AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0171780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171780 MtrunA17_Chr1g0189881 96.532 894 21 2 1 894 1 884 0.0 1778
Msa0171780 MtrunA17_Chr1g0170071 22.684 313 212 8 97 404 446 733 1.52e-12 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171780 AT3G04260.1 69.518 912 218 10 17 888 9 900 0.0 1241
Msa0171780 AT1G18900.4 21.212 264 198 4 68 329 373 628 3.16e-11 67.8
Msa0171780 AT1G18900.2 21.212 264 198 4 68 329 373 628 3.16e-11 67.8
Msa0171780 AT1G18900.1 21.212 264 198 4 68 329 373 628 3.16e-11 67.8
Msa0171780 AT1G18900.3 21.212 264 198 4 68 329 373 628 3.55e-11 67.8
Msa0171780 AT3G06920.1 21.672 323 230 5 61 379 100 403 4.59e-11 67.4
Msa0171780 AT4G20090.2 21.555 283 186 4 70 318 268 548 4.61e-11 67.0
Msa0171780 AT4G20090.1 21.555 283 186 4 70 318 268 548 4.61e-11 67.0
Msa0171780 AT3G06920.2 21.672 323 230 5 61 379 114 417 4.74e-11 67.4
Msa0171780 AT3G06920.3 21.672 323 230 5 61 379 114 417 4.74e-11 67.4

Find 272 sgRNAs with CRISPR-Local

Find 626 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCACTTGCTTCTTCTTTC+TGG 0.041062 1_4:+56527380 None:intergenic
ATTTGACTTTGTTGTGAATT+TGG 0.167450 1_4:-56518598 Msa0171780:three_prime_UTR
CAATTGTATGTTTCTGTATC+AGG 0.199796 1_4:+56525047 None:intergenic
GGACATATTTGAGGCGTTTA+AGG 0.213661 1_4:-56520479 Msa0171780:CDS
GTTGAAGAAGGTGGCCTTAC+TGG 0.228055 1_4:-56521711 Msa0171780:CDS
CATGCTTGGATAATTCTTAT+TGG 0.232865 1_4:-56526298 Msa0171780:intron
CATAGTCTTGGCTATAAGTT+TGG 0.235188 1_4:-56519163 Msa0171780:CDS
GTTGTTTCCTATGCTCTTAA+TGG 0.237736 1_4:-56527201 Msa0171780:CDS
AGAAATATTGCATTGGAAAA+TGG 0.245483 1_4:+56518484 None:intergenic
AATCTCGTGGTCGGCCGCTT+TGG 0.249279 1_4:-56521302 Msa0171780:CDS
ATCTCTCTCTGCCTTGATCT+TGG 0.250220 1_4:-56518969 Msa0171780:CDS
ATCTCGTGGTCGGCCGCTTT+GGG 0.251517 1_4:-56521301 Msa0171780:CDS
TGACATGCTTGAAGCTTTAG+AGG 0.252961 1_4:-56522483 Msa0171780:CDS
AATGTTGTAAAGGCTATTTC+AGG 0.254892 1_4:+56525299 None:intergenic
TTCTTTCTGGTCCGCTTCTC+TGG 0.257169 1_4:+56527393 None:intergenic
CTTTGCAATCTTCCTCAATT+AGG 0.261134 1_4:+56526070 None:intergenic
TATGAAGGAATTGTAGCTTT+AGG 0.264884 1_4:-56521534 Msa0171780:CDS
TTCTTAGGAGAAGGCTTAAA+TGG 0.269093 1_4:-56521074 Msa0171780:CDS
TCTCTCTCTGCCTTGATCTT+GGG 0.272245 1_4:-56518968 Msa0171780:CDS
TATTGGAAACGTCGCTTCTT+AGG 0.272559 1_4:-56521089 Msa0171780:CDS
GGCTTTAATGCATTCTGTTC+AGG 0.274497 1_4:+56521447 None:intergenic
ATCCTCTTTCTTTGTACCTT+CGG 0.284296 1_4:-56522977 Msa0171780:CDS
CAGGGTGATTTCTGCTAAAC+AGG 0.287108 1_4:-56518871 Msa0171780:CDS
TACAAACATGGCAAGTTTCC+TGG 0.289374 1_4:+56518666 None:intergenic
ATGAAGGAATTGTAGCTTTA+GGG 0.297375 1_4:-56521533 Msa0171780:CDS
CCTGGTCCTAGGTCGTTTCA+TGG 0.300418 1_4:-56527228 Msa0171780:CDS
GTTGCATTGGTGAGATTGTT+TGG 0.310243 1_4:-56526391 Msa0171780:CDS
CCTTTATCCTCTCTACATCT+TGG 0.319914 1_4:+56520886 None:intergenic
TCCTAGGTCGTTTCATGGTT+TGG 0.321573 1_4:-56527223 Msa0171780:CDS
CAGAAAGTAGGCAATTAAAA+TGG 0.327312 1_4:+56525977 None:intergenic
AAGAAGATCAAGACGGAATA+TGG 0.330554 1_4:-56520766 Msa0171780:CDS
ACTTCTTCAGAAGCTTCTTA+TGG 0.332257 1_4:+56521562 None:intergenic
CAAGATTATATTGATGTTGT+AGG 0.332546 1_4:-56521002 Msa0171780:CDS
TCCTCTTTCTTTGTACCTTC+GGG 0.347813 1_4:-56522976 Msa0171780:CDS
GAAGGCTTAAATGGTGATAA+TGG 0.348591 1_4:-56521065 Msa0171780:CDS
ACATTTGAGAACATGGAATA+TGG 0.349524 1_4:-56525281 Msa0171780:CDS
TACGCATGGGTCTTAACATT+TGG 0.361720 1_4:+56524115 None:intergenic
ACGCTGGTAAAGAACATTTC+TGG 0.365600 1_4:+56521350 None:intergenic
CTCAAGGCATCTTTGTTTGA+AGG 0.368508 1_4:+56521599 None:intergenic
AATGCATGTGTAATGAGTTT+TGG 0.370623 1_4:+56527517 None:intergenic
GATTCGTTGAGGAGAGAGTT+AGG 0.373234 1_4:-56526445 Msa0171780:CDS
TGAGGAGGAGGAAGTAGAAC+AGG 0.374648 1_4:-56520937 Msa0171780:CDS
CCAAGATGTAGAGAGGATAA+AGG 0.374896 1_4:-56520886 Msa0171780:CDS
CTCAATCACTCTAACATAAT+CGG 0.375012 1_4:+56521494 None:intergenic
ACAGGAATGGGAAGTAGATT+TGG 0.377821 1_4:-56520347 Msa0171780:CDS
TCAATATAATCTTGAACATC+AGG 0.378485 1_4:+56521011 None:intergenic
CGATGATGATTGGTTTCCTT+TGG 0.382643 1_4:-56520500 Msa0171780:CDS
TATTACTCAGGTCATACAAT+TGG 0.387619 1_4:-56519281 Msa0171780:intron
CTGATACAGAAACATACAAT+TGG 0.391148 1_4:-56525046 Msa0171780:CDS
GTGTAGTACGAGAAGCTATC+AGG 0.395805 1_4:-56523067 Msa0171780:CDS
TTGCATTGGTGAGATTGTTT+GGG 0.403589 1_4:-56526390 Msa0171780:CDS
ACTTGTTCGGAACAAGCATT+TGG 0.403714 1_4:-56526163 Msa0171780:CDS
TCTAAAGGTCATTCAACTAA+AGG 0.403798 1_4:-56526367 Msa0171780:CDS
GTATACCTTAGCAGATGCTT+GGG 0.406507 1_4:-56520419 Msa0171780:CDS
GTGGCTAAAGAAAATCATAA+AGG 0.407640 1_4:-56521472 Msa0171780:CDS
AAGATTATATTGATGTTGTA+GGG 0.408658 1_4:-56521001 Msa0171780:CDS
TCAAATGATGGCATGGATGC+TGG 0.411727 1_4:-56518834 Msa0171780:CDS
CTCTCTCTGCCTTGATCTTG+GGG 0.413360 1_4:-56518967 Msa0171780:CDS
AGGGTGCTAAGGGTGGTCTC+CGG 0.413894 1_4:-56526116 Msa0171780:CDS
ATTGCTGCTGGTTTGAGTCC+TGG 0.414764 1_4:-56527246 Msa0171780:CDS
TGGCTAAAGAAAATCATAAA+GGG 0.417296 1_4:-56521471 Msa0171780:CDS
CTCAGTTTCAGATCAGACTT+TGG 0.418813 1_4:-56518895 Msa0171780:CDS
TTCCACACATCTAAGTTTAG+TGG 0.420929 1_4:+56518562 None:intergenic
GTGTCTCTGTAGGCTGTTAG+TGG 0.422094 1_4:-56523108 Msa0171780:intron
TGACTGACTGGGTTGGTTGT+TGG 0.429704 1_4:+56518523 None:intergenic
CACTTCTTCTTCCTCTTCAA+CGG 0.429858 1_4:+56521272 None:intergenic
GTACCTTCGGGCATTGTGTC+GGG 0.434022 1_4:-56522964 Msa0171780:CDS
GTGAGATTGTTTGGGTCTAA+AGG 0.436042 1_4:-56526382 Msa0171780:CDS
GCTCGAACCGGTCCGGTTCG+AGG 0.436749 1_4:+56527429 None:intergenic
TAATTGCCTACTTTCTGTGC+AGG 0.438396 1_4:-56525971 Msa0171780:intron
ATAGTCTTGGCTATAAGTTT+GGG 0.438580 1_4:-56519162 Msa0171780:CDS
CTGGTTTGAGTCCTGGTCCT+AGG 0.439993 1_4:-56527239 Msa0171780:CDS
TAATTTGAAGGGGATGTAAG+TGG 0.442112 1_4:+56527464 None:intergenic
TGATGAAGCAGATGAGGATG+AGG 0.443071 1_4:-56520955 Msa0171780:CDS
GGGAACGAAAATTCTACATA+TGG 0.444084 1_4:-56523015 Msa0171780:CDS
TTATGGAAGAGCTCATGAAC+CGG 0.444395 1_4:-56527317 Msa0171780:CDS
TCATAGGTGGTCACAGGAAT+GGG 0.445146 1_4:-56520359 Msa0171780:CDS
TTGCAAGAGGAGGCTGAACT+TGG 0.445377 1_4:-56522371 Msa0171780:CDS
TTGAGTCACGGTTCCTAGCC+CGG 0.446872 1_4:+56527298 None:intergenic
AGTTAAGCGGTTTAATTTGA+AGG 0.447280 1_4:+56527452 None:intergenic
GTTTCCTTTGGACATATTTG+AGG 0.447679 1_4:-56520488 Msa0171780:CDS
ACTAAAGGTTTAGAGATACT+TGG 0.447828 1_4:-56526352 Msa0171780:CDS
ACTTCTTCTTCCTCTTCAAC+GGG 0.449381 1_4:+56521273 None:intergenic
GTTTGAAGGAAGTCTCCATT+GGG 0.451557 1_4:+56521613 None:intergenic
TCTACATCTTGGTTCTCTAC+TGG 0.452436 1_4:+56520897 None:intergenic
ACATTTCTGGTTCCATCGAT+TGG 0.452894 1_4:+56521363 None:intergenic
GCATCCATGCCATCATTTGA+AGG 0.454328 1_4:+56518837 None:intergenic
AGCAGATGAGGATGAGGAGG+AGG 0.454688 1_4:-56520949 Msa0171780:CDS
TGGAGATCACTCTAATGCTT+TGG 0.454772 1_4:-56526046 Msa0171780:CDS
TGCTAATAAAGTGTTCTTGA+AGG 0.455076 1_4:-56526136 Msa0171780:CDS
TGTTTGAAGGAAGTCTCCAT+TGG 0.456929 1_4:+56521612 None:intergenic
CGTCAGAATCTTTCAACAGC+TGG 0.459389 1_4:+56520820 None:intergenic
ATTGAGGAAGATTGCAAAGC+TGG 0.461029 1_4:-56526066 Msa0171780:CDS
GGGTGCTAAGGGTGGTCTCC+GGG 0.461087 1_4:-56526115 Msa0171780:CDS
CGCTGAGTTGCTTGGCATGA+TGG 0.461983 1_4:-56524161 Msa0171780:CDS
CATGTTCTCAAATGTTGTAA+AGG 0.465556 1_4:+56525289 None:intergenic
TTGAGGAGAGAGTTAGGTGC+AGG 0.466086 1_4:-56526439 Msa0171780:CDS
GCAACAAAAGTTTCATGAAT+CGG 0.467606 1_4:+56526409 None:intergenic
TATATAAATCCATCAGCATC+AGG 0.468220 1_4:+56521642 None:intergenic
GCTAGGAACCGTGACTCAAC+CGG 0.468909 1_4:-56527294 Msa0171780:CDS
AATGCTTGTGAATGAATTGA+AGG 0.472351 1_4:-56521409 Msa0171780:CDS
TCCTATGCTCTTAATGGCGA+TGG 0.472426 1_4:-56527195 Msa0171780:CDS
GAAGATAGCGCTGCTCGAAC+CGG 0.473315 1_4:+56527417 None:intergenic
TGTAGAGAGGATAAAGGAAA+AGG 0.474054 1_4:-56520880 Msa0171780:CDS
ATTATGATATTCGTCATGCT+TGG 0.475108 1_4:-56526312 Msa0171780:CDS
TTTAGAGATACTTGGAGCTA+TGG 0.477423 1_4:-56526344 Msa0171780:CDS
TGAAGAACAAACCTCCTCAT+AGG 0.478258 1_4:-56520375 Msa0171780:CDS
GCTTGAAGCTTTAGAGGCTA+TGG 0.478270 1_4:-56522477 Msa0171780:CDS
GCCTTACTGGAGAGCGCAAA+CGG 0.481001 1_4:-56521698 Msa0171780:CDS
ACGAAAATTCTACATATGGA+TGG 0.481360 1_4:-56523011 Msa0171780:CDS
TACAGTTACAGTTACAGTTA+CGG 0.483414 1_4:-56527489 Msa0171780:CDS
AGGATGATGCCGATGATGAT+TGG 0.484108 1_4:-56520510 Msa0171780:CDS
TGTACCTTCGGGCATTGTGT+CGG 0.486756 1_4:-56522965 Msa0171780:CDS
AAGAGCTCATGAACCGGGCT+AGG 0.488986 1_4:-56527311 Msa0171780:CDS
TTGAGGCGTTTAAGGAAATG+AGG 0.491957 1_4:-56520471 Msa0171780:CDS
CTCATAGGTGGTCACAGGAA+TGG 0.492800 1_4:-56520360 Msa0171780:CDS
CTGAAGAAGTTGCAGTATGA+AGG 0.497200 1_4:-56521549 Msa0171780:CDS
TTCTCGTACTACACAGTACT+TGG 0.497777 1_4:+56523076 None:intergenic
GGAAGTAGAACAGGTAGAAG+AGG 0.498046 1_4:-56520928 Msa0171780:CDS
TGTATACCTTAGCAGATGCT+TGG 0.498537 1_4:-56520420 Msa0171780:CDS
GCTCTTCCATAAAACTGAAC+CGG 0.499937 1_4:+56527328 None:intergenic
GTTAAGCGGTTTAATTTGAA+GGG 0.500541 1_4:+56527453 None:intergenic
CTTTACAACATTTGAGAACA+TGG 0.500631 1_4:-56525288 Msa0171780:CDS
ACCGTTTGCGCTCTCCAGTA+AGG 0.500952 1_4:+56521697 None:intergenic
AAGTGATGAATTTGACTGAC+TGG 0.502470 1_4:+56518511 None:intergenic
AGTGTTCTTGAAGGGTGCTA+AGG 0.503999 1_4:-56526127 Msa0171780:CDS
CAAGATGTCGCTGAGTTGCT+TGG 0.504075 1_4:-56524169 Msa0171780:CDS
ATGAGATTGATTATATTGCT+AGG 0.506892 1_4:-56522346 Msa0171780:intron
GGCAATAAAAGTTATGCAGA+AGG 0.507370 1_4:-56520326 Msa0171780:intron
AGTTTATGATCTCCTAATTG+AGG 0.508876 1_4:-56526082 Msa0171780:CDS
GCTGGACTCCAATCATTTGA+AGG 0.509707 1_4:+56520838 None:intergenic
ATTACTCAGGTCATACAATT+GGG 0.512330 1_4:-56519280 Msa0171780:intron
TAGCGCTGCTCGAACCGGTC+CGG 0.512424 1_4:+56527422 None:intergenic
ATAGTGTTCTGTTGAGTGTC+GGG 0.514135 1_4:+56527567 None:intergenic
ACCGGACATTAGTGAGCTCA+TGG 0.514155 1_4:-56522403 Msa0171780:CDS
TCGTGTGTGTGTTGATGATA+AGG 0.515833 1_4:+56527606 None:intergenic
ATTGACAATCCTTCAAATGA+TGG 0.516346 1_4:-56518846 Msa0171780:CDS
TTTCAGATCAGACTTTGGAC+AGG 0.516371 1_4:-56518890 Msa0171780:CDS
CCATGAAACGACCTAGGACC+AGG 0.516577 1_4:+56527228 None:intergenic
CATCTAGTTCCCCAAGATCA+AGG 0.517160 1_4:+56518958 None:intergenic
ATGTATGATATGATTGCTGC+TGG 0.518748 1_4:-56527258 Msa0171780:CDS
AGGAAGGAAATACAGAGTAT+TGG 0.519082 1_4:-56521106 Msa0171780:CDS
CAGATGCTTGGGGATGGACA+TGG 0.521819 1_4:-56520408 Msa0171780:CDS
TACTGGAGAGCGCAAACGGT+GGG 0.522806 1_4:-56521694 Msa0171780:CDS
CGAAAATTCTACATATGGAT+GGG 0.522815 1_4:-56523010 Msa0171780:CDS
AACCGCTTAACTCCTCGAAC+CGG 0.523138 1_4:-56527441 Msa0171780:CDS
GTGTTCTTGAAGGGTGCTAA+GGG 0.523495 1_4:-56526126 Msa0171780:CDS
TGAAGCAGATGAGGATGAGG+AGG 0.524641 1_4:-56520952 Msa0171780:CDS
CCTCTAGATCCTGATGCTGA+TGG 0.527945 1_4:-56521651 Msa0171780:CDS
GGAATTGTAGCTTTAGGGGA+TGG 0.529201 1_4:-56521528 Msa0171780:CDS
CTGCAGACAACTCATAGTCT+TGG 0.531365 1_4:-56519175 Msa0171780:CDS
CTGGACTCCAATCATTTGAA+GGG 0.535035 1_4:+56520839 None:intergenic
AAACGTCGCTTCTTAGGAGA+AGG 0.535168 1_4:-56521083 Msa0171780:CDS
GGCTATTTCAGGTATTCCGC+AGG 0.537975 1_4:+56525310 None:intergenic
TGAAACAGATATGTTGAAGA+AGG 0.538831 1_4:-56521723 Msa0171780:intron
ATTGATCTCACGCATAAAGC+TGG 0.539841 1_4:-56521129 Msa0171780:CDS
TGTTGCCGTTGTGGCAGACT+TGG 0.541052 1_4:-56518931 Msa0171780:CDS
CGCTATCTTCTCCAGAGAAG+CGG 0.541700 1_4:-56527404 Msa0171780:CDS
GTCAAGAAAGCTGAAGGTAG+AGG 0.542367 1_4:+56519202 None:intergenic
CATTCCTGTGACCACCTATG+AGG 0.543065 1_4:+56520361 None:intergenic
ATCAAGACGGAATATGGTTG+AGG 0.548653 1_4:-56520760 Msa0171780:intron
GTGGCAGACTTGGAGACCAC+AGG 0.549227 1_4:-56518921 Msa0171780:CDS
TGATACAGAAACATACAATT+GGG 0.550134 1_4:-56525045 Msa0171780:CDS
GAGAACATGGAATATGGAGA+AGG 0.551432 1_4:-56525275 Msa0171780:intron
TCGTACGAGATGGAAGCTGC+TGG 0.553912 1_4:-56526018 Msa0171780:CDS
GCTAATAAAGTGTTCTTGAA+GGG 0.554329 1_4:-56526135 Msa0171780:CDS
AAGATGCCTTGAGGAGAAGA+AGG 0.554498 1_4:-56521589 Msa0171780:CDS
GTGATGTAGAGGAACTTGTT+CGG 0.554653 1_4:-56526176 Msa0171780:intron
TCCATGAGCTCACTAATGTC+CGG 0.555426 1_4:+56522402 None:intergenic
CTTTACTTGAGAACAGTCTC+CGG 0.555521 1_4:-56527347 Msa0171780:CDS
TATGGAAGAGCTCATGAACC+GGG 0.557412 1_4:-56527316 Msa0171780:CDS
CATAAACTTCATCAGTAGCC+CGG 0.562590 1_4:+56526097 None:intergenic
GTTGCAGGTGGATGAAGAGC+TGG 0.566712 1_4:-56521156 Msa0171780:intron
GATAGTGTTCTGTTGAGTGT+CGG 0.567440 1_4:+56527566 None:intergenic
TCAAGATCATTGCCCGTGGA+GGG 0.567551 1_4:+56522435 None:intergenic
AATGGAAATGCAATGGATGA+AGG 0.568839 1_4:-56521047 Msa0171780:CDS
CCTTAGCAGATGCTTGGGGA+TGG 0.569249 1_4:-56520414 Msa0171780:CDS
GCCCGAAGGTACAAAGAAAG+AGG 0.570089 1_4:+56522975 None:intergenic
TATAGCTGCGCGCAAGATCA+CGG 0.570372 1_4:+56519231 None:intergenic
CAATATAATCTTGAACATCA+GGG 0.571529 1_4:+56521012 None:intergenic
CAATCCTTCAAATGATGGCA+TGG 0.571720 1_4:-56518841 Msa0171780:CDS
AGTAGACCTGCACAGAAAGT+AGG 0.572012 1_4:+56525965 None:intergenic
ACCTCCTCATAGGTGGTCAC+AGG 0.573478 1_4:-56520365 Msa0171780:CDS
ACGGCACAATCTCCGATAGT+TGG 0.574114 1_4:+56519250 None:intergenic
GATGGAAGCTGCTGGACGAA+TGG 0.574338 1_4:-56526010 Msa0171780:CDS
TTGGGTTCCTCCCGTTGAAG+AGG 0.576094 1_4:-56521283 Msa0171780:CDS
ATTTATATATTCAAACCCAA+TGG 0.578723 1_4:-56521628 Msa0171780:CDS
AGATTATATTGATGTTGTAG+GGG 0.580630 1_4:-56521000 Msa0171780:CDS
CTTAACTCCTCGAACCGGAC+CGG 0.580909 1_4:-56527436 Msa0171780:CDS
AGTTCAGCCTCCTCTTGCAA+AGG 0.581011 1_4:+56522374 None:intergenic
GTCTTGGCTATAAGTTTGGG+AGG 0.581497 1_4:-56519159 Msa0171780:intron
ACAGAATGCATTAAAGCCTA+AGG 0.584058 1_4:-56521442 Msa0171780:CDS
CTCAAGATCATTGCCCGTGG+AGG 0.584251 1_4:+56522434 None:intergenic
TTTGGAAATTTCGTACGAGA+TGG 0.584263 1_4:-56526028 Msa0171780:CDS
TGATCTTGAGCAGAAAATAC+CGG 0.584433 1_4:-56522421 Msa0171780:CDS
TTCTTGAAGGGTGCTAAGGG+TGG 0.584585 1_4:-56526123 Msa0171780:CDS
ATGAATTTGACTGACTGGGT+TGG 0.587864 1_4:+56518516 None:intergenic
TGGTGATAATGGAAATGCAA+TGG 0.588240 1_4:-56521054 Msa0171780:CDS
TTAATGTATAGTATCAGTCC+AGG 0.588921 1_4:-56518684 Msa0171780:three_prime_UTR
AACGCCTCAAATATGTCCAA+AGG 0.589906 1_4:+56520484 None:intergenic
CAAAGGAAACCAATCATCAT+CGG 0.590127 1_4:+56520501 None:intergenic
GGTACACCTTCTTCTCCTCA+AGG 0.591446 1_4:+56521583 None:intergenic
ATGGATTGAACCTTTGCAAG+AGG 0.591732 1_4:-56522384 Msa0171780:CDS
TTAAGCGGTTTAATTTGAAG+GGG 0.591930 1_4:+56527454 None:intergenic
TCCTGTGACCACCTATGAGG+AGG 0.592541 1_4:+56520364 None:intergenic
TGAGAGTTGAGAGAGTGAAG+TGG 0.592740 1_4:+56527542 None:intergenic
CCATCAGCATCAGGATCTAG+AGG 0.596125 1_4:+56521651 None:intergenic
AACTAACCTGTCATAAGAGT+CGG 0.597204 1_4:+56525001 None:intergenic
TGAAGGAATTGTAGCTTTAG+GGG 0.598298 1_4:-56521532 Msa0171780:CDS
GCACAAGGTTTACCAATCGA+TGG 0.599603 1_4:-56521375 Msa0171780:CDS
AGAATTGTCAAGAAAGCTGA+AGG 0.601296 1_4:+56519196 None:intergenic
TTGGGAGGGACACCAACTAT+CGG 0.601421 1_4:-56519262 Msa0171780:CDS
CCATCCCCAAGCATCTGCTA+AGG 0.602394 1_4:+56520414 None:intergenic
TGGACTCCAATCATTTGAAG+GGG 0.603662 1_4:+56520840 None:intergenic
CTGCTCAAGATCATTGCCCG+TGG 0.604098 1_4:+56522431 None:intergenic
CGTTGAAGAGGAAGAAGAAG+TGG 0.604494 1_4:-56521271 Msa0171780:CDS
GAGAAACTCCGGTTGAGTCA+CGG 0.604588 1_4:+56527286 None:intergenic
TTCAGATCAGACTTTGGACA+GGG 0.605217 1_4:-56518889 Msa0171780:CDS
CACCACTAAACTTAGATGTG+TGG 0.605898 1_4:-56518564 Msa0171780:three_prime_UTR
TAACCAGAAAATCCCTCCAC+GGG 0.606115 1_4:-56522447 Msa0171780:CDS
AAACGGTGGGTGCCCCGAAG+TGG 0.606401 1_4:-56521681 Msa0171780:CDS
AGATGCAGCTGTTGCCGTTG+TGG 0.606633 1_4:-56518940 Msa0171780:CDS
TCACGCATAAAGCTGGAGGA+AGG 0.607414 1_4:-56521122 Msa0171780:CDS
CTAGAGCCGACTCTTATGAC+AGG 0.610474 1_4:-56525007 Msa0171780:intron
GAATAAATCAATCTCGTGGT+CGG 0.611091 1_4:-56521311 Msa0171780:CDS
TAGAGAACCAAGATGTAGAG+AGG 0.611802 1_4:-56520893 Msa0171780:CDS
CTTCGGGCATTGTGTCGGGA+AGG 0.612050 1_4:-56522960 Msa0171780:intron
AGATGCTTGGGGATGGACAT+GGG 0.614332 1_4:-56520407 Msa0171780:CDS
ATACATAACTTGAGAAACTC+CGG 0.614556 1_4:+56527275 None:intergenic
GATTGAACCTTTGCAAGAGG+AGG 0.617007 1_4:-56522381 Msa0171780:CDS
TCCATCGCCATTAAGAGCAT+AGG 0.618109 1_4:+56527194 None:intergenic
GTCCGGTTCGAGGAGTTAAG+CGG 0.620169 1_4:+56527439 None:intergenic
AACAGATATGTTGAAGAAGG+TGG 0.621152 1_4:-56521720 Msa0171780:intron
GCATGACAGTTCTACAAACA+TGG 0.623303 1_4:+56518654 None:intergenic
TGTAGGGGATGATGCAAAAG+AGG 0.623728 1_4:-56520985 Msa0171780:CDS
TGAGGAGAGAGTTAGGTGCA+GGG 0.625282 1_4:-56526438 Msa0171780:CDS
CTCAGGTCATACAATTGGGA+GGG 0.626997 1_4:-56519276 Msa0171780:intron
ACTCAGGTCATACAATTGGG+AGG 0.634186 1_4:-56519277 Msa0171780:intron
ATTATGTTAGAGTGATTGAG+TGG 0.634643 1_4:-56521491 Msa0171780:CDS
TTGCAGACCGCTTTATGACG+AGG 0.635470 1_4:-56518994 Msa0171780:intron
TCTTCTTCCTCTTCAACGGG+AGG 0.635806 1_4:+56521276 None:intergenic
TTATGCAGATGGATTCGTTG+AGG 0.636188 1_4:-56526456 Msa0171780:intron
TGGCAGACTTGGAGACCACA+GGG 0.638625 1_4:-56518920 Msa0171780:CDS
TGAAGATGATGAAGCAGATG+AGG 0.643572 1_4:-56520961 Msa0171780:CDS
AATATAATCTTGAACATCAG+GGG 0.644115 1_4:+56521013 None:intergenic
CAAGAAGAAGAAGATCAAGA+CGG 0.644210 1_4:-56520773 Msa0171780:CDS
TTACTGGAGAGCGCAAACGG+TGG 0.645299 1_4:-56521695 Msa0171780:CDS
AAAACAGTAGTACCGCATGA+AGG 0.646916 1_4:+56518796 None:intergenic
GGCTAAAGAAAATCATAAAG+GGG 0.647563 1_4:-56521470 Msa0171780:CDS
AGAAGAATAAATCAATCTCG+TGG 0.648152 1_4:-56521315 Msa0171780:CDS
CAAATTAAATAGGCTACCTG+CGG 0.650468 1_4:-56525326 Msa0171780:intron
GAGATGACCTCGTCATAAAG+CGG 0.653121 1_4:+56518987 None:intergenic
ATAACCAGAAAATCCCTCCA+CGG 0.655773 1_4:-56522448 Msa0171780:CDS
AGGGTGATTTCTGCTAAACA+GGG 0.660207 1_4:-56518870 Msa0171780:CDS
TAATGGCGATGGACAAGCCG+CGG 0.660353 1_4:-56527184 Msa0171780:intron
CTACATATGGATGGGAACCA+CGG 0.664930 1_4:-56523002 Msa0171780:CDS
CTTCAAACAAAGATGCCTTG+AGG 0.665499 1_4:-56521598 Msa0171780:CDS
AGTGATGAATTTGACTGACT+GGG 0.666099 1_4:+56518512 None:intergenic
TCAACGGGAGGAACCCAAAG+CGG 0.666771 1_4:+56521288 None:intergenic
AGAACAAACCTCCTCATAGG+TGG 0.666839 1_4:-56520372 Msa0171780:CDS
GATCTCACGCATAAAGCTGG+AGG 0.669561 1_4:-56521126 Msa0171780:CDS
AAGGAAGAACTAGAAGCACA+AGG 0.676402 1_4:-56521390 Msa0171780:CDS
ACCAAACCATGAAACGACCT+AGG 0.676899 1_4:+56527222 None:intergenic
GAATGCATTAAAGCCTAAGG+CGG 0.680846 1_4:-56521439 Msa0171780:CDS
CTTCCCGACACAATGCCCGA+AGG 0.685812 1_4:+56522961 None:intergenic
TATACCTTAGCAGATGCTTG+GGG 0.690390 1_4:-56520418 Msa0171780:CDS
GGGTGATTTCTGCTAAACAG+GGG 0.701939 1_4:-56518869 Msa0171780:CDS
GGTCTCCAAGTCTGCCACAA+CGG 0.702204 1_4:+56518926 None:intergenic
GTAATATTATAACCTTCATG+CGG 0.705297 1_4:-56518808 Msa0171780:exon
TTCTTGCTTTCTGAACACGC+TGG 0.712889 1_4:+56521334 None:intergenic
ATCTGAAACTGAGATCCCTG+TGG 0.727563 1_4:+56518905 None:intergenic
ACAAAGAAAGAGGATCTCCG+TGG 0.767708 1_4:+56522985 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATGATTTTATTTC+CGG - chr1_4:56521484-56521503 Msa0171780:CDS 10.0%
!!! GGTTATTTTATTATTTATTA+TGG - chr1_4:56523822-56523841 Msa0171780:intron 10.0%
!! ATTATAATAATTTCAATTTG+GGG + chr1_4:56523917-56523936 None:intergenic 10.0%
!! CATTATAATAATTTCAATTT+GGG + chr1_4:56523918-56523937 None:intergenic 10.0%
!! TCATTATAATAATTTCAATT+TGG + chr1_4:56523919-56523938 None:intergenic 10.0%
!! ATCAATATAATAATATGTAT+TGG + chr1_4:56524322-56524341 None:intergenic 10.0%
!! AAAGATATCAAAAAATTTAT+TGG + chr1_4:56527052-56527071 None:intergenic 10.0%
!! ATTAATAAATATTATGCAGA+TGG - chr1_4:56519638-56519657 Msa0171780:intron 15.0%
!! TTTCATATCACAATAAAAAT+GGG - chr1_4:56520199-56520218 Msa0171780:intron 15.0%
!! ATACAATGTTAAAAACAATA+CGG + chr1_4:56520318-56520337 None:intergenic 15.0%
!! TAATATTCTGTAGAAAATTT+AGG - chr1_4:56523246-56523265 Msa0171780:intron 15.0%
!! AATATTCTGTAGAAAATTTA+GGG - chr1_4:56523247-56523266 Msa0171780:intron 15.0%
!! ACAAATAATTTACATTACTA+TGG - chr1_4:56523459-56523478 Msa0171780:intron 15.0%
!!! ATACTTTTATTACTTATTCT+TGG - chr1_4:56523878-56523897 Msa0171780:intron 15.0%
!! TAAAATAACAATTATTAGGT+AGG + chr1_4:56524022-56524041 None:intergenic 15.0%
!! AAGGTAAAATAACAATTATT+AGG + chr1_4:56524026-56524045 None:intergenic 15.0%
!!! ATTTTCAAGCTTTTTTATTT+TGG - chr1_4:56524222-56524241 Msa0171780:intron 15.0%
!! TTATATATTAAAGATCAAGA+TGG + chr1_4:56524905-56524924 None:intergenic 15.0%
!! TGAAATATCATAAAACTAAA+GGG - chr1_4:56526069-56526088 Msa0171780:CDS 15.0%
!!! TATTTTCATCTTTTTTTTAC+TGG + chr1_4:56526214-56526233 None:intergenic 15.0%
!! TAATTGAGATATTCATAATT+TGG - chr1_4:56526798-56526817 Msa0171780:intron 15.0%
!! TAAAAATAGAAATATTGCAT+TGG + chr1_4:56527631-56527650 None:intergenic 15.0%
!!! ATTTCTATTTTGAGTATGTA+TGG - chr1_4:56519308-56519327 Msa0171780:intron 20.0%
!! AATTCCTCAATAAATAGATT+GGG + chr1_4:56520168-56520187 None:intergenic 20.0%
!! GTTTCATATCACAATAAAAA+TGG - chr1_4:56520198-56520217 Msa0171780:intron 20.0%
!! GCATATCAGTTTATTTAAAA+TGG + chr1_4:56520267-56520286 None:intergenic 20.0%
!!! TAGCCTTTTTACTTTTAAAA+TGG - chr1_4:56520381-56520400 Msa0171780:CDS 20.0%
!!! AGCCTTTTTACTTTTAAAAT+GGG - chr1_4:56520382-56520401 Msa0171780:CDS 20.0%
!! TTACTTCCTTCAAATTAAAT+AGG - chr1_4:56520769-56520788 Msa0171780:CDS 20.0%
!! GTATTTAGAAAAAAGATGTT+TGG - chr1_4:56521275-56521294 Msa0171780:CDS 20.0%
!! GTTAACATTATAATATTCCA+AGG - chr1_4:56521297-56521316 Msa0171780:CDS 20.0%
!!! AGTTTACTAAATTTTATTCC+CGG + chr1_4:56521443-56521462 None:intergenic 20.0%
!! ATTCAATTTAAGAAATCCAA+TGG + chr1_4:56521845-56521864 None:intergenic 20.0%
!! TTCTTAAATTGAATATTTCC+TGG - chr1_4:56521851-56521870 Msa0171780:intron 20.0%
!! GAATTCATTAGTATAGAATT+TGG - chr1_4:56522080-56522099 Msa0171780:intron 20.0%
!! AGCAGATAAATTGATATAAA+AGG - chr1_4:56522557-56522576 Msa0171780:intron 20.0%
!!! GTAAATTAAAGTATTCATAG+TGG + chr1_4:56522666-56522685 None:intergenic 20.0%
!!! CAAAAACTTTTTTCACAAAA+GGG + chr1_4:56522781-56522800 None:intergenic 20.0%
!! ATATTCTGTAGAAAATTTAG+GGG - chr1_4:56523248-56523267 Msa0171780:intron 20.0%
!! ATTACTATGGATAATAATCA+TGG - chr1_4:56523472-56523491 Msa0171780:intron 20.0%
!!! GAATTTTATAGTATAACACT+GGG + chr1_4:56524113-56524132 None:intergenic 20.0%
!!! AGAATTTTATAGTATAACAC+TGG + chr1_4:56524114-56524133 None:intergenic 20.0%
!!! TTTCTAGCTAAAAAAATTTC+AGG + chr1_4:56524202-56524221 None:intergenic 20.0%
!! GTCTAGTATATATTAGTTAA+GGG - chr1_4:56524286-56524305 Msa0171780:intron 20.0%
!! TCTAGTATATATTAGTTAAG+GGG - chr1_4:56524287-56524306 Msa0171780:intron 20.0%
!! ATTTATATATTCAAACCCAA+TGG - chr1_4:56524477-56524496 Msa0171780:intron 20.0%
!! ATAATGCCTAAACTTAAATA+TGG - chr1_4:56524921-56524940 Msa0171780:intron 20.0%
!! AAGATTATATTGATGTTGTA+GGG - chr1_4:56525104-56525123 Msa0171780:intron 20.0%
!! TAAAAAAAAAAAACTAGTCC+AGG + chr1_4:56525817-56525836 None:intergenic 20.0%
!!! CAGTTTTTATTTTATTCACA+TGG + chr1_4:56525930-56525949 None:intergenic 20.0%
!!! AAACTGTTTAAACTTTTTTG+TGG - chr1_4:56525944-56525963 Msa0171780:intron 20.0%
!! CTGAAATATCATAAAACTAA+AGG - chr1_4:56526068-56526087 Msa0171780:CDS 20.0%
!! ATAAGAAATACCAAATGTAA+TGG + chr1_4:56526178-56526197 None:intergenic 20.0%
!! TGCTATAATTAAGAAATAGT+CGG - chr1_4:56526422-56526441 Msa0171780:CDS 20.0%
!! GAATTTATAAATACTCTAAG+TGG - chr1_4:56526635-56526654 Msa0171780:intron 20.0%
!!! TATCAAAAAATTTATTGGCT+GGG + chr1_4:56527047-56527066 None:intergenic 20.0%
!! ATATCAAAAAATTTATTGGC+TGG + chr1_4:56527048-56527067 None:intergenic 20.0%
!!! CTTATTTTCATAAGCTCTAT+AGG - chr1_4:56519038-56519057 Msa0171780:intron 25.0%
! CTATAGGATAGTTTATGAAA+TGG - chr1_4:56519054-56519073 Msa0171780:intron 25.0%
! GTGTCAAACATATCTTATAT+TGG + chr1_4:56519088-56519107 None:intergenic 25.0%
! GAACTTATAGAAACATCTTA+TGG - chr1_4:56519192-56519211 Msa0171780:CDS 25.0%
! CTTATTTACATAAGCTCTTT+AGG - chr1_4:56519434-56519453 Msa0171780:intron 25.0%
!! TTATGTTGTTTATCCAAACA+AGG - chr1_4:56519604-56519623 Msa0171780:intron 25.0%
!! ATTCTATTTAAGTTAGTGAC+TGG - chr1_4:56519882-56519901 Msa0171780:intron 25.0%
! GAATTCCTCAATAAATAGAT+TGG + chr1_4:56520169-56520188 None:intergenic 25.0%
! CTATTTATTGAGGAATTCTA+AGG - chr1_4:56520171-56520190 Msa0171780:intron 25.0%
! TGTAGAAAGTAGAAACTATT+AGG - chr1_4:56520222-56520241 Msa0171780:intron 25.0%
!!! GCCTTTTTACTTTTAAAATG+GGG - chr1_4:56520383-56520402 Msa0171780:CDS 25.0%
! GTGATACATACATCATTATT+TGG - chr1_4:56520501-56520520 Msa0171780:CDS 25.0%
! TGTGACTGTAAAAAATGTTA+AGG - chr1_4:56520580-56520599 Msa0171780:intron 25.0%
! ACTTGAAAGAACATGTAAAA+GGG + chr1_4:56520638-56520657 None:intergenic 25.0%
! TTTCAAATTTCAATTAGCTG+TGG - chr1_4:56520681-56520700 Msa0171780:intron 25.0%
! AATTGCGTATGAATATTCTT+CGG - chr1_4:56520934-56520953 Msa0171780:CDS 25.0%
! TGATACAGAAACATACAATT+GGG - chr1_4:56521060-56521079 Msa0171780:CDS 25.0%
! ATGACAATCTTTGTTCTTTA+AGG - chr1_4:56521172-56521191 Msa0171780:intron 25.0%
! TGACAATCTTTGTTCTTTAA+GGG - chr1_4:56521173-56521192 Msa0171780:intron 25.0%
! AGTGTAACAAATTTATTCCT+AGG - chr1_4:56521209-56521228 Msa0171780:intron 25.0%
! ATTCCTTGGAATATAAAGAT+AGG - chr1_4:56521238-56521257 Msa0171780:intron 25.0%
! ATTCCTATCTTTATATTCCA+AGG + chr1_4:56521244-56521263 None:intergenic 25.0%
!! AAGATAGGAATTTTATTCCA+AGG - chr1_4:56521253-56521272 Msa0171780:intron 25.0%
!!! CATCTTTTTTCTAAATACCT+TGG + chr1_4:56521273-56521292 None:intergenic 25.0%
!!! TATTATATCCCCCATTTTTA+AGG + chr1_4:56521325-56521344 None:intergenic 25.0%
! TTAAAAATGGGGGATATAAT+AGG - chr1_4:56521324-56521343 Msa0171780:CDS 25.0%
!! AAAAGTTTTCCCAAAGAAAA+TGG + chr1_4:56521397-56521416 None:intergenic 25.0%
!! GTTTACTAAATTTTATTCCC+GGG + chr1_4:56521442-56521461 None:intergenic 25.0%
! AGAACAATTCTAAACTGTTA+GGG + chr1_4:56521540-56521559 None:intergenic 25.0%
! AAGAACAATTCTAAACTGTT+AGG + chr1_4:56521541-56521560 None:intergenic 25.0%
! AAATAATGTATCTTACGCAT+GGG + chr1_4:56522006-56522025 None:intergenic 25.0%
! TAAATAATGTATCTTACGCA+TGG + chr1_4:56522007-56522026 None:intergenic 25.0%
! CAACATTCAATATGCTAAAA+TGG + chr1_4:56522052-56522071 None:intergenic 25.0%
!!! ATAGAATTTGGCCTTTTTAT+TGG - chr1_4:56522092-56522111 Msa0171780:intron 25.0%
! AATGAATACAGCCAATAAAA+AGG + chr1_4:56522106-56522125 None:intergenic 25.0%
! CTGTATTCATTAGTATTTGT+AGG - chr1_4:56522115-56522134 Msa0171780:intron 25.0%
! TATAAAAGATATCAGCAATG+AGG - chr1_4:56522312-56522331 Msa0171780:intron 25.0%
!!! GCAAAAACTTTTTTCACAAA+AGG + chr1_4:56522782-56522801 None:intergenic 25.0%
! TGAAATCTATACATTAAAGC+AGG + chr1_4:56522916-56522935 None:intergenic 25.0%
!! AGCTGAAAGAATTATTTTCA+GGG - chr1_4:56523309-56523328 Msa0171780:intron 25.0%
! TGTAAGAAAATAGATTCTCA+AGG + chr1_4:56523418-56523437 None:intergenic 25.0%
! TATAGTAAAAAAATGTGTGC+CGG + chr1_4:56523591-56523610 None:intergenic 25.0%
!!! CACATTTTTTTACTATAGGT+AGG - chr1_4:56523594-56523613 Msa0171780:intron 25.0%
! ATGAGATTGATTATATTGCT+AGG - chr1_4:56523759-56523778 Msa0171780:intron 25.0%
!!! AGTAGTTGCTATTTTGTATT+TGG - chr1_4:56523801-56523820 Msa0171780:intron 25.0%
!!! ATTGTTATTTTACCTTGTGA+TGG - chr1_4:56524030-56524049 Msa0171780:intron 25.0%
! TAAAATTCTGTACCCAATAT+TGG - chr1_4:56524125-56524144 Msa0171780:CDS 25.0%
! TTTGCTAATAGTCCAATATT+GGG + chr1_4:56524140-56524159 None:intergenic 25.0%
!! TTTTGCTAATAGTCCAATAT+TGG + chr1_4:56524141-56524160 None:intergenic 25.0%
! ATATTGGACTATTAGCAAAA+TGG - chr1_4:56524141-56524160 Msa0171780:CDS 25.0%
! TATTGGACTATTAGCAAAAT+GGG - chr1_4:56524142-56524161 Msa0171780:CDS 25.0%
! GGTCTAGTATATATTAGTTA+AGG - chr1_4:56524285-56524304 Msa0171780:intron 25.0%
! TGGCTAAAGAAAATCATAAA+GGG - chr1_4:56524634-56524653 Msa0171780:intron 25.0%
! AGATGGCATACAAAAAAAAA+CGG + chr1_4:56524888-56524907 None:intergenic 25.0%
!! CATGAACCATATTTAAGTTT+AGG + chr1_4:56524930-56524949 None:intergenic 25.0%
! AATATAATCTTGAACATCAG+GGG + chr1_4:56525095-56525114 None:intergenic 25.0%
! CAATATAATCTTGAACATCA+GGG + chr1_4:56525096-56525115 None:intergenic 25.0%
! TCAATATAATCTTGAACATC+AGG + chr1_4:56525097-56525116 None:intergenic 25.0%
! CAAGATTATATTGATGTTGT+AGG - chr1_4:56525103-56525122 Msa0171780:intron 25.0%
! AGATTATATTGATGTTGTAG+GGG - chr1_4:56525105-56525124 Msa0171780:intron 25.0%
!!! AATCAGGATGATTTGTTTTT+TGG - chr1_4:56525431-56525450 Msa0171780:intron 25.0%
!! TTTGAAATGATTAAATGCCT+TGG - chr1_4:56525863-56525882 Msa0171780:intron 25.0%
! ATATCAGAATTTAAGAACCA+AGG + chr1_4:56525883-56525902 None:intergenic 25.0%
!!! TTTATTTTATTCACATGGAG+AGG + chr1_4:56525925-56525944 None:intergenic 25.0%
!!! GAATGAATAAACTCTGAAAT+CGG + chr1_4:56526040-56526059 None:intergenic 25.0%
! TATATTGTGAGAAAGATTCA+TGG - chr1_4:56526105-56526124 Msa0171780:CDS 25.0%
! TATCACTACTATCTATGTAT+TGG - chr1_4:56526131-56526150 Msa0171780:CDS 25.0%
! TATAGGATATCCATTACATT+TGG - chr1_4:56526165-56526184 Msa0171780:CDS 25.0%
! TCCTATTACACATTAATTCA+CGG + chr1_4:56526357-56526376 None:intergenic 25.0%
! GTAATATTATAACCTTCATG+CGG - chr1_4:56527297-56527316 Msa0171780:CDS 25.0%
! CAAATAAAAGCGAAAAACTA+GGG + chr1_4:56527492-56527511 None:intergenic 25.0%
! TCAAATAAAAGCGAAAAACT+AGG + chr1_4:56527493-56527512 None:intergenic 25.0%
!! ATTTGACTTTGTTGTGAATT+TGG - chr1_4:56527507-56527526 Msa0171780:exon 25.0%
! AGAAATATTGCATTGGAAAA+TGG + chr1_4:56527624-56527643 None:intergenic 25.0%
! AATGCATGTGTAATGAGTTT+TGG + chr1_4:56518591-56518610 None:intergenic 30.0%
TACAGTTACAGTTACAGTTA+CGG - chr1_4:56518616-56518635 Msa0171780:three_prime_UTR 30.0%
!! TTAAGCGGTTTAATTTGAAG+GGG + chr1_4:56518654-56518673 None:intergenic 30.0%
!! GTTAAGCGGTTTAATTTGAA+GGG + chr1_4:56518655-56518674 None:intergenic 30.0%
!! AGTTAAGCGGTTTAATTTGA+AGG + chr1_4:56518656-56518675 None:intergenic 30.0%
ATACATAACTTGAGAAACTC+CGG + chr1_4:56518833-56518852 None:intergenic 30.0%
AGTGAATTTAAACATTACCG+CGG + chr1_4:56518941-56518960 None:intergenic 30.0%
CAAATAGTCTCAAGTCTTTA+CGG + chr1_4:56519169-56519188 None:intergenic 30.0%
!! CTTATTTCTATAAGCTCTCT+AGG - chr1_4:56519237-56519256 Msa0171780:CDS 30.0%
GCAACAAAAGTTTCATGAAT+CGG + chr1_4:56519699-56519718 None:intergenic 30.0%
! TCATGAAACTTTTGTTGCAT+TGG - chr1_4:56519701-56519720 Msa0171780:intron 30.0%
TCTAAAGGTCATTCAACTAA+AGG - chr1_4:56519738-56519757 Msa0171780:intron 30.0%
ACTAAAGGTTTAGAGATACT+TGG - chr1_4:56519753-56519772 Msa0171780:intron 30.0%
ATTATGATATTCGTCATGCT+TGG - chr1_4:56519793-56519812 Msa0171780:intron 30.0%
CATGCTTGGATAATTCTTAT+TGG - chr1_4:56519807-56519826 Msa0171780:intron 30.0%
!! TTAAGTTAGTGACTGGTTTA+TGG - chr1_4:56519889-56519908 Msa0171780:intron 30.0%
! TGCTAATAAAGTGTTCTTGA+AGG - chr1_4:56519969-56519988 Msa0171780:intron 30.0%
! GCTAATAAAGTGTTCTTGAA+GGG - chr1_4:56519970-56519989 Msa0171780:intron 30.0%
AGTTTATGATCTCCTAATTG+AGG - chr1_4:56520023-56520042 Msa0171780:intron 30.0%
CAGAAAGTAGGCAATTAAAA+TGG + chr1_4:56520131-56520150 None:intergenic 30.0%
CTTTCCCAATCTATTTATTG+AGG - chr1_4:56520161-56520180 Msa0171780:intron 30.0%
!! GCCCCATTTTAAAAGTAAAA+AGG + chr1_4:56520387-56520406 None:intergenic 30.0%
CACTTGAAAGAACATGTAAA+AGG + chr1_4:56520639-56520658 None:intergenic 30.0%
AAACAAATTATGAGTGTGCT+TGG - chr1_4:56520706-56520725 Msa0171780:intron 30.0%
!! AGGTAGCCTATTTAATTTGA+AGG + chr1_4:56520778-56520797 None:intergenic 30.0%
! AATGTTGTAAAGGCTATTTC+AGG + chr1_4:56520809-56520828 None:intergenic 30.0%
CATGTTCTCAAATGTTGTAA+AGG + chr1_4:56520819-56520838 None:intergenic 30.0%
CTTTACAACATTTGAGAACA+TGG - chr1_4:56520817-56520836 Msa0171780:CDS 30.0%
ACATTTGAGAACATGGAATA+TGG - chr1_4:56520824-56520843 Msa0171780:CDS 30.0%
AGCAATAAGAAATAGAGAAG+TGG + chr1_4:56520864-56520883 None:intergenic 30.0%
ATTGCGTATGAATATTCTTC+GGG - chr1_4:56520935-56520954 Msa0171780:CDS 30.0%
GGCTATATCAATCTAGAAAA+GGG + chr1_4:56520970-56520989 None:intergenic 30.0%
AGGCTATATCAATCTAGAAA+AGG + chr1_4:56520971-56520990 None:intergenic 30.0%
! GTAGTTCATAATGGAGAAAT+AGG + chr1_4:56520991-56521010 None:intergenic 30.0%
! CAATTGTATGTTTCTGTATC+AGG + chr1_4:56521061-56521080 None:intergenic 30.0%
CTGATACAGAAACATACAAT+TGG - chr1_4:56521059-56521078 Msa0171780:CDS 30.0%
ATTCCAAGGAACCTTAAAAA+TGG - chr1_4:56521311-56521330 Msa0171780:CDS 30.0%
TTCCAAGGAACCTTAAAAAT+GGG - chr1_4:56521312-56521331 Msa0171780:CDS 30.0%
! TAATTTTATTCCCATCTCCA+TGG - chr1_4:56521357-56521376 Msa0171780:CDS 30.0%
! AATTTTATTCCCATCTCCAT+GGG - chr1_4:56521358-56521377 Msa0171780:CDS 30.0%
AGTAAACTTGTAACAAACGT+AGG - chr1_4:56521455-56521474 Msa0171780:CDS 30.0%
CAAGTTATATCTGTAGATTC+CGG + chr1_4:56521506-56521525 None:intergenic 30.0%
GAATATTTCCTGGATTGAAT+TGG - chr1_4:56521861-56521880 Msa0171780:intron 30.0%
! TAATCAAACTTGTTTCCGTT+TGG - chr1_4:56521902-56521921 Msa0171780:intron 30.0%
TTCAATATGCTAAAATGGTC+AGG + chr1_4:56522047-56522066 None:intergenic 30.0%
TCAAAGAGGGAATATAAACT+TGG - chr1_4:56522267-56522286 Msa0171780:intron 30.0%
CAAAGAGGGAATATAAACTT+GGG - chr1_4:56522268-56522287 Msa0171780:intron 30.0%
AAAGAGGGAATATAAACTTG+GGG - chr1_4:56522269-56522288 Msa0171780:intron 30.0%
! CTGATATCTTTTATACTCTC+TGG + chr1_4:56522307-56522326 None:intergenic 30.0%
AGACTGATATTCAATAGCTT+TGG + chr1_4:56522349-56522368 None:intergenic 30.0%
!! AGCTTCACTCAATGTTTTAA+TGG + chr1_4:56522380-56522399 None:intergenic 30.0%
!! ATTTTGCTGAATAGTCTTAG+TGG + chr1_4:56522536-56522555 None:intergenic 30.0%
ATCATAATCTGTGTGAATGT+TGG - chr1_4:56522828-56522847 Msa0171780:intron 30.0%
!!! CTTCAAAGTTTTTAAGTGCT+CGG + chr1_4:56523069-56523088 None:intergenic 30.0%
GAGCACTTAAAAACTTTGAA+GGG - chr1_4:56523068-56523087 Msa0171780:CDS 30.0%
! AGCACTTAAAAACTTTGAAG+GGG - chr1_4:56523069-56523088 Msa0171780:CDS 30.0%
ACGAAAATTCTACATATGGA+TGG - chr1_4:56523094-56523113 Msa0171780:CDS 30.0%
CGAAAATTCTACATATGGAT+GGG - chr1_4:56523095-56523114 Msa0171780:CDS 30.0%
! CAGCTGAAAGAATTATTTTC+AGG - chr1_4:56523308-56523327 Msa0171780:intron 30.0%
GGTATTACTTAGTAGTTGAA+GGG - chr1_4:56523330-56523349 Msa0171780:intron 30.0%
ATGGTAAATGTAATTGTCTG+TGG - chr1_4:56523491-56523510 Msa0171780:intron 30.0%
TATTTACGACCAAAATTGTC+TGG - chr1_4:56523548-56523567 Msa0171780:intron 30.0%
ATTTACGACCAAAATTGTCT+GGG - chr1_4:56523549-56523568 Msa0171780:intron 30.0%
!!! GGCACACATTTTTTTACTAT+AGG - chr1_4:56523590-56523609 Msa0171780:intron 30.0%
TTTATTACTTATTCTTGGCC+AGG - chr1_4:56523883-56523902 Msa0171780:intron 30.0%
!!! GTCTTTTTTAGTTTTGATCG+AGG - chr1_4:56523947-56523966 Msa0171780:intron 30.0%
AAACACAATTTACCATCACA+AGG + chr1_4:56524045-56524064 None:intergenic 30.0%
CCTGCATTAAATAGAAAGAA+AGG + chr1_4:56524251-56524270 None:intergenic 30.0%
CCTTTCTTTCTATTTAATGC+AGG - chr1_4:56524248-56524267 Msa0171780:intron 30.0%
TGAAACAGATATGTTGAAGA+AGG - chr1_4:56524382-56524401 Msa0171780:intron 30.0%
TATATAAATCCATCAGCATC+AGG + chr1_4:56524466-56524485 None:intergenic 30.0%
TATGAAGGAATTGTAGCTTT+AGG - chr1_4:56524571-56524590 Msa0171780:intron 30.0%
! ATGAAGGAATTGTAGCTTTA+GGG - chr1_4:56524572-56524591 Msa0171780:intron 30.0%
CTCAATCACTCTAACATAAT+CGG + chr1_4:56524614-56524633 None:intergenic 30.0%
ATTATGTTAGAGTGATTGAG+TGG - chr1_4:56524614-56524633 Msa0171780:intron 30.0%
GTGGCTAAAGAAAATCATAA+AGG - chr1_4:56524633-56524652 Msa0171780:intron 30.0%
GGCTAAAGAAAATCATAAAG+GGG - chr1_4:56524635-56524654 Msa0171780:intron 30.0%
AATGCTTGTGAATGAATTGA+AGG - chr1_4:56524696-56524715 Msa0171780:intron 30.0%
AGAAGAATAAATCAATCTCG+TGG - chr1_4:56524790-56524809 Msa0171780:intron 30.0%
TACAAAAAAAAACGGCATTC+AGG + chr1_4:56524880-56524899 None:intergenic 30.0%
TTAAATATGGTTCATGTTGC+AGG - chr1_4:56524934-56524953 Msa0171780:intron 30.0%
AAAAAACCCCTTCAAATGAT+TGG - chr1_4:56525259-56525278 Msa0171780:intron 30.0%
!! TCTTCTTGACTTTTTAGAAG+TGG + chr1_4:56525320-56525339 None:intergenic 30.0%
AAAGAAAAAGAAGACACCAA+GGG + chr1_4:56525380-56525399 None:intergenic 30.0%
TAAAGAAAAAGAAGACACCA+AGG + chr1_4:56525381-56525400 None:intergenic 30.0%
! CTTTTTCTTTACACATGTTC+TGG - chr1_4:56525390-56525409 Msa0171780:intron 30.0%
!!! ATTTGTTTTTTGGACCTTGA+GGG - chr1_4:56525441-56525460 Msa0171780:intron 30.0%
ATTTCAAACCAATTCAACAG+AGG + chr1_4:56525851-56525870 None:intergenic 30.0%
!! ACTATCTATGTATTGGTTAG+TGG - chr1_4:56526138-56526157 Msa0171780:CDS 30.0%
! TATTGGTTAGTGGCATATAT+AGG - chr1_4:56526148-56526167 Msa0171780:CDS 30.0%
!! TATTGTTTTACTCCAACCTT+TGG - chr1_4:56526273-56526292 Msa0171780:intron 30.0%
CCTATTACACATTAATTCAC+GGG + chr1_4:56526356-56526375 None:intergenic 30.0%
!! TGAAGATATGCTTGTTATAG+TGG - chr1_4:56526387-56526406 Msa0171780:CDS 30.0%
ACGTGTAAAGAACTAAAAGT+TGG - chr1_4:56526461-56526480 Msa0171780:intron 30.0%
AAAGAACTAAAAGTTGGCTA+TGG - chr1_4:56526467-56526486 Msa0171780:intron 30.0%
TATGGCGTAATGATTAAGTA+TGG - chr1_4:56526485-56526504 Msa0171780:intron 30.0%
ATTTCCTTCTTGATCAATGA+CGG + chr1_4:56526525-56526544 None:intergenic 30.0%
GATCAAGAAGGAAATCTAAA+AGG - chr1_4:56526530-56526549 Msa0171780:intron 30.0%
ATAATTTGGCTGTATTACTC+AGG - chr1_4:56526812-56526831 Msa0171780:intron 30.0%
TATTACTCAGGTCATACAAT+TGG - chr1_4:56526824-56526843 Msa0171780:intron 30.0%
ATTACTCAGGTCATACAATT+GGG - chr1_4:56526825-56526844 Msa0171780:intron 30.0%
! ATAGTCTTGGCTATAAGTTT+GGG - chr1_4:56526943-56526962 Msa0171780:intron 30.0%
TATGATAAGACTCTTGTAGT+TGG - chr1_4:56526986-56527005 Msa0171780:intron 30.0%
! AAAAATTTATTGGCTGGGTT+GGG + chr1_4:56527042-56527061 None:intergenic 30.0%
! AAAAAATTTATTGGCTGGGT+TGG + chr1_4:56527043-56527062 None:intergenic 30.0%
ATTGACAATCCTTCAAATGA+TGG - chr1_4:56527259-56527278 Msa0171780:CDS 30.0%
! TACTGTTTTGCATGGAAAAA+AGG - chr1_4:56527323-56527342 Msa0171780:CDS 30.0%
! ACTGTTTTGCATGGAAAAAA+GGG - chr1_4:56527324-56527343 Msa0171780:CDS 30.0%
TTAATGTATAGTATCAGTCC+AGG - chr1_4:56527421-56527440 Msa0171780:CDS 30.0%
TAATTTGAAGGGGATGTAAG+TGG + chr1_4:56518644-56518663 None:intergenic 35.0%
TTTCACTTGCTTCTTCTTTC+TGG + chr1_4:56518728-56518747 None:intergenic 35.0%
ATGTATGATATGATTGCTGC+TGG - chr1_4:56518847-56518866 Msa0171780:CDS 35.0%
! GTTGTTTCCTATGCTCTTAA+TGG - chr1_4:56518904-56518923 Msa0171780:CDS 35.0%
CGTAAAGACTTGAGACTATT+TGG - chr1_4:56519167-56519186 Msa0171780:CDS 35.0%
AACAATCTCACATGTGCTTA+CGG + chr1_4:56519360-56519379 None:intergenic 35.0%
TAAGCACATGTGAGATTGTT+TGG - chr1_4:56519360-56519379 Msa0171780:intron 35.0%
! ATCAATAACTACGCCTTGTT+TGG + chr1_4:56519620-56519639 None:intergenic 35.0%
! TTGCATTGGTGAGATTGTTT+GGG - chr1_4:56519715-56519734 Msa0171780:intron 35.0%
TTTAGAGATACTTGGAGCTA+TGG - chr1_4:56519761-56519780 Msa0171780:intron 35.0%
TGTTATCCTATGTGATGTAG+AGG - chr1_4:56519918-56519937 Msa0171780:intron 35.0%
CTTTGCAATCTTCCTCAATT+AGG + chr1_4:56520038-56520057 None:intergenic 35.0%
TTTGGAAATTTCGTACGAGA+TGG - chr1_4:56520077-56520096 Msa0171780:intron 35.0%
AAATGGGGCTGCATATATTT+AGG - chr1_4:56520398-56520417 Msa0171780:CDS 35.0%
!! TTTGGTTGGTGTTTTCAGTA+TGG + chr1_4:56520534-56520553 None:intergenic 35.0%
AAAACATAACACAAACAGCC+AGG + chr1_4:56520738-56520757 None:intergenic 35.0%
CAAATTAAATAGGCTACCTG+CGG - chr1_4:56520779-56520798 Msa0171780:CDS 35.0%
TCCATTATGAACTACATCTG+AGG - chr1_4:56520996-56521015 Msa0171780:CDS 35.0%
ACCTCAGATGTAGTTCATAA+TGG + chr1_4:56521000-56521019 None:intergenic 35.0%
AACTAACCTGTCATAAGAGT+CGG + chr1_4:56521107-56521126 None:intergenic 35.0%
! TGTTGCCTTTTGCTTATTGT+TGG + chr1_4:56521145-56521164 None:intergenic 35.0%
TTCCTAGGAATAACATTCCT+TGG - chr1_4:56521224-56521243 Msa0171780:intron 35.0%
TTCCAAGGAATGTTATTCCT+AGG + chr1_4:56521229-56521248 None:intergenic 35.0%
TCCAAGGAACCTTAAAAATG+GGG - chr1_4:56521313-56521332 Msa0171780:CDS 35.0%
! TTTAGTCCCACCATTTTCTT+TGG - chr1_4:56521384-56521403 Msa0171780:CDS 35.0%
! TTAGTCCCACCATTTTCTTT+GGG - chr1_4:56521385-56521404 Msa0171780:CDS 35.0%
! GTTTTCCCAAAGAAAATGGT+GGG + chr1_4:56521393-56521412 None:intergenic 35.0%
! AGTTTTCCCAAAGAAAATGG+TGG + chr1_4:56521394-56521413 None:intergenic 35.0%
ATTAAACTATGCCAGGTGAT+AGG + chr1_4:56521632-56521651 None:intergenic 35.0%
CTCAACTATTAAACTATGCC+AGG + chr1_4:56521639-56521658 None:intergenic 35.0%
CTGGCATAGTTTAATAGTTG+AGG - chr1_4:56521637-56521656 Msa0171780:CDS 35.0%
GTGTTGTGAATCCTGAAAAA+TGG - chr1_4:56521662-56521681 Msa0171780:CDS 35.0%
!! TGAGCAGATTTCCATTTTTC+AGG + chr1_4:56521676-56521695 None:intergenic 35.0%
!! TGGTTTGTTTAAATACCGCT+AGG - chr1_4:56521775-56521794 Msa0171780:intron 35.0%
CAACATATCCAATTCAATCC+AGG + chr1_4:56521872-56521891 None:intergenic 35.0%
AAGAAGAAACGTCATCAAAG+AGG - chr1_4:56522253-56522272 Msa0171780:intron 35.0%
AGAAGAAACGTCATCAAAGA+GGG - chr1_4:56522254-56522273 Msa0171780:intron 35.0%
ATTGAGTGAAGCTACAATAG+AGG - chr1_4:56522387-56522406 Msa0171780:CDS 35.0%
GGGCTTAAGGTTCATATTTA+TGG + chr1_4:56522413-56522432 None:intergenic 35.0%
TCTTAGCACATACAGTTGTT+GGG + chr1_4:56522433-56522452 None:intergenic 35.0%
ATAATCTGTGTGAATGTTGG+TGG - chr1_4:56522831-56522850 Msa0171780:intron 35.0%
ATTTAAATCCAGAAGCCTTG+TGG - chr1_4:56522887-56522906 Msa0171780:intron 35.0%
CAAAGTAATCTCCTTGTAGA+AGG + chr1_4:56522948-56522967 None:intergenic 35.0%
CGAGCACTTAAAAACTTTGA+AGG - chr1_4:56523067-56523086 Msa0171780:CDS 35.0%
! GCACTTAAAAACTTTGAAGG+GGG - chr1_4:56523070-56523089 Msa0171780:CDS 35.0%
GGGAACGAAAATTCTACATA+TGG - chr1_4:56523090-56523109 Msa0171780:CDS 35.0%
ATCCTCTTTCTTTGTACCTT+CGG - chr1_4:56523128-56523147 Msa0171780:intron 35.0%
TAGAAAATTTAGGGGATCTG+AGG - chr1_4:56523256-56523275 Msa0171780:intron 35.0%
GGGTATTACTTAGTAGTTGA+AGG - chr1_4:56523329-56523348 Msa0171780:intron 35.0%
CATGATTCATCATGTGTAGA+AGG - chr1_4:56523366-56523385 Msa0171780:intron 35.0%
! CTTACATTTTGTTGCTCTTG+TGG - chr1_4:56523432-56523451 Msa0171780:intron 35.0%
!! AAAGCATTCCCAGACAATTT+TGG + chr1_4:56523560-56523579 None:intergenic 35.0%
TGATCTTGAGCAGAAAATAC+CGG - chr1_4:56523684-56523703 Msa0171780:intron 35.0%
AACATTAGTGACACTACTCT+TGG + chr1_4:56523999-56524018 None:intergenic 35.0%
TCAGACCATTACTTGGAATT+TGG + chr1_4:56524172-56524191 None:intergenic 35.0%
AGTTTCTTCAGACCATTACT+TGG + chr1_4:56524179-56524198 None:intergenic 35.0%
AACAGATATGTTGAAGAAGG+TGG - chr1_4:56524385-56524404 Msa0171780:intron 35.0%
ACTTCTTCAGAAGCTTCTTA+TGG + chr1_4:56524546-56524565 None:intergenic 35.0%
!! TGAAGGAATTGTAGCTTTAG+GGG - chr1_4:56524573-56524592 Msa0171780:intron 35.0%
ACAGAATGCATTAAAGCCTA+AGG - chr1_4:56524663-56524682 Msa0171780:intron 35.0%
GAATAAATCAATCTCGTGGT+CGG - chr1_4:56524794-56524813 Msa0171780:intron 35.0%
AGGAAGGAAATACAGAGTAT+TGG - chr1_4:56524999-56525018 Msa0171780:intron 35.0%
TTCTTAGGAGAAGGCTTAAA+TGG - chr1_4:56525031-56525050 Msa0171780:CDS 35.0%
GAAGGCTTAAATGGTGATAA+TGG - chr1_4:56525040-56525059 Msa0171780:CDS 35.0%
!! TGGTGATAATGGAAATGCAA+TGG - chr1_4:56525051-56525070 Msa0171780:CDS 35.0%
AATGGAAATGCAATGGATGA+AGG - chr1_4:56525058-56525077 Msa0171780:CDS 35.0%
TGTAGAGAGGATAAAGGAAA+AGG - chr1_4:56525225-56525244 Msa0171780:intron 35.0%
CAAGAAGAAGAAGATCAAGA+CGG - chr1_4:56525332-56525351 Msa0171780:intron 35.0%
AAGAAGATCAAGACGGAATA+TGG - chr1_4:56525339-56525358 Msa0171780:intron 35.0%
TTCTTTACACATGTTCTGGT+TGG - chr1_4:56525394-56525413 Msa0171780:intron 35.0%
!!! GATTTGTTTTTTGGACCTTG+AGG - chr1_4:56525440-56525459 Msa0171780:intron 35.0%
TATCGTGAAATTCAAGCTCA+AGG + chr1_4:56525498-56525517 None:intergenic 35.0%
! ACCTAAAGTTGTTTCCTTAC+AGG - chr1_4:56525575-56525594 Msa0171780:intron 35.0%
TCCTGTAAGGAAACAACTTT+AGG + chr1_4:56525579-56525598 None:intergenic 35.0%
CAAAGGAAACCAATCATCAT+CGG + chr1_4:56525607-56525626 None:intergenic 35.0%
GTTTCCTTTGGACATATTTG+AGG - chr1_4:56525617-56525636 Msa0171780:intron 35.0%
GGCAATAAAAGTTATGCAGA+AGG - chr1_4:56525779-56525798 Msa0171780:intron 35.0%
AAACTTCACTCAAACACTCA+CGG + chr1_4:56525981-56526000 None:intergenic 35.0%
! TAACTTTTTGCTCAGTCCAA+AGG + chr1_4:56526292-56526311 None:intergenic 35.0%
CCCGTGAATTAATGTGTAAT+AGG - chr1_4:56526353-56526372 Msa0171780:CDS 35.0%
! TAAGTATGGTGATAATGCAG+CGG - chr1_4:56526499-56526518 Msa0171780:intron 35.0%
AGATTACACTATGCTTGAAC+AGG + chr1_4:56526742-56526761 None:intergenic 35.0%
AGAATTGTCAAGAAAGCTGA+AGG + chr1_4:56526912-56526931 None:intergenic 35.0%
! CATAGTCTTGGCTATAAGTT+TGG - chr1_4:56526942-56526961 Msa0171780:intron 35.0%
TTCCACACATCTAAGTTTAG+TGG + chr1_4:56527546-56527565 None:intergenic 35.0%
AGTGATGAATTTGACTGACT+GGG + chr1_4:56527596-56527615 None:intergenic 35.0%
AAGTGATGAATTTGACTGAC+TGG + chr1_4:56527597-56527616 None:intergenic 35.0%
!! TCGTGTGTGTGTTGATGATA+AGG + chr1_4:56518502-56518521 None:intergenic 40.0%
TGTCGGGAGAAAAAACAAAG+TGG + chr1_4:56518525-56518544 None:intergenic 40.0%
ATAGTGTTCTGTTGAGTGTC+GGG + chr1_4:56518541-56518560 None:intergenic 40.0%
GATAGTGTTCTGTTGAGTGT+CGG + chr1_4:56518542-56518561 None:intergenic 40.0%
CTTTACTTGAGAACAGTCTC+CGG - chr1_4:56518758-56518777 Msa0171780:three_prime_UTR 40.0%
GCTCTTCCATAAAACTGAAC+CGG + chr1_4:56518780-56518799 None:intergenic 40.0%
TTATGGAAGAGCTCATGAAC+CGG - chr1_4:56518788-56518807 Msa0171780:three_prime_UTR 40.0%
AGCTTACTTGTGAGACTCTT+TGG - chr1_4:56518968-56518987 Msa0171780:CDS 40.0%
AGCTAGCTGAAAACAGCTTA+TGG + chr1_4:56519416-56519435 None:intergenic 40.0%
! TTATGCAGATGGATTCGTTG+AGG - chr1_4:56519649-56519668 Msa0171780:intron 40.0%
! GTTGCATTGGTGAGATTGTT+TGG - chr1_4:56519714-56519733 Msa0171780:intron 40.0%
GTGAGATTGTTTGGGTCTAA+AGG - chr1_4:56519723-56519742 Msa0171780:intron 40.0%
CAAGTTCCTCTACATCACAT+AGG + chr1_4:56519927-56519946 None:intergenic 40.0%
! GTGATGTAGAGGAACTTGTT+CGG - chr1_4:56519929-56519948 Msa0171780:intron 40.0%
ACTTGTTCGGAACAAGCATT+TGG - chr1_4:56519942-56519961 Msa0171780:intron 40.0%
CATAAACTTCATCAGTAGCC+CGG + chr1_4:56520011-56520030 None:intergenic 40.0%
ATTGAGGAAGATTGCAAAGC+TGG - chr1_4:56520039-56520058 Msa0171780:intron 40.0%
TGGAGATCACTCTAATGCTT+TGG - chr1_4:56520059-56520078 Msa0171780:intron 40.0%
TAATTGCCTACTTTCTGTGC+AGG - chr1_4:56520134-56520153 Msa0171780:intron 40.0%
GTCTCTAGTCGCAAATGTAA+TGG - chr1_4:56520341-56520360 Msa0171780:CDS 40.0%
CAATCCATGAAGCAAGGATT+TGG + chr1_4:56520552-56520571 None:intergenic 40.0%
! AATCCTTGCTTCATGGATTG+TGG - chr1_4:56520552-56520571 Msa0171780:intron 40.0%
AAACCACAATCCATGAAGCA+AGG + chr1_4:56520558-56520577 None:intergenic 40.0%
GAGAACATGGAATATGGAGA+AGG - chr1_4:56520830-56520849 Msa0171780:CDS 40.0%
! CTTTTGCTTATTGTTGGCCA+TGG + chr1_4:56521139-56521158 None:intergenic 40.0%
CATGGCCAACAATAAGCAAA+AGG - chr1_4:56521137-56521156 Msa0171780:CDS 40.0%
CCAAGGAACCTTAAAAATGG+GGG - chr1_4:56521314-56521333 Msa0171780:CDS 40.0%
ACTAAAGTTCCCATGGAGAT+GGG + chr1_4:56521370-56521389 None:intergenic 40.0%
! GGGAAAACTTTTCTATTCCC+AGG - chr1_4:56521405-56521424 Msa0171780:CDS 40.0%
! TCCCAGGAACATTTTATACC+CGG - chr1_4:56521421-56521440 Msa0171780:CDS 40.0%
TCAGAATCAAACTCCAAACG+TGG + chr1_4:56521607-56521626 None:intergenic 40.0%
GAACACTTTGTGCTAAACTG+TGG - chr1_4:56521744-56521763 Msa0171780:intron 40.0%
CTCAACACAGTGTTCTTGAA+CGG + chr1_4:56521818-56521837 None:intergenic 40.0%
CTTGAACTCTACAAGCCAAA+CGG + chr1_4:56521920-56521939 None:intergenic 40.0%
TACGCATGGGTCTTAACATT+TGG + chr1_4:56521993-56522012 None:intergenic 40.0%
!! TGCAATCTGTTGCTTTGTGA+TGG + chr1_4:56522202-56522221 None:intergenic 40.0%
AGGGAATATAAACTTGGGGA+AGG - chr1_4:56522273-56522292 Msa0171780:intron 40.0%
ACATACAGTTGTTGGGCTTA+AGG + chr1_4:56522426-56522445 None:intergenic 40.0%
CTCTTAGCACATACAGTTGT+TGG + chr1_4:56522434-56522453 None:intergenic 40.0%
! GAGGAATGCTCACATTTTCA+AGG + chr1_4:56522460-56522479 None:intergenic 40.0%
TGTGGAATGTCTAGTTAGAG+AGG + chr1_4:56522479-56522498 None:intergenic 40.0%
TCTCTAACTAGACATTCCAC+AGG - chr1_4:56522478-56522497 Msa0171780:CDS 40.0%
CTCTAACTAGACATTCCACA+GGG - chr1_4:56522479-56522498 Msa0171780:CDS 40.0%
CAGTGATACTTCCTTCTACA+AGG - chr1_4:56522934-56522953 Msa0171780:intron 40.0%
TTCTCGTACTACACAGTACT+TGG + chr1_4:56523032-56523051 None:intergenic 40.0%
TCCTCTTTCTTTGTACCTTC+GGG - chr1_4:56523129-56523148 Msa0171780:intron 40.0%
! TCTGAGGCATGCATTCTATA+AGG - chr1_4:56523272-56523291 Msa0171780:intron 40.0%
! TGACATGCTTGAAGCTTTAG+AGG - chr1_4:56523622-56523641 Msa0171780:intron 40.0%
!!! AGGGATTTTCTGGTTATCGT+TGG + chr1_4:56523654-56523673 None:intergenic 40.0%
ATAACCAGAAAATCCCTCCA+CGG - chr1_4:56523657-56523676 Msa0171780:intron 40.0%
! ATGGATTGAACCTTTGCAAG+AGG - chr1_4:56523721-56523740 Msa0171780:intron 40.0%
GCACTTTCACATTAATGTCC+AGG - chr1_4:56524070-56524089 Msa0171780:intron 40.0%
AGTATAACACTGGGTCTAGT+GGG + chr1_4:56524104-56524123 None:intergenic 40.0%
TAGTATAACACTGGGTCTAG+TGG + chr1_4:56524105-56524124 None:intergenic 40.0%
GCAGACCAAATTCCAAGTAA+TGG - chr1_4:56524164-56524183 Msa0171780:CDS 40.0%
!!! TAGAGGTGTTTTACCACTTC+GGG + chr1_4:56524440-56524459 None:intergenic 40.0%
!!! CTAGAGGTGTTTTACCACTT+CGG + chr1_4:56524441-56524460 None:intergenic 40.0%
GTTTGAAGGAAGTCTCCATT+GGG + chr1_4:56524495-56524514 None:intergenic 40.0%
TGTTTGAAGGAAGTCTCCAT+TGG + chr1_4:56524496-56524515 None:intergenic 40.0%
! CTCAAGGCATCTTTGTTTGA+AGG + chr1_4:56524509-56524528 None:intergenic 40.0%
CTTCAAACAAAGATGCCTTG+AGG - chr1_4:56524507-56524526 Msa0171780:intron 40.0%
CTGAAGAAGTTGCAGTATGA+AGG - chr1_4:56524556-56524575 Msa0171780:intron 40.0%
! GGCTTTAATGCATTCTGTTC+AGG + chr1_4:56524661-56524680 None:intergenic 40.0%
GAATGCATTAAAGCCTAAGG+CGG - chr1_4:56524666-56524685 Msa0171780:intron 40.0%
! AAGGAAGAACTAGAAGCACA+AGG - chr1_4:56524715-56524734 Msa0171780:intron 40.0%
!! ACATTTCTGGTTCCATCGAT+TGG + chr1_4:56524745-56524764 None:intergenic 40.0%
ACGCTGGTAAAGAACATTTC+TGG + chr1_4:56524758-56524777 None:intergenic 40.0%
ACTTCTTCTTCCTCTTCAAC+GGG + chr1_4:56524835-56524854 None:intergenic 40.0%
CACTTCTTCTTCCTCTTCAA+CGG + chr1_4:56524836-56524855 None:intergenic 40.0%
AATATGGTTCATGTTGCAGG+TGG - chr1_4:56524937-56524956 Msa0171780:intron 40.0%
ATTGATCTCACGCATAAAGC+TGG - chr1_4:56524976-56524995 Msa0171780:intron 40.0%
TATTGGAAACGTCGCTTCTT+AGG - chr1_4:56525016-56525035 Msa0171780:CDS 40.0%
TGAAGATGATGAAGCAGATG+AGG - chr1_4:56525144-56525163 Msa0171780:intron 40.0%
! TCTACATCTTGGTTCTCTAC+TGG + chr1_4:56525211-56525230 None:intergenic 40.0%
TAGAGAACCAAGATGTAGAG+AGG - chr1_4:56525212-56525231 Msa0171780:intron 40.0%
CCTTTATCCTCTCTACATCT+TGG + chr1_4:56525222-56525241 None:intergenic 40.0%
CCAAGATGTAGAGAGGATAA+AGG - chr1_4:56525219-56525238 Msa0171780:intron 40.0%
TGGACTCCAATCATTTGAAG+GGG + chr1_4:56525268-56525287 None:intergenic 40.0%
CTGGACTCCAATCATTTGAA+GGG + chr1_4:56525269-56525288 None:intergenic 40.0%
!! GACTTTTTAGAAGTGGCAGA+GGG + chr1_4:56525313-56525332 None:intergenic 40.0%
!! TGACTTTTTAGAAGTGGCAG+AGG + chr1_4:56525314-56525333 None:intergenic 40.0%
ATCAAGACGGAATATGGTTG+AGG - chr1_4:56525345-56525364 Msa0171780:intron 40.0%
GTTGAGGTATGATAATCCCT+TGG - chr1_4:56525361-56525380 Msa0171780:intron 40.0%
! TTACACATGTTCTGGTTGGT+TGG - chr1_4:56525398-56525417 Msa0171780:intron 40.0%
! TACACATGTTCTGGTTGGTT+GGG - chr1_4:56525399-56525418 Msa0171780:intron 40.0%
! ATGAAAGGCTGAGTCTGTTT+TGG - chr1_4:56525471-56525490 Msa0171780:intron 40.0%
!! CGATGATGATTGGTTTCCTT+TGG - chr1_4:56525605-56525624 Msa0171780:intron 40.0%
AACGCCTCAAATATGTCCAA+AGG + chr1_4:56525624-56525643 None:intergenic 40.0%
! GGACATATTTGAGGCGTTTA+AGG - chr1_4:56525626-56525645 Msa0171780:intron 40.0%
! TTGAGGCGTTTAAGGAAATG+AGG - chr1_4:56525634-56525653 Msa0171780:intron 40.0%
TGTATACCTTAGCAGATGCT+TGG - chr1_4:56525685-56525704 Msa0171780:intron 40.0%
GTATACCTTAGCAGATGCTT+GGG - chr1_4:56525686-56525705 Msa0171780:intron 40.0%
TATACCTTAGCAGATGCTTG+GGG - chr1_4:56525687-56525706 Msa0171780:intron 40.0%
TGAAGAACAAACCTCCTCAT+AGG - chr1_4:56525730-56525749 Msa0171780:intron 40.0%
ACAGGAATGGGAAGTAGATT+TGG - chr1_4:56525758-56525777 Msa0171780:intron 40.0%
AGAAGGCAAGTAACTTAACC+TGG - chr1_4:56525796-56525815 Msa0171780:intron 40.0%
CAAGCTTTCCTCTGTTGAAT+TGG - chr1_4:56525840-56525859 Msa0171780:intron 40.0%
! TTTTTGCTCAGTCCAAAGGT+TGG + chr1_4:56526288-56526307 None:intergenic 40.0%
GTGTTATCAGCTACTCTAGA+AGG - chr1_4:56526587-56526606 Msa0171780:intron 40.0%
ATAAAGCGGTCTGCAACATA+GGG + chr1_4:56527107-56527126 None:intergenic 40.0%
CTCAGTTTCAGATCAGACTT+TGG - chr1_4:56527210-56527229 Msa0171780:CDS 40.0%
TTTCAGATCAGACTTTGGAC+AGG - chr1_4:56527215-56527234 Msa0171780:CDS 40.0%
TTCAGATCAGACTTTGGACA+GGG - chr1_4:56527216-56527235 Msa0171780:CDS 40.0%
AGGGTGATTTCTGCTAAACA+GGG - chr1_4:56527235-56527254 Msa0171780:CDS 40.0%
CAATCCTTCAAATGATGGCA+TGG - chr1_4:56527264-56527283 Msa0171780:CDS 40.0%
AAAACAGTAGTACCGCATGA+AGG + chr1_4:56527312-56527331 None:intergenic 40.0%
TTTGCATGGAAAAAAGGGAG+TGG - chr1_4:56527329-56527348 Msa0171780:CDS 40.0%
TACAAACATGGCAAGTTTCC+TGG + chr1_4:56527442-56527461 None:intergenic 40.0%
GCATGACAGTTCTACAAACA+TGG + chr1_4:56527454-56527473 None:intergenic 40.0%
AAAAGCGAAAAACTAGGGAG+AGG + chr1_4:56527487-56527506 None:intergenic 40.0%
CACCACTAAACTTAGATGTG+TGG - chr1_4:56527541-56527560 Msa0171780:five_prime_UTR 40.0%
ATGAATTTGACTGACTGGGT+TGG + chr1_4:56527592-56527611 None:intergenic 40.0%
TGAGAGTTGAGAGAGTGAAG+TGG + chr1_4:56518566-56518585 None:intergenic 45.0%
! CAGTCTCCGGTTCAGTTTTA+TGG - chr1_4:56518771-56518790 Msa0171780:three_prime_UTR 45.0%
TATGGAAGAGCTCATGAACC+GGG - chr1_4:56518789-56518808 Msa0171780:three_prime_UTR 45.0%
TCCTAGGTCGTTTCATGGTT+TGG - chr1_4:56518882-56518901 Msa0171780:CDS 45.0%
ACCAAACCATGAAACGACCT+AGG + chr1_4:56518886-56518905 None:intergenic 45.0%
TCCTATGCTCTTAATGGCGA+TGG - chr1_4:56518910-56518929 Msa0171780:CDS 45.0%
! TCCATCGCCATTAAGAGCAT+AGG + chr1_4:56518914-56518933 None:intergenic 45.0%
GATTCGTTGAGGAGAGAGTT+AGG - chr1_4:56519660-56519679 Msa0171780:intron 45.0%
ATTCCACTCTCAGCTGATGA+TGG - chr1_4:56519855-56519874 Msa0171780:intron 45.0%
AAACCATCATCAGCTGAGAG+TGG + chr1_4:56519861-56519880 None:intergenic 45.0%
!! AGTGTTCTTGAAGGGTGCTA+AGG - chr1_4:56519978-56519997 Msa0171780:intron 45.0%
!! GTGTTCTTGAAGGGTGCTAA+GGG - chr1_4:56519979-56519998 Msa0171780:intron 45.0%
AGTAGACCTGCACAGAAAGT+AGG + chr1_4:56520143-56520162 None:intergenic 45.0%
! CCATGAAGCAAGGATTTGGT+TGG + chr1_4:56520548-56520567 None:intergenic 45.0%
CCAACCAAATCCTTGCTTCA+TGG - chr1_4:56520545-56520564 Msa0171780:intron 45.0%
!!! CCCCCATTTTTAAGGTTCCT+TGG + chr1_4:56521317-56521336 None:intergenic 45.0%
GACTAAAGTTCCCATGGAGA+TGG + chr1_4:56521371-56521390 None:intergenic 45.0%
CCCGGGTATAAAATGTTCCT+GGG + chr1_4:56521425-56521444 None:intergenic 45.0%
! CCCAGGAACATTTTATACCC+GGG - chr1_4:56521422-56521441 Msa0171780:CDS 45.0%
TCCCGGGTATAAAATGTTCC+TGG + chr1_4:56521426-56521445 None:intergenic 45.0%
!! GTATCTCTAGAGTCCACGTT+TGG - chr1_4:56521591-56521610 Msa0171780:CDS 45.0%
TGATTCTGACTCCTATCACC+TGG - chr1_4:56521618-56521637 Msa0171780:CDS 45.0%
GCTAAACTGTGGAACAACAG+TGG - chr1_4:56521755-56521774 Msa0171780:intron 45.0%
CGTTCAAGAACACTGTGTTG+AGG - chr1_4:56521816-56521835 Msa0171780:intron 45.0%
! GTCTTTGTTTGGTTACCCTG+TGG + chr1_4:56522497-56522516 None:intergenic 45.0%
! ATAGTCTTAGTGGCAGACTG+TGG + chr1_4:56522526-56522545 None:intergenic 45.0%
GTATTCATAGTGGCAGACTG+TGG + chr1_4:56522656-56522675 None:intergenic 45.0%
! ATCTGTGTGAATGTTGGTGG+TGG - chr1_4:56522834-56522853 Msa0171780:intron 45.0%
!! TCTGTGTGAATGTTGGTGGT+GGG - chr1_4:56522835-56522854 Msa0171780:intron 45.0%
CATTAAAGCAGGACACCACA+AGG + chr1_4:56522905-56522924 None:intergenic 45.0%
CTAGTGACTAAGTAACCCTG+TGG - chr1_4:56522970-56522989 Msa0171780:CDS 45.0%
GTGTAGTACGAGAAGCTATC+AGG - chr1_4:56523038-56523057 Msa0171780:CDS 45.0%
CTACATATGGATGGGAACCA+CGG - chr1_4:56523103-56523122 Msa0171780:intron 45.0%
ACAAAGAAAGAGGATCTCCG+TGG + chr1_4:56523123-56523142 None:intergenic 45.0%
!! GCTTGAAGCTTTAGAGGCTA+TGG - chr1_4:56523628-56523647 Msa0171780:intron 45.0%
TAACCAGAAAATCCCTCCAC+GGG - chr1_4:56523658-56523677 Msa0171780:intron 45.0%
TCCATGAGCTCACTAATGTC+CGG + chr1_4:56523706-56523725 None:intergenic 45.0%
GATTGAACCTTTGCAAGAGG+AGG - chr1_4:56523724-56523743 Msa0171780:intron 45.0%
! CAATTTGGGGTTTAGTGACC+TGG + chr1_4:56523904-56523923 None:intergenic 45.0%
!!! AGAGGTGTTTTACCACTTCG+GGG + chr1_4:56524439-56524458 None:intergenic 45.0%
AAGATGCCTTGAGGAGAAGA+AGG - chr1_4:56524516-56524535 Msa0171780:intron 45.0%
!! GGAATTGTAGCTTTAGGGGA+TGG - chr1_4:56524577-56524596 Msa0171780:intron 45.0%
! AGCATTTTACTAGCCGCCTT+AGG + chr1_4:56524682-56524701 None:intergenic 45.0%
GCACAAGGTTTACCAATCGA+TGG - chr1_4:56524730-56524749 Msa0171780:intron 45.0%
TTCTTGCTTTCTGAACACGC+TGG + chr1_4:56524774-56524793 None:intergenic 45.0%
CGTTGAAGAGGAAGAAGAAG+TGG - chr1_4:56524834-56524853 Msa0171780:intron 45.0%
AAACGTCGCTTCTTAGGAGA+AGG - chr1_4:56525022-56525041 Msa0171780:CDS 45.0%
TGTAGGGGATGATGCAAAAG+AGG - chr1_4:56525120-56525139 Msa0171780:intron 45.0%
TGATGAAGCAGATGAGGATG+AGG - chr1_4:56525150-56525169 Msa0171780:intron 45.0%
GGAAGTAGAACAGGTAGAAG+AGG - chr1_4:56525177-56525196 Msa0171780:intron 45.0%
GCTGGACTCCAATCATTTGA+AGG + chr1_4:56525270-56525289 None:intergenic 45.0%
CGTCAGAATCTTTCAACAGC+TGG + chr1_4:56525288-56525307 None:intergenic 45.0%
! ACACATGTTCTGGTTGGTTG+GGG - chr1_4:56525400-56525419 Msa0171780:intron 45.0%
CTTTCATGCATGATCCCTCA+AGG + chr1_4:56525458-56525477 None:intergenic 45.0%
CTTGAGGGATCATGCATGAA+AGG - chr1_4:56525456-56525475 Msa0171780:intron 45.0%
ATCATCGGCATCATCCTGTA+AGG + chr1_4:56525592-56525611 None:intergenic 45.0%
AGGATGATGCCGATGATGAT+TGG - chr1_4:56525595-56525614 Msa0171780:intron 45.0%
AGAACAAACCTCCTCATAGG+TGG - chr1_4:56525733-56525752 Msa0171780:intron 45.0%
TCATAGGTGGTCACAGGAAT+GGG - chr1_4:56525746-56525765 Msa0171780:intron 45.0%
ACTCAGGTCATACAATTGGG+AGG - chr1_4:56526828-56526847 Msa0171780:intron 45.0%
CTCAGGTCATACAATTGGGA+GGG - chr1_4:56526829-56526848 Msa0171780:intron 45.0%
GTCAAGAAAGCTGAAGGTAG+AGG + chr1_4:56526906-56526925 None:intergenic 45.0%
CTGCAGACAACTCATAGTCT+TGG - chr1_4:56526930-56526949 Msa0171780:intron 45.0%
GTCTTGGCTATAAGTTTGGG+AGG - chr1_4:56526946-56526965 Msa0171780:intron 45.0%
! TTATTGGCTGGGTTGGGTAA+CGG + chr1_4:56527036-56527055 None:intergenic 45.0%
! AAACAAGGGAAAGCATGAGC+TGG + chr1_4:56527083-56527102 None:intergenic 45.0%
CTGCAACATAGGGGAAACAA+GGG + chr1_4:56527097-56527116 None:intergenic 45.0%
TCTGCAACATAGGGGAAACA+AGG + chr1_4:56527098-56527117 None:intergenic 45.0%
TAAAGCGGTCTGCAACATAG+GGG + chr1_4:56527106-56527125 None:intergenic 45.0%
CATAAAGCGGTCTGCAACAT+AGG + chr1_4:56527108-56527127 None:intergenic 45.0%
GAGATGACCTCGTCATAAAG+CGG + chr1_4:56527121-56527140 None:intergenic 45.0%
ATCTCTCTCTGCCTTGATCT+TGG - chr1_4:56527136-56527155 Msa0171780:intron 45.0%
TCTCTCTCTGCCTTGATCTT+GGG - chr1_4:56527137-56527156 Msa0171780:intron 45.0%
! CATCTAGTTCCCCAAGATCA+AGG + chr1_4:56527150-56527169 None:intergenic 45.0%
! ATCTGAAACTGAGATCCCTG+TGG + chr1_4:56527203-56527222 None:intergenic 45.0%
CAGGGTGATTTCTGCTAAAC+AGG - chr1_4:56527234-56527253 Msa0171780:CDS 45.0%
GGGTGATTTCTGCTAAACAG+GGG - chr1_4:56527236-56527255 Msa0171780:CDS 45.0%
GCATCCATGCCATCATTTGA+AGG + chr1_4:56527271-56527290 None:intergenic 45.0%
TCAAATGATGGCATGGATGC+TGG - chr1_4:56527271-56527290 Msa0171780:CDS 45.0%
! TGCGGTACTACTGTTTTGCA+TGG - chr1_4:56527315-56527334 Msa0171780:CDS 45.0%
!!! TTATTTTAAATACTTTTTTA+TGG - chr1_4:56522739-56522758 Msa0171780:intron 5.0%
AACCGCTTAACTCCTCGAAC+CGG - chr1_4:56518664-56518683 Msa0171780:three_prime_UTR 50.0%
CGCTATCTTCTCCAGAGAAG+CGG - chr1_4:56518701-56518720 Msa0171780:three_prime_UTR 50.0%
! TTCTTTCTGGTCCGCTTCTC+TGG + chr1_4:56518715-56518734 None:intergenic 50.0%
GAGAAACTCCGGTTGAGTCA+CGG + chr1_4:56518822-56518841 None:intergenic 50.0%
!! ATTGCTGCTGGTTTGAGTCC+TGG - chr1_4:56518859-56518878 Msa0171780:CDS 50.0%
TTGAGGAGAGAGTTAGGTGC+AGG - chr1_4:56519666-56519685 Msa0171780:intron 50.0%
TGAGGAGAGAGTTAGGTGCA+GGG - chr1_4:56519667-56519686 Msa0171780:intron 50.0%
!! TTCTTGAAGGGTGCTAAGGG+TGG - chr1_4:56519982-56520001 Msa0171780:intron 50.0%
! GGCTATTTCAGGTATTCCGC+AGG + chr1_4:56520798-56520817 None:intergenic 50.0%
! CTAGAGCCGACTCTTATGAC+AGG - chr1_4:56521098-56521117 Msa0171780:CDS 50.0%
! GGTTAGTTGTTGCGTGTCCA+TGG - chr1_4:56521119-56521138 Msa0171780:CDS 50.0%
TGGTGGGACTAAAGTTCCCA+TGG + chr1_4:56521377-56521396 None:intergenic 50.0%
ATAGCAGCGCTATAGCCTAG+CGG + chr1_4:56521793-56521812 None:intergenic 50.0%
CACTGTGTTGAGGTCTCCAT+TGG - chr1_4:56521826-56521845 Msa0171780:intron 50.0%
CAAGATGTCGCTGAGTTGCT+TGG - chr1_4:56521936-56521955 Msa0171780:intron 50.0%
TGTGGTGTGCGGTCTTTGTT+TGG + chr1_4:56522508-56522527 None:intergenic 50.0%
!! CTGTGTGAATGTTGGTGGTG+GGG - chr1_4:56522836-56522855 Msa0171780:intron 50.0%
!! TGTGTGAATGTTGGTGGTGG+GGG - chr1_4:56522837-56522856 Msa0171780:intron 50.0%
GACTAAGTAACCCTGTGGAC+TGG - chr1_4:56522975-56522994 Msa0171780:CDS 50.0%
TACAGAGACACCAGTCCACA+GGG + chr1_4:56522988-56523007 None:intergenic 50.0%
GTGTCTCTGTAGGCTGTTAG+TGG - chr1_4:56522997-56523016 Msa0171780:CDS 50.0%
! GCCCGAAGGTACAAAGAAAG+AGG + chr1_4:56523133-56523152 None:intergenic 50.0%
! TGTACCTTCGGGCATTGTGT+CGG - chr1_4:56523140-56523159 Msa0171780:intron 50.0%
GGGAATGCTTTGACACAAGC+CGG - chr1_4:56523569-56523588 Msa0171780:intron 50.0%
TCAAGATCATTGCCCGTGGA+GGG + chr1_4:56523673-56523692 None:intergenic 50.0%
ACCGGACATTAGTGAGCTCA+TGG - chr1_4:56523702-56523721 Msa0171780:intron 50.0%
AGTTCAGCCTCCTCTTGCAA+AGG + chr1_4:56523734-56523753 None:intergenic 50.0%
TTGCAAGAGGAGGCTGAACT+TGG - chr1_4:56523734-56523753 Msa0171780:intron 50.0%
! ACTGGGTCTAGTGGGCATAT+TGG + chr1_4:56524096-56524115 None:intergenic 50.0%
! GTTGAAGAAGGTGGCCTTAC+TGG - chr1_4:56524394-56524413 Msa0171780:intron 50.0%
CCATCAGCATCAGGATCTAG+AGG + chr1_4:56524457-56524476 None:intergenic 50.0%
CCTCTAGATCCTGATGCTGA+TGG - chr1_4:56524454-56524473 Msa0171780:intron 50.0%
GGTACACCTTCTTCTCCTCA+AGG + chr1_4:56524525-56524544 None:intergenic 50.0%
TCTTCTTCCTCTTCAACGGG+AGG + chr1_4:56524832-56524851 None:intergenic 50.0%
GATCTCACGCATAAAGCTGG+AGG - chr1_4:56524979-56524998 Msa0171780:intron 50.0%
TCACGCATAAAGCTGGAGGA+AGG - chr1_4:56524983-56525002 Msa0171780:intron 50.0%
TGAAGCAGATGAGGATGAGG+AGG - chr1_4:56525153-56525172 Msa0171780:intron 50.0%
TGAGGAGGAGGAAGTAGAAC+AGG - chr1_4:56525168-56525187 Msa0171780:intron 50.0%
! CACATGTTCTGGTTGGTTGG+GGG - chr1_4:56525401-56525420 Msa0171780:intron 50.0%
! ACATGTTCTGGTTGGTTGGG+GGG - chr1_4:56525402-56525421 Msa0171780:intron 50.0%
AGATGCTTGGGGATGGACAT+GGG - chr1_4:56525698-56525717 Msa0171780:intron 50.0%
CATTCCTGTGACCACCTATG+AGG + chr1_4:56525747-56525766 None:intergenic 50.0%
CTCATAGGTGGTCACAGGAA+TGG - chr1_4:56525745-56525764 Msa0171780:intron 50.0%
TTGGGAGGGACACCAACTAT+CGG - chr1_4:56526843-56526862 Msa0171780:intron 50.0%
ACGGCACAATCTCCGATAGT+TGG + chr1_4:56526858-56526877 None:intergenic 50.0%
TATAGCTGCGCGCAAGATCA+CGG + chr1_4:56526877-56526896 None:intergenic 50.0%
ACGGAGTGAGTCTCTAGACT+TGG + chr1_4:56527017-56527036 None:intergenic 50.0%
TTGCAGACCGCTTTATGACG+AGG - chr1_4:56527111-56527130 Msa0171780:intron 50.0%
CTCTCTCTGCCTTGATCTTG+GGG - chr1_4:56527138-56527157 Msa0171780:intron 50.0%
!! TGACTGACTGGGTTGGTTGT+TGG + chr1_4:56527585-56527604 None:intergenic 50.0%
! GTCCGGTTCGAGGAGTTAAG+CGG + chr1_4:56518669-56518688 None:intergenic 55.0%
CTTAACTCCTCGAACCGGAC+CGG - chr1_4:56518669-56518688 Msa0171780:three_prime_UTR 55.0%
GAAGATAGCGCTGCTCGAAC+CGG + chr1_4:56518691-56518710 None:intergenic 55.0%
AAGAGCTCATGAACCGGGCT+AGG - chr1_4:56518794-56518813 Msa0171780:three_prime_UTR 55.0%
TTGAGTCACGGTTCCTAGCC+CGG + chr1_4:56518810-56518829 None:intergenic 55.0%
GCTAGGAACCGTGACTCAAC+CGG - chr1_4:56518811-56518830 Msa0171780:exon 55.0%
! CTGGTTTGAGTCCTGGTCCT+AGG - chr1_4:56518866-56518885 Msa0171780:CDS 55.0%
CCATGAAACGACCTAGGACC+AGG + chr1_4:56518880-56518899 None:intergenic 55.0%
CCTGGTCCTAGGTCGTTTCA+TGG - chr1_4:56518877-56518896 Msa0171780:CDS 55.0%
TAATGGCGATGGACAAGCCG+CGG - chr1_4:56518921-56518940 Msa0171780:CDS 55.0%
TCGTACGAGATGGAAGCTGC+TGG - chr1_4:56520087-56520106 Msa0171780:intron 55.0%
GATGGAAGCTGCTGGACGAA+TGG - chr1_4:56520095-56520114 Msa0171780:intron 55.0%
!! GAGTGTGCTTGGTCTTGACC+TGG - chr1_4:56520717-56520736 Msa0171780:intron 55.0%
CGCTGAGTTGCTTGGCATGA+TGG - chr1_4:56521944-56521963 Msa0171780:intron 55.0%
TAGTGGCAGACTGTGGTGTG+CGG + chr1_4:56522519-56522538 None:intergenic 55.0%
!! TTGGTGGTGGGGGAGTGTTA+AGG - chr1_4:56522847-56522866 Msa0171780:intron 55.0%
CTACAGAGACACCAGTCCAC+AGG + chr1_4:56522989-56523008 None:intergenic 55.0%
!! CTGTGGACTGGTGTCTCTGT+AGG - chr1_4:56522987-56523006 Msa0171780:CDS 55.0%
! GTACCTTCGGGCATTGTGTC+GGG - chr1_4:56523141-56523160 Msa0171780:intron 55.0%
! TTGCCCGTGGAGGGATTTTC+TGG + chr1_4:56523664-56523683 None:intergenic 55.0%
CTCAAGATCATTGCCCGTGG+AGG + chr1_4:56523674-56523693 None:intergenic 55.0%
CTGCTCAAGATCATTGCCCG+TGG + chr1_4:56523677-56523696 None:intergenic 55.0%
! GTCTAGTGGGCATATTGGCC+TGG + chr1_4:56524091-56524110 None:intergenic 55.0%
! ATGCAGGCAAGTGCTACTGC+TGG - chr1_4:56524264-56524283 Msa0171780:intron 55.0%
! GCCTTACTGGAGAGCGCAAA+CGG - chr1_4:56524407-56524426 Msa0171780:intron 55.0%
ACCGTTTGCGCTCTCCAGTA+AGG + chr1_4:56524411-56524430 None:intergenic 55.0%
! TTACTGGAGAGCGCAAACGG+TGG - chr1_4:56524410-56524429 Msa0171780:intron 55.0%
! TACTGGAGAGCGCAAACGGT+GGG - chr1_4:56524411-56524430 Msa0171780:intron 55.0%
TCAACGGGAGGAACCCAAAG+CGG + chr1_4:56524820-56524839 None:intergenic 55.0%
TTGGGTTCCTCCCGTTGAAG+AGG - chr1_4:56524822-56524841 Msa0171780:intron 55.0%
GTTGCAGGTGGATGAAGAGC+TGG - chr1_4:56524949-56524968 Msa0171780:intron 55.0%
AGCAGATGAGGATGAGGAGG+AGG - chr1_4:56525156-56525175 Msa0171780:intron 55.0%
! CATGTTCTGGTTGGTTGGGG+GGG - chr1_4:56525403-56525422 Msa0171780:intron 55.0%
CCATCCCCAAGCATCTGCTA+AGG + chr1_4:56525694-56525713 None:intergenic 55.0%
CCTTAGCAGATGCTTGGGGA+TGG - chr1_4:56525691-56525710 Msa0171780:intron 55.0%
CAGATGCTTGGGGATGGACA+TGG - chr1_4:56525697-56525716 Msa0171780:intron 55.0%
ACCTCCTCATAGGTGGTCAC+AGG - chr1_4:56525740-56525759 Msa0171780:intron 55.0%
TCCTGTGACCACCTATGAGG+AGG + chr1_4:56525744-56525763 None:intergenic 55.0%
GCGGCCGTCATTGATCAAGA+AGG - chr1_4:56526518-56526537 Msa0171780:intron 55.0%
AGATGCAGCTGTTGCCGTTG+TGG - chr1_4:56527165-56527184 Msa0171780:intron 55.0%
TGTTGCCGTTGTGGCAGACT+TGG - chr1_4:56527174-56527193 Msa0171780:intron 55.0%
GGTCTCCAAGTCTGCCACAA+CGG + chr1_4:56527182-56527201 None:intergenic 55.0%
TGGCAGACTTGGAGACCACA+GGG - chr1_4:56527185-56527204 Msa0171780:CDS 55.0%
! AGGGTGCTAAGGGTGGTCTC+CGG - chr1_4:56519989-56520008 Msa0171780:intron 60.0%
!! GGTGGGGGAGTGTTAAGGTC+AGG - chr1_4:56522852-56522871 Msa0171780:intron 60.0%
GCAGGACACCACAAGGCTTC+TGG + chr1_4:56522898-56522917 None:intergenic 60.0%
CTTCCCGACACAATGCCCGA+AGG + chr1_4:56523147-56523166 None:intergenic 60.0%
! CTTCGGGCATTGTGTCGGGA+AGG - chr1_4:56523145-56523164 Msa0171780:intron 60.0%
AATCTCGTGGTCGGCCGCTT+TGG - chr1_4:56524803-56524822 Msa0171780:intron 60.0%
! ATCTCGTGGTCGGCCGCTTT+GGG - chr1_4:56524804-56524823 Msa0171780:intron 60.0%
GGTTGGGGGGGTTGACAATC+AGG - chr1_4:56525415-56525434 Msa0171780:intron 60.0%
GTGGCAGACTTGGAGACCAC+AGG - chr1_4:56527184-56527203 Msa0171780:intron 60.0%
TAGCGCTGCTCGAACCGGTC+CGG + chr1_4:56518686-56518705 None:intergenic 65.0%
GGGTGCTAAGGGTGGTCTCC+GGG - chr1_4:56519990-56520009 Msa0171780:intron 65.0%
AAACGGTGGGTGCCCCGAAG+TGG - chr1_4:56524424-56524443 Msa0171780:intron 65.0%
! GCTCGAACCGGTCCGGTTCG+AGG + chr1_4:56518679-56518698 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 56518470 56527657 56518470 ID=Msa0171780;Name=Msa0171780
chr1_4 mRNA 56518470 56527657 56518470 ID=Msa0171780-mRNA-1;Parent=Msa0171780;Name=Msa0171780-mRNA-1;_AED=0.04;_eAED=0.04;_QI=134|0.91|0.92|1|1|1|13|357|894
chr1_4 exon 56518470 56519010 56518470 ID=Msa0171780-mRNA-1:exon:17116;Parent=Msa0171780-mRNA-1
chr1_4 exon 56519160 56519293 56519160 ID=Msa0171780-mRNA-1:exon:17115;Parent=Msa0171780-mRNA-1
chr1_4 exon 56520327 56520530 56520327 ID=Msa0171780-mRNA-1:exon:17114;Parent=Msa0171780-mRNA-1
chr1_4 exon 56520761 56521171 56520761 ID=Msa0171780-mRNA-1:exon:17113;Parent=Msa0171780-mRNA-1
chr1_4 exon 56521254 56521737 56521254 ID=Msa0171780-mRNA-1:exon:17112;Parent=Msa0171780-mRNA-1
chr1_4 exon 56522347 56522515 56522347 ID=Msa0171780-mRNA-1:exon:17111;Parent=Msa0171780-mRNA-1
chr1_4 exon 56522961 56523118 56522961 ID=Msa0171780-mRNA-1:exon:17110;Parent=Msa0171780-mRNA-1
chr1_4 exon 56524118 56524195 56524118 ID=Msa0171780-mRNA-1:exon:17109;Parent=Msa0171780-mRNA-1
chr1_4 exon 56525008 56525080 56525008 ID=Msa0171780-mRNA-1:exon:17108;Parent=Msa0171780-mRNA-1
chr1_4 exon 56525276 56525336 56525276 ID=Msa0171780-mRNA-1:exon:17107;Parent=Msa0171780-mRNA-1
chr1_4 exon 56525972 56526189 56525972 ID=Msa0171780-mRNA-1:exon:17106;Parent=Msa0171780-mRNA-1
chr1_4 exon 56526299 56526470 56526299 ID=Msa0171780-mRNA-1:exon:17105;Parent=Msa0171780-mRNA-1
chr1_4 exon 56527185 56527657 56527185 ID=Msa0171780-mRNA-1:exon:17104;Parent=Msa0171780-mRNA-1
chr1_4 five_prime_UTR 56527524 56527657 56527524 ID=Msa0171780-mRNA-1:five_prime_utr;Parent=Msa0171780-mRNA-1
chr1_4 CDS 56527185 56527523 56527185 ID=Msa0171780-mRNA-1:cds;Parent=Msa0171780-mRNA-1
chr1_4 CDS 56526299 56526470 56526299 ID=Msa0171780-mRNA-1:cds;Parent=Msa0171780-mRNA-1
chr1_4 CDS 56525972 56526189 56525972 ID=Msa0171780-mRNA-1:cds;Parent=Msa0171780-mRNA-1
chr1_4 CDS 56525276 56525336 56525276 ID=Msa0171780-mRNA-1:cds;Parent=Msa0171780-mRNA-1
chr1_4 CDS 56525008 56525080 56525008 ID=Msa0171780-mRNA-1:cds;Parent=Msa0171780-mRNA-1
chr1_4 CDS 56524118 56524195 56524118 ID=Msa0171780-mRNA-1:cds;Parent=Msa0171780-mRNA-1
chr1_4 CDS 56522961 56523118 56522961 ID=Msa0171780-mRNA-1:cds;Parent=Msa0171780-mRNA-1
chr1_4 CDS 56522347 56522515 56522347 ID=Msa0171780-mRNA-1:cds;Parent=Msa0171780-mRNA-1
chr1_4 CDS 56521254 56521737 56521254 ID=Msa0171780-mRNA-1:cds;Parent=Msa0171780-mRNA-1
chr1_4 CDS 56520761 56521171 56520761 ID=Msa0171780-mRNA-1:cds;Parent=Msa0171780-mRNA-1
chr1_4 CDS 56520327 56520530 56520327 ID=Msa0171780-mRNA-1:cds;Parent=Msa0171780-mRNA-1
chr1_4 CDS 56519160 56519293 56519160 ID=Msa0171780-mRNA-1:cds;Parent=Msa0171780-mRNA-1
chr1_4 CDS 56518827 56519010 56518827 ID=Msa0171780-mRNA-1:cds;Parent=Msa0171780-mRNA-1
chr1_4 three_prime_UTR 56518470 56518826 56518470 ID=Msa0171780-mRNA-1:three_prime_utr;Parent=Msa0171780-mRNA-1
Gene Sequence

>Msa0171780

ATGCATTCATGTTACAGTTACAGTTACAGTTACGGCTCCACTTACATCCCCTTCAAATTAAACCGCTTAACTCCTCGAACCGGACCGGTTCGAGCAGCGCTATCTTCTCCAGAGAAGCGGACCAGAAAGAAGAAGCAAGTGAAAGATGATGACACTTTACTTGAGAACAGTCTCCGGTTCAGTTTTATGGAAGAGCTCATGAACCGGGCTAGGAACCGTGACTCAACCGGAGTTTCTCAAGTTATGTATGATATGATTGCTGCTGGTTTGAGTCCTGGTCCTAGGTCGTTTCATGGTTTGGTTGTTTCCTATGCTCTTAATGGCGATGGACAAGCCGCGATGGATTCGTTGAGGAGAGAGTTAGGTGCAGGGCTTCGACCGATTCATGAAACTTTTGTTGCATTGGTGAGATTGTTTGGGTCTAAAGGTCATTCAACTAAAGGTTTAGAGATACTTGGAGCTATGGAGAATCTAAATTATGATATTCGTCATGCTTGGATAATTCTTATTGAGGAACTTGTTCGGAACAAGCATTTGGAAGATGCTAATAAAGTGTTCTTGAAGGGTGCTAAGGGTGGTCTCCGGGCTACTGATGAAGTTTATGATCTCCTAATTGAGGAAGATTGCAAAGCTGGAGATCACTCTAATGCTTTGGAAATTTCGTACGAGATGGAAGCTGCTGGACGAATGGCAACAACATTCCATTTTAATTGCCTACTTTCTGTGCAGGCTACCTGCGGAATACCTGAAATAGCCTTTACAACATTTGAGAACATGGAATATGGAGAAGATTATATGAAGCCTGATACAGAAACATACAATTGGGTCATTCAAGCGTATACTAGAGCCGACTCTTATGACAGAGTTCAAGATGTCGCTGAGTTGCTTGGCATGATGGTTGAAGATCATAAGCGCGTACAGCCAAATGTTAAGACCCATGCGCTGTTAGTGGAGTGTTTTACCAAGTACTGTGTAGTACGAGAAGCTATCAGGCATTTCCGAGCACTTAAAAACTTTGAAGGGGGAACGAAAATTCTACATATGGATGGGAACCACGGAGATCCTCTTTCTTTGTACCTTCGGGCATTGTGTCGGGAAGGTAGGATTATTGACATGCTTGAAGCTTTAGAGGCTATGGCCAACGATAACCAGAAAATCCCTCCACGGGCAATGATCTTGAGCAGAAAATACCGGACATTAGTGAGCTCATGGATTGAACCTTTGCAAGAGGAGGCTGAACTTGGTTATGAGATTGATTATATTGCTAGATATGTTGAAGAAGGTGGCCTTACTGGAGAGCGCAAACGGTGGGTGCCCCGAAGTGGTAAAACACCTCTAGATCCTGATGCTGATGGATTTATATATTCAAACCCAATGGAGACTTCCTTCAAACAAAGATGCCTTGAGGAGAAGAAGGTGTACCATAAGAAGCTTCTGAAGAAGTTGCAGTATGAAGGAATTGTAGCTTTAGGGGATGGTGCATCTGAATCCGATTATGTTAGAGTGATTGAGTGGCTAAAGAAAATCATAAAGGGGCCTGAACAGAATGCATTAAAGCCTAAGGCGGCTAGTAAAATGCTTGTGAATGAATTGAAGGAAGAACTAGAAGCACAAGGTTTACCAATCGATGGAACCAGAAATGTTCTTTACCAGCGTGTTCAGAAAGCAAGAAGAATAAATCAATCTCGTGGTCGGCCGCTTTGGGTTCCTCCCGTTGAAGAGGAAGAAGAAGTGGTTGATTCTTTATCTGTTGTGGATGAAGAGCTGGATGCATTGATCTCACGCATAAAGCTGGAGGAAGGAAATACAGAGTATTGGAAACGTCGCTTCTTAGGAGAAGGCTTAAATGGTGATAATGGAAATGCAATGGATGAAGGTGAATCAGAGTCCCCTGATGTTCAAGATTATATTGATGTTGTAGGGGATGATGCAAAAGAGGCTGAAGATGATGAAGCAGATGAGGATGAGGAGGAGGAAGTAGAACAGGTAGAAGAGGAAGTAGCACCAGTAGAGAACCAAGATGTAGAGAGGATAAAGGAAAAGGAAGTTGAATCTAAAAAACCCCTTCAAATGATTGGAGTCCAGCTGTTGAAAGATTCTGACGAACCCTCTGCCACTTCTAAAAAGTCAAGAAGAAGAAGATCAAGACGGAATATGGTTGAGGATGATGCCGATGATGATTGGTTTCCTTTGGACATATTTGAGGCGTTTAAGGAAATGAGGAATCGAAGAGTGTTTGATGTATCAGACATGTATACCTTAGCAGATGCTTGGGGATGGACATGGGAGAGAGAACTGAAGAACAAACCTCCTCATAGGTGGTCACAGGAATGGGAAGTAGATTTGGCAATAAAAGTTATGCAGAAGGTCATACAATTGGGAGGGACACCAACTATCGGAGATTGTGCCGTGATCTTGCGCGCAGCTATAACAGCACCTCTACCTTCAGCTTTCTTGACAATTCTGCAGACAACTCATAGTCTTGGCTATAAGTTTGGGAGACCGCTTTATGACGAGGTCATCTCTCTCTGCCTTGATCTTGGGGAACTAGATGCAGCTGTTGCCGTTGTGGCAGACTTGGAGACCACAGGGATCTCAGTTTCAGATCAGACTTTGGACAGGGTGATTTCTGCTAAACAGGGGATTGACAATCCTTCAAATGATGGCATGGATGCTGGACTGTAA
Protein sequence

>Msa0171780

MHSCYSYSYSYGSTYIPFKLNRLTPRTGPVRAALSSPEKRTRKKKQVKDDDTLLENSLRFSFMEELMNRARNRDSTGVSQVMYDMIAAGLSPGPRSFHGLVVSYALNGDGQAAMDSLRRELGAGLRPIHETFVALVRLFGSKGHSTKGLEILGAMENLNYDIRHAWIILIEELVRNKHLEDANKVFLKGAKGGLRATDEVYDLLIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFTTFENMEYGEDYMKPDTETYNWVIQAYTRADSYDRVQDVAELLGMMVEDHKRVQPNVKTHALLVECFTKYCVVREAIRHFRALKNFEGGTKILHMDGNHGDPLSLYLRALCREGRIIDMLEALEAMANDNQKIPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYVEEGGLTGERKRWVPRSGKTPLDPDADGFIYSNPMETSFKQRCLEEKKVYHKKLLKKLQYEGIVALGDGASESDYVRVIEWLKKIIKGPEQNALKPKAASKMLVNELKEELEAQGLPIDGTRNVLYQRVQKARRINQSRGRPLWVPPVEEEEEVVDSLSVVDEELDALISRIKLEEGNTEYWKRRFLGEGLNGDNGNAMDEGESESPDVQDYIDVVGDDAKEAEDDEADEDEEEEVEQVEEEVAPVENQDVERIKEKEVESKKPLQMIGVQLLKDSDEPSATSKKSRRRRSRRNMVEDDADDDWFPLDIFEAFKEMRNRRVFDVSDMYTLADAWGWTWERELKNKPPHRWSQEWEVDLAIKVMQKVIQLGGTPTIGDCAVILRAAITAPLPSAFLTILQTTHSLGYKFGRPLYDEVISLCLDLGELDAAVAVVADLETTGISVSDQTLDRVISAKQGIDNPSNDGMDAGL*