| !!! | TTCAATATTGGTTTTCTGAT+TGG | - | chr3_4:62228271-62228290 | Msa0512480:intron | 25.0% |
| ! | CAAGAATTCTCATATCAAAA+GGG | - | chr3_4:62228360-62228379 | Msa0512480:intron | 25.0% |
| !! | GAAGGTTATTTCATAAAAAG+TGG | - | chr3_4:62228678-62228697 | Msa0512480:intron | 25.0% |
| CAAACAAAGAAATCAATGTG+TGG | + | chr3_4:62225337-62225356 | None:intergenic | 30.0% | |
| TAGTGAGAGATAGAGAAAAT+GGG | - | chr3_4:62225741-62225760 | Msa0512480:CDS | 30.0% | |
| !!! | GTTTGTTTTTGGGTTTCTTA+AGG | - | chr3_4:62225872-62225891 | Msa0512480:intron | 30.0% |
| TTTCTTAAGGTAGATCAGAT+TGG | - | chr3_4:62225885-62225904 | Msa0512480:intron | 30.0% | |
| !! | TTTGAGTTTTTGTATGTGGT+TGG | - | chr3_4:62225987-62226006 | Msa0512480:intron | 30.0% |
| AGTGCAAATAATGTCATGAT+TGG | + | chr3_4:62226085-62226104 | None:intergenic | 30.0% | |
| ! | TGCATTTTGAATATGAAGCA+AGG | + | chr3_4:62226292-62226311 | None:intergenic | 30.0% |
| ATATAAGGTTGCTAATTACC+TGG | + | chr3_4:62226871-62226890 | None:intergenic | 30.0% | |
| TTGAATGCTTTCACTATTAC+AGG | - | chr3_4:62226956-62226975 | Msa0512480:intron | 30.0% | |
| TGAATGCTTTCACTATTACA+GGG | - | chr3_4:62226957-62226976 | Msa0512480:intron | 30.0% | |
| CATAATCCATTCGATACAAA+TGG | + | chr3_4:62227061-62227080 | None:intergenic | 30.0% | |
| AGAGATTTATACAAGCACAT+AGG | - | chr3_4:62227081-62227100 | Msa0512480:CDS | 30.0% | |
| GAGATTTATACAAGCACATA+GGG | - | chr3_4:62227082-62227101 | Msa0512480:CDS | 30.0% | |
| AATGCCTTATATTGCTAGTA+TGG | - | chr3_4:62227382-62227401 | Msa0512480:CDS | 30.0% | |
| ATGCCTTATATTGCTAGTAT+GGG | - | chr3_4:62227383-62227402 | Msa0512480:CDS | 30.0% | |
| ATACCCATACTAGCAATATA+AGG | + | chr3_4:62227389-62227408 | None:intergenic | 30.0% | |
| CTTTGTATTGAACAGATAGA+AGG | + | chr3_4:62227530-62227549 | None:intergenic | 30.0% | |
| CTTATTTATACGATGGATAC+TGG | - | chr3_4:62227636-62227655 | Msa0512480:CDS | 30.0% | |
| ! | GGCTTTTTATAATGCAAATC+TGG | - | chr3_4:62227679-62227698 | Msa0512480:CDS | 30.0% |
| ! | TTTAATGTTTGTTGGGACAT+TGG | - | chr3_4:62227808-62227827 | Msa0512480:CDS | 30.0% |
| AAAATTCATCATTCTGTCGT+TGG | - | chr3_4:62228106-62228125 | Msa0512480:intron | 30.0% | |
| TATTGAGGACACATTGTTAA+TGG | - | chr3_4:62228159-62228178 | Msa0512480:intron | 30.0% | |
| ATTGAGGACACATTGTTAAT+GGG | - | chr3_4:62228160-62228179 | Msa0512480:intron | 30.0% | |
| !! | GGAAGTACTAACTTCAATAT+TGG | - | chr3_4:62228259-62228278 | Msa0512480:intron | 30.0% |
| GCAAGAATTCTCATATCAAA+AGG | - | chr3_4:62228359-62228378 | Msa0512480:intron | 30.0% | |
| ATTGACAAGAATGCTAGAAT+TGG | - | chr3_4:62228388-62228407 | Msa0512480:intron | 30.0% | |
| TATAGAGTAGAAGACTCTTT+CGG | - | chr3_4:62228882-62228901 | Msa0512480:CDS | 30.0% | |
| !!! | ACAAAGAAGCTTTTTTTGAC+CGG | + | chr3_4:62228932-62228951 | None:intergenic | 30.0% |
| GTAGTTTATTATCAAAAGGG+TGG | - | chr3_4:62228980-62228999 | Msa0512480:CDS | 30.0% | |
| !! | TAATGTGATTTGCTTCTTCT+AGG | - | chr3_4:62229065-62229084 | Msa0512480:five_prime_UTR | 30.0% |
| AGATGATGAAGAAGAAGATG+AGG | + | chr3_4:62225490-62225509 | None:intergenic | 35.0% | |
| GCAAGAAGAAGAGAAAACTA+TGG | - | chr3_4:62225579-62225598 | Msa0512480:three_prime_UTR | 35.0% | |
| ! | AAGACAAGTCTGTGAGTTTT+TGG | + | chr3_4:62225646-62225665 | None:intergenic | 35.0% |
| GTAGTGAGAGATAGAGAAAA+TGG | - | chr3_4:62225740-62225759 | Msa0512480:CDS | 35.0% | |
| AGTGAGAGATAGAGAAAATG+GGG | - | chr3_4:62225742-62225761 | Msa0512480:CDS | 35.0% | |
| TCTCAAATTATGATCGGTGT+CGG | + | chr3_4:62226171-62226190 | None:intergenic | 35.0% | |
| CATATATGTCAATGTCGTGA+AGG | - | chr3_4:62226213-62226232 | Msa0512480:intron | 35.0% | |
| ACTCAATTGCACAAACAATG+AGG | + | chr3_4:62226328-62226347 | None:intergenic | 35.0% | |
| !!! | AACCCTGCATTTTTTGTGTT+AGG | - | chr3_4:62226474-62226493 | Msa0512480:intron | 35.0% |
| TGCCTAACACAAAAAATGCA+GGG | + | chr3_4:62226479-62226498 | None:intergenic | 35.0% | |
| ATGCCTAACACAAAAAATGC+AGG | + | chr3_4:62226480-62226499 | None:intergenic | 35.0% | |
| TTGTGTTAGGCATGTTTGTT+AGG | - | chr3_4:62226487-62226506 | Msa0512480:intron | 35.0% | |
| AGTGTGCTTGGTATTATACT+TGG | - | chr3_4:62226575-62226594 | Msa0512480:CDS | 35.0% | |
| TGCTTGGTATTATACTTGGA+GGG | - | chr3_4:62226579-62226598 | Msa0512480:CDS | 35.0% | |
| TTTATCCATTGACCAAGAAG+CGG | - | chr3_4:62226618-62226637 | Msa0512480:CDS | 35.0% | |
| ATGCTGAATTGAATTGTGTG+AGG | + | chr3_4:62226736-62226755 | None:intergenic | 35.0% | |
| ATGGGTGGTTACAAAAATGA+AGG | - | chr3_4:62226794-62226813 | Msa0512480:CDS | 35.0% | |
| CAAAAATGAAGGTTTCGTTG+AGG | - | chr3_4:62226805-62226824 | Msa0512480:CDS | 35.0% | |
| ! | GCAATATTTATGGCTTTTCG+AGG | - | chr3_4:62226998-62227017 | Msa0512480:CDS | 35.0% |
| !!! | GCACAATGTTTTGGAATACT+TGG | - | chr3_4:62227022-62227041 | Msa0512480:CDS | 35.0% |
| TCTAATGAAGATTGACGAAG+AGG | - | chr3_4:62227169-62227188 | Msa0512480:intron | 35.0% | |
| CTAATGAAGATTGACGAAGA+GGG | - | chr3_4:62227170-62227189 | Msa0512480:intron | 35.0% | |
| TAATGAAGATTGACGAAGAG+GGG | - | chr3_4:62227171-62227190 | Msa0512480:intron | 35.0% | |
| GTGCAAGCTTATTTATACGA+TGG | - | chr3_4:62227629-62227648 | Msa0512480:CDS | 35.0% | |
| !!! | AAAATCTGGTACTGGCTTTT+TGG | + | chr3_4:62227711-62227730 | None:intergenic | 35.0% |
| ! | AAAAGCCAGTACCAGATTTT+AGG | - | chr3_4:62227711-62227730 | Msa0512480:CDS | 35.0% |
| AGTTACCTAAAATCTGGTAC+TGG | + | chr3_4:62227719-62227738 | None:intergenic | 35.0% | |
| ACATAAGCTGGCTGTTATTA+TGG | + | chr3_4:62227789-62227808 | None:intergenic | 35.0% | |
| GATATCACTGACAGTGTTAT+TGG | - | chr3_4:62227907-62227926 | Msa0512480:intron | 35.0% | |
| TGGTGAAGGATGTGTAATTA+AGG | - | chr3_4:62227927-62227946 | Msa0512480:intron | 35.0% | |
| ATACTAGTAACGATGGAGTA+GGG | + | chr3_4:62227981-62228000 | None:intergenic | 35.0% | |
| ! | TGATGAATTTTGCAGTTCTG+TGG | + | chr3_4:62228097-62228116 | None:intergenic | 35.0% |
| ! | ATCAGAAGGTGCAATTATTG+AGG | - | chr3_4:62228144-62228163 | Msa0512480:intron | 35.0% |
| TTGAGGACACATTGTTAATG+GGG | - | chr3_4:62228161-62228180 | Msa0512480:intron | 35.0% | |
| !! | GGAATTGACTTTAGTTTGAC+TGG | - | chr3_4:62228238-62228257 | Msa0512480:intron | 35.0% |
| GAATTCTTGCCAATACCAAT+CGG | + | chr3_4:62228349-62228368 | None:intergenic | 35.0% | |
| GAGGAAATAGTATACTAGAG+AGG | + | chr3_4:62228759-62228778 | None:intergenic | 35.0% | |
| ! | TTTCTGGTGCACGTTATATT+TGG | - | chr3_4:62228849-62228868 | Msa0512480:CDS | 35.0% |
| AGCCATCTATATGGCTTCAA+TGG | - | chr3_4:62225428-62225447 | Msa0512480:three_prime_UTR | 40.0% | |
| AGCCATTGAAGCCATATAGA+TGG | + | chr3_4:62225433-62225452 | None:intergenic | 40.0% | |
| ! | GAAGATGAGGATGATGATGA+AGG | + | chr3_4:62225477-62225496 | None:intergenic | 40.0% |
| TCTTCTTCTTGCTGAAACTG+TGG | + | chr3_4:62225571-62225590 | None:intergenic | 40.0% | |
| TTGGAATCAGAAACAGCCTT+GGG | + | chr3_4:62225627-62225646 | None:intergenic | 40.0% | |
| ! | TTTGGAATCAGAAACAGCCT+TGG | + | chr3_4:62225628-62225647 | None:intergenic | 40.0% |
| TGGTCAAAATCTATGCAGCA+CGG | - | chr3_4:62226122-62226141 | Msa0512480:CDS | 40.0% | |
| TATGAAGCAAGGACATTCCT+TGG | + | chr3_4:62226281-62226300 | None:intergenic | 40.0% | |
| ! | CAATATTATCATGTGGGCTG+TGG | - | chr3_4:62226386-62226405 | Msa0512480:intron | 40.0% |
| GTGCTTGGTATTATACTTGG+AGG | - | chr3_4:62226578-62226597 | Msa0512480:CDS | 40.0% | |
| GCTTGGTATTATACTTGGAG+GGG | - | chr3_4:62226580-62226599 | Msa0512480:CDS | 40.0% | |
| CTTGGTATTATACTTGGAGG+GGG | - | chr3_4:62226581-62226600 | Msa0512480:CDS | 40.0% | |
| TTATCCATTGACCAAGAAGC+GGG | - | chr3_4:62226619-62226638 | Msa0512480:CDS | 40.0% | |
| TTCCTCTTGGAGCAAACTAT+AGG | - | chr3_4:62226654-62226673 | Msa0512480:intron | 40.0% | |
| TGTTTAGGCAGTTGCTAACA+GGG | + | chr3_4:62226691-62226710 | None:intergenic | 40.0% | |
| TCAATTCAGCATCCTTGAAC+AGG | - | chr3_4:62226744-62226763 | Msa0512480:intron | 40.0% | |
| CTAATTACCTGGAACCAGTT+TGG | + | chr3_4:62226860-62226879 | None:intergenic | 40.0% | |
| ATGCGGTGAGGCAATATTTA+TGG | - | chr3_4:62226988-62227007 | Msa0512480:CDS | 40.0% | |
| !! | TTTCGAGGAGCACAATGTTT+TGG | - | chr3_4:62227013-62227032 | Msa0512480:CDS | 40.0% |
| ! | TTGGAATACTTGGTTCTTGC+TGG | - | chr3_4:62227032-62227051 | Msa0512480:CDS | 40.0% |
| TGGTGACCATTTGTATCGAA+TGG | - | chr3_4:62227052-62227071 | Msa0512480:CDS | 40.0% | |
| ! | GCTTTCAACTGTTCTCCTTT+TGG | + | chr3_4:62227221-62227240 | None:intergenic | 40.0% |
| TCTTACTCTCATCCCAAGTT+CGG | + | chr3_4:62227504-62227523 | None:intergenic | 40.0% | |
| ACGTATTTGCGAATCTGCTT+AGG | - | chr3_4:62227607-62227626 | Msa0512480:intron | 40.0% | |
| TCAGCATCAAGCATCTTAGA+TGG | + | chr3_4:62227889-62227908 | None:intergenic | 40.0% | |
| ! | ACTGACAGTGTTATTGGTGA+AGG | - | chr3_4:62227913-62227932 | Msa0512480:intron | 40.0% |
| CATACTAGTAACGATGGAGT+AGG | + | chr3_4:62227982-62228001 | None:intergenic | 40.0% | |
| CTACTCCATCGTTACTAGTA+TGG | - | chr3_4:62227980-62227999 | Msa0512480:intron | 40.0% | |
| TTGTGCCATACTAGTAACGA+TGG | + | chr3_4:62227988-62228007 | None:intergenic | 40.0% | |
| TGAGGACACATTGTTAATGG+GGG | - | chr3_4:62228162-62228181 | Msa0512480:intron | 40.0% | |
| AATGGGGGCAGATTATTATG+AGG | - | chr3_4:62228177-62228196 | Msa0512480:intron | 40.0% | |
| ! | AGATGCTGATAGGAGGTTTT+TGG | - | chr3_4:62228306-62228325 | Msa0512480:intron | 40.0% |
| TAGAATTGGAGACGATGTGA+AGG | - | chr3_4:62228402-62228421 | Msa0512480:intron | 40.0% | |
| AGAGAACAATGCACTTAGAC+AGG | + | chr3_4:62228477-62228496 | None:intergenic | 40.0% | |
| CATGAATGTGGAGCAAGATA+TGG | + | chr3_4:62228507-62228526 | None:intergenic | 40.0% | |
| TGGGATTGTCACAGTAATCA+AGG | - | chr3_4:62228698-62228717 | Msa0512480:intron | 40.0% | |
| CTTTAGATGACAGTTCCACT+CGG | + | chr3_4:62228735-62228754 | None:intergenic | 40.0% | |
| ACCTTCCAGCAGTGAAAATA+GGG | + | chr3_4:62228798-62228817 | None:intergenic | 40.0% | |
| GCCTCGAAAAGCCATCTATA+TGG | - | chr3_4:62225419-62225438 | Msa0512480:three_prime_UTR | 45.0% | |
| ! | GCCATATAGATGGCTTTTCG+AGG | + | chr3_4:62225423-62225442 | None:intergenic | 45.0% |
| ATGGCTTCAATGGCTTCGAT+TGG | - | chr3_4:62225438-62225457 | Msa0512480:three_prime_UTR | 45.0% | |
| GAATGAGAGGTTACGTGCAA+TGG | + | chr3_4:62225517-62225536 | None:intergenic | 45.0% | |
| GCTGTGATGAAGTGAATGAG+AGG | + | chr3_4:62225530-62225549 | None:intergenic | 45.0% | |
| TTCACTTCATCACAGCTCTG+TGG | - | chr3_4:62225534-62225553 | Msa0512480:three_prime_UTR | 45.0% | |
| GCCTTGGGAGAAACAATGAA+GGG | + | chr3_4:62225612-62225631 | None:intergenic | 45.0% | |
| AGCCTTGGGAGAAACAATGA+AGG | + | chr3_4:62225613-62225632 | None:intergenic | 45.0% | |
| CAACTAACTCTGCTAGCATC+TGG | + | chr3_4:62225672-62225691 | None:intergenic | 45.0% | |
| ! | TGTCAATGTCGTGAAGGTGT+CGG | - | chr3_4:62226219-62226238 | Msa0512480:intron | 45.0% |
| GCAAGGACATTCCTTGGATT+AGG | + | chr3_4:62226275-62226294 | None:intergenic | 45.0% | |
| ! | GATGGTTTTCAGAGTGTGCT+TGG | - | chr3_4:62226563-62226582 | Msa0512480:CDS | 45.0% |
| !! | AGCCTATAGTTTGCTCCAAG+AGG | + | chr3_4:62226659-62226678 | None:intergenic | 45.0% |
| CTGTTTAGGCAGTTGCTAAC+AGG | + | chr3_4:62226692-62226711 | None:intergenic | 45.0% | |
| AGAGTCCTGAGAATCCAAAC+TGG | - | chr3_4:62226843-62226862 | Msa0512480:intron | 45.0% | |
| TGGAACCAGTTTGGATTCTC+AGG | + | chr3_4:62226851-62226870 | None:intergenic | 45.0% | |
| ! | TGAGAATCCAAACTGGTTCC+AGG | - | chr3_4:62226850-62226869 | Msa0512480:intron | 45.0% |
| ATTACAGGGAACTGCAGATG+CGG | - | chr3_4:62226971-62226990 | Msa0512480:intron | 45.0% | |
| ATCCATTGGCAATGCAGCAA+CGG | + | chr3_4:62227126-62227145 | None:intergenic | 45.0% | |
| CTTCATTAGACCGAATGCAG+TGG | + | chr3_4:62227159-62227178 | None:intergenic | 45.0% | |
| GAATTTGCCGAGAAGCCAAA+AGG | - | chr3_4:62227203-62227222 | Msa0512480:intron | 45.0% | |
| !!! | CTGTTCTCCTTTTGGCTTCT+CGG | + | chr3_4:62227213-62227232 | None:intergenic | 45.0% |
| TTTCCTGGTGCAAACGACTT+CGG | - | chr3_4:62227455-62227474 | Msa0512480:CDS | 45.0% | |
| TTCGGGAGTGAAGTTATTCC+TGG | - | chr3_4:62227473-62227492 | Msa0512480:CDS | 45.0% | |
| GATGGATACTGGGAAGACAT+CGG | - | chr3_4:62227647-62227666 | Msa0512480:CDS | 45.0% | |
| GGAAGACATCGGTACAATTG+AGG | - | chr3_4:62227658-62227677 | Msa0512480:CDS | 45.0% | |
| TTAGATGGAGGCAAATACCG+AGG | + | chr3_4:62227874-62227893 | None:intergenic | 45.0% | |
| GCATCAAGCATCTTAGATGG+AGG | + | chr3_4:62227886-62227905 | None:intergenic | 45.0% | |
| CTGCGATCTTGCATATCAGA+AGG | - | chr3_4:62228130-62228149 | Msa0512480:intron | 45.0% | |
| !!! | AGGAGGTTTTTGGCTGCTAA+AGG | - | chr3_4:62228316-62228335 | Msa0512480:intron | 45.0% |
| ATCTTGCTCCACATTCATGC+TGG | - | chr3_4:62228508-62228527 | Msa0512480:intron | 45.0% | |
| TCACTCTTCCAGCATGAATG+TGG | + | chr3_4:62228519-62228538 | None:intergenic | 45.0% | |
| ACATTCATGCTGGAAGAGTG+AGG | - | chr3_4:62228518-62228537 | Msa0512480:intron | 45.0% | |
| CATTCATGCTGGAAGAGTGA+GGG | - | chr3_4:62228519-62228538 | Msa0512480:intron | 45.0% | |
| ACAATGTGCAAGAAGCTGCA+AGG | - | chr3_4:62228649-62228668 | Msa0512480:intron | 45.0% | |
| CAATGTGCAAGAAGCTGCAA+GGG | - | chr3_4:62228650-62228669 | Msa0512480:intron | 45.0% | |
| !! | AAGGATGCATTGATTCCGAG+TGG | - | chr3_4:62228717-62228736 | Msa0512480:intron | 45.0% |
| ! | CAACACCCTATTTTCACTGC+TGG | - | chr3_4:62228790-62228809 | Msa0512480:intron | 45.0% |
| ! | ACCCTATTTTCACTGCTGGA+AGG | - | chr3_4:62228794-62228813 | Msa0512480:intron | 45.0% |
| CACCTTCCAGCAGTGAAAAT+AGG | + | chr3_4:62228799-62228818 | None:intergenic | 45.0% | |
| GGTGCACGTTATATTTGGCT+CGG | - | chr3_4:62228854-62228873 | Msa0512480:CDS | 45.0% | |
| ! | GCCCTTCATTGTTTCTCCCA+AGG | - | chr3_4:62225608-62225627 | Msa0512480:three_prime_UTR | 50.0% |
| GATTAGGTGTGTCCCTGTGT+CGG | + | chr3_4:62226259-62226278 | None:intergenic | 50.0% | |
| ACAGGGACACACCTAATCCA+AGG | - | chr3_4:62226261-62226280 | Msa0512480:intron | 50.0% | |
| ! | ATTATACTTGGAGGGGGTGC+CGG | - | chr3_4:62226587-62226606 | Msa0512480:CDS | 50.0% |
| CAATGGATAAAGACGCGTCC+CGG | + | chr3_4:62226609-62226628 | None:intergenic | 50.0% | |
| TTTGCCCGCTTCTTGGTCAA+TGG | + | chr3_4:62226626-62226645 | None:intergenic | 50.0% | |
| GCAAAACCAGCTGTTCCTCT+TGG | - | chr3_4:62226641-62226660 | Msa0512480:intron | 50.0% | |
| TTTGCTCCAAGAGGAACAGC+TGG | + | chr3_4:62226650-62226669 | None:intergenic | 50.0% | |
| CATGTTGCTCGCATATGCAC+GGG | + | chr3_4:62226777-62226796 | None:intergenic | 50.0% | |
| CCATGTTGCTCGCATATGCA+CGG | + | chr3_4:62226778-62226797 | None:intergenic | 50.0% | |
| CGTGCATATGCGAGCAACAT+GGG | - | chr3_4:62226776-62226795 | Msa0512480:CDS | 50.0% | |
| TCTCGATGACGAGAGAGCAA+AGG | - | chr3_4:62227358-62227377 | Msa0512480:CDS | 50.0% | |
| TTGCACCAGGAAACTTGTCG+CGG | + | chr3_4:62227448-62227467 | None:intergenic | 50.0% | |
| TTCCTGGTGCAAACGACTTC+GGG | - | chr3_4:62227456-62227475 | Msa0512480:CDS | 50.0% | |
| ATTCCTGGTGCAACCGAACT+TGG | - | chr3_4:62227488-62227507 | Msa0512480:CDS | 50.0% | |
| TTCCTGGTGCAACCGAACTT+GGG | - | chr3_4:62227489-62227508 | Msa0512480:CDS | 50.0% | |
| CTCCAATCTACACCCAACCT+CGG | - | chr3_4:62227854-62227873 | Msa0512480:CDS | 50.0% | |
| TACCGAGGTTGGGTGTAGAT+TGG | + | chr3_4:62227859-62227878 | None:intergenic | 50.0% | |
| TGGAGGCAAATACCGAGGTT+GGG | + | chr3_4:62227869-62227888 | None:intergenic | 50.0% | |
| ATGGAGGCAAATACCGAGGT+TGG | + | chr3_4:62227870-62227889 | None:intergenic | 50.0% | |
| TGCTGCAGACAGATGCTGAT+AGG | - | chr3_4:62228296-62228315 | Msa0512480:intron | 50.0% | |
| TGCAGACAGATGCTGATAGG+AGG | - | chr3_4:62228299-62228318 | Msa0512480:intron | 50.0% | |
| GCTAAAGGCAGTGTTCCGAT+TGG | - | chr3_4:62228331-62228350 | Msa0512480:intron | 50.0% | |
| GGCAGTGTTCCGATTGGTAT+TGG | - | chr3_4:62228337-62228356 | Msa0512480:intron | 50.0% | |
| TGCTGGAAGAGTGAGGGAAA+TGG | - | chr3_4:62228525-62228544 | Msa0512480:intron | 50.0% | |
| GCTGGAAGAGTGAGGGAAAT+GGG | - | chr3_4:62228526-62228545 | Msa0512480:intron | 50.0% | |
| CTGGAAGAGTGAGGGAAATG+GGG | - | chr3_4:62228527-62228546 | Msa0512480:intron | 50.0% | |
| TGGAAGAGTGAGGGAAATGG+GGG | - | chr3_4:62228528-62228547 | Msa0512480:intron | 50.0% | |
| GAAGCTGCAAGGGAAACTGA+AGG | - | chr3_4:62228660-62228679 | Msa0512480:intron | 50.0% | |
| CACACACACACACTCAGTGC+AGG | - | chr3_4:62225397-62225416 | Msa0512480:three_prime_UTR | 55.0% | |
| ! | GTGGGCTGTGGCTGTTAGAT+TGG | - | chr3_4:62226398-62226417 | Msa0512480:intron | 55.0% |
| !! | TTATACTTGGAGGGGGTGCC+GGG | - | chr3_4:62226588-62226607 | Msa0512480:CDS | 55.0% |
| !!! | AGCTGGTTTTGCCCGCTTCT+TGG | + | chr3_4:62226633-62226652 | None:intergenic | 55.0% |
| ACGGGACAAGTGCCTGTTCA+AGG | + | chr3_4:62226759-62226778 | None:intergenic | 55.0% | |
| CCGTGCATATGCGAGCAACA+TGG | - | chr3_4:62226775-62226794 | Msa0512480:CDS | 55.0% | |
| GCATATGCGAGCAACATGGG+TGG | - | chr3_4:62226779-62226798 | Msa0512480:CDS | 55.0% | |
| CACCGTTGCTGCATTGCCAA+TGG | - | chr3_4:62227121-62227140 | Msa0512480:CDS | 55.0% | |
| GTGGCACGTGCTTCATCCAT+TGG | + | chr3_4:62227140-62227159 | None:intergenic | 55.0% | |
| ! | GAAGCACGTGCCACTGCATT+CGG | - | chr3_4:62227146-62227165 | Msa0512480:intron | 55.0% |
| ATCCCAAGTTCGGTTGCACC+AGG | + | chr3_4:62227494-62227513 | None:intergenic | 55.0% | |
| !!! | CTGCTTCCGCGTTGGTTTTC+TGG | - | chr3_4:62228833-62228852 | Msa0512480:CDS | 55.0% |
| CGTGCACCAGAAAACCAACG+CGG | + | chr3_4:62228842-62228861 | None:intergenic | 55.0% | |
| ACTGACGCGTGTCCGACACA+GGG | - | chr3_4:62226244-62226263 | Msa0512480:intron | 60.0% | |
| AGGGAACTGCAGATGCGGTG+AGG | - | chr3_4:62226976-62226995 | Msa0512480:CDS | 60.0% | |
| CTGCTCCGCGACAAGTTTCC+TGG | - | chr3_4:62227440-62227459 | Msa0512480:CDS | 60.0% | |
| CTCCCGAAGTCGTTTGCACC+AGG | + | chr3_4:62227461-62227480 | None:intergenic | 60.0% | |
| ! | GGGTGTTGCACAGCAGCAAG+AGG | + | chr3_4:62228778-62228797 | None:intergenic | 60.0% |
| GAACAGCTCTGCTTCCGCGT+TGG | - | chr3_4:62228825-62228844 | Msa0512480:CDS | 60.0% | |
| CACTGACGCGTGTCCGACAC+AGG | - | chr3_4:62226243-62226262 | Msa0512480:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 62225327 | 62229163 | 62225327 | ID=Msa0512480;Name=Msa0512480 |
| chr3_4 | mRNA | 62225327 | 62229163 | 62225327 | ID=Msa0512480-mRNA-1;Parent=Msa0512480;Name=Msa0512480-mRNA-1;_AED=0.08;_eAED=0.08;_QI=111|0.87|0.88|1|1|1|9|411|511 |
| chr3_4 | exon | 62225327 | 62225854 | 62225327 | ID=Msa0512480-mRNA-1:exon:15401;Parent=Msa0512480-mRNA-1 |
| chr3_4 | exon | 62226067 | 62226186 | 62226067 | ID=Msa0512480-mRNA-1:exon:15400;Parent=Msa0512480-mRNA-1 |
| chr3_4 | exon | 62226292 | 62226390 | 62226292 | ID=Msa0512480-mRNA-1:exon:15399;Parent=Msa0512480-mRNA-1 |
| chr3_4 | exon | 62226551 | 62226653 | 62226551 | ID=Msa0512480-mRNA-1:exon:15398;Parent=Msa0512480-mRNA-1 |
| chr3_4 | exon | 62226758 | 62226861 | 62226758 | ID=Msa0512480-mRNA-1:exon:15397;Parent=Msa0512480-mRNA-1 |
| chr3_4 | exon | 62226973 | 62227152 | 62226973 | ID=Msa0512480-mRNA-1:exon:15396;Parent=Msa0512480-mRNA-1 |
| chr3_4 | exon | 62227243 | 62227512 | 62227243 | ID=Msa0512480-mRNA-1:exon:15395;Parent=Msa0512480-mRNA-1 |
| chr3_4 | exon | 62227619 | 62227915 | 62227619 | ID=Msa0512480-mRNA-1:exon:15394;Parent=Msa0512480-mRNA-1 |
| chr3_4 | exon | 62228807 | 62229163 | 62228807 | ID=Msa0512480-mRNA-1:exon:15393;Parent=Msa0512480-mRNA-1 |
| chr3_4 | five_prime_UTR | 62229053 | 62229163 | 62229053 | ID=Msa0512480-mRNA-1:five_prime_utr;Parent=Msa0512480-mRNA-1 |
| chr3_4 | CDS | 62228807 | 62229052 | 62228807 | ID=Msa0512480-mRNA-1:cds;Parent=Msa0512480-mRNA-1 |
| chr3_4 | CDS | 62227619 | 62227915 | 62227619 | ID=Msa0512480-mRNA-1:cds;Parent=Msa0512480-mRNA-1 |
| chr3_4 | CDS | 62227243 | 62227512 | 62227243 | ID=Msa0512480-mRNA-1:cds;Parent=Msa0512480-mRNA-1 |
| chr3_4 | CDS | 62226973 | 62227152 | 62226973 | ID=Msa0512480-mRNA-1:cds;Parent=Msa0512480-mRNA-1 |
| chr3_4 | CDS | 62226758 | 62226861 | 62226758 | ID=Msa0512480-mRNA-1:cds;Parent=Msa0512480-mRNA-1 |
| chr3_4 | CDS | 62226551 | 62226653 | 62226551 | ID=Msa0512480-mRNA-1:cds;Parent=Msa0512480-mRNA-1 |
| chr3_4 | CDS | 62226292 | 62226390 | 62226292 | ID=Msa0512480-mRNA-1:cds;Parent=Msa0512480-mRNA-1 |
| chr3_4 | CDS | 62226067 | 62226186 | 62226067 | ID=Msa0512480-mRNA-1:cds;Parent=Msa0512480-mRNA-1 |
| chr3_4 | CDS | 62225738 | 62225854 | 62225738 | ID=Msa0512480-mRNA-1:cds;Parent=Msa0512480-mRNA-1 |
| chr3_4 | three_prime_UTR | 62225327 | 62225737 | 62225327 | ID=Msa0512480-mRNA-1:three_prime_utr;Parent=Msa0512480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
