Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513950 | XP_013460436.1 | 86.425 | 221 | 8 | 2 | 1 | 199 | 1 | 221 | 1.65e-133 | 383 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513950 | sp|Q9FJK3|AGL80_ARATH | 45.714 | 175 | 77 | 2 | 1 | 157 | 1 | 175 | 1.02e-43 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513950 | A0A072UXE2 | 86.425 | 221 | 8 | 2 | 1 | 199 | 1 | 221 | 7.87e-134 | 383 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0414400 | Msa0513950 | 0.845692 | 3.465905e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513950 | MtrunA17_Chr3g0107381 | 86.425 | 221 | 8 | 2 | 1 | 199 | 1 | 221 | 1.52e-137 | 383 |
| Msa0513950 | MtrunA17_Chr3g0110131 | 48.739 | 238 | 82 | 5 | 1 | 199 | 1 | 237 | 1.12e-64 | 199 |
| Msa0513950 | MtrunA17_Chr8g0351751 | 42.742 | 248 | 88 | 9 | 1 | 199 | 1 | 243 | 2.82e-47 | 155 |
| Msa0513950 | MtrunA17_Chr4g0014031 | 38.326 | 227 | 108 | 6 | 1 | 198 | 1 | 224 | 1.47e-41 | 140 |
| Msa0513950 | MtrunA17_Chr3g0107461 | 45.062 | 162 | 70 | 3 | 1 | 144 | 1 | 161 | 5.34e-41 | 136 |
| Msa0513950 | MtrunA17_Chr4g0014321 | 43.590 | 156 | 71 | 2 | 1 | 139 | 1 | 156 | 1.14e-39 | 135 |
| Msa0513950 | MtrunA17_Chr4g0014121 | 45.860 | 157 | 68 | 2 | 1 | 140 | 29 | 185 | 4.71e-39 | 132 |
| Msa0513950 | MtrunA17_Chr4g0014131 | 46.452 | 155 | 66 | 2 | 1 | 138 | 1 | 155 | 1.08e-38 | 132 |
| Msa0513950 | MtrunA17_Chr4g0013041 | 44.737 | 152 | 69 | 3 | 1 | 137 | 1 | 152 | 1.84e-38 | 131 |
| Msa0513950 | MtrunA17_Chr3g0107331 | 41.176 | 153 | 74 | 1 | 3 | 139 | 2 | 154 | 1.12e-37 | 128 |
| Msa0513950 | MtrunA17_Chr2g0296831 | 49.180 | 122 | 46 | 1 | 1 | 106 | 1 | 122 | 2.53e-35 | 120 |
| Msa0513950 | MtrunA17_Chr4g0031421 | 49.618 | 131 | 61 | 3 | 27 | 155 | 15 | 142 | 1.22e-34 | 119 |
| Msa0513950 | MtrunA17_Chr5g0432691 | 37.500 | 160 | 84 | 1 | 1 | 144 | 1 | 160 | 3.53e-34 | 119 |
| Msa0513950 | MtrunA17_Chr3g0105791 | 46.154 | 130 | 67 | 2 | 27 | 155 | 15 | 142 | 5.86e-32 | 112 |
| Msa0513950 | MtrunA17_Chr2g0283941 | 36.813 | 182 | 93 | 4 | 1 | 165 | 1 | 177 | 9.96e-32 | 115 |
| Msa0513950 | MtrunA17_Chr3g0107351 | 35.443 | 158 | 86 | 1 | 3 | 144 | 2 | 159 | 1.79e-30 | 109 |
| Msa0513950 | MtrunA17_Chr5g0420351 | 39.610 | 154 | 76 | 2 | 1 | 138 | 1 | 153 | 4.48e-30 | 108 |
| Msa0513950 | MtrunA17_Chr3g0107361 | 35.625 | 160 | 87 | 1 | 3 | 146 | 2 | 161 | 1.57e-29 | 107 |
| Msa0513950 | MtrunA17_Chr3g0107341 | 33.544 | 158 | 89 | 1 | 3 | 144 | 2 | 159 | 3.52e-28 | 103 |
| Msa0513950 | MtrunA17_Chr7g0218151 | 41.830 | 153 | 72 | 2 | 1 | 137 | 1 | 152 | 1.14e-27 | 102 |
| Msa0513950 | MtrunA17_Chr1g0193311 | 39.610 | 154 | 76 | 2 | 1 | 138 | 1 | 153 | 3.29e-26 | 98.6 |
| Msa0513950 | MtrunA17_Chr4g0012761 | 39.869 | 153 | 75 | 2 | 1 | 137 | 1 | 152 | 5.19e-26 | 98.2 |
| Msa0513950 | MtrunA17_Chr3g0106421 | 38.060 | 134 | 80 | 2 | 27 | 157 | 15 | 148 | 2.06e-25 | 98.2 |
| Msa0513950 | MtrunA17_Chr3g0106501 | 44.248 | 113 | 62 | 1 | 27 | 138 | 15 | 127 | 7.91e-25 | 95.1 |
| Msa0513950 | MtrunA17_Chr1g0188661 | 38.562 | 153 | 77 | 2 | 1 | 137 | 1 | 152 | 4.60e-24 | 93.2 |
| Msa0513950 | MtrunA17_Chr2g0296861 | 37.975 | 158 | 82 | 1 | 1 | 142 | 1 | 158 | 8.89e-24 | 92.4 |
| Msa0513950 | MtrunA17_Chr1g0197261 | 31.169 | 154 | 89 | 2 | 1 | 138 | 1 | 153 | 2.74e-22 | 88.6 |
| Msa0513950 | MtrunA17_Chr1g0188681 | 36.601 | 153 | 80 | 2 | 1 | 137 | 1 | 152 | 5.00e-22 | 87.8 |
| Msa0513950 | MtrunA17_Chr1g0188651 | 37.908 | 153 | 76 | 3 | 1 | 137 | 1 | 150 | 4.16e-21 | 85.5 |
| Msa0513950 | MtrunA17_Chr1g0197461 | 31.579 | 152 | 87 | 2 | 3 | 138 | 2 | 152 | 4.29e-20 | 82.8 |
| Msa0513950 | MtrunA17_Chr1g0197321 | 31.613 | 155 | 88 | 3 | 1 | 138 | 1 | 154 | 3.02e-19 | 80.5 |
| Msa0513950 | MtrunA17_Chr2g0296851 | 48.193 | 83 | 42 | 1 | 58 | 139 | 1 | 83 | 1.52e-15 | 69.3 |
| Msa0513950 | MtrunA17_Chr4g0008701 | 28.659 | 164 | 97 | 3 | 1 | 145 | 1 | 163 | 2.38e-13 | 67.8 |
| Msa0513950 | MtrunA17_Chr7g0267601 | 26.220 | 164 | 101 | 3 | 1 | 145 | 1 | 163 | 2.14e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513950 | AT5G48670.1 | 45.714 | 175 | 77 | 2 | 1 | 157 | 1 | 175 | 1.04e-44 | 151 |
| Msa0513950 | AT5G27810.1 | 58.750 | 80 | 33 | 0 | 26 | 105 | 14 | 93 | 8.72e-28 | 101 |
| Msa0513950 | AT3G05860.2 | 33.831 | 201 | 109 | 4 | 1 | 179 | 1 | 199 | 4.00e-27 | 102 |
| Msa0513950 | AT3G05860.1 | 34.555 | 191 | 101 | 4 | 1 | 169 | 1 | 189 | 3.11e-26 | 101 |
| Msa0513950 | AT5G26630.1 | 38.312 | 154 | 79 | 4 | 1 | 138 | 1 | 154 | 3.59e-26 | 100 |
| Msa0513950 | AT1G65300.1 | 34.868 | 152 | 83 | 1 | 3 | 138 | 2 | 153 | 1.29e-25 | 100 |
| Msa0513950 | AT3G05860.3 | 34.783 | 184 | 96 | 4 | 1 | 162 | 1 | 182 | 2.12e-25 | 99.4 |
| Msa0513950 | AT1G65330.1 | 34.211 | 152 | 84 | 1 | 3 | 138 | 2 | 153 | 2.10e-23 | 94.7 |
| Msa0513950 | AT5G26650.1 | 34.437 | 151 | 83 | 1 | 4 | 138 | 2 | 152 | 4.58e-23 | 95.1 |
| Msa0513950 | AT1G31640.1 | 34.667 | 150 | 81 | 2 | 3 | 136 | 2 | 150 | 9.06e-23 | 95.1 |
| Msa0513950 | AT1G31630.1 | 34.211 | 152 | 81 | 4 | 3 | 137 | 2 | 151 | 1.06e-22 | 93.6 |
| Msa0513950 | AT5G27960.1 | 32.450 | 151 | 86 | 1 | 4 | 138 | 2 | 152 | 1.22e-20 | 87.8 |
| Msa0513950 | AT2G28700.1 | 34.000 | 150 | 81 | 3 | 1 | 133 | 1 | 149 | 3.72e-20 | 86.7 |
| Msa0513950 | AT1G22590.2 | 30.435 | 161 | 87 | 3 | 1 | 142 | 1 | 155 | 1.67e-14 | 68.6 |
| Msa0513950 | AT2G40210.1 | 36.719 | 128 | 65 | 1 | 1 | 112 | 1 | 128 | 2.71e-12 | 65.1 |
| Msa0513950 | AT5G06500.1 | 24.571 | 175 | 112 | 3 | 1 | 159 | 1 | 171 | 1.53e-11 | 62.0 |
| Msa0513950 | AT5G26580.1 | 27.273 | 154 | 82 | 2 | 1 | 138 | 1 | 140 | 3.70e-11 | 61.6 |
Find 50 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTGTGCCACATGGTTTC+TGG | 0.169034 | 3_4:+64445256 | Msa0513950:CDS |
| TCCCCTCCTCTTTGTGTCAC+TGG | 0.360448 | 3_4:-64443902 | None:intergenic |
| CTCCAGTCACATTTCCAGCT+TGG | 0.368302 | 3_4:-64445128 | None:intergenic |
| AAATGTGACTGGAGGGGAGC+AGG | 0.397749 | 3_4:+64445137 | Msa0513950:CDS |
| AACAAAGGAATGACAACAAA+AGG | 0.420798 | 3_4:+64444944 | Msa0513950:CDS |
| GATGTGTTACCATTTGAAAA+TGG | 0.433134 | 3_4:+64445231 | Msa0513950:CDS |
| GGCCAATGCTGCCTTTGCAT+TGG | 0.439467 | 3_4:-64445180 | None:intergenic |
| ACGATCCTCAACCAGAGGTT+TGG | 0.446002 | 3_4:+64444788 | Msa0513950:CDS |
| AGAGGTTTGGCCTTCGCCAT+GGG | 0.456027 | 3_4:+64444801 | Msa0513950:CDS |
| TTCGCCATGGGGAGTGCAAA+AGG | 0.457021 | 3_4:+64444813 | Msa0513950:CDS |
| CACATCACCAATGTTGTTGT+TGG | 0.473556 | 3_4:-64445214 | None:intergenic |
| GACTGGAGGGGAGCAGGGAA+TGG | 0.473606 | 3_4:+64445143 | Msa0513950:CDS |
| GCTCTAGTTCGGGCAATCTC+CGG | 0.474104 | 3_4:-64444849 | None:intergenic |
| ATCCAATGCAAAGGCAGCAT+TGG | 0.475495 | 3_4:+64445178 | Msa0513950:CDS |
| CATGGCGAAGGCCAAACCTC+TGG | 0.486204 | 3_4:-64444799 | None:intergenic |
| CGATCAGTCTCAAGCTGAAG+AGG | 0.491578 | 3_4:+64445095 | Msa0513950:CDS |
| CAGAGGTTTGGCCTTCGCCA+TGG | 0.503800 | 3_4:+64444800 | Msa0513950:CDS |
| AATGTGACTGGAGGGGAGCA+GGG | 0.507720 | 3_4:+64445138 | Msa0513950:CDS |
| AAAAGGTGCTGTCAAGGTTC+CGG | 0.507965 | 3_4:+64444830 | Msa0513950:CDS |
| CTTTGTGTCACTGGTGATGT+AGG | 0.508282 | 3_4:-64443893 | None:intergenic |
| AAGAGAGTTTCTTGAAGCAA+AGG | 0.517056 | 3_4:+64444893 | Msa0513950:CDS |
| ATGTTTCAATGCCTTAATGC+TGG | 0.536723 | 3_4:+64444985 | Msa0513950:CDS |
| CGCTGCCATGACTAGGAAGA+AGG | 0.539960 | 3_4:+64443861 | None:intergenic |
| TTCTCAACGCTGCCATGACT+AGG | 0.541469 | 3_4:+64443854 | None:intergenic |
| GATTTCACCAACAACAACAT+TGG | 0.549412 | 3_4:+64445207 | Msa0513950:CDS |
| AACCAAGCTGGAAATGTGAC+TGG | 0.555977 | 3_4:+64445126 | Msa0513950:CDS |
| AGAACTTGAAACAGATCGAT+AGG | 0.558346 | 3_4:+64445067 | Msa0513950:CDS |
| GAGTGCAAAAGGTGCTGTCA+AGG | 0.560319 | 3_4:+64444824 | Msa0513950:CDS |
| GAGGTTGTTCAAAACCAAGC+TGG | 0.560495 | 3_4:+64445114 | Msa0513950:CDS |
| GCTCACCTTCTTCCTAGTCA+TGG | 0.576647 | 3_4:-64443866 | None:intergenic |
| CACCAGTGACACAAAGAGGA+GGG | 0.584600 | 3_4:+64443900 | Msa0513950:CDS |
| AAGCTGGAAATGTGACTGGA+GGG | 0.588063 | 3_4:+64445130 | Msa0513950:CDS |
| AAGAACAGCTAAAGAAACAA+AGG | 0.592614 | 3_4:+64444929 | Msa0513950:CDS |
| GAAGGCCAAACCTCTGGTTG+AGG | 0.594220 | 3_4:-64444793 | None:intergenic |
| GCAAAGGCAGCATTGGCCAA+TGG | 0.595451 | 3_4:+64445185 | Msa0513950:CDS |
| TTGTTGTTGGTGAAATCCAT+TGG | 0.595560 | 3_4:-64445201 | None:intergenic |
| AAGGAATGACAACAAAAGGA+AGG | 0.606288 | 3_4:+64444948 | Msa0513950:CDS |
| TGTCACTGGTGATGTAGGCA+AGG | 0.608234 | 3_4:-64443888 | None:intergenic |
| AGCTGGAAATGTGACTGGAG+GGG | 0.624312 | 3_4:+64445131 | Msa0513950:CDS |
| GAGGTTTGGCCTTCGCCATG+GGG | 0.626589 | 3_4:+64444802 | Msa0513950:CDS |
| ACCAGTGACACAAAGAGGAG+GGG | 0.628101 | 3_4:+64443901 | Msa0513950:CDS |
| ACATCACCAGTGACACAAAG+AGG | 0.631331 | 3_4:+64443896 | Msa0513950:CDS |
| CAAGCTGGAAATGTGACTGG+AGG | 0.651743 | 3_4:+64445129 | Msa0513950:CDS |
| ATGATCTCAATGATATCTCA+TGG | 0.651968 | 3_4:+64445034 | Msa0513950:CDS |
| ACATTGCTGATCCAATGCAA+AGG | 0.652826 | 3_4:+64445169 | Msa0513950:CDS |
| TGAGATCATCCATGCCAACA+TGG | 0.658598 | 3_4:-64445020 | None:intergenic |
| AATGGTAACATTGTGCCACA+TGG | 0.661986 | 3_4:+64445249 | Msa0513950:CDS |
| TCAAAACGATCCTCAACCAG+AGG | 0.673462 | 3_4:+64444783 | Msa0513950:CDS |
| TCACCAGTGACACAAAGAGG+AGG | 0.677630 | 3_4:+64443899 | Msa0513950:CDS |
| GATCAAGGCCAGAAACCATG+TGG | 0.733784 | 3_4:-64445264 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAATAAAATAAAAATT+GGG | - | chr3_4:64444361-64444380 | None:intergenic | 0.0% |
| !! | TATTTAAATAAAATAAAAAT+TGG | - | chr3_4:64444362-64444381 | None:intergenic | 0.0% |
| !! | ATTTAAATAAAATAAAAATT+GGG | - | chr3_4:64444361-64444380 | None:intergenic | 0.0% |
| !! | TATTTAAATAAAATAAAAAT+TGG | - | chr3_4:64444362-64444381 | None:intergenic | 0.0% |
| !!! | TAGTTTTTATCATTTTTCAA+TGG | - | chr3_4:64444066-64444085 | None:intergenic | 15.0% |
| !!! | TGAAATTATTTTTATCTCAT+TGG | + | chr3_4:64444429-64444448 | Msa0513950:intron | 15.0% |
| !!! | TAGTTTTTATCATTTTTCAA+TGG | - | chr3_4:64444066-64444085 | None:intergenic | 15.0% |
| !!! | TGAAATTATTTTTATCTCAT+TGG | + | chr3_4:64444429-64444448 | Msa0513950:intron | 15.0% |
| !! | ACATTCAAGAAAAGAAAAAA+TGG | + | chr3_4:64443925-64443944 | Msa0513950:CDS | 20.0% |
| !! | ACATTCAAGAAAAGAAAAAA+TGG | + | chr3_4:64443925-64443944 | Msa0513950:CDS | 20.0% |
| ! | AATGGTAATTACAACATGTA+TGG | - | chr3_4:64444048-64444067 | None:intergenic | 25.0% |
| ! | AGATCGATAAATTGAATCAA+TGG | + | chr3_4:64444141-64444160 | Msa0513950:intron | 25.0% |
| ! | GATCGATAAATTGAATCAAT+GGG | + | chr3_4:64444142-64444161 | Msa0513950:intron | 25.0% |
| ! | ATCGATAAATTGAATCAATG+GGG | + | chr3_4:64444143-64444162 | Msa0513950:intron | 25.0% |
| ! | TTAGTGGCAAACAAATTTAT+AGG | - | chr3_4:64444294-64444313 | None:intergenic | 25.0% |
| ! | AAATCTCTCACTTAATTTAG+TGG | - | chr3_4:64444310-64444329 | None:intergenic | 25.0% |
| !!! | AGAGATTTCATTTTGTTGTT+TGG | + | chr3_4:64444322-64444341 | Msa0513950:intron | 25.0% |
| !!! | TTTTTATCTCATTGGTGTTT+CGG | + | chr3_4:64444437-64444456 | Msa0513950:intron | 25.0% |
| ! | AATGATTGAAACAACAAAGT+AGG | - | chr3_4:64444565-64444584 | None:intergenic | 25.0% |
| !!! | CTTGTTGTATTTTTTATACC+AGG | + | chr3_4:64444594-64444613 | Msa0513950:intron | 25.0% |
| !! | ACAATGTTACCATTTTCAAA+TGG | - | chr3_4:64445243-64445262 | None:intergenic | 25.0% |
| ! | AATGGTAATTACAACATGTA+TGG | - | chr3_4:64444048-64444067 | None:intergenic | 25.0% |
| ! | AGATCGATAAATTGAATCAA+TGG | + | chr3_4:64444141-64444160 | Msa0513950:intron | 25.0% |
| ! | GATCGATAAATTGAATCAAT+GGG | + | chr3_4:64444142-64444161 | Msa0513950:intron | 25.0% |
| ! | ATCGATAAATTGAATCAATG+GGG | + | chr3_4:64444143-64444162 | Msa0513950:intron | 25.0% |
| ! | TTAGTGGCAAACAAATTTAT+AGG | - | chr3_4:64444294-64444313 | None:intergenic | 25.0% |
| ! | AAATCTCTCACTTAATTTAG+TGG | - | chr3_4:64444310-64444329 | None:intergenic | 25.0% |
| !!! | AGAGATTTCATTTTGTTGTT+TGG | + | chr3_4:64444322-64444341 | Msa0513950:intron | 25.0% |
| !!! | TTTTTATCTCATTGGTGTTT+CGG | + | chr3_4:64444437-64444456 | Msa0513950:intron | 25.0% |
| ! | AATGATTGAAACAACAAAGT+AGG | - | chr3_4:64444565-64444584 | None:intergenic | 25.0% |
| !!! | CTTGTTGTATTTTTTATACC+AGG | + | chr3_4:64444594-64444613 | Msa0513950:intron | 25.0% |
| !! | ACAATGTTACCATTTTCAAA+TGG | - | chr3_4:64445243-64445262 | None:intergenic | 25.0% |
| ATGCAAGATTGATATAGACA+TGG | - | chr3_4:64443983-64444002 | None:intergenic | 30.0% | |
| !!! | TTTCATTTTGTTGTTTGGCT+TGG | + | chr3_4:64444327-64444346 | Msa0513950:intron | 30.0% |
| ATTTAACATGTTTGTCCCTT+TGG | + | chr3_4:64444383-64444402 | Msa0513950:intron | 30.0% | |
| !! | TTTTATCTCATTGGTGTTTC+GGG | + | chr3_4:64444438-64444457 | Msa0513950:intron | 30.0% |
| !!! | TTTTTTGCTTTGCTCTAGTT+CGG | - | chr3_4:64444863-64444882 | None:intergenic | 30.0% |
| AAGAACAGCTAAAGAAACAA+AGG | + | chr3_4:64444929-64444948 | Msa0513950:CDS | 30.0% | |
| AACAAAGGAATGACAACAAA+AGG | + | chr3_4:64444944-64444963 | Msa0513950:CDS | 30.0% | |
| ATGATCTCAATGATATCTCA+TGG | + | chr3_4:64445034-64445053 | Msa0513950:CDS | 30.0% | |
| GATGTGTTACCATTTGAAAA+TGG | + | chr3_4:64445231-64445250 | Msa0513950:CDS | 30.0% | |
| ATGCAAGATTGATATAGACA+TGG | - | chr3_4:64443983-64444002 | None:intergenic | 30.0% | |
| !!! | TTTCATTTTGTTGTTTGGCT+TGG | + | chr3_4:64444327-64444346 | Msa0513950:intron | 30.0% |
| ATTTAACATGTTTGTCCCTT+TGG | + | chr3_4:64444383-64444402 | Msa0513950:intron | 30.0% | |
| !! | TTTTATCTCATTGGTGTTTC+GGG | + | chr3_4:64444438-64444457 | Msa0513950:intron | 30.0% |
| !!! | TTTTTTGCTTTGCTCTAGTT+CGG | - | chr3_4:64444863-64444882 | None:intergenic | 30.0% |
| AAGAACAGCTAAAGAAACAA+AGG | + | chr3_4:64444929-64444948 | Msa0513950:CDS | 30.0% | |
| AACAAAGGAATGACAACAAA+AGG | + | chr3_4:64444944-64444963 | Msa0513950:CDS | 30.0% | |
| ATGATCTCAATGATATCTCA+TGG | + | chr3_4:64445034-64445053 | Msa0513950:CDS | 30.0% | |
| GATGTGTTACCATTTGAAAA+TGG | + | chr3_4:64445231-64445250 | Msa0513950:CDS | 30.0% | |
| AAATTGAATCAATGGGGAGT+TGG | + | chr3_4:64444149-64444168 | Msa0513950:intron | 35.0% | |
| AATTGAATCAATGGGGAGTT+GGG | + | chr3_4:64444150-64444169 | Msa0513950:intron | 35.0% | |
| ACTTCAGTTTACGATGTTGT+GGG | - | chr3_4:64444197-64444216 | None:intergenic | 35.0% | |
| AACTTCAGTTTACGATGTTG+TGG | - | chr3_4:64444198-64444217 | None:intergenic | 35.0% | |
| TCAATCTTCTTGATCAAACC+TGG | - | chr3_4:64444615-64444634 | None:intergenic | 35.0% | |
| !! | TTTTTGCTTTGCTCTAGTTC+GGG | - | chr3_4:64444862-64444881 | None:intergenic | 35.0% |
| AAGAGAGTTTCTTGAAGCAA+AGG | + | chr3_4:64444893-64444912 | Msa0513950:CDS | 35.0% | |
| ! | TTAGCTGTTCTTGAGCTTTT+TGG | - | chr3_4:64444921-64444940 | None:intergenic | 35.0% |
| AAGGAATGACAACAAAAGGA+AGG | + | chr3_4:64444948-64444967 | Msa0513950:CDS | 35.0% | |
| ATGTTTCAATGCCTTAATGC+TGG | + | chr3_4:64444985-64445004 | Msa0513950:CDS | 35.0% | |
| CAAAAATCTGACCAGCATTA+AGG | - | chr3_4:64444999-64445018 | None:intergenic | 35.0% | |
| AGAACTTGAAACAGATCGAT+AGG | + | chr3_4:64445067-64445086 | Msa0513950:CDS | 35.0% | |
| ! | TTGTTGTTGGTGAAATCCAT+TGG | - | chr3_4:64445204-64445223 | None:intergenic | 35.0% |
| GATTTCACCAACAACAACAT+TGG | + | chr3_4:64445207-64445226 | Msa0513950:CDS | 35.0% | |
| AAATTGAATCAATGGGGAGT+TGG | + | chr3_4:64444149-64444168 | Msa0513950:intron | 35.0% | |
| AATTGAATCAATGGGGAGTT+GGG | + | chr3_4:64444150-64444169 | Msa0513950:intron | 35.0% | |
| ACTTCAGTTTACGATGTTGT+GGG | - | chr3_4:64444197-64444216 | None:intergenic | 35.0% | |
| AACTTCAGTTTACGATGTTG+TGG | - | chr3_4:64444198-64444217 | None:intergenic | 35.0% | |
| TCAATCTTCTTGATCAAACC+TGG | - | chr3_4:64444615-64444634 | None:intergenic | 35.0% | |
| !! | TTTTTGCTTTGCTCTAGTTC+GGG | - | chr3_4:64444862-64444881 | None:intergenic | 35.0% |
| AAGAGAGTTTCTTGAAGCAA+AGG | + | chr3_4:64444893-64444912 | Msa0513950:CDS | 35.0% | |
| ! | TTAGCTGTTCTTGAGCTTTT+TGG | - | chr3_4:64444921-64444940 | None:intergenic | 35.0% |
| AAGGAATGACAACAAAAGGA+AGG | + | chr3_4:64444948-64444967 | Msa0513950:CDS | 35.0% | |
| ATGTTTCAATGCCTTAATGC+TGG | + | chr3_4:64444985-64445004 | Msa0513950:CDS | 35.0% | |
| CAAAAATCTGACCAGCATTA+AGG | - | chr3_4:64444999-64445018 | None:intergenic | 35.0% | |
| AGAACTTGAAACAGATCGAT+AGG | + | chr3_4:64445067-64445086 | Msa0513950:CDS | 35.0% | |
| ! | TTGTTGTTGGTGAAATCCAT+TGG | - | chr3_4:64445204-64445223 | None:intergenic | 35.0% |
| GATTTCACCAACAACAACAT+TGG | + | chr3_4:64445207-64445226 | Msa0513950:CDS | 35.0% | |
| GTTCAAATCCCAGTTGTGAA+AGG | + | chr3_4:64444215-64444234 | Msa0513950:intron | 40.0% | |
| TATGAGCACCTTTCACAACT+GGG | - | chr3_4:64444226-64444245 | None:intergenic | 40.0% | |
| ATATGAGCACCTTTCACAAC+TGG | - | chr3_4:64444227-64444246 | None:intergenic | 40.0% | |
| ! | GGTCAGATTTTTGACCATGT+TGG | + | chr3_4:64445006-64445025 | Msa0513950:CDS | 40.0% |
| ! | GATTTTTGACCATGTTGGCA+TGG | + | chr3_4:64445011-64445030 | Msa0513950:CDS | 40.0% |
| ACATTGCTGATCCAATGCAA+AGG | + | chr3_4:64445169-64445188 | Msa0513950:CDS | 40.0% | |
| CACATCACCAATGTTGTTGT+TGG | - | chr3_4:64445217-64445236 | None:intergenic | 40.0% | |
| AATGGTAACATTGTGCCACA+TGG | + | chr3_4:64445249-64445268 | Msa0513950:CDS | 40.0% | |
| GTTCAAATCCCAGTTGTGAA+AGG | + | chr3_4:64444215-64444234 | Msa0513950:intron | 40.0% | |
| TATGAGCACCTTTCACAACT+GGG | - | chr3_4:64444226-64444245 | None:intergenic | 40.0% | |
| ATATGAGCACCTTTCACAAC+TGG | - | chr3_4:64444227-64444246 | None:intergenic | 40.0% | |
| ! | GGTCAGATTTTTGACCATGT+TGG | + | chr3_4:64445006-64445025 | Msa0513950:CDS | 40.0% |
| ! | GATTTTTGACCATGTTGGCA+TGG | + | chr3_4:64445011-64445030 | Msa0513950:CDS | 40.0% |
| ACATTGCTGATCCAATGCAA+AGG | + | chr3_4:64445169-64445188 | Msa0513950:CDS | 40.0% | |
| CACATCACCAATGTTGTTGT+TGG | - | chr3_4:64445217-64445236 | None:intergenic | 40.0% | |
| AATGGTAACATTGTGCCACA+TGG | + | chr3_4:64445249-64445268 | Msa0513950:CDS | 40.0% | |
| ! | CTTTGTGTCACTGGTGATGT+AGG | - | chr3_4:64443896-64443915 | None:intergenic | 45.0% |
| ACATCACCAGTGACACAAAG+AGG | + | chr3_4:64443896-64443915 | Msa0513950:CDS | 45.0% | |
| CACACAGACGCTATTCCAAA+GGG | - | chr3_4:64444401-64444420 | None:intergenic | 45.0% | |
| TCACACAGACGCTATTCCAA+AGG | - | chr3_4:64444402-64444421 | None:intergenic | 45.0% | |
| TCAAAACGATCCTCAACCAG+AGG | + | chr3_4:64444783-64444802 | Msa0513950:CDS | 45.0% | |
| !! | AAAAGGTGCTGTCAAGGTTC+CGG | + | chr3_4:64444830-64444849 | Msa0513950:CDS | 45.0% |
| TGAGATCATCCATGCCAACA+TGG | - | chr3_4:64445023-64445042 | None:intergenic | 45.0% | |
| GAGGTTGTTCAAAACCAAGC+TGG | + | chr3_4:64445114-64445133 | Msa0513950:CDS | 45.0% | |
| AACCAAGCTGGAAATGTGAC+TGG | + | chr3_4:64445126-64445145 | Msa0513950:CDS | 45.0% | |
| AAGCTGGAAATGTGACTGGA+GGG | + | chr3_4:64445130-64445149 | Msa0513950:CDS | 45.0% | |
| ATCCAATGCAAAGGCAGCAT+TGG | + | chr3_4:64445178-64445197 | Msa0513950:CDS | 45.0% | |
| ACATTGTGCCACATGGTTTC+TGG | + | chr3_4:64445256-64445275 | Msa0513950:CDS | 45.0% | |
| ! | CTTTGTGTCACTGGTGATGT+AGG | - | chr3_4:64443896-64443915 | None:intergenic | 45.0% |
| ACATCACCAGTGACACAAAG+AGG | + | chr3_4:64443896-64443915 | Msa0513950:CDS | 45.0% | |
| CACACAGACGCTATTCCAAA+GGG | - | chr3_4:64444401-64444420 | None:intergenic | 45.0% | |
| TCACACAGACGCTATTCCAA+AGG | - | chr3_4:64444402-64444421 | None:intergenic | 45.0% | |
| TCAAAACGATCCTCAACCAG+AGG | + | chr3_4:64444783-64444802 | Msa0513950:CDS | 45.0% | |
| !! | AAAAGGTGCTGTCAAGGTTC+CGG | + | chr3_4:64444830-64444849 | Msa0513950:CDS | 45.0% |
| TGAGATCATCCATGCCAACA+TGG | - | chr3_4:64445023-64445042 | None:intergenic | 45.0% | |
| GAGGTTGTTCAAAACCAAGC+TGG | + | chr3_4:64445114-64445133 | Msa0513950:CDS | 45.0% | |
| AACCAAGCTGGAAATGTGAC+TGG | + | chr3_4:64445126-64445145 | Msa0513950:CDS | 45.0% | |
| AAGCTGGAAATGTGACTGGA+GGG | + | chr3_4:64445130-64445149 | Msa0513950:CDS | 45.0% | |
| ATCCAATGCAAAGGCAGCAT+TGG | + | chr3_4:64445178-64445197 | Msa0513950:CDS | 45.0% | |
| ACATTGTGCCACATGGTTTC+TGG | + | chr3_4:64445256-64445275 | Msa0513950:CDS | 45.0% | |
| !! | TTTAAATAAAATAAAAATTG+GGG | - | chr3_4:64444360-64444379 | None:intergenic | 5.0% |
| !! | TTTAAATAAAATAAAAATTG+GGG | - | chr3_4:64444360-64444379 | None:intergenic | 5.0% |
| ! | TGTCACTGGTGATGTAGGCA+AGG | - | chr3_4:64443891-64443910 | None:intergenic | 50.0% |
| TCACCAGTGACACAAAGAGG+AGG | + | chr3_4:64443899-64443918 | Msa0513950:CDS | 50.0% | |
| CACCAGTGACACAAAGAGGA+GGG | + | chr3_4:64443900-64443919 | Msa0513950:CDS | 50.0% | |
| ACCAGTGACACAAAGAGGAG+GGG | + | chr3_4:64443901-64443920 | Msa0513950:CDS | 50.0% | |
| GGGAGTTGGGTCTAGCAAAA+TGG | + | chr3_4:64444163-64444182 | Msa0513950:intron | 50.0% | |
| ACGATCCTCAACCAGAGGTT+TGG | + | chr3_4:64444788-64444807 | Msa0513950:CDS | 50.0% | |
| !! | GAGTGCAAAAGGTGCTGTCA+AGG | + | chr3_4:64444824-64444843 | Msa0513950:CDS | 50.0% |
| CGATCAGTCTCAAGCTGAAG+AGG | + | chr3_4:64445095-64445114 | Msa0513950:CDS | 50.0% | |
| CTCCAGTCACATTTCCAGCT+TGG | - | chr3_4:64445131-64445150 | None:intergenic | 50.0% | |
| CAAGCTGGAAATGTGACTGG+AGG | + | chr3_4:64445129-64445148 | Msa0513950:CDS | 50.0% | |
| AGCTGGAAATGTGACTGGAG+GGG | + | chr3_4:64445131-64445150 | Msa0513950:CDS | 50.0% | |
| ! | TGTCACTGGTGATGTAGGCA+AGG | - | chr3_4:64443891-64443910 | None:intergenic | 50.0% |
| TCACCAGTGACACAAAGAGG+AGG | + | chr3_4:64443899-64443918 | Msa0513950:CDS | 50.0% | |
| CACCAGTGACACAAAGAGGA+GGG | + | chr3_4:64443900-64443919 | Msa0513950:CDS | 50.0% | |
| ACCAGTGACACAAAGAGGAG+GGG | + | chr3_4:64443901-64443920 | Msa0513950:CDS | 50.0% | |
| GGGAGTTGGGTCTAGCAAAA+TGG | + | chr3_4:64444163-64444182 | Msa0513950:intron | 50.0% | |
| ACGATCCTCAACCAGAGGTT+TGG | + | chr3_4:64444788-64444807 | Msa0513950:CDS | 50.0% | |
| !! | GAGTGCAAAAGGTGCTGTCA+AGG | + | chr3_4:64444824-64444843 | Msa0513950:CDS | 50.0% |
| CGATCAGTCTCAAGCTGAAG+AGG | + | chr3_4:64445095-64445114 | Msa0513950:CDS | 50.0% | |
| CTCCAGTCACATTTCCAGCT+TGG | - | chr3_4:64445131-64445150 | None:intergenic | 50.0% | |
| CAAGCTGGAAATGTGACTGG+AGG | + | chr3_4:64445129-64445148 | Msa0513950:CDS | 50.0% | |
| AGCTGGAAATGTGACTGGAG+GGG | + | chr3_4:64445131-64445150 | Msa0513950:CDS | 50.0% | |
| TCCCCTCCTCTTTGTGTCAC+TGG | - | chr3_4:64443905-64443924 | None:intergenic | 55.0% | |
| GAAGGCCAAACCTCTGGTTG+AGG | - | chr3_4:64444796-64444815 | None:intergenic | 55.0% | |
| ! | AGAGGTTTGGCCTTCGCCAT+GGG | + | chr3_4:64444801-64444820 | Msa0513950:CDS | 55.0% |
| ! | TTTTGCACTCCCCATGGCGA+AGG | - | chr3_4:64444814-64444833 | None:intergenic | 55.0% |
| ! | TTCGCCATGGGGAGTGCAAA+AGG | + | chr3_4:64444813-64444832 | Msa0513950:CDS | 55.0% |
| ! | AGCACCTTTTGCACTCCCCA+TGG | - | chr3_4:64444820-64444839 | None:intergenic | 55.0% |
| ! | GCTCTAGTTCGGGCAATCTC+CGG | - | chr3_4:64444852-64444871 | None:intergenic | 55.0% |
| AAATGTGACTGGAGGGGAGC+AGG | + | chr3_4:64445137-64445156 | Msa0513950:CDS | 55.0% | |
| AATGTGACTGGAGGGGAGCA+GGG | + | chr3_4:64445138-64445157 | Msa0513950:CDS | 55.0% | |
| GGCCAATGCTGCCTTTGCAT+TGG | - | chr3_4:64445183-64445202 | None:intergenic | 55.0% | |
| !! | GCAAAGGCAGCATTGGCCAA+TGG | + | chr3_4:64445185-64445204 | Msa0513950:CDS | 55.0% |
| TCCCCTCCTCTTTGTGTCAC+TGG | - | chr3_4:64443905-64443924 | None:intergenic | 55.0% | |
| GAAGGCCAAACCTCTGGTTG+AGG | - | chr3_4:64444796-64444815 | None:intergenic | 55.0% | |
| ! | AGAGGTTTGGCCTTCGCCAT+GGG | + | chr3_4:64444801-64444820 | Msa0513950:CDS | 55.0% |
| ! | TTTTGCACTCCCCATGGCGA+AGG | - | chr3_4:64444814-64444833 | None:intergenic | 55.0% |
| ! | TTCGCCATGGGGAGTGCAAA+AGG | + | chr3_4:64444813-64444832 | Msa0513950:CDS | 55.0% |
| ! | AGCACCTTTTGCACTCCCCA+TGG | - | chr3_4:64444820-64444839 | None:intergenic | 55.0% |
| ! | GCTCTAGTTCGGGCAATCTC+CGG | - | chr3_4:64444852-64444871 | None:intergenic | 55.0% |
| AAATGTGACTGGAGGGGAGC+AGG | + | chr3_4:64445137-64445156 | Msa0513950:CDS | 55.0% | |
| AATGTGACTGGAGGGGAGCA+GGG | + | chr3_4:64445138-64445157 | Msa0513950:CDS | 55.0% | |
| GGCCAATGCTGCCTTTGCAT+TGG | - | chr3_4:64445183-64445202 | None:intergenic | 55.0% | |
| !! | GCAAAGGCAGCATTGGCCAA+TGG | + | chr3_4:64445185-64445204 | Msa0513950:CDS | 55.0% |
| CATGGCGAAGGCCAAACCTC+TGG | - | chr3_4:64444802-64444821 | None:intergenic | 60.0% | |
| ! | CAGAGGTTTGGCCTTCGCCA+TGG | + | chr3_4:64444800-64444819 | Msa0513950:CDS | 60.0% |
| ! | GAGGTTTGGCCTTCGCCATG+GGG | + | chr3_4:64444802-64444821 | Msa0513950:CDS | 60.0% |
| CATGGCGAAGGCCAAACCTC+TGG | - | chr3_4:64444802-64444821 | None:intergenic | 60.0% | |
| ! | CAGAGGTTTGGCCTTCGCCA+TGG | + | chr3_4:64444800-64444819 | Msa0513950:CDS | 60.0% |
| ! | GAGGTTTGGCCTTCGCCATG+GGG | + | chr3_4:64444802-64444821 | Msa0513950:CDS | 60.0% |
| GACTGGAGGGGAGCAGGGAA+TGG | + | chr3_4:64445143-64445162 | Msa0513950:CDS | 65.0% | |
| GACTGGAGGGGAGCAGGGAA+TGG | + | chr3_4:64445143-64445162 | Msa0513950:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 64443868 | 64445284 | 64443868 | ID=Msa0513950;Name=Msa0513950 |
| chr3_4 | mRNA | 64443868 | 64445284 | 64443868 | ID=Msa0513950-mRNA-1;Parent=Msa0513950;Name=Msa0513950-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|199 |
| chr3_4 | exon | 64443868 | 64443946 | 64443868 | ID=Msa0513950-mRNA-1:exon:16213;Parent=Msa0513950-mRNA-1 |
| chr3_4 | exon | 64444764 | 64445284 | 64444764 | ID=Msa0513950-mRNA-1:exon:16214;Parent=Msa0513950-mRNA-1 |
| chr3_4 | CDS | 64443868 | 64443946 | 64443868 | ID=Msa0513950-mRNA-1:cds;Parent=Msa0513950-mRNA-1 |
| chr3_4 | CDS | 64444764 | 64445284 | 64444764 | ID=Msa0513950-mRNA-1:cds;Parent=Msa0513950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
