Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380030 | XP_003601932.2 | 88.278 | 273 | 23 | 1 | 1 | 273 | 1 | 264 | 2.56e-147 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380030 | G7J3P8 | 88.278 | 273 | 23 | 1 | 1 | 273 | 1 | 264 | 1.22e-147 | 424 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089630 | Msa1380030 | 0.804147 | 2.483287e-49 | -8.615850e-47 |
| Msa1380030 | Msa1435500 | 0.846048 | 2.773078e-59 | -8.615850e-47 |
| Msa1380030 | Msa1466540 | 0.805027 | 1.627380e-49 | -8.615850e-47 |
| Msa0661650 | Msa1380030 | 0.805748 | 1.149033e-49 | -8.615850e-47 |
| Msa0793800 | Msa1380030 | 0.800393 | 1.472015e-48 | -8.615850e-47 |
| Msa0124060 | Msa1380030 | 0.808611 | 2.844401e-50 | -8.615850e-47 |
| Msa0423080 | Msa1380030 | 0.802596 | 5.205809e-49 | -8.615850e-47 |
| Msa0428080 | Msa1380030 | 0.808673 | 2.759803e-50 | -8.615850e-47 |
| Msa1084960 | Msa1380030 | 0.803517 | 3.356958e-49 | -8.615850e-47 |
| Msa1100050 | Msa1380030 | 0.824526 | 7.695900e-54 | -8.615850e-47 |
| Msa0483850 | Msa1380030 | 0.805995 | 1.019889e-49 | -8.615850e-47 |
| Msa0514950 | Msa1380030 | 0.887887 | 9.609686e-73 | -8.615850e-47 |
| Msa0876190 | Msa1380030 | 0.802607 | 5.178496e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380030 | MtrunA17_Chr3g0123831 | 88.278 | 273 | 23 | 1 | 1 | 273 | 1 | 264 | 2.36e-151 | 424 |
| Msa1380030 | MtrunA17_Chr8g0381861 | 44.521 | 292 | 111 | 11 | 20 | 286 | 25 | 290 | 3.20e-46 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380030 | AT5G65250.1 | 47.573 | 206 | 92 | 3 | 59 | 261 | 79 | 271 | 9.57e-48 | 161 |
Find 95 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCGAGGCATGCTGAGAAAT+TGG | 0.207238 | tig0020319:-7370 | Msa1380030:CDS |
| GGTAGAGAGGATTGAAAGTT+TGG | 0.218905 | tig0020319:-7433 | Msa1380030:CDS |
| AGACCGCCCAATCTGAAGTT+TGG | 0.306522 | tig0020319:-5250 | Msa1380030:exon |
| AGCAATGCAATCTGAAATAT+TGG | 0.309578 | tig0020319:-5748 | Msa1380030:CDS |
| TTTGAAGGATCGCATCATTC+AGG | 0.323905 | tig0020319:-7319 | Msa1380030:intron |
| CGCGATTGTATCGATAGTTT+TGG | 0.332751 | tig0020319:-7640 | Msa1380030:CDS |
| GGAGCCATGTGAGAGTTATC+AGG | 0.333603 | tig0020319:-7398 | Msa1380030:CDS |
| GCTCTCCACGACTTTGGAAT+TGG | 0.336434 | tig0020319:+5325 | None:intergenic |
| AGGAGTTGAGGTTCGGAGTT+TGG | 0.346257 | tig0020319:+7823 | None:intergenic |
| TCGAGGCATGCTGAGAAATT+GGG | 0.352597 | tig0020319:-7369 | Msa1380030:CDS |
| CATATTACCTTCGGATTCAA+TGG | 0.368098 | tig0020319:+7740 | None:intergenic |
| AAGAATTGGTTGGCGGGAAA+TGG | 0.373754 | tig0020319:-7603 | Msa1380030:CDS |
| TTGAGGTTCGGAGTTTGGTT+TGG | 0.376745 | tig0020319:+7828 | None:intergenic |
| GTAGACAGGAAGAAAGAATA+TGG | 0.394176 | tig0020319:+5175 | None:intergenic |
| CGGGAAATGGATCGAAGAAT+TGG | 0.397036 | tig0020319:-7590 | Msa1380030:CDS |
| CGGGAAATGGATCGAAGAAT+TGG | 0.397036 | tig0020319:-7617 | Msa1380030:CDS |
| TGGTAATCGCTACGCTTTGA+AGG | 0.398242 | tig0020319:-7334 | Msa1380030:CDS |
| AATTTCTAAGTGGCAAATCT+TGG | 0.406249 | tig0020319:-5200 | Msa1380030:three_prime_UTR |
| TATCTTGCTCTCCACGACTT+TGG | 0.415944 | tig0020319:+5319 | None:intergenic |
| GACCGCCCAATCTGAAGTTT+GGG | 0.417089 | tig0020319:-5249 | Msa1380030:exon |
| ATTCTCTCGCTTGGGAAGTC+TGG | 0.421182 | tig0020319:-5363 | Msa1380030:CDS |
| TTCGGAGTTTGGTTTGGAGT+TGG | 0.422822 | tig0020319:+7834 | None:intergenic |
| ATAGTGTTTGCTGTGGATAT+AGG | 0.422925 | tig0020319:-5109 | Msa1380030:three_prime_UTR |
| AGAAAGAATGTGGGAGGAGG+CGG | 0.429987 | tig0020319:+7889 | None:intergenic |
| ATTACTAGTAACAATTGGTT+AGG | 0.434786 | tig0020319:-5077 | Msa1380030:three_prime_UTR |
| GAGAAATTACTAGTAACAAT+TGG | 0.437810 | tig0020319:-5082 | Msa1380030:three_prime_UTR |
| CTCAACCCAAACTTCAGATT+GGG | 0.439223 | tig0020319:+5244 | None:intergenic |
| TTGATCTGATTCTCTCGCTT+GGG | 0.444939 | tig0020319:-5371 | Msa1380030:CDS |
| ACTCAACCCAAACTTCAGAT+TGG | 0.446259 | tig0020319:+5243 | None:intergenic |
| CTTGATCTGATTCTCTCGCT+TGG | 0.446445 | tig0020319:-5372 | Msa1380030:CDS |
| ACGTTTCTGCATATTACCTT+CGG | 0.457187 | tig0020319:+7731 | None:intergenic |
| GTTTGCTGTGGATATAGGTT+AGG | 0.459806 | tig0020319:-5104 | Msa1380030:three_prime_UTR |
| TGCTAGAGCTCTTGTAGCCT+CGG | 0.462063 | tig0020319:+5767 | None:intergenic |
| ATGCTGAGAAATTGGGGAAA+AGG | 0.467269 | tig0020319:-7362 | Msa1380030:CDS |
| TCAATGGCTTTGAGAAGAAA+CGG | 0.473350 | tig0020319:+7756 | None:intergenic |
| TGACTCTCTTCTTTCGGCGA+TGG | 0.480004 | tig0020319:-7685 | Msa1380030:CDS |
| TTGTGGTTGGTGCGTGGATA+CGG | 0.480500 | tig0020319:-7503 | Msa1380030:CDS |
| AGAAAATATGAAAGGTGGAT+TGG | 0.482567 | tig0020319:-7454 | Msa1380030:CDS |
| TTGGTTAGGACAGTATCAAT+TGG | 0.491328 | tig0020319:-5063 | Msa1380030:three_prime_UTR |
| TTGGTTTGGAGTTGGAAAGA+AGG | 0.491483 | tig0020319:+7842 | None:intergenic |
| ACTCCGAACCTCAACTCCTT+CGG | 0.493147 | tig0020319:-7819 | Msa1380030:CDS |
| CAATGGCTTTGAGAAGAAAC+GGG | 0.493308 | tig0020319:+7757 | None:intergenic |
| TGAAAGGTGGATTGGTAGAG+AGG | 0.494701 | tig0020319:-7446 | Msa1380030:CDS |
| TGAAGTTTGGGTTGAGTCAA+GGG | 0.499009 | tig0020319:-5237 | Msa1380030:three_prime_UTR |
| AAAGTTTGGAGAAAGAATTG+AGG | 0.499148 | tig0020319:-7419 | Msa1380030:CDS |
| GGCGGGAGCAGTGGTGGTGA+AGG | 0.501438 | tig0020319:+7866 | None:intergenic |
| CTGAAGTTTGGGTTGAGTCA+AGG | 0.508971 | tig0020319:-5238 | Msa1380030:exon |
| ATCAACAATTCAATGTAGAC+AGG | 0.509567 | tig0020319:+5161 | None:intergenic |
| GGAGTTGGAAAGAAGGTGGC+GGG | 0.524988 | tig0020319:+7849 | None:intergenic |
| CGTGGATACGGACGCGGCAA+TGG | 0.527112 | tig0020319:-7491 | Msa1380030:CDS |
| GACACTGGTGAGTGGTGTTG+TGG | 0.529538 | tig0020319:-7520 | Msa1380030:CDS |
| AGGAGAAAGAATGTGGGAGG+AGG | 0.529831 | tig0020319:+7886 | None:intergenic |
| AAAGAAGGTGGCGGGAGCAG+TGG | 0.534925 | tig0020319:+7857 | None:intergenic |
| CTGGTGAGTGGTGTTGTGGT+TGG | 0.538436 | tig0020319:-7516 | Msa1380030:CDS |
| AGTAGAGAAAATATGAAAGG+TGG | 0.546819 | tig0020319:-7459 | Msa1380030:CDS |
| AGTCCGAAGGAGTTGAGGTT+CGG | 0.548437 | tig0020319:+7816 | None:intergenic |
| GCAATCTGAAATATTGGAGA+AGG | 0.554196 | tig0020319:-5742 | Msa1380030:CDS |
| GTTTGGAGTTGGAAAGAAGG+TGG | 0.554584 | tig0020319:+7845 | None:intergenic |
| GTGGATATTTCGTGTTGTGA+AGG | 0.555229 | tig0020319:+7779 | None:intergenic |
| GAAGGTGGCGGGAGCAGTGG+TGG | 0.556157 | tig0020319:+7860 | None:intergenic |
| GGATCGAAGAATTGGTTGGC+GGG | 0.556955 | tig0020319:-7609 | Msa1380030:CDS |
| TGGAGTTGGAAAGAAGGTGG+CGG | 0.558091 | tig0020319:+7848 | None:intergenic |
| ATAAGTAGAGAAAATATGAA+AGG | 0.568186 | tig0020319:-7462 | Msa1380030:CDS |
| CGAGGCATGCTGAGAAATTG+GGG | 0.575139 | tig0020319:-7368 | Msa1380030:CDS |
| GAGCCATGTGAGAGTTATCA+GGG | 0.576135 | tig0020319:-7397 | Msa1380030:CDS |
| CTCAAAGCCATTGAATCCGA+AGG | 0.582277 | tig0020319:-7747 | Msa1380030:CDS |
| TTGGTGCGTGGATACGGACG+CGG | 0.584140 | tig0020319:-7497 | Msa1380030:CDS |
| GTGGTGAAGGAGAAAGAATG+TGG | 0.585252 | tig0020319:+7879 | None:intergenic |
| TAACAGAATTAGTGTTGTGT+GGG | 0.586185 | tig0020319:-7550 | Msa1380030:CDS |
| TTGGGAAGTCTGGTAAGCTG+TGG | 0.588362 | tig0020319:-5353 | Msa1380030:CDS |
| GGATACGGACGCGGCAATGG+AGG | 0.597439 | tig0020319:-7488 | Msa1380030:CDS |
| TGGGAAGTCTGGTAAGCTGT+GGG | 0.598835 | tig0020319:-5352 | Msa1380030:CDS |
| TGAAGGAGAAAGAATGTGGG+AGG | 0.602785 | tig0020319:+7883 | None:intergenic |
| AAATTGGGGAAAAGGTTTCG+TGG | 0.603100 | tig0020319:-7354 | Msa1380030:CDS |
| AAATGGATCGAAGAATTGGT+TGG | 0.604679 | tig0020319:-7613 | Msa1380030:CDS |
| GAAAACCAATTCCAAAGTCG+TGG | 0.604937 | tig0020319:-5330 | Msa1380030:CDS |
| GGTGAAGTCCGAAGGAGTTG+AGG | 0.605524 | tig0020319:+7811 | None:intergenic |
| AGAGTTCATAGTGTTTGCTG+TGG | 0.606392 | tig0020319:-5116 | Msa1380030:three_prime_UTR |
| TCTGAAGCGGTGAAGTCCGA+AGG | 0.609749 | tig0020319:+7803 | None:intergenic |
| GTGGTGTTGTGGTTGGTGCG+TGG | 0.613662 | tig0020319:-7509 | Msa1380030:CDS |
| TGGATCGAAGAATTGGTTGG+CGG | 0.618513 | tig0020319:-7610 | Msa1380030:CDS |
| TGAGGATGAAGTAAAGCATG+TGG | 0.622448 | tig0020319:-5274 | Msa1380030:CDS |
| TGGTGAAGGAGAAAGAATGT+GGG | 0.625948 | tig0020319:+7880 | None:intergenic |
| AAATTCATGAAATTTCTAAG+TGG | 0.628182 | tig0020319:-5210 | Msa1380030:three_prime_UTR |
| AATTGGTTGTTGAATGTGAG+TGG | 0.628760 | tig0020319:-7573 | Msa1380030:CDS |
| AACCCAAACTTCAGATTGGG+CGG | 0.630047 | tig0020319:+5247 | None:intergenic |
| ATGCAGAAACGTGTCTTCAG+CGG | 0.637945 | tig0020319:-7720 | Msa1380030:CDS |
| GTAACAGAATTAGTGTTGTG+TGG | 0.649707 | tig0020319:-7551 | Msa1380030:CDS |
| AAACCCTGATAACTCTCACA+TGG | 0.675026 | tig0020319:+7394 | None:intergenic |
| TGGCTTTGAGAAGAAACGGG+TGG | 0.686024 | tig0020319:+7760 | None:intergenic |
| GTGTTGTGAAGGATCTGAAG+CGG | 0.694023 | tig0020319:+7790 | None:intergenic |
| AGTTTGGGTTGAGTCAAGGG+AGG | 0.698504 | tig0020319:-5234 | Msa1380030:three_prime_UTR |
| CAAAACTATCGATACAATCG+CGG | 0.700679 | tig0020319:+7641 | None:intergenic |
| AACAGAATTAGTGTTGTGTG+GGG | 0.734211 | tig0020319:-7549 | Msa1380030:CDS |
| TCAAGCACAGAAGAACTCCG+AGG | 0.768660 | tig0020319:-5784 | Msa1380030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATAGATATTAAAATAAA+GGG | - | tig0020319:5864-5883 | Msa1380030:intron | 10.0% |
| !!! | CAAAGTATTAAATATATTTT+AGG | + | tig0020319:6056-6075 | None:intergenic | 10.0% |
| !! | CTAAAATATATTTAATACTT+TGG | - | tig0020319:6054-6073 | Msa1380030:intron | 10.0% |
| !!! | ATTTTATGAAACTTAAAATT+TGG | - | tig0020319:6088-6107 | Msa1380030:intron | 10.0% |
| !! | TTCTTAATTAATTTATTGAA+GGG | + | tig0020319:6449-6468 | None:intergenic | 10.0% |
| !! | TTTCTTAATTAATTTATTGA+AGG | + | tig0020319:6450-6469 | None:intergenic | 10.0% |
| !!! | CCTTTATTTTAATATCTATA+TGG | + | tig0020319:5866-5885 | None:intergenic | 15.0% |
| !! | CCATATAGATATTAAAATAA+AGG | - | tig0020319:5863-5882 | Msa1380030:intron | 15.0% |
| !!! | AACAAAGATAGTTTAAAATT+CGG | - | tig0020319:6536-6555 | Msa1380030:intron | 15.0% |
| !! | TAAAAAACAAAGAAACATTA+TGG | + | tig0020319:6610-6629 | None:intergenic | 15.0% |
| !!! | TTTAAGTTTCTTAATCATTT+AGG | + | tig0020319:6761-6780 | None:intergenic | 15.0% |
| !! | ATAAGTAGAGAAAATATGAA+AGG | - | tig0020319:5507-5526 | Msa1380030:intron | 20.0% |
| !!! | TATTTTAGGAAAATGTTAAC+CGG | + | tig0020319:6042-6061 | None:intergenic | 20.0% |
| !! | ATTACTTATTAGCATAGTAA+TGG | - | tig0020319:7097-7116 | Msa1380030:intron | 20.0% |
| !!! | ATAGTAATGGATAAAAAATC+CGG | - | tig0020319:7110-7129 | Msa1380030:intron | 20.0% |
| !! | AAATTCATGAAATTTCTAAG+TGG | - | tig0020319:7759-7778 | Msa1380030:CDS | 20.0% |
| ! | ATAATCTTTCTCTTCTTGTT+AGG | - | tig0020319:5675-5694 | Msa1380030:intron | 25.0% |
| ! | CATTGAAAATTGTGTAATCA+AGG | + | tig0020319:5978-5997 | None:intergenic | 25.0% |
| ! | TAGGGTCAACATTATAAAAT+TGG | - | tig0020319:6471-6490 | Msa1380030:intron | 25.0% |
| ! | TAAAGTGCGAAATGATAAAT+TGG | - | tig0020319:6510-6529 | Msa1380030:intron | 25.0% |
| !! | GATAGTTTAAAATTCGGATT+TGG | - | tig0020319:6542-6561 | Msa1380030:intron | 25.0% |
| ! | AACCCTTTACAAATAACATT+GGG | + | tig0020319:6569-6588 | None:intergenic | 25.0% |
| ! | AAACCCTTTACAAATAACAT+TGG | + | tig0020319:6570-6589 | None:intergenic | 25.0% |
| ! | GTTTATTAGTAGAGACAAAT+GGG | + | tig0020319:6854-6873 | None:intergenic | 25.0% |
| ! | TGTTTATTAGTAGAGACAAA+TGG | + | tig0020319:6855-6874 | None:intergenic | 25.0% |
| ! | AATAAATGTGTCATGTTACT+CGG | + | tig0020319:6906-6925 | None:intergenic | 25.0% |
| ! | AGTAACATGACACATTTATT+TGG | - | tig0020319:6906-6925 | Msa1380030:intron | 25.0% |
| ! | TTGGTTAAAGAAGTAAGAAA+AGG | - | tig0020319:6925-6944 | Msa1380030:intron | 25.0% |
| ! | TAAAATGAGAGCAAATAAAC+CGG | + | tig0020319:7044-7063 | None:intergenic | 25.0% |
| ! | AACTTCATTATATGTATAGC+CGG | + | tig0020319:7132-7151 | None:intergenic | 25.0% |
| !!! | CAGTTTTAAATACTATGAGA+TGG | + | tig0020319:7327-7346 | None:intergenic | 25.0% |
| ! | CAAGAAATAAAACATTTGCA+AGG | + | tig0020319:7488-7507 | None:intergenic | 25.0% |
| !!! | GCAAATGTTTTATTTCTTGT+TGG | - | tig0020319:7489-7508 | Msa1380030:CDS | 25.0% |
| ! | TACAATCAAGTCAAATTTGA+TGG | + | tig0020319:7542-7561 | None:intergenic | 25.0% |
| ! | AGAAACTAAAAATTCAGTTG+AGG | - | tig0020319:7677-7696 | Msa1380030:CDS | 25.0% |
| ! | GAGAAATTACTAGTAACAAT+TGG | - | tig0020319:7887-7906 | Msa1380030:CDS | 25.0% |
| ! | ATTACTAGTAACAATTGGTT+AGG | - | tig0020319:7892-7911 | Msa1380030:CDS | 25.0% |
| !!! | CAATTTTGACTCTCTTCTTT+CGG | - | tig0020319:5278-5297 | Msa1380030:CDS | 30.0% |
| TAACAGAATTAGTGTTGTGT+GGG | - | tig0020319:5419-5438 | Msa1380030:intron | 30.0% | |
| AGTAGAGAAAATATGAAAGG+TGG | - | tig0020319:5510-5529 | Msa1380030:intron | 30.0% | |
| AGAAAATATGAAAGGTGGAT+TGG | - | tig0020319:5515-5534 | Msa1380030:intron | 30.0% | |
| AAAGTTTGGAGAAAGAATTG+AGG | - | tig0020319:5550-5569 | Msa1380030:intron | 30.0% | |
| AAATAAAGGGTTGTGTTAAC+CGG | - | tig0020319:5877-5896 | Msa1380030:intron | 30.0% | |
| ! | CTGGTTAAGGTATCTAAAAA+AGG | - | tig0020319:5912-5931 | Msa1380030:intron | 30.0% |
| ATTGAAACTCGCAATGAAAA+GGG | + | tig0020319:6137-6156 | None:intergenic | 30.0% | |
| TATTGAAACTCGCAATGAAA+AGG | + | tig0020319:6138-6157 | None:intergenic | 30.0% | |
| TTCATTGCGAGTTTCAATAA+AGG | - | tig0020319:6139-6158 | Msa1380030:intron | 30.0% | |
| TCATTGCGAGTTTCAATAAA+GGG | - | tig0020319:6140-6159 | Msa1380030:intron | 30.0% | |
| TTTGCAATTTATCTGCATTC+AGG | - | tig0020319:6374-6393 | Msa1380030:intron | 30.0% | |
| TTGCAATTTATCTGCATTCA+GGG | - | tig0020319:6375-6394 | Msa1380030:intron | 30.0% | |
| ! | GACCCAATGTTATTTGTAAA+GGG | - | tig0020319:6564-6583 | Msa1380030:intron | 30.0% |
| GGCAAGTAAATGTATGTATA+CGG | - | tig0020319:6946-6965 | Msa1380030:intron | 30.0% | |
| ! | TGAGTATTTCTATGGCTAAT+CGG | + | tig0020319:7013-7032 | None:intergenic | 30.0% |
| AAAATGAGAGCAAATAAACC+GGG | + | tig0020319:7043-7062 | None:intergenic | 30.0% | |
| ! | AGCAATGCAATCTGAAATAT+TGG | - | tig0020319:7221-7240 | Msa1380030:intron | 30.0% |
| ! | AAAAGTTTTACTAGCAATGC+AGG | - | tig0020319:7266-7285 | Msa1380030:intron | 30.0% |
| !! | GTTAAATAACCTGTTTTGGA+GGG | + | tig0020319:7299-7318 | None:intergenic | 30.0% |
| ! | AGAGGTTAAATAACCTGTTT+TGG | + | tig0020319:7303-7322 | None:intergenic | 30.0% |
| GTAGTGTTATATGTGTAATG+TGG | - | tig0020319:7420-7439 | Msa1380030:CDS | 30.0% | |
| ! | GGTTACTTTAGAAAGCAAAA+TGG | + | tig0020319:7467-7486 | None:intergenic | 30.0% |
| !!! | TGTTTTATTTCTTGTTGGTC+CGG | - | tig0020319:7494-7513 | Msa1380030:CDS | 30.0% |
| AATTTCTAAGTGGCAAATCT+TGG | - | tig0020319:7769-7788 | Msa1380030:CDS | 30.0% | |
| ATCAACAATTCAATGTAGAC+AGG | + | tig0020319:7811-7830 | None:intergenic | 30.0% | |
| !! | TCAATGGCTTTGAGAAGAAA+CGG | + | tig0020319:5216-5235 | None:intergenic | 35.0% |
| CATATTACCTTCGGATTCAA+TGG | + | tig0020319:5232-5251 | None:intergenic | 35.0% | |
| ACGTTTCTGCATATTACCTT+CGG | + | tig0020319:5241-5260 | None:intergenic | 35.0% | |
| CAAAACTATCGATACAATCG+CGG | + | tig0020319:5331-5350 | None:intergenic | 35.0% | |
| !!! | GATTGTATCGATAGTTTTGG+CGG | - | tig0020319:5332-5351 | Msa1380030:CDS | 35.0% |
| !!! | ATTGTATCGATAGTTTTGGC+GGG | - | tig0020319:5333-5352 | Msa1380030:CDS | 35.0% |
| AAATGGATCGAAGAATTGGT+TGG | - | tig0020319:5356-5375 | Msa1380030:CDS | 35.0% | |
| AATTGGTTGTTGAATGTGAG+TGG | - | tig0020319:5396-5415 | Msa1380030:intron | 35.0% | |
| GTAACAGAATTAGTGTTGTG+TGG | - | tig0020319:5418-5437 | Msa1380030:intron | 35.0% | |
| AACAGAATTAGTGTTGTGTG+GGG | - | tig0020319:5420-5439 | Msa1380030:intron | 35.0% | |
| TTCTTGTGAAACTCAAGCTA+TGG | - | tig0020319:5698-5717 | Msa1380030:intron | 35.0% | |
| TTGTTTCCTTAACCAGTGTT+CGG | - | tig0020319:6013-6032 | Msa1380030:intron | 35.0% | |
| CATTGCGAGTTTCAATAAAG+GGG | - | tig0020319:6141-6160 | Msa1380030:intron | 35.0% | |
| ! | GGACCCAATGTTATTTGTAA+AGG | - | tig0020319:6563-6582 | Msa1380030:intron | 35.0% |
| ATTAGTAGAGACAAATGGGT+GGG | + | tig0020319:6850-6869 | None:intergenic | 35.0% | |
| TATTAGTAGAGACAAATGGG+TGG | + | tig0020319:6851-6870 | None:intergenic | 35.0% | |
| ! | GGTGATTGTGAGTATTTCTA+TGG | + | tig0020319:7021-7040 | None:intergenic | 35.0% |
| AAATGAGAGCAAATAAACCG+GGG | + | tig0020319:7042-7061 | None:intergenic | 35.0% | |
| ! | GCAATCTGAAATATTGGAGA+AGG | - | tig0020319:7227-7246 | Msa1380030:intron | 35.0% |
| !! | GGTTAAATAACCTGTTTTGG+AGG | + | tig0020319:7300-7319 | None:intergenic | 35.0% |
| TAAATACTATGAGATGGCAG+AGG | + | tig0020319:7321-7340 | None:intergenic | 35.0% | |
| !!! | GTTTTATTTCTTGTTGGTCC+GGG | - | tig0020319:7495-7514 | Msa1380030:CDS | 35.0% |
| !!! | CTTTGACTCTTTTTTCATCC+CGG | + | tig0020319:7516-7535 | None:intergenic | 35.0% |
| GTAGACAGGAAGAAAGAATA+TGG | + | tig0020319:7797-7816 | None:intergenic | 35.0% | |
| !! | ATAGTGTTTGCTGTGGATAT+AGG | - | tig0020319:7860-7879 | Msa1380030:CDS | 35.0% |
| TGGTGAAGGAGAAAGAATGT+GGG | + | tig0020319:5092-5111 | None:intergenic | 40.0% | |
| !! | TTGGTTTGGAGTTGGAAAGA+AGG | + | tig0020319:5130-5149 | None:intergenic | 40.0% |
| GTGGATATTTCGTGTTGTGA+AGG | + | tig0020319:5193-5212 | None:intergenic | 40.0% | |
| !! | CAATGGCTTTGAGAAGAAAC+GGG | + | tig0020319:5215-5234 | None:intergenic | 40.0% |
| !! | CGCGATTGTATCGATAGTTT+TGG | - | tig0020319:5329-5348 | Msa1380030:CDS | 40.0% |
| GGTAGAGAGGATTGAAAGTT+TGG | - | tig0020319:5536-5555 | Msa1380030:intron | 40.0% | |
| AAACCCTGATAACTCTCACA+TGG | + | tig0020319:5578-5597 | None:intergenic | 40.0% | |
| ATGCTGAGAAATTGGGGAAA+AGG | - | tig0020319:5607-5626 | Msa1380030:intron | 40.0% | |
| AAATTGGGGAAAAGGTTTCG+TGG | - | tig0020319:5615-5634 | Msa1380030:intron | 40.0% | |
| TTTGAAGGATCGCATCATTC+AGG | - | tig0020319:5650-5669 | Msa1380030:intron | 40.0% | |
| TGTTTCCTTAACCAGTGTTC+GGG | - | tig0020319:6014-6033 | Msa1380030:intron | 40.0% | |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | tig0020319:6167-6186 | Msa1380030:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | tig0020319:6168-6187 | Msa1380030:intron | 40.0% |
| GCTAACAGAGTCTACATTCA+GGG | + | tig0020319:6243-6262 | None:intergenic | 40.0% | |
| ! | TTGTTAGTCACTTTAGTCCC+TGG | + | tig0020319:6271-6290 | None:intergenic | 40.0% |
| GTGACTAACAAGTCTACGTT+CGG | - | tig0020319:6280-6299 | Msa1380030:intron | 40.0% | |
| TGACTAACAAGTCTACGTTC+GGG | - | tig0020319:6281-6300 | Msa1380030:intron | 40.0% | |
| TCGGGGACTAAATTGACTAA+CGG | - | tig0020319:6299-6318 | Msa1380030:intron | 40.0% | |
| ! | TGACGACTCTTTTCCTATTC+AGG | - | tig0020319:6405-6424 | Msa1380030:intron | 40.0% |
| ! | GACGACTCTTTTCCTATTCA+GGG | - | tig0020319:6406-6425 | Msa1380030:intron | 40.0% |
| AGTCAGTTTAGTCCCTGAAT+AGG | + | tig0020319:6421-6440 | None:intergenic | 40.0% | |
| AGTCTCAATGTGCAATTGCA+CGG | + | tig0020319:6651-6670 | None:intergenic | 40.0% | |
| ACTCGTAACACAAGTGATGA+AGG | + | tig0020319:6784-6803 | None:intergenic | 40.0% | |
| TCATCACTTGTGTTACGAGT+TGG | - | tig0020319:6784-6803 | Msa1380030:intron | 40.0% | |
| CACAACTCCTTGTAAAGTAC+TGG | - | tig0020319:6876-6895 | Msa1380030:intron | 40.0% | |
| CGGTATACCAGTACTTTACA+AGG | + | tig0020319:6886-6905 | None:intergenic | 40.0% | |
| GCTAATCGGCACAATATAGT+AGG | + | tig0020319:6999-7018 | None:intergenic | 40.0% | |
| AGAAATACTCACAATCACCC+CGG | - | tig0020319:7022-7041 | Msa1380030:intron | 40.0% | |
| ! | TCTCTGTTTCTTGAAGTCTG+CGG | - | tig0020319:7161-7180 | Msa1380030:intron | 40.0% |
| GGCTCTCTCAATATATTTCG+TGG | - | tig0020319:7441-7460 | Msa1380030:CDS | 40.0% | |
| CGGGATGAAAAAAGAGTCAA+AGG | - | tig0020319:7514-7533 | Msa1380030:CDS | 40.0% | |
| TTGTATCTGTACATTCGTGC+AGG | - | tig0020319:7557-7576 | Msa1380030:CDS | 40.0% | |
| TTGATCTGATTCTCTCGCTT+GGG | - | tig0020319:7598-7617 | Msa1380030:CDS | 40.0% | |
| GAAAACCAATTCCAAAGTCG+TGG | - | tig0020319:7639-7658 | Msa1380030:CDS | 40.0% | |
| TGAGGATGAAGTAAAGCATG+TGG | - | tig0020319:7695-7714 | Msa1380030:CDS | 40.0% | |
| CTCAACCCAAACTTCAGATT+GGG | + | tig0020319:7728-7747 | None:intergenic | 40.0% | |
| ACTCAACCCAAACTTCAGAT+TGG | + | tig0020319:7729-7748 | None:intergenic | 40.0% | |
| !! | TGAAGTTTGGGTTGAGTCAA+GGG | - | tig0020319:7732-7751 | Msa1380030:CDS | 40.0% |
| ! | AGAGTTCATAGTGTTTGCTG+TGG | - | tig0020319:7853-7872 | Msa1380030:CDS | 40.0% |
| !! | GTTTGCTGTGGATATAGGTT+AGG | - | tig0020319:7865-7884 | Msa1380030:CDS | 40.0% |
| TGAAGGAGAAAGAATGTGGG+AGG | + | tig0020319:5089-5108 | None:intergenic | 45.0% | |
| GTGGTGAAGGAGAAAGAATG+TGG | + | tig0020319:5093-5112 | None:intergenic | 45.0% | |
| ! | GTTTGGAGTTGGAAAGAAGG+TGG | + | tig0020319:5127-5146 | None:intergenic | 45.0% |
| !! | TTCGGAGTTTGGTTTGGAGT+TGG | + | tig0020319:5138-5157 | None:intergenic | 45.0% |
| TTGAGGTTCGGAGTTTGGTT+TGG | + | tig0020319:5144-5163 | None:intergenic | 45.0% | |
| GTGTTGTGAAGGATCTGAAG+CGG | + | tig0020319:5182-5201 | None:intergenic | 45.0% | |
| CTCAAAGCCATTGAATCCGA+AGG | - | tig0020319:5222-5241 | Msa1380030:three_prime_UTR | 45.0% | |
| ATGCAGAAACGTGTCTTCAG+CGG | - | tig0020319:5249-5268 | Msa1380030:exon | 45.0% | |
| !!! | TCGATAGTTTTGGCGGGAAA+TGG | - | tig0020319:5339-5358 | Msa1380030:CDS | 45.0% |
| CGGGAAATGGATCGAAGAAT+TGG | - | tig0020319:5352-5371 | Msa1380030:CDS | 45.0% | |
| TGGATCGAAGAATTGGTTGG+CGG | - | tig0020319:5359-5378 | Msa1380030:CDS | 45.0% | |
| AAGAATTGGTTGGCGGGAAA+TGG | - | tig0020319:5366-5385 | Msa1380030:CDS | 45.0% | |
| CGGGAAATGGATCGAAGAAT+TGG | - | tig0020319:5352-5371 | Msa1380030:CDS | 45.0% | |
| !! | TGAAAGGTGGATTGGTAGAG+AGG | - | tig0020319:5523-5542 | Msa1380030:intron | 45.0% |
| GAGCCATGTGAGAGTTATCA+GGG | - | tig0020319:5572-5591 | Msa1380030:intron | 45.0% | |
| !! | GAGTTATCAGGGTTTTGTCG+AGG | - | tig0020319:5583-5602 | Msa1380030:intron | 45.0% |
| TCGAGGCATGCTGAGAAATT+GGG | - | tig0020319:5600-5619 | Msa1380030:intron | 45.0% | |
| TGGTAATCGCTACGCTTTGA+AGG | - | tig0020319:5635-5654 | Msa1380030:intron | 45.0% | |
| GTTTCCTTAACCAGTGTTCG+GGG | - | tig0020319:6015-6034 | Msa1380030:intron | 45.0% | |
| TTTCCTTAACCAGTGTTCGG+GGG | - | tig0020319:6016-6035 | Msa1380030:intron | 45.0% | |
| GAAACTCGCAATGAAAAGGG+AGG | + | tig0020319:6134-6153 | None:intergenic | 45.0% | |
| CTTTAGTCCCTGAATGGGAA+AGG | - | tig0020319:6173-6192 | Msa1380030:intron | 45.0% | |
| GACTACTCCTTTCCCATTCA+GGG | + | tig0020319:6183-6202 | None:intergenic | 45.0% | |
| TGACTACTCCTTTCCCATTC+AGG | + | tig0020319:6184-6203 | None:intergenic | 45.0% | |
| GGCTAACAGAGTCTACATTC+AGG | + | tig0020319:6244-6263 | None:intergenic | 45.0% | |
| AGACTCTGTTAGCCAATTCC+AGG | - | tig0020319:6250-6269 | Msa1380030:intron | 45.0% | |
| GACTCTGTTAGCCAATTCCA+GGG | - | tig0020319:6251-6270 | Msa1380030:intron | 45.0% | |
| ! | GTCACTTTAGTCCCTGGAAT+TGG | + | tig0020319:6265-6284 | None:intergenic | 45.0% |
| GACTAACAAGTCTACGTTCG+GGG | - | tig0020319:6282-6301 | Msa1380030:intron | 45.0% | |
| ACTAACGGAGTCTGCATTCA+GGG | - | tig0020319:6314-6333 | Msa1380030:intron | 45.0% | |
| TCAATGTGCAATTGCACGGA+AGG | + | tig0020319:6647-6666 | None:intergenic | 45.0% | |
| GGTAATCATCCCTCCAAAAC+AGG | - | tig0020319:7287-7306 | Msa1380030:intron | 45.0% | |
| CTTGATCTGATTCTCTCGCT+TGG | - | tig0020319:7597-7616 | Msa1380030:CDS | 45.0% | |
| TATCTTGCTCTCCACGACTT+TGG | + | tig0020319:7653-7672 | None:intergenic | 45.0% | |
| AACCCAAACTTCAGATTGGG+CGG | + | tig0020319:7725-7744 | None:intergenic | 45.0% | |
| !! | CTGAAGTTTGGGTTGAGTCA+AGG | - | tig0020319:7731-7750 | Msa1380030:CDS | 45.0% |
| !! | AATAAATTAATTAAGAAATT+AGG | - | tig0020319:6452-6471 | Msa1380030:intron | 5.0% |
| !! | ATAAATTAATTAAGAAATTA+GGG | - | tig0020319:6453-6472 | Msa1380030:intron | 5.0% |
| AGAAAGAATGTGGGAGGAGG+CGG | + | tig0020319:5083-5102 | None:intergenic | 50.0% | |
| AGGAGAAAGAATGTGGGAGG+AGG | + | tig0020319:5086-5105 | None:intergenic | 50.0% | |
| TGGAGTTGGAAAGAAGGTGG+CGG | + | tig0020319:5124-5143 | None:intergenic | 50.0% | |
| AGGAGTTGAGGTTCGGAGTT+TGG | + | tig0020319:5149-5168 | None:intergenic | 50.0% | |
| ACTCCGAACCTCAACTCCTT+CGG | - | tig0020319:5150-5169 | Msa1380030:three_prime_UTR | 50.0% | |
| AGTCCGAAGGAGTTGAGGTT+CGG | + | tig0020319:5156-5175 | None:intergenic | 50.0% | |
| !! | TGGCTTTGAGAAGAAACGGG+TGG | + | tig0020319:5212-5231 | None:intergenic | 50.0% |
| TGACTCTCTTCTTTCGGCGA+TGG | - | tig0020319:5284-5303 | Msa1380030:CDS | 50.0% | |
| GGATCGAAGAATTGGTTGGC+GGG | - | tig0020319:5360-5379 | Msa1380030:CDS | 50.0% | |
| !! | TGTGTGGGGAGTTTTGACAC+TGG | - | tig0020319:5434-5453 | Msa1380030:intron | 50.0% |
| !! | GGAGTTTTGACACTGGTGAG+TGG | - | tig0020319:5441-5460 | Msa1380030:intron | 50.0% |
| ! | TTGTGGTTGGTGCGTGGATA+CGG | - | tig0020319:5466-5485 | Msa1380030:intron | 50.0% |
| GGAGCCATGTGAGAGTTATC+AGG | - | tig0020319:5571-5590 | Msa1380030:intron | 50.0% | |
| GTCGAGGCATGCTGAGAAAT+TGG | - | tig0020319:5599-5618 | Msa1380030:intron | 50.0% | |
| CGAGGCATGCTGAGAAATTG+GGG | - | tig0020319:5601-5620 | Msa1380030:intron | 50.0% | |
| AGATACCTTAACCAGTGCCC+CGG | + | tig0020319:5907-5926 | None:intergenic | 50.0% | |
| GACTAACGGAGTCTGCATTC+AGG | - | tig0020319:6313-6332 | Msa1380030:intron | 50.0% | |
| TCAAGCACAGAAGAACTCCG+AGG | - | tig0020319:7185-7204 | Msa1380030:intron | 50.0% | |
| TGCTAGAGCTCTTGTAGCCT+CGG | + | tig0020319:7205-7224 | None:intergenic | 50.0% | |
| ATTCTCTCGCTTGGGAAGTC+TGG | - | tig0020319:7606-7625 | Msa1380030:CDS | 50.0% | |
| TTGGGAAGTCTGGTAAGCTG+TGG | - | tig0020319:7616-7635 | Msa1380030:CDS | 50.0% | |
| TGGGAAGTCTGGTAAGCTGT+GGG | - | tig0020319:7617-7636 | Msa1380030:CDS | 50.0% | |
| !! | GCTCTCCACGACTTTGGAAT+TGG | + | tig0020319:7647-7666 | None:intergenic | 50.0% |
| ! | AGACCGCCCAATCTGAAGTT+TGG | - | tig0020319:7719-7738 | Msa1380030:CDS | 50.0% |
| ! | GACCGCCCAATCTGAAGTTT+GGG | - | tig0020319:7720-7739 | Msa1380030:CDS | 50.0% |
| !! | AGTTTGGGTTGAGTCAAGGG+AGG | - | tig0020319:7735-7754 | Msa1380030:CDS | 50.0% |
| GGAGTTGGAAAGAAGGTGGC+GGG | + | tig0020319:5123-5142 | None:intergenic | 55.0% | |
| GGTGAAGTCCGAAGGAGTTG+AGG | + | tig0020319:5161-5180 | None:intergenic | 55.0% | |
| ! | TCTGAAGCGGTGAAGTCCGA+AGG | + | tig0020319:5169-5188 | None:intergenic | 55.0% |
| ! | GACACTGGTGAGTGGTGTTG+TGG | - | tig0020319:5449-5468 | Msa1380030:intron | 55.0% |
| !! | CTGGTGAGTGGTGTTGTGGT+TGG | - | tig0020319:5453-5472 | Msa1380030:intron | 55.0% |
| ATACCTTAACCAGTGCCCCG+GGG | + | tig0020319:5905-5924 | None:intergenic | 55.0% | |
| GATACCTTAACCAGTGCCCC+GGG | + | tig0020319:5906-5925 | None:intergenic | 55.0% | |
| !! | AAAGAAGGTGGCGGGAGCAG+TGG | + | tig0020319:5115-5134 | None:intergenic | 60.0% |
| !! | GTGGTGTTGTGGTTGGTGCG+TGG | - | tig0020319:5460-5479 | Msa1380030:intron | 60.0% |
| TTGGTGCGTGGATACGGACG+CGG | - | tig0020319:5472-5491 | Msa1380030:intron | 60.0% | |
| GGTTGTGTTAACCGGTGCCC+CGG | - | tig0020319:5885-5904 | Msa1380030:intron | 60.0% | |
| GTTGTGTTAACCGGTGCCCC+GGG | - | tig0020319:5886-5905 | Msa1380030:intron | 60.0% | |
| TTGTGTTAACCGGTGCCCCG+GGG | - | tig0020319:5887-5906 | Msa1380030:intron | 60.0% | |
| CTTAACCAGTGTTCGGGGGC+CGG | - | tig0020319:6020-6039 | Msa1380030:intron | 60.0% | |
| CGTGGATACGGACGCGGCAA+TGG | - | tig0020319:5478-5497 | Msa1380030:intron | 65.0% | |
| GGATACGGACGCGGCAATGG+AGG | - | tig0020319:5481-5500 | Msa1380030:intron | 65.0% | |
| ! | CGGCCCCCGAACACTGGTTA+AGG | + | tig0020319:6022-6041 | None:intergenic | 65.0% |
| GTTAACCGGCCCCCGAACAC+TGG | + | tig0020319:6028-6047 | None:intergenic | 65.0% | |
| ! | GGCGGGAGCAGTGGTGGTGA+AGG | + | tig0020319:5106-5125 | None:intergenic | 70.0% |
| !! | GAAGGTGGCGGGAGCAGTGG+TGG | + | tig0020319:5112-5131 | None:intergenic | 70.0% |
| TAACCAGTGCCCCGGGGCAC+CGG | + | tig0020319:5899-5918 | None:intergenic | 70.0% | |
| !! | GTGCCCCGGGGCACTGGTTA+AGG | - | tig0020319:5899-5918 | Msa1380030:intron | 70.0% |
| TAACCGGTGCCCCGGGGCAC+TGG | - | tig0020319:5893-5912 | Msa1380030:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020319 | gene | 5063 | 7928 | 5063 | ID=Msa1380030;Name=Msa1380030 |
| tig0020319 | mRNA | 5063 | 7928 | 5063 | ID=Msa1380030-mRNA-1;Parent=Msa1380030;Name=Msa1380030-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.66|1|1|1|3|194|291 |
| tig0020319 | exon | 5063 | 5412 | 5063 | ID=Msa1380030-mRNA-1:exon:6895;Parent=Msa1380030-mRNA-1 |
| tig0020319 | exon | 5704 | 5814 | 5704 | ID=Msa1380030-mRNA-1:exon:6894;Parent=Msa1380030-mRNA-1 |
| tig0020319 | exon | 7320 | 7928 | 7320 | ID=Msa1380030-mRNA-1:exon:6893;Parent=Msa1380030-mRNA-1 |
| tig0020319 | CDS | 7320 | 7928 | 7320 | ID=Msa1380030-mRNA-1:cds;Parent=Msa1380030-mRNA-1 |
| tig0020319 | CDS | 5704 | 5814 | 5704 | ID=Msa1380030-mRNA-1:cds;Parent=Msa1380030-mRNA-1 |
| tig0020319 | CDS | 5257 | 5412 | 5257 | ID=Msa1380030-mRNA-1:cds;Parent=Msa1380030-mRNA-1 |
| tig0020319 | three_prime_UTR | 5063 | 5256 | 5063 | ID=Msa1380030-mRNA-1:three_prime_utr;Parent=Msa1380030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
