Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514950 | XP_003601932.2 | 89.434 | 265 | 27 | 1 | 1 | 265 | 1 | 264 | 5.33e-149 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514950 | G7J3P8 | 89.434 | 265 | 27 | 1 | 1 | 265 | 1 | 264 | 2.54e-149 | 427 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0514950 | Msa1380030 | 0.887887 | 9.609686e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514950 | MtrunA17_Chr3g0123831 | 89.434 | 265 | 27 | 1 | 1 | 265 | 1 | 264 | 4.90e-153 | 427 |
| Msa0514950 | MtrunA17_Chr8g0381861 | 44.912 | 285 | 112 | 11 | 20 | 278 | 25 | 290 | 2.65e-45 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514950 | AT5G65250.1 | 50.000 | 198 | 91 | 3 | 59 | 253 | 79 | 271 | 5.93e-47 | 159 |
Find 97 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCGAGGCATGCTGAGAAAT+TGG | 0.207238 | 3_4:+65929859 | Msa0514950:CDS |
| GGTAGAGAGGATTGAAAGTT+TGG | 0.218905 | 3_4:+65929796 | Msa0514950:CDS |
| AGACCGCCCAATCTGAAGTT+TGG | 0.306522 | 3_4:+65931983 | Msa0514950:exon |
| AGCAATGCAATCTGAAATAT+TGG | 0.309578 | 3_4:+65931483 | Msa0514950:CDS |
| TTTGAAGGATCGCATCATTC+AGG | 0.323905 | 3_4:+65929910 | Msa0514950:CDS |
| CGCGATTGTATCGATAGTTT+TGG | 0.332751 | 3_4:+65929613 | Msa0514950:CDS |
| TTGTGGTAGTTGAGTATTAT+TGG | 0.333371 | 3_4:-65929263 | None:intergenic |
| GGAGCCATGTGAGAGTTATC+AGG | 0.333603 | 3_4:+65929831 | Msa0514950:CDS |
| GCTCTCCACGACTTTGGAAT+TGG | 0.336434 | 3_4:-65931908 | None:intergenic |
| AGGAGTTGAGGTTCGGAGTT+TGG | 0.346257 | 3_4:-65929430 | None:intergenic |
| TCGAGGCATGCTGAGAAATT+GGG | 0.352597 | 3_4:+65929860 | Msa0514950:CDS |
| CATATTACCTTCGGATTCAA+TGG | 0.368098 | 3_4:-65929513 | None:intergenic |
| TTGAGGTTCGGAGTTTGGTT+TGG | 0.376745 | 3_4:-65929425 | None:intergenic |
| GTAGACAGGAAGAAAGAATA+TGG | 0.394176 | 3_4:-65932057 | None:intergenic |
| CGGGAAATGGATCGAAGAAT+TGG | 0.397036 | 3_4:+65929636 | Msa0514950:CDS |
| TGGTAATCGCTACGCTTTGA+AGG | 0.398242 | 3_4:+65929895 | Msa0514950:CDS |
| AATTTCTAAGTGGCAAATCT+TGG | 0.406249 | 3_4:+65932032 | Msa0514950:three_prime_UTR |
| TATCTTGCTCTCCACGACTT+TGG | 0.415944 | 3_4:-65931914 | None:intergenic |
| GACCGCCCAATCTGAAGTTT+GGG | 0.417089 | 3_4:+65931984 | Msa0514950:exon |
| ATTCTCTCGCTTGGGAAGTC+TGG | 0.421182 | 3_4:+65931870 | Msa0514950:CDS |
| TTCGGAGTTTGGTTTGGAGT+TGG | 0.422822 | 3_4:-65929419 | None:intergenic |
| ATAGTGTTTGCTGTGGATAT+AGG | 0.422925 | 3_4:+65932123 | Msa0514950:three_prime_UTR |
| AGAAAGAATGTGGGAGGAGG+CGG | 0.429987 | 3_4:-65929364 | None:intergenic |
| ATTACTAGTAACAATTGGTT+AGG | 0.434786 | 3_4:+65932155 | Msa0514950:three_prime_UTR |
| GAGAAATTACTAGTAACAAT+TGG | 0.437810 | 3_4:+65932150 | Msa0514950:three_prime_UTR |
| CTCAACCCAAACTTCAGATT+GGG | 0.439223 | 3_4:-65931989 | None:intergenic |
| TTGATCTGATTCTCTCGCTT+GGG | 0.444939 | 3_4:+65931862 | Msa0514950:CDS |
| TATTGGTGGCTTTAGATAGC+TGG | 0.444979 | 3_4:-65929246 | None:intergenic |
| ACTCAACCCAAACTTCAGAT+TGG | 0.446259 | 3_4:-65931990 | None:intergenic |
| CTTGATCTGATTCTCTCGCT+TGG | 0.446445 | 3_4:+65931861 | Msa0514950:CDS |
| ACGTTTCTGCATATTACCTT+CGG | 0.457187 | 3_4:-65929522 | None:intergenic |
| GTTTGCTGTGGATATAGGTT+AGG | 0.459806 | 3_4:+65932128 | Msa0514950:three_prime_UTR |
| TGCTAGAGCTCTTGTAGCCT+CGG | 0.462063 | 3_4:-65931464 | None:intergenic |
| ATGCTGAGAAATTGGGGAAA+AGG | 0.467269 | 3_4:+65929867 | Msa0514950:CDS |
| TCAATGGCTTTGAGAAGAAA+CGG | 0.473350 | 3_4:-65929497 | None:intergenic |
| TGACTCTCTTCTTTCGGCGA+TGG | 0.480004 | 3_4:+65929568 | Msa0514950:CDS |
| TTGTGGTTGGTGCGTGGATA+CGG | 0.480500 | 3_4:+65929726 | Msa0514950:CDS |
| AGAAAATATGAAAGGTGGAT+TGG | 0.482567 | 3_4:+65929775 | Msa0514950:CDS |
| TTGGTTAGGACAGTATCAAT+TGG | 0.491328 | 3_4:+65932169 | Msa0514950:three_prime_UTR |
| TTGGTTTGGAGTTGGAAAGA+AGG | 0.491483 | 3_4:-65929411 | None:intergenic |
| ACTCCGAACCTCAACTCCTT+CGG | 0.493147 | 3_4:+65929434 | Msa0514950:CDS |
| CAATGGCTTTGAGAAGAAAC+GGG | 0.493308 | 3_4:-65929496 | None:intergenic |
| TGAAAGGTGGATTGGTAGAG+AGG | 0.494701 | 3_4:+65929783 | Msa0514950:CDS |
| TGAAGTTTGGGTTGAGTCAA+GGG | 0.499009 | 3_4:+65931996 | Msa0514950:exon |
| AAAGTTTGGAGAAAGAATTG+AGG | 0.499148 | 3_4:+65929810 | Msa0514950:CDS |
| GGCGGGAGCAGTGGTGGTGA+AGG | 0.501438 | 3_4:-65929387 | None:intergenic |
| CTGAAGTTTGGGTTGAGTCA+AGG | 0.508971 | 3_4:+65931995 | Msa0514950:exon |
| ATCAACAATTCAATGTAGAC+AGG | 0.509567 | 3_4:-65932071 | None:intergenic |
| GGAGTTGGAAAGAAGGTGGC+GGG | 0.524988 | 3_4:-65929404 | None:intergenic |
| CGTGGATACGGACGCGGCAA+TGG | 0.527112 | 3_4:+65929738 | Msa0514950:CDS |
| AGGAGAAAGAATGTGGGAGG+AGG | 0.529831 | 3_4:-65929367 | None:intergenic |
| AAAGAAGGTGGCGGGAGCAG+TGG | 0.534925 | 3_4:-65929396 | None:intergenic |
| AGTAGAGAAAATATGAAAGG+TGG | 0.546819 | 3_4:+65929770 | Msa0514950:CDS |
| AGTCCGAAGGAGTTGAGGTT+CGG | 0.548437 | 3_4:-65929437 | None:intergenic |
| GCAATCTGAAATATTGGAGA+AGG | 0.554196 | 3_4:+65931489 | Msa0514950:CDS |
| GTTTGGAGTTGGAAAGAAGG+TGG | 0.554584 | 3_4:-65929408 | None:intergenic |
| GTGGATATTTCGTGTTGTGA+AGG | 0.555229 | 3_4:-65929474 | None:intergenic |
| GTGGTGAGTGGTGTTGTGGT+TGG | 0.555790 | 3_4:+65929713 | Msa0514950:CDS |
| GAAGGTGGCGGGAGCAGTGG+TGG | 0.556157 | 3_4:-65929393 | None:intergenic |
| TGGAGTTGGAAAGAAGGTGG+CGG | 0.558091 | 3_4:-65929405 | None:intergenic |
| TGGTAGTTGAGTATTATTGG+TGG | 0.559719 | 3_4:-65929260 | None:intergenic |
| ATAAGTAGAGAAAATATGAA+AGG | 0.568186 | 3_4:+65929767 | Msa0514950:CDS |
| CGAGGCATGCTGAGAAATTG+GGG | 0.575139 | 3_4:+65929861 | Msa0514950:CDS |
| GAGCCATGTGAGAGTTATCA+GGG | 0.576135 | 3_4:+65929832 | Msa0514950:CDS |
| ACCACAACACCACTCACCAC+CGG | 0.581979 | 3_4:-65929710 | None:intergenic |
| CTCAAAGCCATTGAATCCGA+AGG | 0.582277 | 3_4:+65929506 | Msa0514950:CDS |
| TTGGTGCGTGGATACGGACG+CGG | 0.584140 | 3_4:+65929732 | Msa0514950:CDS |
| GTGGTGAAGGAGAAAGAATG+TGG | 0.585252 | 3_4:-65929374 | None:intergenic |
| TAACAGAATTAGTGTTGTGT+GGG | 0.586185 | 3_4:+65929676 | Msa0514950:CDS |
| TTGGGAAGTCTGGTAAGCTG+TGG | 0.588362 | 3_4:+65931880 | Msa0514950:CDS |
| ACCGGTGGTGAGTGGTGTTG+TGG | 0.590614 | 3_4:+65929709 | Msa0514950:CDS |
| TAGATAGCTGGAAGAAGCAA+TGG | 0.592866 | 3_4:-65929234 | None:intergenic |
| GGATACGGACGCGGCAATGG+AGG | 0.597439 | 3_4:+65929741 | Msa0514950:CDS |
| TGGGAAGTCTGGTAAGCTGT+GGG | 0.598835 | 3_4:+65931881 | Msa0514950:CDS |
| TGAAGGAGAAAGAATGTGGG+AGG | 0.602785 | 3_4:-65929370 | None:intergenic |
| AAATTGGGGAAAAGGTTTCG+TGG | 0.603100 | 3_4:+65929875 | Msa0514950:CDS |
| GAAAACCAATTCCAAAGTCG+TGG | 0.604937 | 3_4:+65931903 | Msa0514950:CDS |
| GGTGAAGTCCGAAGGAGTTG+AGG | 0.605524 | 3_4:-65929442 | None:intergenic |
| AGAGTTCATAGTGTTTGCTG+TGG | 0.606392 | 3_4:+65932116 | Msa0514950:three_prime_UTR |
| TCTGAAGCGGTGAAGTCCGA+AGG | 0.609749 | 3_4:-65929450 | None:intergenic |
| GTGGTGTTGTGGTTGGTGCG+TGG | 0.613662 | 3_4:+65929720 | Msa0514950:CDS |
| TGAGGATGAAGTAAAGCATG+TGG | 0.622448 | 3_4:+65931959 | Msa0514950:CDS |
| TGGTGAAGGAGAAAGAATGT+GGG | 0.625948 | 3_4:-65929373 | None:intergenic |
| AAATTCATGAAATTTCTAAG+TGG | 0.628182 | 3_4:+65932022 | Msa0514950:three_prime_UTR |
| AATTGGTTGTTGAATGTGAG+TGG | 0.628760 | 3_4:+65929653 | Msa0514950:CDS |
| AACCCAAACTTCAGATTGGG+CGG | 0.630047 | 3_4:-65931986 | None:intergenic |
| ATGCAGAAACGTGTCTTCAG+CGG | 0.637945 | 3_4:+65929533 | Msa0514950:CDS |
| AGAGTTTGTGATGATTTGAG+TGG | 0.643998 | 3_4:-65929303 | None:intergenic |
| GTAACAGAATTAGTGTTGTG+TGG | 0.649707 | 3_4:+65929675 | Msa0514950:CDS |
| AAACCCTGATAACTCTCACA+TGG | 0.675026 | 3_4:-65929835 | None:intergenic |
| TGGCTTTGAGAAGAAACGGG+TGG | 0.686024 | 3_4:-65929493 | None:intergenic |
| GTGTTGTGAAGGATCTGAAG+CGG | 0.694023 | 3_4:-65929463 | None:intergenic |
| AGTTTGGGTTGAGTCAAGGG+AGG | 0.698504 | 3_4:+65931999 | Msa0514950:three_prime_UTR |
| CAAAACTATCGATACAATCG+CGG | 0.700679 | 3_4:-65929612 | None:intergenic |
| AAAGTGAGAGTGTAGCATTG+TGG | 0.711944 | 3_4:-65929280 | None:intergenic |
| AACAGAATTAGTGTTGTGTG+GGG | 0.734211 | 3_4:+65929677 | Msa0514950:CDS |
| TCAAGCACAGAAGAACTCCG+AGG | 0.768660 | 3_4:+65931447 | Msa0514950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATAGATATTAAAATAAA+GGG | + | chr3_4:65930126-65930145 | Msa0514950:intron | 10.0% |
| !!! | CAAAGTATTAAATATATTTT+AGG | - | chr3_4:65930318-65930337 | None:intergenic | 10.0% |
| !! | CTAAAATATATTTAATACTT+TGG | + | chr3_4:65930316-65930335 | Msa0514950:intron | 10.0% |
| !!! | ATTTTATGAAACTTAAAATT+TGG | + | chr3_4:65930350-65930369 | Msa0514950:intron | 10.0% |
| !! | TTCTTAATTAATTTATTGAA+GGG | - | chr3_4:65930711-65930730 | None:intergenic | 10.0% |
| !! | TTTCTTAATTAATTTATTGA+AGG | - | chr3_4:65930712-65930731 | None:intergenic | 10.0% |
| !!! | CCTTTATTTTAATATCTATA+TGG | - | chr3_4:65930128-65930147 | None:intergenic | 15.0% |
| !! | CCATATAGATATTAAAATAA+AGG | + | chr3_4:65930125-65930144 | Msa0514950:intron | 15.0% |
| !!! | AACAAAGATAGTTTAAAATT+CGG | + | chr3_4:65930798-65930817 | Msa0514950:intron | 15.0% |
| !! | TAAAAAACAAAGAAACATTA+TGG | - | chr3_4:65930872-65930891 | None:intergenic | 15.0% |
| !!! | TTTAAGTTTCTTAATCATTT+AGG | - | chr3_4:65931023-65931042 | None:intergenic | 15.0% |
| !! | ATAAGTAGAGAAAATATGAA+AGG | + | chr3_4:65929767-65929786 | Msa0514950:CDS | 20.0% |
| !!! | TATTTTAGGAAAATGTTAAC+CGG | - | chr3_4:65930304-65930323 | None:intergenic | 20.0% |
| !! | ATTACTTATTAGCATAGTAA+TGG | + | chr3_4:65931359-65931378 | Msa0514950:intron | 20.0% |
| !!! | ATAGTAATGGATAAAAAATC+CGG | + | chr3_4:65931372-65931391 | Msa0514950:intron | 20.0% |
| !! | AAATTCATGAAATTTCTAAG+TGG | + | chr3_4:65932022-65932041 | Msa0514950:three_prime_UTR | 20.0% |
| ! | ATAATCTTTCTCTTCTTGTT+AGG | + | chr3_4:65929935-65929954 | Msa0514950:intron | 25.0% |
| ! | CATTGAAAATTGTGTAATCA+AGG | - | chr3_4:65930240-65930259 | None:intergenic | 25.0% |
| ! | TAGGGTCAACATTATAAAAT+TGG | + | chr3_4:65930733-65930752 | Msa0514950:intron | 25.0% |
| ! | TAAAGTGCGAAATGATAAAT+TGG | + | chr3_4:65930772-65930791 | Msa0514950:intron | 25.0% |
| !! | GATAGTTTAAAATTCGGATT+TGG | + | chr3_4:65930804-65930823 | Msa0514950:intron | 25.0% |
| ! | AACCCTTTACAAATAACATT+GGG | - | chr3_4:65930831-65930850 | None:intergenic | 25.0% |
| ! | AAACCCTTTACAAATAACAT+TGG | - | chr3_4:65930832-65930851 | None:intergenic | 25.0% |
| ! | GTTTATTAGTAGAGACAAAT+GGG | - | chr3_4:65931116-65931135 | None:intergenic | 25.0% |
| ! | TGTTTATTAGTAGAGACAAA+TGG | - | chr3_4:65931117-65931136 | None:intergenic | 25.0% |
| ! | AATAAATGTGTCATGTTACT+CGG | - | chr3_4:65931168-65931187 | None:intergenic | 25.0% |
| ! | AGTAACATGACACATTTATT+TGG | + | chr3_4:65931168-65931187 | Msa0514950:intron | 25.0% |
| ! | TTGGTTAAAGAAGTAAGAAA+AGG | + | chr3_4:65931187-65931206 | Msa0514950:intron | 25.0% |
| ! | TAAAATGAGAGCAAATAAAC+CGG | - | chr3_4:65931306-65931325 | None:intergenic | 25.0% |
| ! | AACTTCATTATATGTATAGC+CGG | - | chr3_4:65931394-65931413 | None:intergenic | 25.0% |
| !!! | CAGTTTTAAATACTATGAGA+TGG | - | chr3_4:65931589-65931608 | None:intergenic | 25.0% |
| ! | CAAGAAATAAAACATTTGCA+AGG | - | chr3_4:65931752-65931771 | None:intergenic | 25.0% |
| !!! | GCAAATGTTTTATTTCTTGT+TGG | + | chr3_4:65931753-65931772 | Msa0514950:intron | 25.0% |
| ! | TACAATCAAGTCAAATTTGA+TGG | - | chr3_4:65931806-65931825 | None:intergenic | 25.0% |
| ! | AGAAACTAAAAATTCAGTTG+AGG | + | chr3_4:65931941-65931960 | Msa0514950:CDS | 25.0% |
| ! | GAGAAATTACTAGTAACAAT+TGG | + | chr3_4:65932150-65932169 | Msa0514950:three_prime_UTR | 25.0% |
| ! | ATTACTAGTAACAATTGGTT+AGG | + | chr3_4:65932155-65932174 | Msa0514950:three_prime_UTR | 25.0% |
| TTGTGGTAGTTGAGTATTAT+TGG | - | chr3_4:65929266-65929285 | None:intergenic | 30.0% | |
| !!! | CAATTTTGACTCTCTTCTTT+CGG | + | chr3_4:65929562-65929581 | Msa0514950:CDS | 30.0% |
| TAACAGAATTAGTGTTGTGT+GGG | + | chr3_4:65929676-65929695 | Msa0514950:CDS | 30.0% | |
| AGTAGAGAAAATATGAAAGG+TGG | + | chr3_4:65929770-65929789 | Msa0514950:CDS | 30.0% | |
| AGAAAATATGAAAGGTGGAT+TGG | + | chr3_4:65929775-65929794 | Msa0514950:CDS | 30.0% | |
| AAAGTTTGGAGAAAGAATTG+AGG | + | chr3_4:65929810-65929829 | Msa0514950:CDS | 30.0% | |
| AAATAAAGGGTTGTGTTAAC+CGG | + | chr3_4:65930139-65930158 | Msa0514950:intron | 30.0% | |
| ! | CTGGTTAAGGTATCTAAAAA+AGG | + | chr3_4:65930174-65930193 | Msa0514950:intron | 30.0% |
| ATTGAAACTCGCAATGAAAA+GGG | - | chr3_4:65930399-65930418 | None:intergenic | 30.0% | |
| TATTGAAACTCGCAATGAAA+AGG | - | chr3_4:65930400-65930419 | None:intergenic | 30.0% | |
| TTCATTGCGAGTTTCAATAA+AGG | + | chr3_4:65930401-65930420 | Msa0514950:intron | 30.0% | |
| TCATTGCGAGTTTCAATAAA+GGG | + | chr3_4:65930402-65930421 | Msa0514950:intron | 30.0% | |
| TTTGCAATTTATCTGCATTC+AGG | + | chr3_4:65930636-65930655 | Msa0514950:intron | 30.0% | |
| TTGCAATTTATCTGCATTCA+GGG | + | chr3_4:65930637-65930656 | Msa0514950:intron | 30.0% | |
| ! | GACCCAATGTTATTTGTAAA+GGG | + | chr3_4:65930826-65930845 | Msa0514950:intron | 30.0% |
| GGCAAGTAAATGTATGTATA+CGG | + | chr3_4:65931208-65931227 | Msa0514950:intron | 30.0% | |
| ! | TGAGTATTTCTATGGCTAAT+CGG | - | chr3_4:65931275-65931294 | None:intergenic | 30.0% |
| AAAATGAGAGCAAATAAACC+GGG | - | chr3_4:65931305-65931324 | None:intergenic | 30.0% | |
| ! | AGCAATGCAATCTGAAATAT+TGG | + | chr3_4:65931483-65931502 | Msa0514950:CDS | 30.0% |
| ! | AAAAGTTTTACTAGCAATGC+AGG | + | chr3_4:65931528-65931547 | Msa0514950:CDS | 30.0% |
| !! | GTTAAATAACCTGTTTTGGA+GGG | - | chr3_4:65931561-65931580 | None:intergenic | 30.0% |
| ! | AGAGGTTAAATAACCTGTTT+TGG | - | chr3_4:65931565-65931584 | None:intergenic | 30.0% |
| GTAGTGTTATATGTGTAATG+TGG | + | chr3_4:65931682-65931701 | Msa0514950:intron | 30.0% | |
| CTCTCTCTTAATATATTTCG+TGG | + | chr3_4:65931705-65931724 | Msa0514950:intron | 30.0% | |
| ! | GGTTACTTTAGAAAGCAAAA+TGG | - | chr3_4:65931731-65931750 | None:intergenic | 30.0% |
| !!! | TGTTTTATTTCTTGTTGGTC+CGG | + | chr3_4:65931758-65931777 | Msa0514950:intron | 30.0% |
| AATTTCTAAGTGGCAAATCT+TGG | + | chr3_4:65932032-65932051 | Msa0514950:three_prime_UTR | 30.0% | |
| ATCAACAATTCAATGTAGAC+AGG | - | chr3_4:65932074-65932093 | None:intergenic | 30.0% | |
| TGGTAGTTGAGTATTATTGG+TGG | - | chr3_4:65929263-65929282 | None:intergenic | 35.0% | |
| AGAGTTTGTGATGATTTGAG+TGG | - | chr3_4:65929306-65929325 | None:intergenic | 35.0% | |
| !! | TCAATGGCTTTGAGAAGAAA+CGG | - | chr3_4:65929500-65929519 | None:intergenic | 35.0% |
| CATATTACCTTCGGATTCAA+TGG | - | chr3_4:65929516-65929535 | None:intergenic | 35.0% | |
| ACGTTTCTGCATATTACCTT+CGG | - | chr3_4:65929525-65929544 | None:intergenic | 35.0% | |
| CAAAACTATCGATACAATCG+CGG | - | chr3_4:65929615-65929634 | None:intergenic | 35.0% | |
| !!! | GATTGTATCGATAGTTTTGG+CGG | + | chr3_4:65929616-65929635 | Msa0514950:CDS | 35.0% |
| !!! | ATTGTATCGATAGTTTTGGC+GGG | + | chr3_4:65929617-65929636 | Msa0514950:CDS | 35.0% |
| AATTGGTTGTTGAATGTGAG+TGG | + | chr3_4:65929653-65929672 | Msa0514950:CDS | 35.0% | |
| GTAACAGAATTAGTGTTGTG+TGG | + | chr3_4:65929675-65929694 | Msa0514950:CDS | 35.0% | |
| AACAGAATTAGTGTTGTGTG+GGG | + | chr3_4:65929677-65929696 | Msa0514950:CDS | 35.0% | |
| TTCTTGTGAAACTCAAGCTA+TGG | + | chr3_4:65929958-65929977 | Msa0514950:intron | 35.0% | |
| CATTGCGAGTTTCAATAAAG+GGG | + | chr3_4:65930403-65930422 | Msa0514950:intron | 35.0% | |
| ! | TAGTCACTTTAGTCCTTGAA+TGG | + | chr3_4:65930429-65930448 | Msa0514950:intron | 35.0% |
| ! | AGTCACTTTAGTCCTTGAAT+GGG | + | chr3_4:65930430-65930449 | Msa0514950:intron | 35.0% |
| ! | GGACCCAATGTTATTTGTAA+AGG | + | chr3_4:65930825-65930844 | Msa0514950:intron | 35.0% |
| ATTAGTAGAGACAAATGGGT+GGG | - | chr3_4:65931112-65931131 | None:intergenic | 35.0% | |
| TATTAGTAGAGACAAATGGG+TGG | - | chr3_4:65931113-65931132 | None:intergenic | 35.0% | |
| ! | GGTGATTGTGAGTATTTCTA+TGG | - | chr3_4:65931283-65931302 | None:intergenic | 35.0% |
| AAATGAGAGCAAATAAACCG+GGG | - | chr3_4:65931304-65931323 | None:intergenic | 35.0% | |
| ! | GCAATCTGAAATATTGGAGA+AGG | + | chr3_4:65931489-65931508 | Msa0514950:CDS | 35.0% |
| !! | GGTTAAATAACCTGTTTTGG+AGG | - | chr3_4:65931562-65931581 | None:intergenic | 35.0% |
| TAAATACTATGAGATGGCAG+AGG | - | chr3_4:65931583-65931602 | None:intergenic | 35.0% | |
| !!! | GTTTTATTTCTTGTTGGTCC+GGG | + | chr3_4:65931759-65931778 | Msa0514950:intron | 35.0% |
| !!! | CTTTGACTCTTTTTTCATCC+CGG | - | chr3_4:65931780-65931799 | None:intergenic | 35.0% |
| GTAGACAGGAAGAAAGAATA+TGG | - | chr3_4:65932060-65932079 | None:intergenic | 35.0% | |
| !! | ATAGTGTTTGCTGTGGATAT+AGG | + | chr3_4:65932123-65932142 | Msa0514950:three_prime_UTR | 35.0% |
| TAGATAGCTGGAAGAAGCAA+TGG | - | chr3_4:65929237-65929256 | None:intergenic | 40.0% | |
| !! | TATTGGTGGCTTTAGATAGC+TGG | - | chr3_4:65929249-65929268 | None:intergenic | 40.0% |
| ! | AAAGTGAGAGTGTAGCATTG+TGG | - | chr3_4:65929283-65929302 | None:intergenic | 40.0% |
| TGGTGAAGGAGAAAGAATGT+GGG | - | chr3_4:65929376-65929395 | None:intergenic | 40.0% | |
| !! | TTGGTTTGGAGTTGGAAAGA+AGG | - | chr3_4:65929414-65929433 | None:intergenic | 40.0% |
| GTGGATATTTCGTGTTGTGA+AGG | - | chr3_4:65929477-65929496 | None:intergenic | 40.0% | |
| !! | CAATGGCTTTGAGAAGAAAC+GGG | - | chr3_4:65929499-65929518 | None:intergenic | 40.0% |
| !! | CGCGATTGTATCGATAGTTT+TGG | + | chr3_4:65929613-65929632 | Msa0514950:CDS | 40.0% |
| GGTAGAGAGGATTGAAAGTT+TGG | + | chr3_4:65929796-65929815 | Msa0514950:CDS | 40.0% | |
| AAACCCTGATAACTCTCACA+TGG | - | chr3_4:65929838-65929857 | None:intergenic | 40.0% | |
| ATGCTGAGAAATTGGGGAAA+AGG | + | chr3_4:65929867-65929886 | Msa0514950:CDS | 40.0% | |
| AAATTGGGGAAAAGGTTTCG+TGG | + | chr3_4:65929875-65929894 | Msa0514950:CDS | 40.0% | |
| TTTGAAGGATCGCATCATTC+AGG | + | chr3_4:65929910-65929929 | Msa0514950:CDS | 40.0% | |
| TTGTTTCCTTAACCAGTGCT+CGG | + | chr3_4:65930275-65930294 | Msa0514950:intron | 40.0% | |
| CTTTAGTCCTTGAATGGGAA+AGG | + | chr3_4:65930435-65930454 | Msa0514950:intron | 40.0% | |
| GCTAACAGAGTCTACATTCA+GGG | - | chr3_4:65930505-65930524 | None:intergenic | 40.0% | |
| ! | TTGTTAGTCACTTTAGTCCC+TGG | - | chr3_4:65930533-65930552 | None:intergenic | 40.0% |
| GTGACTAACAAGTCTACGTT+CGG | + | chr3_4:65930542-65930561 | Msa0514950:intron | 40.0% | |
| TGACTAACAAGTCTACGTTC+GGG | + | chr3_4:65930543-65930562 | Msa0514950:intron | 40.0% | |
| TCGGGGACTAAATTGACTAA+CGG | + | chr3_4:65930561-65930580 | Msa0514950:intron | 40.0% | |
| ! | TGACGACTCTTTTCCTATTC+AGG | + | chr3_4:65930667-65930686 | Msa0514950:intron | 40.0% |
| ! | GACGACTCTTTTCCTATTCA+GGG | + | chr3_4:65930668-65930687 | Msa0514950:intron | 40.0% |
| AGTCAGTTTAGTCCCTGAAT+AGG | - | chr3_4:65930683-65930702 | None:intergenic | 40.0% | |
| AGTCTCAATGTGCAATTGCA+CGG | - | chr3_4:65930913-65930932 | None:intergenic | 40.0% | |
| ACTCGTAACACAAGTGATGA+AGG | - | chr3_4:65931046-65931065 | None:intergenic | 40.0% | |
| TCATCACTTGTGTTACGAGT+TGG | + | chr3_4:65931046-65931065 | Msa0514950:intron | 40.0% | |
| CACAACTCCTTGTAAAGTAC+TGG | + | chr3_4:65931138-65931157 | Msa0514950:intron | 40.0% | |
| CGGTATACCAGTACTTTACA+AGG | - | chr3_4:65931148-65931167 | None:intergenic | 40.0% | |
| GCTAATCGGCACAATATAGT+AGG | - | chr3_4:65931261-65931280 | None:intergenic | 40.0% | |
| AGAAATACTCACAATCACCC+CGG | + | chr3_4:65931284-65931303 | Msa0514950:intron | 40.0% | |
| ! | TCTCTGTTTCTTGAAGTCTG+CGG | + | chr3_4:65931423-65931442 | Msa0514950:intron | 40.0% |
| CGGGATGAAAAAAGAGTCAA+AGG | + | chr3_4:65931778-65931797 | Msa0514950:intron | 40.0% | |
| TTGTATCTGTACATTCGTGC+AGG | + | chr3_4:65931821-65931840 | Msa0514950:intron | 40.0% | |
| TTGATCTGATTCTCTCGCTT+GGG | + | chr3_4:65931862-65931881 | Msa0514950:CDS | 40.0% | |
| GAAAACCAATTCCAAAGTCG+TGG | + | chr3_4:65931903-65931922 | Msa0514950:CDS | 40.0% | |
| TGAGGATGAAGTAAAGCATG+TGG | + | chr3_4:65931959-65931978 | Msa0514950:CDS | 40.0% | |
| CTCAACCCAAACTTCAGATT+GGG | - | chr3_4:65931992-65932011 | None:intergenic | 40.0% | |
| ACTCAACCCAAACTTCAGAT+TGG | - | chr3_4:65931993-65932012 | None:intergenic | 40.0% | |
| !! | TGAAGTTTGGGTTGAGTCAA+GGG | + | chr3_4:65931996-65932015 | Msa0514950:exon | 40.0% |
| ! | AGAGTTCATAGTGTTTGCTG+TGG | + | chr3_4:65932116-65932135 | Msa0514950:three_prime_UTR | 40.0% |
| !! | GTTTGCTGTGGATATAGGTT+AGG | + | chr3_4:65932128-65932147 | Msa0514950:three_prime_UTR | 40.0% |
| TGAAGGAGAAAGAATGTGGG+AGG | - | chr3_4:65929373-65929392 | None:intergenic | 45.0% | |
| GTGGTGAAGGAGAAAGAATG+TGG | - | chr3_4:65929377-65929396 | None:intergenic | 45.0% | |
| ! | GTTTGGAGTTGGAAAGAAGG+TGG | - | chr3_4:65929411-65929430 | None:intergenic | 45.0% |
| !! | TTCGGAGTTTGGTTTGGAGT+TGG | - | chr3_4:65929422-65929441 | None:intergenic | 45.0% |
| TTGAGGTTCGGAGTTTGGTT+TGG | - | chr3_4:65929428-65929447 | None:intergenic | 45.0% | |
| GTGTTGTGAAGGATCTGAAG+CGG | - | chr3_4:65929466-65929485 | None:intergenic | 45.0% | |
| CTCAAAGCCATTGAATCCGA+AGG | + | chr3_4:65929506-65929525 | Msa0514950:CDS | 45.0% | |
| ATGCAGAAACGTGTCTTCAG+CGG | + | chr3_4:65929533-65929552 | Msa0514950:CDS | 45.0% | |
| !!! | TCGATAGTTTTGGCGGGAAA+TGG | + | chr3_4:65929623-65929642 | Msa0514950:CDS | 45.0% |
| CGGGAAATGGATCGAAGAAT+TGG | + | chr3_4:65929636-65929655 | Msa0514950:CDS | 45.0% | |
| !! | TGAAAGGTGGATTGGTAGAG+AGG | + | chr3_4:65929783-65929802 | Msa0514950:CDS | 45.0% |
| GAGCCATGTGAGAGTTATCA+GGG | + | chr3_4:65929832-65929851 | Msa0514950:CDS | 45.0% | |
| !! | GAGTTATCAGGGTTTTGTCG+AGG | + | chr3_4:65929843-65929862 | Msa0514950:CDS | 45.0% |
| TCGAGGCATGCTGAGAAATT+GGG | + | chr3_4:65929860-65929879 | Msa0514950:CDS | 45.0% | |
| TGGTAATCGCTACGCTTTGA+AGG | + | chr3_4:65929895-65929914 | Msa0514950:CDS | 45.0% | |
| TGTTTCCTTAACCAGTGCTC+GGG | + | chr3_4:65930276-65930295 | Msa0514950:intron | 45.0% | |
| GAAACTCGCAATGAAAAGGG+AGG | - | chr3_4:65930396-65930415 | None:intergenic | 45.0% | |
| GACTACTCCTTTCCCATTCA+AGG | - | chr3_4:65930445-65930464 | None:intergenic | 45.0% | |
| GGCTAACAGAGTCTACATTC+AGG | - | chr3_4:65930506-65930525 | None:intergenic | 45.0% | |
| AGACTCTGTTAGCCAATTCC+AGG | + | chr3_4:65930512-65930531 | Msa0514950:intron | 45.0% | |
| GACTCTGTTAGCCAATTCCA+GGG | + | chr3_4:65930513-65930532 | Msa0514950:intron | 45.0% | |
| ! | GTCACTTTAGTCCCTGGAAT+TGG | - | chr3_4:65930527-65930546 | None:intergenic | 45.0% |
| GACTAACAAGTCTACGTTCG+GGG | + | chr3_4:65930544-65930563 | Msa0514950:intron | 45.0% | |
| ACTAACGGAGTCTGCATTCA+GGG | + | chr3_4:65930576-65930595 | Msa0514950:intron | 45.0% | |
| TCAATGTGCAATTGCACGGA+AGG | - | chr3_4:65930909-65930928 | None:intergenic | 45.0% | |
| GGTAATCATCCCTCCAAAAC+AGG | + | chr3_4:65931549-65931568 | Msa0514950:intron | 45.0% | |
| CTTGATCTGATTCTCTCGCT+TGG | + | chr3_4:65931861-65931880 | Msa0514950:CDS | 45.0% | |
| TATCTTGCTCTCCACGACTT+TGG | - | chr3_4:65931917-65931936 | None:intergenic | 45.0% | |
| AACCCAAACTTCAGATTGGG+CGG | - | chr3_4:65931989-65932008 | None:intergenic | 45.0% | |
| !! | CTGAAGTTTGGGTTGAGTCA+AGG | + | chr3_4:65931995-65932014 | Msa0514950:exon | 45.0% |
| !! | AATAAATTAATTAAGAAATT+AGG | + | chr3_4:65930714-65930733 | Msa0514950:intron | 5.0% |
| !! | ATAAATTAATTAAGAAATTA+GGG | + | chr3_4:65930715-65930734 | Msa0514950:intron | 5.0% |
| AGAAAGAATGTGGGAGGAGG+CGG | - | chr3_4:65929367-65929386 | None:intergenic | 50.0% | |
| AGGAGAAAGAATGTGGGAGG+AGG | - | chr3_4:65929370-65929389 | None:intergenic | 50.0% | |
| TGGAGTTGGAAAGAAGGTGG+CGG | - | chr3_4:65929408-65929427 | None:intergenic | 50.0% | |
| AGGAGTTGAGGTTCGGAGTT+TGG | - | chr3_4:65929433-65929452 | None:intergenic | 50.0% | |
| ACTCCGAACCTCAACTCCTT+CGG | + | chr3_4:65929434-65929453 | Msa0514950:CDS | 50.0% | |
| AGTCCGAAGGAGTTGAGGTT+CGG | - | chr3_4:65929440-65929459 | None:intergenic | 50.0% | |
| !! | TGGCTTTGAGAAGAAACGGG+TGG | - | chr3_4:65929496-65929515 | None:intergenic | 50.0% |
| TGACTCTCTTCTTTCGGCGA+TGG | + | chr3_4:65929568-65929587 | Msa0514950:CDS | 50.0% | |
| !! | TGTGTGGGGAGTTTTGACAC+CGG | + | chr3_4:65929691-65929710 | Msa0514950:CDS | 50.0% |
| ! | TTGTGGTTGGTGCGTGGATA+CGG | + | chr3_4:65929726-65929745 | Msa0514950:CDS | 50.0% |
| GGAGCCATGTGAGAGTTATC+AGG | + | chr3_4:65929831-65929850 | Msa0514950:CDS | 50.0% | |
| GTCGAGGCATGCTGAGAAAT+TGG | + | chr3_4:65929859-65929878 | Msa0514950:CDS | 50.0% | |
| CGAGGCATGCTGAGAAATTG+GGG | + | chr3_4:65929861-65929880 | Msa0514950:CDS | 50.0% | |
| AGATACCTTAACCAGTGCCC+CGG | - | chr3_4:65930169-65930188 | None:intergenic | 50.0% | |
| GTTTCCTTAACCAGTGCTCG+GGG | + | chr3_4:65930277-65930296 | Msa0514950:intron | 50.0% | |
| TTTCCTTAACCAGTGCTCGG+GGG | + | chr3_4:65930278-65930297 | Msa0514950:intron | 50.0% | |
| GACTAACGGAGTCTGCATTC+AGG | + | chr3_4:65930575-65930594 | Msa0514950:intron | 50.0% | |
| TCAAGCACAGAAGAACTCCG+AGG | + | chr3_4:65931447-65931466 | Msa0514950:CDS | 50.0% | |
| TGCTAGAGCTCTTGTAGCCT+CGG | - | chr3_4:65931467-65931486 | None:intergenic | 50.0% | |
| ATTCTCTCGCTTGGGAAGTC+TGG | + | chr3_4:65931870-65931889 | Msa0514950:CDS | 50.0% | |
| TTGGGAAGTCTGGTAAGCTG+TGG | + | chr3_4:65931880-65931899 | Msa0514950:CDS | 50.0% | |
| TGGGAAGTCTGGTAAGCTGT+GGG | + | chr3_4:65931881-65931900 | Msa0514950:CDS | 50.0% | |
| !! | GCTCTCCACGACTTTGGAAT+TGG | - | chr3_4:65931911-65931930 | None:intergenic | 50.0% |
| ! | AGACCGCCCAATCTGAAGTT+TGG | + | chr3_4:65931983-65932002 | Msa0514950:exon | 50.0% |
| ! | GACCGCCCAATCTGAAGTTT+GGG | + | chr3_4:65931984-65932003 | Msa0514950:exon | 50.0% |
| !! | AGTTTGGGTTGAGTCAAGGG+AGG | + | chr3_4:65931999-65932018 | Msa0514950:three_prime_UTR | 50.0% |
| GGAGTTGGAAAGAAGGTGGC+GGG | - | chr3_4:65929407-65929426 | None:intergenic | 55.0% | |
| GGTGAAGTCCGAAGGAGTTG+AGG | - | chr3_4:65929445-65929464 | None:intergenic | 55.0% | |
| ! | TCTGAAGCGGTGAAGTCCGA+AGG | - | chr3_4:65929453-65929472 | None:intergenic | 55.0% |
| !! | GTTTTGACACCGGTGGTGAG+TGG | + | chr3_4:65929701-65929720 | Msa0514950:CDS | 55.0% |
| ACCACAACACCACTCACCAC+CGG | - | chr3_4:65929713-65929732 | None:intergenic | 55.0% | |
| !! | GTGGTGAGTGGTGTTGTGGT+TGG | + | chr3_4:65929713-65929732 | Msa0514950:CDS | 55.0% |
| ATACCTTAACCAGTGCCCCG+GGG | - | chr3_4:65930167-65930186 | None:intergenic | 55.0% | |
| GATACCTTAACCAGTGCCCC+GGG | - | chr3_4:65930168-65930187 | None:intergenic | 55.0% | |
| !! | AAAGAAGGTGGCGGGAGCAG+TGG | - | chr3_4:65929399-65929418 | None:intergenic | 60.0% |
| !! | GTGGGGAGTTTTGACACCGG+TGG | + | chr3_4:65929694-65929713 | Msa0514950:CDS | 60.0% |
| ! | ACCGGTGGTGAGTGGTGTTG+TGG | + | chr3_4:65929709-65929728 | Msa0514950:CDS | 60.0% |
| !! | GTGGTGTTGTGGTTGGTGCG+TGG | + | chr3_4:65929720-65929739 | Msa0514950:CDS | 60.0% |
| TTGGTGCGTGGATACGGACG+CGG | + | chr3_4:65929732-65929751 | Msa0514950:CDS | 60.0% | |
| GGTTGTGTTAACCGGTGCCC+CGG | + | chr3_4:65930147-65930166 | Msa0514950:intron | 60.0% | |
| GTTGTGTTAACCGGTGCCCC+GGG | + | chr3_4:65930148-65930167 | Msa0514950:intron | 60.0% | |
| TTGTGTTAACCGGTGCCCCG+GGG | + | chr3_4:65930149-65930168 | Msa0514950:intron | 60.0% | |
| CGTGGATACGGACGCGGCAA+TGG | + | chr3_4:65929738-65929757 | Msa0514950:CDS | 65.0% | |
| GGATACGGACGCGGCAATGG+AGG | + | chr3_4:65929741-65929760 | Msa0514950:CDS | 65.0% | |
| CTTAACCAGTGCTCGGGGGC+CGG | + | chr3_4:65930282-65930301 | Msa0514950:intron | 65.0% | |
| ! | GGCGGGAGCAGTGGTGGTGA+AGG | - | chr3_4:65929390-65929409 | None:intergenic | 70.0% |
| !! | GAAGGTGGCGGGAGCAGTGG+TGG | - | chr3_4:65929396-65929415 | None:intergenic | 70.0% |
| TAACCAGTGCCCCGGGGCAC+CGG | - | chr3_4:65930161-65930180 | None:intergenic | 70.0% | |
| !! | GTGCCCCGGGGCACTGGTTA+AGG | + | chr3_4:65930161-65930180 | Msa0514950:intron | 70.0% |
| !! | CGGCCCCCGAGCACTGGTTA+AGG | - | chr3_4:65930284-65930303 | None:intergenic | 70.0% |
| GTTAACCGGCCCCCGAGCAC+TGG | - | chr3_4:65930290-65930309 | None:intergenic | 70.0% | |
| TAACCGGTGCCCCGGGGCAC+TGG | + | chr3_4:65930155-65930174 | Msa0514950:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 65929223 | 65932191 | 65929223 | ID=Msa0514950;Name=Msa0514950 |
| chr3_4 | mRNA | 65929223 | 65932191 | 65929223 | ID=Msa0514950-mRNA-1;Parent=Msa0514950;Name=Msa0514950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=124|1|1|1|1|1|3|193|283 |
| chr3_4 | exon | 65929223 | 65929931 | 65929223 | ID=Msa0514950-mRNA-1:exon:16900;Parent=Msa0514950-mRNA-1 |
| chr3_4 | exon | 65931439 | 65931549 | 65931439 | ID=Msa0514950-mRNA-1:exon:16901;Parent=Msa0514950-mRNA-1 |
| chr3_4 | exon | 65931843 | 65932191 | 65931843 | ID=Msa0514950-mRNA-1:exon:16902;Parent=Msa0514950-mRNA-1 |
| chr3_4 | five_prime_UTR | 65929223 | 65929346 | 65929223 | ID=Msa0514950-mRNA-1:five_prime_utr;Parent=Msa0514950-mRNA-1 |
| chr3_4 | CDS | 65929347 | 65929931 | 65929347 | ID=Msa0514950-mRNA-1:cds;Parent=Msa0514950-mRNA-1 |
| chr3_4 | CDS | 65931439 | 65931549 | 65931439 | ID=Msa0514950-mRNA-1:cds;Parent=Msa0514950-mRNA-1 |
| chr3_4 | CDS | 65931843 | 65931998 | 65931843 | ID=Msa0514950-mRNA-1:cds;Parent=Msa0514950-mRNA-1 |
| chr3_4 | three_prime_UTR | 65931999 | 65932191 | 65931999 | ID=Msa0514950-mRNA-1:three_prime_utr;Parent=Msa0514950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
