Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516360 | XP_039687607.1 | 98.263 | 403 | 7 | 0 | 1 | 403 | 1 | 403 | 0.0 | 821 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516360 | sp|D2K8N5|TAP46_NICBE | 71.782 | 404 | 112 | 2 | 1 | 403 | 1 | 403 | 0.0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516360 | G7J7F3 | 98.020 | 404 | 7 | 1 | 1 | 403 | 1 | 404 | 0.0 | 816 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0516360 | Msa1084270 | 0.848446 | 6.098850e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516360 | MtrunA17_Chr3g0126951 | 98.020 | 404 | 7 | 1 | 1 | 403 | 1 | 404 | 0.0 | 816 |
| Msa0516360 | MtrunA17_Chr1g0171331 | 93.675 | 332 | 15 | 1 | 72 | 403 | 19 | 344 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516360 | AT5G53000.1 | 70.370 | 405 | 118 | 1 | 1 | 403 | 1 | 405 | 0.0 | 580 |
Find 130 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACACCAACCACTGATATT+TGG | 0.154577 | 3_4:+67888205 | Msa0516360:CDS |
| TAAGATTCTAACTCCTCTTT+TGG | 0.196712 | 3_4:-67886791 | None:intergenic |
| AAGAAAACATGACACCTTTC+TGG | 0.241137 | 3_4:-67886852 | None:intergenic |
| TTCCGGTGAAAGATAATAAT+TGG | 0.248157 | 3_4:-67885335 | None:intergenic |
| TGTTCAGGCATTTGATCTTC+TGG | 0.248796 | 3_4:+67887593 | Msa0516360:intron |
| AGGGGTAAGCTTCGAATTTC+CGG | 0.250990 | 3_4:-67888743 | None:intergenic |
| GATTCTGTTGGTAGTGTTTC+CGG | 0.262024 | 3_4:-67885352 | None:intergenic |
| AATGCGAAAACATGATTAAT+AGG | 0.270151 | 3_4:+67885614 | Msa0516360:CDS |
| CCACTCCTGGTTGAGCTATA+TGG | 0.287124 | 3_4:-67889021 | None:intergenic |
| CTCTGATCAGCAACAGCTTT+TGG | 0.287618 | 3_4:-67886827 | None:intergenic |
| GAGCTAGAGCTTTGGATGAT+TGG | 0.301964 | 3_4:+67888698 | Msa0516360:CDS |
| TCTTCCTCTCCTGCCTCAAC+AGG | 0.311176 | 3_4:-67887135 | None:intergenic |
| GGTTGTGCTGATATCCTCTT+TGG | 0.321034 | 3_4:-67885662 | None:intergenic |
| TTGGAATACTAGCATATCTT+TGG | 0.334027 | 3_4:+67887485 | Msa0516360:CDS |
| AACACCAACCACTGATATTT+GGG | 0.339739 | 3_4:+67888206 | Msa0516360:CDS |
| ATTGGCTTCTTCAATGAATC+TGG | 0.346117 | 3_4:-67888599 | None:intergenic |
| ATCATTGTGCCAAGATGAAT+TGG | 0.351143 | 3_4:-67888617 | None:intergenic |
| CTGCCTCAACAGGGGTGGAC+AGG | 0.380810 | 3_4:-67887125 | None:intergenic |
| GATGGAGGACATGCCGTTAC+CGG | 0.383115 | 3_4:+67885417 | Msa0516360:CDS |
| TACCTTCGCTCAAGATGTTC+TGG | 0.387841 | 3_4:+67888147 | Msa0516360:CDS |
| CATATCTTTGGCAATCTGTA+AGG | 0.394600 | 3_4:+67887497 | Msa0516360:CDS |
| ATTCATCTTGGCACAATGAT+AGG | 0.398345 | 3_4:+67888620 | Msa0516360:CDS |
| GGCAGGAGAGGAAGAACTAT+TGG | 0.402541 | 3_4:+67887143 | Msa0516360:CDS |
| CTTCCATTCACAAGACTTTG+TGG | 0.409118 | 3_4:-67888229 | None:intergenic |
| GAGAGCAAGAATGGCAGCTC+AGG | 0.410453 | 3_4:+67888264 | Msa0516360:CDS |
| CCATGTTTAGGATGGGGATC+AGG | 0.419549 | 3_4:+67888015 | Msa0516360:intron |
| ATGTAGTCAGATGAATTTCC+AGG | 0.421026 | 3_4:-67888893 | None:intergenic |
| GATAAATATGTACCTATGAC+TGG | 0.430417 | 3_4:-67888296 | None:intergenic |
| ATATGGCAAATTAAACAAAC+TGG | 0.437156 | 3_4:-67889004 | None:intergenic |
| CTGTCCACCCCTGTTGAGGC+AGG | 0.437775 | 3_4:+67887126 | Msa0516360:CDS |
| AGGTCTTCCAACCCAGTCAT+AGG | 0.441903 | 3_4:+67888284 | Msa0516360:CDS |
| TACAAATGAGAGAGCAAGAA+TGG | 0.443576 | 3_4:+67888255 | Msa0516360:CDS |
| TTGAAGAAGCCAATTCATCT+TGG | 0.455058 | 3_4:+67888608 | Msa0516360:CDS |
| CACGCCACCGCCACTGAGTC+CGG | 0.455804 | 3_4:+67885466 | Msa0516360:CDS |
| GCCTGGGAAGCCTTTAGAAT+CGG | 0.455958 | 3_4:-67886583 | None:intergenic |
| TCATCCTCCTCCTCTTCACC+TGG | 0.457933 | 3_4:-67888652 | None:intergenic |
| TGCCCTGTCCACCCCTGTTG+AGG | 0.460057 | 3_4:+67887122 | Msa0516360:CDS |
| GGAAGCAGGACTAAAAGAAA+TGG | 0.466493 | 3_4:+67888546 | Msa0516360:CDS |
| GATGATAATCCGCGGGGTGC+CGG | 0.475557 | 3_4:+67888724 | Msa0516360:CDS |
| TTTAAAGGAAATCCCACTCC+TGG | 0.477352 | 3_4:-67889034 | None:intergenic |
| TGCTCATTATTCTTCAACCT+GGG | 0.489433 | 3_4:-67888789 | None:intergenic |
| CTCTCCTGCCTCAACAGGGG+TGG | 0.490362 | 3_4:-67887130 | None:intergenic |
| CAAAAGCTGTTGCTGATCAG+AGG | 0.494147 | 3_4:+67886828 | Msa0516360:CDS |
| GTCAACTCAGCAAGATAATA+CGG | 0.494833 | 3_4:-67886532 | None:intergenic |
| TCTGGAAATGATTAAGAAAG+AGG | 0.495866 | 3_4:+67887611 | Msa0516360:CDS |
| TGACGGAGAAGAAGAAAGAG+AGG | 0.495976 | 3_4:+67887170 | Msa0516360:CDS |
| TTCCAATTATTATCTTTCAC+CGG | 0.497028 | 3_4:+67885333 | Msa0516360:five_prime_UTR |
| TGCCTCAACAGGGGTGGACA+GGG | 0.499117 | 3_4:-67887124 | None:intergenic |
| TAATTGAATCTATTCTTCCC+AGG | 0.501131 | 3_4:+67888772 | Msa0516360:exon |
| TCCGATGGGTGAGATGAAGA+TGG | 0.501968 | 3_4:+67885399 | Msa0516360:exon |
| ACCGATTCTAAAGGCTTCCC+AGG | 0.508228 | 3_4:+67886582 | Msa0516360:CDS |
| TGAAGATGACGATGCTGCAC+AGG | 0.511553 | 3_4:+67888672 | Msa0516360:CDS |
| TGTTCAGGAGCTTGTCAAGA+AGG | 0.513400 | 3_4:+67885573 | Msa0516360:intron |
| GGGCCACAAAGTCTTGTGAA+TGG | 0.518210 | 3_4:+67888226 | Msa0516360:CDS |
| GAAAACATGATTAATAGGCT+TGG | 0.519278 | 3_4:+67885619 | Msa0516360:CDS |
| GGAGATGCTTTCTGCTGTAA+AGG | 0.520685 | 3_4:+67887635 | Msa0516360:CDS |
| TTGCTCATTATTCTTCAACC+TGG | 0.521555 | 3_4:-67888790 | None:intergenic |
| AAATGGAAATTATGAATACA+TGG | 0.530525 | 3_4:+67888563 | Msa0516360:CDS |
| TGCTGATCAGAGGGCCAGAA+AGG | 0.530837 | 3_4:+67886838 | Msa0516360:CDS |
| CTTCCTCTCCTGCCTCAACA+GGG | 0.530933 | 3_4:-67887134 | None:intergenic |
| AATTCGAAGCTTACCCCTTG+CGG | 0.531093 | 3_4:+67888748 | Msa0516360:CDS |
| AGAAAATAGCACATGATGAC+AGG | 0.531695 | 3_4:+67886557 | Msa0516360:CDS |
| TGCTTCCTCAATGCTCATAG+TGG | 0.531761 | 3_4:-67888530 | None:intergenic |
| ACAGGATAGAGCTAGAGCTT+TGG | 0.535946 | 3_4:+67888690 | Msa0516360:CDS |
| TAGAGCTTTGGATGATTGGA+AGG | 0.539728 | 3_4:+67888702 | Msa0516360:CDS |
| GTTCAGGAGCTTGTCAAGAA+GGG | 0.541089 | 3_4:+67885574 | Msa0516360:intron |
| GAAGTTTAAGCCAGGTGAAG+AGG | 0.541846 | 3_4:+67888642 | Msa0516360:CDS |
| CGTCTGAGATTTGATTCTGT+TGG | 0.545001 | 3_4:-67885364 | None:intergenic |
| GAAACGAAAGCGTACTTGGT+CGG | 0.545373 | 3_4:-67885491 | None:intergenic |
| TAAGCCAGGTGAAGAGGAGG+AGG | 0.545443 | 3_4:+67888648 | Msa0516360:CDS |
| GGCACCGGACTCAGTGGCGG+TGG | 0.546659 | 3_4:-67885470 | None:intergenic |
| CGGACTCAGTGGCGGTGGCG+TGG | 0.550530 | 3_4:-67885465 | None:intergenic |
| ATATGTACCTATGACTGGGT+TGG | 0.554490 | 3_4:-67888291 | None:intergenic |
| GCGAAGGTAGCACATGTGAT+TGG | 0.558292 | 3_4:-67888133 | None:intergenic |
| CACCCCTGTTGAGGCAGGAG+AGG | 0.559655 | 3_4:+67887131 | Msa0516360:CDS |
| ATAGATTCAATTAGCCGCAA+GGG | 0.564088 | 3_4:-67888762 | None:intergenic |
| CTTGCTTGTTCAAACAGCGC+CGG | 0.565472 | 3_4:-67885436 | None:intergenic |
| GCTTCCTCAATGCTCATAGT+GGG | 0.565665 | 3_4:-67888529 | None:intergenic |
| AAAGCGTACTTGGTCGGCAC+CGG | 0.566041 | 3_4:-67885485 | None:intergenic |
| GATGGAGCTGGTCCCAAAAG+AGG | 0.566346 | 3_4:+67886778 | Msa0516360:CDS |
| TCCATCTTCATCTCACCCAT+CGG | 0.567407 | 3_4:-67885400 | None:intergenic |
| TTGGAAGGATGATAATCCGC+GGG | 0.569064 | 3_4:+67888717 | Msa0516360:CDS |
| CCATATAGCTCAACCAGGAG+TGG | 0.569742 | 3_4:+67889021 | Msa0516360:three_prime_UTR |
| TGTTCAAACAGCGCCGGTAA+CGG | 0.569938 | 3_4:-67885430 | None:intergenic |
| CTCTGCTAATGAAACCAAAG+AGG | 0.570061 | 3_4:+67885648 | Msa0516360:CDS |
| GTAAAACATAGAATAAAAGA+AGG | 0.570626 | 3_4:-67888959 | None:intergenic |
| TTCCAGAACATCTTGAGCGA+AGG | 0.571431 | 3_4:-67888149 | None:intergenic |
| GCACATGTGATTGGTGGAGA+TGG | 0.572371 | 3_4:-67888124 | None:intergenic |
| CATATAGCTCAACCAGGAGT+GGG | 0.572704 | 3_4:+67889022 | Msa0516360:three_prime_UTR |
| TGACAGGATACCGATTCTAA+AGG | 0.573766 | 3_4:+67886573 | Msa0516360:CDS |
| AGTTAGAATCTTATATGCAA+GGG | 0.574858 | 3_4:+67886801 | Msa0516360:CDS |
| AAGGTAGCACATGTGATTGG+TGG | 0.577338 | 3_4:-67888130 | None:intergenic |
| CAAAATCTTTAACACAGACT+AGG | 0.577669 | 3_4:-67888866 | None:intergenic |
| GAGTTAGAATCTTATATGCA+AGG | 0.580289 | 3_4:+67886800 | Msa0516360:CDS |
| GTTAGAAATAAACGAGCGAA+AGG | 0.582445 | 3_4:+67887071 | Msa0516360:CDS |
| CGGCGCTGTTTGAACAAGCA+AGG | 0.583327 | 3_4:+67885437 | Msa0516360:CDS |
| GTTTAAGCCAGGTGAAGAGG+AGG | 0.583570 | 3_4:+67888645 | Msa0516360:CDS |
| GGCTTCCCAGGCAAAACTGA+AGG | 0.587652 | 3_4:+67886594 | Msa0516360:CDS |
| TGTAAAGGATAGACAATCCA+AGG | 0.589440 | 3_4:+67887650 | Msa0516360:CDS |
| TTTGTGTTCGTGTGCTTGCG+AGG | 0.589889 | 3_4:-67888185 | None:intergenic |
| AAAAGCTGTTGCTGATCAGA+GGG | 0.591137 | 3_4:+67886829 | Msa0516360:CDS |
| GGAAATGATTAAGAAAGAGG+AGG | 0.591992 | 3_4:+67887614 | Msa0516360:CDS |
| AACCGATCTCAAGTACATCC+TGG | 0.592669 | 3_4:+67885681 | Msa0516360:CDS |
| GTGGCCCAAATATCAGTGGT+TGG | 0.592707 | 3_4:-67888210 | None:intergenic |
| ACTATGAGCATTGAGGAAGC+AGG | 0.594997 | 3_4:+67888532 | Msa0516360:CDS |
| TTCCTCTCCTGCCTCAACAG+GGG | 0.599086 | 3_4:-67887133 | None:intergenic |
| TACCAGGATGTACTTGAGAT+CGG | 0.603064 | 3_4:-67885683 | None:intergenic |
| AATGATAGGAAGTTTAAGCC+AGG | 0.610210 | 3_4:+67888634 | Msa0516360:CDS |
| AAATAAACGAGCGAAAGGAA+CGG | 0.614011 | 3_4:+67887076 | Msa0516360:CDS |
| AATAGATTCAATTAGCCGCA+AGG | 0.614970 | 3_4:-67888763 | None:intergenic |
| GAATAAAAGAAGGTGAGATG+AGG | 0.616605 | 3_4:-67888949 | None:intergenic |
| GAAGAACTATTGGAAGATGA+CGG | 0.618639 | 3_4:+67887153 | Msa0516360:CDS |
| ATTTGCCATATAGCTCAACC+AGG | 0.621910 | 3_4:+67889016 | Msa0516360:three_prime_UTR |
| ATAAATATGTACCTATGACT+GGG | 0.627631 | 3_4:-67888295 | None:intergenic |
| TTCGCTCAAGATGTTCTGGA+AGG | 0.633258 | 3_4:+67888151 | Msa0516360:CDS |
| GTCGGCACCGGACTCAGTGG+CGG | 0.633971 | 3_4:-67885473 | None:intergenic |
| AGGTTGAAGAATAATGAGCA+AGG | 0.634107 | 3_4:+67888792 | Msa0516360:three_prime_UTR |
| ACGAGCGAAAGGAACGGCGT+GGG | 0.637909 | 3_4:+67887082 | Msa0516360:CDS |
| GTTAGAATCTTATATGCAAG+GGG | 0.638453 | 3_4:+67886802 | Msa0516360:CDS |
| CTTTGTGGCCCAAATATCAG+TGG | 0.638531 | 3_4:-67888214 | None:intergenic |
| GGTTGAAGAATAATGAGCAA+GGG | 0.648208 | 3_4:+67888793 | Msa0516360:three_prime_UTR |
| GATGCCCACTATGAGCATTG+AGG | 0.648707 | 3_4:+67888525 | Msa0516360:CDS |
| TTGGTCGGCACCGGACTCAG+TGG | 0.649187 | 3_4:-67885476 | None:intergenic |
| TTCGAATTTCCGGCACCCCG+CGG | 0.649460 | 3_4:-67888733 | None:intergenic |
| TAGATTCAATTAGCCGCAAG+GGG | 0.654034 | 3_4:-67888761 | None:intergenic |
| AACGAGCGAAAGGAACGGCG+TGG | 0.663839 | 3_4:+67887081 | Msa0516360:CDS |
| ATTGGAAGGATGATAATCCG+CGG | 0.675321 | 3_4:+67888716 | Msa0516360:CDS |
| GCTTGTCAAGAAGGGATGCG+AGG | 0.685734 | 3_4:+67885582 | Msa0516360:CDS |
| GATGGGTGAGATGAAGATGG+AGG | 0.688122 | 3_4:+67885402 | Msa0516360:exon |
| TGGAAGGATGATAATCCGCG+GGG | 0.769686 | 3_4:+67888718 | Msa0516360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTAAATCTAGTTATTATA+AGG | + | chr3_4:67885858-67885877 | Msa0516360:intron | 15.0% |
| !! | ATAACAAAAAATTGGTAAAT+GGG | - | chr3_4:67886498-67886517 | None:intergenic | 15.0% |
| !! | TAATATTGAAGAAATTAACA+AGG | - | chr3_4:67886685-67886704 | None:intergenic | 15.0% |
| !!! | TACTGAAAAACATTTTTTTT+AGG | + | chr3_4:67886733-67886752 | Msa0516360:intron | 15.0% |
| !! | AAATATAAGTTTAAACAAAG+TGG | - | chr3_4:67887547-67887566 | None:intergenic | 15.0% |
| !! | AATCCTAATGTGTATTAATA+TGG | + | chr3_4:67886362-67886381 | Msa0516360:intron | 20.0% |
| !! | ATCCTAATGTGTATTAATAT+GGG | + | chr3_4:67886363-67886382 | Msa0516360:intron | 20.0% |
| !! | GATAACAAAAAATTGGTAAA+TGG | - | chr3_4:67886499-67886518 | None:intergenic | 20.0% |
| !! | TTTCATAACAAGTGAATAAT+GGG | - | chr3_4:67886944-67886963 | None:intergenic | 20.0% |
| !!! | TTTTCATAACAAGTGAATAA+TGG | - | chr3_4:67886945-67886964 | None:intergenic | 20.0% |
| !! | TTATATTTCGATTATTCTCA+TGG | + | chr3_4:67887559-67887578 | Msa0516360:intron | 20.0% |
| !!! | GTTTTATATTGCCATAATTA+TGG | + | chr3_4:67887744-67887763 | Msa0516360:intron | 20.0% |
| !! | AATGTGCATTTATTGATAAA+GGG | - | chr3_4:67888322-67888341 | None:intergenic | 20.0% |
| !! | AAATGTGCATTTATTGATAA+AGG | - | chr3_4:67888323-67888342 | None:intergenic | 20.0% |
| !! | AAATGGAAATTATGAATACA+TGG | + | chr3_4:67888563-67888582 | Msa0516360:CDS | 20.0% |
| !! | GTAAAACATAGAATAAAAGA+AGG | - | chr3_4:67888962-67888981 | None:intergenic | 20.0% |
| ! | TTCCAATTATTATCTTTCAC+CGG | + | chr3_4:67885333-67885352 | Msa0516360:five_prime_UTR | 25.0% |
| ! | CAGAAACATGAAAACAAATA+AGG | - | chr3_4:67885524-67885543 | None:intergenic | 25.0% |
| ! | AATGCGAAAACATGATTAAT+AGG | + | chr3_4:67885614-67885633 | Msa0516360:CDS | 25.0% |
| ! | TTCTACTAGATTTCTATGTT+TGG | - | chr3_4:67886134-67886153 | None:intergenic | 25.0% |
| ! | AATAAAACACGATTACACAA+TGG | + | chr3_4:67886173-67886192 | Msa0516360:intron | 25.0% |
| ! | ATAAAACACGATTACACAAT+GGG | + | chr3_4:67886174-67886193 | Msa0516360:intron | 25.0% |
| ! | TTCCCATATTAATACACATT+AGG | - | chr3_4:67886368-67886387 | None:intergenic | 25.0% |
| ! | CTTCAATATTCTGTACTTAA+AGG | - | chr3_4:67886446-67886465 | None:intergenic | 25.0% |
| ! | AGGGAATGATAACAAAAAAT+TGG | - | chr3_4:67886506-67886525 | None:intergenic | 25.0% |
| ! | TTTCAGTAAGCTTCAATAAA+AGG | - | chr3_4:67886721-67886740 | None:intergenic | 25.0% |
| ! | AGTTAGAATCTTATATGCAA+GGG | + | chr3_4:67886801-67886820 | Msa0516360:CDS | 25.0% |
| ! | ACTAAATAAAGTAGCAGTAA+TGG | - | chr3_4:67887219-67887238 | None:intergenic | 25.0% |
| !!! | ATTACTGCTACTTTATTTAG+TGG | + | chr3_4:67887218-67887237 | Msa0516360:intron | 25.0% |
| !!! | TTACTGCTACTTTATTTAGT+GGG | + | chr3_4:67887219-67887238 | Msa0516360:intron | 25.0% |
| !!! | TTATTTTTCTTCTCCTTTTC+AGG | + | chr3_4:67887461-67887480 | Msa0516360:intron | 25.0% |
| ! | ATTATGGCAATATAAAACAG+TGG | - | chr3_4:67887742-67887761 | None:intergenic | 25.0% |
| ! | TTATATTGCCATAATTATGG+TGG | + | chr3_4:67887747-67887766 | Msa0516360:intron | 25.0% |
| ! | AATAAAAGTTAAGTTCTACC+AGG | - | chr3_4:67887828-67887847 | None:intergenic | 25.0% |
| !! | CACATTTCACTTGATAATTA+TGG | + | chr3_4:67887862-67887881 | Msa0516360:intron | 25.0% |
| !! | ACTTGATAATTATGGAATAC+CGG | + | chr3_4:67887870-67887889 | Msa0516360:intron | 25.0% |
| ! | ATAAATATGTACCTATGACT+GGG | - | chr3_4:67888298-67888317 | None:intergenic | 25.0% |
| ! | ATGTGCATTTATTGATAAAG+GGG | - | chr3_4:67888321-67888340 | None:intergenic | 25.0% |
| !! | ATTGAACTTCATTTTCTTTC+AGG | - | chr3_4:67888407-67888426 | None:intergenic | 25.0% |
| !!! | TGAGTTGAATATTTTGTTGA+AGG | + | chr3_4:67888503-67888522 | Msa0516360:intron | 25.0% |
| !! | TGTTAAAGATTTTGTATACC+TGG | + | chr3_4:67888875-67888894 | Msa0516360:three_prime_UTR | 25.0% |
| ! | ATATGGCAAATTAAACAAAC+TGG | - | chr3_4:67889007-67889026 | None:intergenic | 25.0% |
| TTCCGGTGAAAGATAATAAT+TGG | - | chr3_4:67885338-67885357 | None:intergenic | 30.0% | |
| ! | ACGTTAATTTTCTTTTCCGA+TGG | + | chr3_4:67885384-67885403 | Msa0516360:exon | 30.0% |
| ! | CGTTAATTTTCTTTTCCGAT+GGG | + | chr3_4:67885385-67885404 | Msa0516360:exon | 30.0% |
| GAAAACATGATTAATAGGCT+TGG | + | chr3_4:67885619-67885638 | Msa0516360:CDS | 30.0% | |
| GGAATGAGTATAAAAATCCA+AGG | + | chr3_4:67885908-67885927 | Msa0516360:intron | 30.0% | |
| CTGTGCAATTTATTGTAATG+CGG | + | chr3_4:67886026-67886045 | Msa0516360:intron | 30.0% | |
| TTGTGTTCTTAAGAGATGTT+TGG | + | chr3_4:67886062-67886081 | Msa0516360:intron | 30.0% | |
| TTCATGATTGTGATAGAAAC+TGG | + | chr3_4:67886106-67886125 | Msa0516360:intron | 30.0% | |
| ! | TAAATTTTTCCAGTCTCACT+CGG | - | chr3_4:67886245-67886264 | None:intergenic | 30.0% |
| ACTAGTTGTTGCACATATTT+AGG | - | chr3_4:67886282-67886301 | None:intergenic | 30.0% | |
| ! | TGTGCATATAGTGTTGAATT+GGG | - | chr3_4:67886660-67886679 | None:intergenic | 30.0% |
| ! | TTGTGCATATAGTGTTGAAT+TGG | - | chr3_4:67886661-67886680 | None:intergenic | 30.0% |
| ! | GGAATTTATCTCATTTTGTG+AGG | + | chr3_4:67886754-67886773 | Msa0516360:intron | 30.0% |
| ! | AAGATTCTAACTCCTCTTTT+GGG | - | chr3_4:67886793-67886812 | None:intergenic | 30.0% |
| ! | TAAGATTCTAACTCCTCTTT+TGG | - | chr3_4:67886794-67886813 | None:intergenic | 30.0% |
| GAGTTAGAATCTTATATGCA+AGG | + | chr3_4:67886800-67886819 | Msa0516360:CDS | 30.0% | |
| GTTAGAATCTTATATGCAAG+GGG | + | chr3_4:67886802-67886821 | Msa0516360:CDS | 30.0% | |
| AAGCTAGTCCAATAATATGT+AGG | - | chr3_4:67887347-67887366 | None:intergenic | 30.0% | |
| ! | CTAGCTTGTGATTTATGAAA+TGG | + | chr3_4:67887360-67887379 | Msa0516360:intron | 30.0% |
| GGAGAAGAAAAATAAGTGAA+TGG | - | chr3_4:67887456-67887475 | None:intergenic | 30.0% | |
| TTGGAATACTAGCATATCTT+TGG | + | chr3_4:67887485-67887504 | Msa0516360:CDS | 30.0% | |
| TCTGGAAATGATTAAGAAAG+AGG | + | chr3_4:67887611-67887630 | Msa0516360:CDS | 30.0% | |
| ! | TACTAAGCATTTTACTACCT+TGG | - | chr3_4:67887670-67887689 | None:intergenic | 30.0% |
| AAAGATCTCAACCACAATAA+TGG | - | chr3_4:67887711-67887730 | None:intergenic | 30.0% | |
| AAAGATCTCCACCATAATTA+TGG | - | chr3_4:67887758-67887777 | None:intergenic | 30.0% | |
| ! | AATTATGGTGGAGATCTTTA+TGG | + | chr3_4:67887759-67887778 | Msa0516360:intron | 30.0% |
| ! | ATTATGGTGGAGATCTTTAT+GGG | + | chr3_4:67887760-67887779 | Msa0516360:intron | 30.0% |
| CTTAAAGAACTGTTATAACC+TGG | + | chr3_4:67887807-67887826 | Msa0516360:intron | 30.0% | |
| ! | CTTGATAATTATGGAATACC+GGG | + | chr3_4:67887871-67887890 | Msa0516360:intron | 30.0% |
| !! | TTCTTCTTTAAAGCAGAACA+TGG | - | chr3_4:67887932-67887951 | None:intergenic | 30.0% |
| !! | TGTTCTGCTTTAAAGAAGAA+TGG | + | chr3_4:67887932-67887951 | Msa0516360:intron | 30.0% |
| !! | GTTCTGCTTTAAAGAAGAAT+GGG | + | chr3_4:67887933-67887952 | Msa0516360:intron | 30.0% |
| !!! | GGGAAATTGTTTTTTTTCTG+CGG | + | chr3_4:67887953-67887972 | Msa0516360:intron | 30.0% |
| !!! | GGAAATTGTTTTTTTTCTGC+GGG | + | chr3_4:67887954-67887973 | Msa0516360:intron | 30.0% |
| ! | CTTGTAATTTTGCCATGTTT+AGG | + | chr3_4:67888003-67888022 | Msa0516360:intron | 30.0% |
| ! | TAATTTTGCCATGTTTAGGA+TGG | + | chr3_4:67888007-67888026 | Msa0516360:intron | 30.0% |
| !! | AATTTTGCCATGTTTAGGAT+GGG | + | chr3_4:67888008-67888027 | Msa0516360:intron | 30.0% |
| !! | GGAGTTTTCTAAGGATATTA+TGG | + | chr3_4:67888036-67888055 | Msa0516360:CDS | 30.0% |
| GATAAATATGTACCTATGAC+TGG | - | chr3_4:67888299-67888318 | None:intergenic | 30.0% | |
| AATGCACATTTCTTAGCTAA+TGG | + | chr3_4:67888332-67888351 | Msa0516360:intron | 30.0% | |
| !! | TAATGGAAAGCTTTGGAATA+GGG | + | chr3_4:67888349-67888368 | Msa0516360:intron | 30.0% |
| TTAGAACAACAAAACTGCAA+GGG | - | chr3_4:67888431-67888450 | None:intergenic | 30.0% | |
| TAATTGAATCTATTCTTCCC+AGG | + | chr3_4:67888772-67888791 | Msa0516360:exon | 30.0% | |
| CAAAATCTTTAACACAGACT+AGG | - | chr3_4:67888869-67888888 | None:intergenic | 30.0% | |
| ! | CTATGTTTTACATCTTCACA+TGG | + | chr3_4:67888971-67888990 | Msa0516360:three_prime_UTR | 30.0% |
| !! | GAGTTGTGTGTAATTTGTTC+AGG | + | chr3_4:67885558-67885577 | Msa0516360:intron | 35.0% |
| AATCAATCAATCGAAAAGCG+TGG | - | chr3_4:67885732-67885751 | None:intergenic | 35.0% | |
| ! | AATTTTACATGCACCGAAGA+TGG | - | chr3_4:67885942-67885961 | None:intergenic | 35.0% |
| CTATCACAATCATGAACCAT+TGG | - | chr3_4:67886102-67886121 | None:intergenic | 35.0% | |
| TGCAAGCATGAATGATGTTT+GGG | - | chr3_4:67886202-67886221 | None:intergenic | 35.0% | |
| TTGCAAGCATGAATGATGTT+TGG | - | chr3_4:67886203-67886222 | None:intergenic | 35.0% | |
| GTGTATTAATATGGGAAAGC+TGG | + | chr3_4:67886371-67886390 | Msa0516360:intron | 35.0% | |
| TAAAGGTCACATGGGAATAT+GGG | - | chr3_4:67886429-67886448 | None:intergenic | 35.0% | |
| TTAAAGGTCACATGGGAATA+TGG | - | chr3_4:67886430-67886449 | None:intergenic | 35.0% | |
| TCTGTACTTAAAGGTCACAT+GGG | - | chr3_4:67886437-67886456 | None:intergenic | 35.0% | |
| TTCTGTACTTAAAGGTCACA+TGG | - | chr3_4:67886438-67886457 | None:intergenic | 35.0% | |
| GTCAACTCAGCAAGATAATA+CGG | - | chr3_4:67886535-67886554 | None:intergenic | 35.0% | |
| !!! | GTCATCATGTGCTATTTTCT+CGG | - | chr3_4:67886557-67886576 | None:intergenic | 35.0% |
| AGAAAATAGCACATGATGAC+AGG | + | chr3_4:67886557-67886576 | Msa0516360:CDS | 35.0% | |
| ! | ATAGTGTTGAATTGGGTGTT+GGG | - | chr3_4:67886653-67886672 | None:intergenic | 35.0% |
| ! | TATAGTGTTGAATTGGGTGT+TGG | - | chr3_4:67886654-67886673 | None:intergenic | 35.0% |
| AAGAAAACATGACACCTTTC+TGG | - | chr3_4:67886855-67886874 | None:intergenic | 35.0% | |
| GTTAGAAATAAACGAGCGAA+AGG | + | chr3_4:67887071-67887090 | Msa0516360:CDS | 35.0% | |
| AAATAAACGAGCGAAAGGAA+CGG | + | chr3_4:67887076-67887095 | Msa0516360:CDS | 35.0% | |
| GAAGAACTATTGGAAGATGA+CGG | + | chr3_4:67887153-67887172 | Msa0516360:CDS | 35.0% | |
| !! | AAAACACATTTTCAGGGAAG+CGG | - | chr3_4:67887261-67887280 | None:intergenic | 35.0% |
| ! | CAGGCAAAAACACATTTTCA+GGG | - | chr3_4:67887267-67887286 | None:intergenic | 35.0% |
| TGGATTTATCGACCATTAGA+TGG | + | chr3_4:67887288-67887307 | Msa0516360:intron | 35.0% | |
| GGATTTATCGACCATTAGAT+GGG | + | chr3_4:67887289-67887308 | Msa0516360:intron | 35.0% | |
| !! | CTACTTTTAAGCCCATCTAA+TGG | - | chr3_4:67887303-67887322 | None:intergenic | 35.0% |
| ! | CATTAGATGGGCTTAAAAGT+AGG | + | chr3_4:67887301-67887320 | Msa0516360:intron | 35.0% |
| ATAATATGTAGGACTGCTGT+AGG | - | chr3_4:67887336-67887355 | None:intergenic | 35.0% | |
| ACAGCAGTCCTACATATTAT+TGG | + | chr3_4:67887336-67887355 | Msa0516360:intron | 35.0% | |
| ! | GTGATTTATGAAATGGACTC+TGG | + | chr3_4:67887367-67887386 | Msa0516360:intron | 35.0% |
| CATATCTTTGGCAATCTGTA+AGG | + | chr3_4:67887497-67887516 | Msa0516360:CDS | 35.0% | |
| ATGGTTGTCTTGAAATGTTC+AGG | + | chr3_4:67887578-67887597 | Msa0516360:intron | 35.0% | |
| GGAAATGATTAAGAAAGAGG+AGG | + | chr3_4:67887614-67887633 | Msa0516360:CDS | 35.0% | |
| TGTAAAGGATAGACAATCCA+AGG | + | chr3_4:67887650-67887669 | Msa0516360:CDS | 35.0% | |
| ACAATAATGGTACTTCGGTA+AGG | - | chr3_4:67887698-67887717 | None:intergenic | 35.0% | |
| ! | TTACCGAAGTACCATTATTG+TGG | + | chr3_4:67887697-67887716 | Msa0516360:intron | 35.0% |
| CAACCACAATAATGGTACTT+CGG | - | chr3_4:67887703-67887722 | None:intergenic | 35.0% | |
| !! | ATTTTGCCATGTTTAGGATG+GGG | + | chr3_4:67888009-67888028 | Msa0516360:intron | 35.0% |
| AAACACCAACCACTGATATT+TGG | + | chr3_4:67888205-67888224 | Msa0516360:CDS | 35.0% | |
| AACACCAACCACTGATATTT+GGG | + | chr3_4:67888206-67888225 | Msa0516360:CDS | 35.0% | |
| TACAAATGAGAGAGCAAGAA+TGG | + | chr3_4:67888255-67888274 | Msa0516360:CDS | 35.0% | |
| TCTTAGCTAATGGAAAGCTT+TGG | + | chr3_4:67888342-67888361 | Msa0516360:intron | 35.0% | |
| !! | CTAATGGAAAGCTTTGGAAT+AGG | + | chr3_4:67888348-67888367 | Msa0516360:intron | 35.0% |
| ! | TCAGGCATAAAGTCTTTTGA+TGG | - | chr3_4:67888389-67888408 | None:intergenic | 35.0% |
| GTTAGAACAACAAAACTGCA+AGG | - | chr3_4:67888432-67888451 | None:intergenic | 35.0% | |
| !!! | CAGTTTTGTTGTTCTAACCT+AGG | + | chr3_4:67888434-67888453 | Msa0516360:intron | 35.0% |
| TTCTAACCTAGGAATGATAG+AGG | + | chr3_4:67888445-67888464 | Msa0516360:intron | 35.0% | |
| ATTGATCCTCTATCATTCCT+AGG | - | chr3_4:67888454-67888473 | None:intergenic | 35.0% | |
| ! | ATTGGCTTCTTCAATGAATC+TGG | - | chr3_4:67888602-67888621 | None:intergenic | 35.0% |
| TTGAAGAAGCCAATTCATCT+TGG | + | chr3_4:67888608-67888627 | Msa0516360:CDS | 35.0% | |
| ATCATTGTGCCAAGATGAAT+TGG | - | chr3_4:67888620-67888639 | None:intergenic | 35.0% | |
| ATTCATCTTGGCACAATGAT+AGG | + | chr3_4:67888620-67888639 | Msa0516360:CDS | 35.0% | |
| AATGATAGGAAGTTTAAGCC+AGG | + | chr3_4:67888634-67888653 | Msa0516360:CDS | 35.0% | |
| ATAGATTCAATTAGCCGCAA+GGG | - | chr3_4:67888765-67888784 | None:intergenic | 35.0% | |
| AATAGATTCAATTAGCCGCA+AGG | - | chr3_4:67888766-67888785 | None:intergenic | 35.0% | |
| TGCTCATTATTCTTCAACCT+GGG | - | chr3_4:67888792-67888811 | None:intergenic | 35.0% | |
| TTGCTCATTATTCTTCAACC+TGG | - | chr3_4:67888793-67888812 | None:intergenic | 35.0% | |
| AGGTTGAAGAATAATGAGCA+AGG | + | chr3_4:67888792-67888811 | Msa0516360:three_prime_UTR | 35.0% | |
| GGTTGAAGAATAATGAGCAA+GGG | + | chr3_4:67888793-67888812 | Msa0516360:three_prime_UTR | 35.0% | |
| ATGTAGTCAGATGAATTTCC+AGG | - | chr3_4:67888896-67888915 | None:intergenic | 35.0% | |
| !!! | ATATTTTTTGAGTGCAGCGT+AGG | + | chr3_4:67888920-67888939 | Msa0516360:three_prime_UTR | 35.0% |
| !!! | TATTTTTTGAGTGCAGCGTA+GGG | + | chr3_4:67888921-67888940 | Msa0516360:three_prime_UTR | 35.0% |
| GAATAAAAGAAGGTGAGATG+AGG | - | chr3_4:67888952-67888971 | None:intergenic | 35.0% | |
| !! | GATTCTGTTGGTAGTGTTTC+CGG | - | chr3_4:67885355-67885374 | None:intergenic | 40.0% |
| ! | CGTCTGAGATTTGATTCTGT+TGG | - | chr3_4:67885367-67885386 | None:intergenic | 40.0% |
| ! | AAGAGAAACGAAAGCGTACT+TGG | - | chr3_4:67885498-67885517 | None:intergenic | 40.0% |
| CTCTGCTAATGAAACCAAAG+AGG | + | chr3_4:67885648-67885667 | Msa0516360:CDS | 40.0% | |
| TACCAGGATGTACTTGAGAT+CGG | - | chr3_4:67885686-67885705 | None:intergenic | 40.0% | |
| !! | GAAGCATAAGAAGAAGTACC+AGG | - | chr3_4:67885702-67885721 | None:intergenic | 40.0% |
| TTATTGTAATGCGGTCACTG+TGG | + | chr3_4:67886035-67886054 | Msa0516360:intron | 40.0% | |
| !! | ATCATGAACCATTGGTTCCA+TGG | - | chr3_4:67886094-67886113 | None:intergenic | 40.0% |
| TTAAGTAAACCGAGTGAGAC+TGG | + | chr3_4:67886233-67886252 | Msa0516360:intron | 40.0% | |
| ATTAATATGGGAAAGCTGGC+TGG | + | chr3_4:67886375-67886394 | Msa0516360:intron | 40.0% | |
| CAAGATAATACGGCATCTGA+GGG | - | chr3_4:67886525-67886544 | None:intergenic | 40.0% | |
| !! | TGACAGGATACCGATTCTAA+AGG | + | chr3_4:67886573-67886592 | Msa0516360:CDS | 40.0% |
| ! | TAGTGTTGAATTGGGTGTTG+GGG | - | chr3_4:67886652-67886671 | None:intergenic | 40.0% |
| ! | TATCTCATTTTGTGAGGCGA+TGG | + | chr3_4:67886760-67886779 | Msa0516360:CDS | 40.0% |
| AAAAGCTGTTGCTGATCAGA+GGG | + | chr3_4:67886829-67886848 | Msa0516360:CDS | 40.0% | |
| ! | CCAGGCAAAAACACATTTTC+AGG | - | chr3_4:67887268-67887287 | None:intergenic | 40.0% |
| !! | CCTGAAAATGTGTTTTTGCC+TGG | + | chr3_4:67887265-67887284 | Msa0516360:intron | 40.0% |
| !! | GAAAATGTGTTTTTGCCTGG+TGG | + | chr3_4:67887268-67887287 | Msa0516360:intron | 40.0% |
| TAATGGTCGATAAATCCACC+AGG | - | chr3_4:67887286-67887305 | None:intergenic | 40.0% | |
| TGGGCTTAAAAGTAGGTTTG+TGG | + | chr3_4:67887308-67887327 | Msa0516360:intron | 40.0% | |
| GGGCTTAAAAGTAGGTTTGT+GGG | + | chr3_4:67887309-67887328 | Msa0516360:intron | 40.0% | |
| !! | TTTCTTCTCCTTTTCAGGCT+TGG | + | chr3_4:67887466-67887485 | Msa0516360:intron | 40.0% |
| CTAGTATTCCAAGCCTGAAA+AGG | - | chr3_4:67887477-67887496 | None:intergenic | 40.0% | |
| TGTTCAGGCATTTGATCTTC+TGG | + | chr3_4:67887593-67887612 | Msa0516360:intron | 40.0% | |
| TAATGGTACTTCGGTAAGGA+AGG | - | chr3_4:67887694-67887713 | None:intergenic | 40.0% | |
| CATCTATATGTCTCAAAGCC+CGG | - | chr3_4:67887892-67887911 | None:intergenic | 40.0% | |
| !!! | ATGCCAAGCTTCTGCTTTTT+TGG | - | chr3_4:67888071-67888090 | None:intergenic | 40.0% |
| CTTCCATTCACAAGACTTTG+TGG | - | chr3_4:67888232-67888251 | None:intergenic | 40.0% | |
| ATATGTACCTATGACTGGGT+TGG | - | chr3_4:67888294-67888313 | None:intergenic | 40.0% | |
| GGAAGCAGGACTAAAAGAAA+TGG | + | chr3_4:67888546-67888565 | Msa0516360:CDS | 40.0% | |
| !! | TAGAGCTTTGGATGATTGGA+AGG | + | chr3_4:67888702-67888721 | Msa0516360:CDS | 40.0% |
| ATTGGAAGGATGATAATCCG+CGG | + | chr3_4:67888716-67888735 | Msa0516360:CDS | 40.0% | |
| TAGATTCAATTAGCCGCAAG+GGG | - | chr3_4:67888764-67888783 | None:intergenic | 40.0% | |
| ATTTGCCATATAGCTCAACC+AGG | + | chr3_4:67889016-67889035 | Msa0516360:three_prime_UTR | 40.0% | |
| TTTAAAGGAAATCCCACTCC+TGG | - | chr3_4:67889037-67889056 | None:intergenic | 40.0% | |
| TCCATCTTCATCTCACCCAT+CGG | - | chr3_4:67885403-67885422 | None:intergenic | 45.0% | |
| ! | GAAACGAAAGCGTACTTGGT+CGG | - | chr3_4:67885494-67885513 | None:intergenic | 45.0% |
| TGTTCAGGAGCTTGTCAAGA+AGG | + | chr3_4:67885573-67885592 | Msa0516360:intron | 45.0% | |
| GTTCAGGAGCTTGTCAAGAA+GGG | + | chr3_4:67885574-67885593 | Msa0516360:intron | 45.0% | |
| ! | GGTTGTGCTGATATCCTCTT+TGG | - | chr3_4:67885665-67885684 | None:intergenic | 45.0% |
| AACCGATCTCAAGTACATCC+TGG | + | chr3_4:67885681-67885700 | Msa0516360:CDS | 45.0% | |
| !! | TTGTTTTGCTGATAGCCGCA+CGG | + | chr3_4:67885881-67885900 | Msa0516360:intron | 45.0% |
| AGAAACCGAATGCTGAAGCT+TGG | + | chr3_4:67885976-67885995 | Msa0516360:intron | 45.0% | |
| GAAACCGAATGCTGAAGCTT+GGG | + | chr3_4:67885977-67885996 | Msa0516360:intron | 45.0% | |
| AAACCGAATGCTGAAGCTTG+GGG | + | chr3_4:67885978-67885997 | Msa0516360:intron | 45.0% | |
| ! | GAGATGTTTGGTAGCTTCCA+TGG | + | chr3_4:67886074-67886093 | Msa0516360:intron | 45.0% |
| GCAAGATAATACGGCATCTG+AGG | - | chr3_4:67886526-67886545 | None:intergenic | 45.0% | |
| ! | TCTCACCTTCAGTTTTGCCT+GGG | - | chr3_4:67886602-67886621 | None:intergenic | 45.0% |
| GTGAGAGCTGATCTGTTGAA+AGG | + | chr3_4:67886616-67886635 | Msa0516360:intron | 45.0% | |
| !! | AGTGTTGAATTGGGTGTTGG+GGG | - | chr3_4:67886651-67886670 | None:intergenic | 45.0% |
| ! | CTCTGATCAGCAACAGCTTT+TGG | - | chr3_4:67886830-67886849 | None:intergenic | 45.0% |
| CAAAAGCTGTTGCTGATCAG+AGG | + | chr3_4:67886828-67886847 | Msa0516360:CDS | 45.0% | |
| TGACGGAGAAGAAGAAAGAG+AGG | + | chr3_4:67887170-67887189 | Msa0516360:CDS | 45.0% | |
| GGAGATGCTTTCTGCTGTAA+AGG | + | chr3_4:67887635-67887654 | Msa0516360:CDS | 45.0% | |
| ! | TGGGGATCAGGAGTTTTCTA+AGG | + | chr3_4:67888027-67888046 | Msa0516360:CDS | 45.0% |
| GTGCCAAAAAAGCAGAAGCT+TGG | + | chr3_4:67888065-67888084 | Msa0516360:CDS | 45.0% | |
| AAGGTAGCACATGTGATTGG+TGG | - | chr3_4:67888133-67888152 | None:intergenic | 45.0% | |
| TACCTTCGCTCAAGATGTTC+TGG | + | chr3_4:67888147-67888166 | Msa0516360:CDS | 45.0% | |
| TTCCAGAACATCTTGAGCGA+AGG | - | chr3_4:67888152-67888171 | None:intergenic | 45.0% | |
| ! | TTCGCTCAAGATGTTCTGGA+AGG | + | chr3_4:67888151-67888170 | Msa0516360:CDS | 45.0% |
| CTTTGTGGCCCAAATATCAG+TGG | - | chr3_4:67888217-67888236 | None:intergenic | 45.0% | |
| GCTTCCTCAATGCTCATAGT+GGG | - | chr3_4:67888532-67888551 | None:intergenic | 45.0% | |
| TGCTTCCTCAATGCTCATAG+TGG | - | chr3_4:67888533-67888552 | None:intergenic | 45.0% | |
| !! | ACTATGAGCATTGAGGAAGC+AGG | + | chr3_4:67888532-67888551 | Msa0516360:CDS | 45.0% |
| GAAGTTTAAGCCAGGTGAAG+AGG | + | chr3_4:67888642-67888661 | Msa0516360:CDS | 45.0% | |
| ACAGGATAGAGCTAGAGCTT+TGG | + | chr3_4:67888690-67888709 | Msa0516360:CDS | 45.0% | |
| !! | GAGCTAGAGCTTTGGATGAT+TGG | + | chr3_4:67888698-67888717 | Msa0516360:CDS | 45.0% |
| TTGGAAGGATGATAATCCGC+GGG | + | chr3_4:67888717-67888736 | Msa0516360:CDS | 45.0% | |
| AGGGGTAAGCTTCGAATTTC+CGG | - | chr3_4:67888746-67888765 | None:intergenic | 45.0% | |
| AATTCGAAGCTTACCCCTTG+CGG | + | chr3_4:67888748-67888767 | Msa0516360:CDS | 45.0% | |
| CATATAGCTCAACCAGGAGT+GGG | + | chr3_4:67889022-67889041 | Msa0516360:three_prime_UTR | 45.0% | |
| TCCGATGGGTGAGATGAAGA+TGG | + | chr3_4:67885399-67885418 | Msa0516360:exon | 50.0% | |
| GATGGGTGAGATGAAGATGG+AGG | + | chr3_4:67885402-67885421 | Msa0516360:exon | 50.0% | |
| !! | TGTTCAAACAGCGCCGGTAA+CGG | - | chr3_4:67885433-67885452 | None:intergenic | 50.0% |
| CTTGCTTGTTCAAACAGCGC+CGG | - | chr3_4:67885439-67885458 | None:intergenic | 50.0% | |
| ! | TGTTTTGCTGATAGCCGCAC+GGG | + | chr3_4:67885882-67885901 | Msa0516360:intron | 50.0% |
| ATACTCATTCCCAACCCGTG+CGG | - | chr3_4:67885899-67885918 | None:intergenic | 50.0% | |
| CAAGGCTGTGACACCATCTT+CGG | + | chr3_4:67885926-67885945 | Msa0516360:intron | 50.0% | |
| CAACCCCAAGCTTCAGCATT+CGG | - | chr3_4:67885984-67886003 | None:intergenic | 50.0% | |
| GGTAGCTTCCATGGAACCAA+TGG | + | chr3_4:67886083-67886102 | Msa0516360:intron | 50.0% | |
| ! | ACCGATTCTAAAGGCTTCCC+AGG | + | chr3_4:67886582-67886601 | Msa0516360:CDS | 50.0% |
| !! | GCCTGGGAAGCCTTTAGAAT+CGG | - | chr3_4:67886586-67886605 | None:intergenic | 50.0% |
| ! | CTCTCACCTTCAGTTTTGCC+TGG | - | chr3_4:67886603-67886622 | None:intergenic | 50.0% |
| !! | TTGAATTGGGTGTTGGGGGA+AGG | - | chr3_4:67886647-67886666 | None:intergenic | 50.0% |
| ! | ATTTTGTGAGGCGATGGAGC+TGG | + | chr3_4:67886766-67886785 | Msa0516360:CDS | 50.0% |
| GGCAGGAGAGGAAGAACTAT+TGG | + | chr3_4:67887143-67887162 | Msa0516360:CDS | 50.0% | |
| !! | TGGCATGATGAGCATTGAGC+AGG | - | chr3_4:67887436-67887455 | None:intergenic | 50.0% |
| CCTGATCCCCATCCTAAACA+TGG | - | chr3_4:67888018-67888037 | None:intergenic | 50.0% | |
| ! | CCATGTTTAGGATGGGGATC+AGG | + | chr3_4:67888015-67888034 | Msa0516360:intron | 50.0% |
| GCACATGTGATTGGTGGAGA+TGG | - | chr3_4:67888127-67888146 | None:intergenic | 50.0% | |
| GCGAAGGTAGCACATGTGAT+TGG | - | chr3_4:67888136-67888155 | None:intergenic | 50.0% | |
| TTTGTGTTCGTGTGCTTGCG+AGG | - | chr3_4:67888188-67888207 | None:intergenic | 50.0% | |
| GTGGCCCAAATATCAGTGGT+TGG | - | chr3_4:67888213-67888232 | None:intergenic | 50.0% | |
| ! | GGGCCACAAAGTCTTGTGAA+TGG | + | chr3_4:67888226-67888245 | Msa0516360:CDS | 50.0% |
| AGGTCTTCCAACCCAGTCAT+AGG | + | chr3_4:67888284-67888303 | Msa0516360:CDS | 50.0% | |
| ! | GATGCCCACTATGAGCATTG+AGG | + | chr3_4:67888525-67888544 | Msa0516360:CDS | 50.0% |
| GTTTAAGCCAGGTGAAGAGG+AGG | + | chr3_4:67888645-67888664 | Msa0516360:CDS | 50.0% | |
| TGAAGATGACGATGCTGCAC+AGG | + | chr3_4:67888672-67888691 | Msa0516360:CDS | 50.0% | |
| TGGAAGGATGATAATCCGCG+GGG | + | chr3_4:67888718-67888737 | Msa0516360:CDS | 50.0% | |
| CCACTCCTGGTTGAGCTATA+TGG | - | chr3_4:67889024-67889043 | None:intergenic | 50.0% | |
| CCATATAGCTCAACCAGGAG+TGG | + | chr3_4:67889021-67889040 | Msa0516360:three_prime_UTR | 50.0% | |
| GATGGAGGACATGCCGTTAC+CGG | + | chr3_4:67885417-67885436 | Msa0516360:CDS | 55.0% | |
| CGGCGCTGTTTGAACAAGCA+AGG | + | chr3_4:67885437-67885456 | Msa0516360:CDS | 55.0% | |
| AAAGCGTACTTGGTCGGCAC+CGG | - | chr3_4:67885488-67885507 | None:intergenic | 55.0% | |
| GCTTGTCAAGAAGGGATGCG+AGG | + | chr3_4:67885582-67885601 | Msa0516360:CDS | 55.0% | |
| !! | CGAAGATGGTGTCACAGCCT+TGG | - | chr3_4:67885928-67885947 | None:intergenic | 55.0% |
| GGCTTCCCAGGCAAAACTGA+AGG | + | chr3_4:67886594-67886613 | Msa0516360:CDS | 55.0% | |
| GATGGAGCTGGTCCCAAAAG+AGG | + | chr3_4:67886778-67886797 | Msa0516360:CDS | 55.0% | |
| TGCTGATCAGAGGGCCAGAA+AGG | + | chr3_4:67886838-67886857 | Msa0516360:CDS | 55.0% | |
| TTCCTCTCCTGCCTCAACAG+GGG | - | chr3_4:67887136-67887155 | None:intergenic | 55.0% | |
| CTTCCTCTCCTGCCTCAACA+GGG | - | chr3_4:67887137-67887156 | None:intergenic | 55.0% | |
| TCTTCCTCTCCTGCCTCAAC+AGG | - | chr3_4:67887138-67887157 | None:intergenic | 55.0% | |
| GAGAGCAAGAATGGCAGCTC+AGG | + | chr3_4:67888264-67888283 | Msa0516360:CDS | 55.0% | |
| TAAGCCAGGTGAAGAGGAGG+AGG | + | chr3_4:67888648-67888667 | Msa0516360:CDS | 55.0% | |
| TCATCCTCCTCCTCTTCACC+TGG | - | chr3_4:67888655-67888674 | None:intergenic | 55.0% | |
| TTGCTGATAGCCGCACGGGT+TGG | + | chr3_4:67885886-67885905 | Msa0516360:intron | 60.0% | |
| TGCTGATAGCCGCACGGGTT+GGG | + | chr3_4:67885887-67885906 | Msa0516360:intron | 60.0% | |
| AACGAGCGAAAGGAACGGCG+TGG | + | chr3_4:67887081-67887100 | Msa0516360:CDS | 60.0% | |
| ACGAGCGAAAGGAACGGCGT+GGG | + | chr3_4:67887082-67887101 | Msa0516360:CDS | 60.0% | |
| TGCCTCAACAGGGGTGGACA+GGG | - | chr3_4:67887127-67887146 | None:intergenic | 60.0% | |
| GATGATAATCCGCGGGGTGC+CGG | + | chr3_4:67888724-67888743 | Msa0516360:CDS | 60.0% | |
| TTCGAATTTCCGGCACCCCG+CGG | - | chr3_4:67888736-67888755 | None:intergenic | 60.0% | |
| ! | TTGGTCGGCACCGGACTCAG+TGG | - | chr3_4:67885479-67885498 | None:intergenic | 65.0% |
| TGCCCTGTCCACCCCTGTTG+AGG | + | chr3_4:67887122-67887141 | Msa0516360:CDS | 65.0% | |
| CTGCCTCAACAGGGGTGGAC+AGG | - | chr3_4:67887128-67887147 | None:intergenic | 65.0% | |
| CTGTCCACCCCTGTTGAGGC+AGG | + | chr3_4:67887126-67887145 | Msa0516360:CDS | 65.0% | |
| CTCTCCTGCCTCAACAGGGG+TGG | - | chr3_4:67887133-67887152 | None:intergenic | 65.0% | |
| CACCCCTGTTGAGGCAGGAG+AGG | + | chr3_4:67887131-67887150 | Msa0516360:CDS | 65.0% | |
| CACGCCACCGCCACTGAGTC+CGG | + | chr3_4:67885466-67885485 | Msa0516360:CDS | 70.0% | |
| ! | GTCGGCACCGGACTCAGTGG+CGG | - | chr3_4:67885476-67885495 | None:intergenic | 70.0% |
| CGGACTCAGTGGCGGTGGCG+TGG | - | chr3_4:67885468-67885487 | None:intergenic | 75.0% | |
| ! | GGCACCGGACTCAGTGGCGG+TGG | - | chr3_4:67885473-67885492 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 67885327 | 67889067 | 67885327 | ID=Msa0516360;Name=Msa0516360 |
| chr3_4 | mRNA | 67885327 | 67889067 | 67885327 | ID=Msa0516360-mRNA-1;Parent=Msa0516360;Name=Msa0516360-mRNA-1;_AED=0.12;_eAED=0.12;_QI=76|1|1|1|1|1|9|293|403 |
| chr3_4 | exon | 67885327 | 67885498 | 67885327 | ID=Msa0516360-mRNA-1:exon:17741;Parent=Msa0516360-mRNA-1 |
| chr3_4 | exon | 67885580 | 67885702 | 67885580 | ID=Msa0516360-mRNA-1:exon:17742;Parent=Msa0516360-mRNA-1 |
| chr3_4 | exon | 67886529 | 67886615 | 67886529 | ID=Msa0516360-mRNA-1:exon:17743;Parent=Msa0516360-mRNA-1 |
| chr3_4 | exon | 67886755 | 67886859 | 67886755 | ID=Msa0516360-mRNA-1:exon:17744;Parent=Msa0516360-mRNA-1 |
| chr3_4 | exon | 67887030 | 67887191 | 67887030 | ID=Msa0516360-mRNA-1:exon:17745;Parent=Msa0516360-mRNA-1 |
| chr3_4 | exon | 67887483 | 67887518 | 67887483 | ID=Msa0516360-mRNA-1:exon:17746;Parent=Msa0516360-mRNA-1 |
| chr3_4 | exon | 67887600 | 67887671 | 67887600 | ID=Msa0516360-mRNA-1:exon:17747;Parent=Msa0516360-mRNA-1 |
| chr3_4 | exon | 67888025 | 67888305 | 67888025 | ID=Msa0516360-mRNA-1:exon:17748;Parent=Msa0516360-mRNA-1 |
| chr3_4 | exon | 67888525 | 67889067 | 67888525 | ID=Msa0516360-mRNA-1:exon:17749;Parent=Msa0516360-mRNA-1 |
| chr3_4 | five_prime_UTR | 67885327 | 67885402 | 67885327 | ID=Msa0516360-mRNA-1:five_prime_utr;Parent=Msa0516360-mRNA-1 |
| chr3_4 | CDS | 67885403 | 67885498 | 67885403 | ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1 |
| chr3_4 | CDS | 67885580 | 67885702 | 67885580 | ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1 |
| chr3_4 | CDS | 67886529 | 67886615 | 67886529 | ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1 |
| chr3_4 | CDS | 67886755 | 67886859 | 67886755 | ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1 |
| chr3_4 | CDS | 67887030 | 67887191 | 67887030 | ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1 |
| chr3_4 | CDS | 67887483 | 67887518 | 67887483 | ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1 |
| chr3_4 | CDS | 67887600 | 67887671 | 67887600 | ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1 |
| chr3_4 | CDS | 67888025 | 67888305 | 67888025 | ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1 |
| chr3_4 | CDS | 67888525 | 67888774 | 67888525 | ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1 |
| chr3_4 | three_prime_UTR | 67888775 | 67889067 | 67888775 | ID=Msa0516360-mRNA-1:three_prime_utr;Parent=Msa0516360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
