AlfalfaGEDB | Msa0516360

M. sativa cultivar zhongmu-4 / Msa0516360

KEGG: K17606
GO: GO:0001101 GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006808 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009966 GO:0009967 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010646 GO:0010647 GO:0010921 GO:0019208 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019900 GO:0019902 GO:0019903 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0030307 GO:0031323 GO:0031399 GO:0031929 GO:0032006 GO:0032008 GO:0032268 GO:0033993 GO:0035303 GO:0035304 GO:0035556 GO:0040008 GO:0042221 GO:0043666 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051241 GO:0051246 GO:0051336 GO:0051716 GO:0051721 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0097305 GO:0098772 GO:1900140 GO:1901700 GO:1902531 GO:1902533 GO:2000026
PFAM: PF04177.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0516360	XP_039687607.1	98.263	403	7	0	1	403	1	403	0.0	821

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0516360	sp\|D2K8N5\|TAP46_NICBE	71.782	404	112	2	1	403	1	403	0.0	596

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0516360	G7J7F3	98.020	404	7	1	1	403	1	404	0.0	816

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0516360	Msa1084270	0.848446	6.098850e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0516360	MtrunA17_Chr3g0126951	98.020	404	7	1	1	403	1	404	0.0	816
Msa0516360	MtrunA17_Chr1g0171331	93.675	332	15	1	72	403	19	344	0.0	600

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0516360	AT5G53000.1	70.370	405	118	1	1	403	1	405	0.0	580

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Find 130 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGTTGCTGATCAGA+GGG	0.591137	3_4:+67886829	Msa0516360:CDS
AAACACCAACCACTGATATT+TGG	0.154577	3_4:+67888205	Msa0516360:CDS
AAAGCGTACTTGGTCGGCAC+CGG	0.566041	3_4:-67885485	None:intergenic
AAATAAACGAGCGAAAGGAA+CGG	0.614011	3_4:+67887076	Msa0516360:CDS
AAATGGAAATTATGAATACA+TGG	0.530525	3_4:+67888563	Msa0516360:CDS
AACACCAACCACTGATATTT+GGG	0.339739	3_4:+67888206	Msa0516360:CDS
AACCGATCTCAAGTACATCC+TGG	0.592669	3_4:+67885681	Msa0516360:CDS
AACGAGCGAAAGGAACGGCG+TGG	0.663839	3_4:+67887081	Msa0516360:CDS
AAGAAAACATGACACCTTTC+TGG	0.241137	3_4:-67886852	None:intergenic
AAGGTAGCACATGTGATTGG+TGG	0.577338	3_4:-67888130	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCCGGTGAAAGATAATAAT+TGG	-	chr3_4:67885338-67885357	None:intergenic	30.0%
GAAAACATGATTAATAGGCT+TGG	+	chr3_4:67885619-67885638	Msa0516360:CDS	30.0%
GGAATGAGTATAAAAATCCA+AGG	+	chr3_4:67885908-67885927	Msa0516360:intron	30.0%
CTGTGCAATTTATTGTAATG+CGG	+	chr3_4:67886026-67886045	Msa0516360:intron	30.0%
TTGTGTTCTTAAGAGATGTT+TGG	+	chr3_4:67886062-67886081	Msa0516360:intron	30.0%
TTCATGATTGTGATAGAAAC+TGG	+	chr3_4:67886106-67886125	Msa0516360:intron	30.0%
ACTAGTTGTTGCACATATTT+AGG	-	chr3_4:67886282-67886301	None:intergenic	30.0%
GAGTTAGAATCTTATATGCA+AGG	+	chr3_4:67886800-67886819	Msa0516360:CDS	30.0%
GTTAGAATCTTATATGCAAG+GGG	+	chr3_4:67886802-67886821	Msa0516360:CDS	30.0%
AAGCTAGTCCAATAATATGT+AGG	-	chr3_4:67887347-67887366	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	67885327	67889067	67885327	ID=Msa0516360;Name=Msa0516360
chr3_4	mRNA	67885327	67889067	67885327	ID=Msa0516360-mRNA-1;Parent=Msa0516360;Name=Msa0516360-mRNA-1;_AED=0.12;_eAED=0.12;_QI=76\|1\|1\|1\|1\|1\|9\|293\|403
chr3_4	exon	67885327	67885498	67885327	ID=Msa0516360-mRNA-1:exon:17741;Parent=Msa0516360-mRNA-1
chr3_4	exon	67885580	67885702	67885580	ID=Msa0516360-mRNA-1:exon:17742;Parent=Msa0516360-mRNA-1
chr3_4	exon	67886529	67886615	67886529	ID=Msa0516360-mRNA-1:exon:17743;Parent=Msa0516360-mRNA-1
chr3_4	exon	67886755	67886859	67886755	ID=Msa0516360-mRNA-1:exon:17744;Parent=Msa0516360-mRNA-1
chr3_4	exon	67887030	67887191	67887030	ID=Msa0516360-mRNA-1:exon:17745;Parent=Msa0516360-mRNA-1
chr3_4	exon	67887483	67887518	67887483	ID=Msa0516360-mRNA-1:exon:17746;Parent=Msa0516360-mRNA-1
chr3_4	exon	67887600	67887671	67887600	ID=Msa0516360-mRNA-1:exon:17747;Parent=Msa0516360-mRNA-1
chr3_4	exon	67888025	67888305	67888025	ID=Msa0516360-mRNA-1:exon:17748;Parent=Msa0516360-mRNA-1
chr3_4	exon	67888525	67889067	67888525	ID=Msa0516360-mRNA-1:exon:17749;Parent=Msa0516360-mRNA-1
chr3_4	five_prime_UTR	67885327	67885402	67885327	ID=Msa0516360-mRNA-1:five_prime_utr;Parent=Msa0516360-mRNA-1
chr3_4	CDS	67885403	67885498	67885403	ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1
chr3_4	CDS	67885580	67885702	67885580	ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1
chr3_4	CDS	67886529	67886615	67886529	ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1
chr3_4	CDS	67886755	67886859	67886755	ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1
chr3_4	CDS	67887030	67887191	67887030	ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1
chr3_4	CDS	67887483	67887518	67887483	ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1
chr3_4	CDS	67887600	67887671	67887600	ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1
chr3_4	CDS	67888025	67888305	67888025	ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1
chr3_4	CDS	67888525	67888774	67888525	ID=Msa0516360-mRNA-1:cds;Parent=Msa0516360-mRNA-1
chr3_4	three_prime_UTR	67888775	67889067	67888775	ID=Msa0516360-mRNA-1:three_prime_utr;Parent=Msa0516360-mRNA-1

Gene Sequence

>Msa0516360

ATGGGTGAGATGAAGATGGAGGACATGCCGTTACCGGCGCTGTTTGAACAAGCAAGGAAGATCCACGCCACCGCCACTGAGTCCGGTGCCGACCAAGAGCTTGTCAAGAAGGGATGCGAGGCTCTCAATAAATGCGAAAACATGATTAATAGGCTTGGTTTATTCTCTGCTAATGAAACCAAAGAGGATATCAGCACAACCGATCTCAAGTACATCCTGATGCCGTATTATCTTGCTGAGTTGACCGAGAAAATAGCACATGATGACAGGATACCGATTCTAAAGGCTTCCCAGGCAAAACTGAAGGAATTTATCTCATTTTGTGAGGCGATGGAGCTGGTCCCAAAAGAGGAGTTAGAATCTTATATGCAAGGGGTACCAAAAGCTGTTGCTGATCAGAGGGCCAGAAAGATAGCTAGATTTAAACGACAAAAAGCTGCAGAATCGAAGTTGTTAGAAATAAACGAGCGAAAGGAACGGCGTGGGCGTTCTACTAAAGCAGCTGCCCTGTCCACCCCTGTTGAGGCAGGAGAGGAAGAACTATTGGAAGATGACGGAGAAGAAGAAAGAGAGGCTTGGAATACTAGCATATCTTTGGCAATCTGTAAGGCATTTGATCTTCTGGAAATGATTAAGAAAGAGGAGGAGATGCTTTCTGCTGTAAAGGATAGACAATCCAAGGATGGGGATCAGGAGTTTTCTAAGGATATTATGGATGAACGTGCCAAAAAAGCAGAAGCTTGGCATCGCAATGCTGCAGTTCATGCACAGTATACGAAGCCATCTCCACCAATCACATGTGCTACCTTCGCTCAAGATGTTCTGGAAGGAAGAGCACAAGCCTCGCAAGCACACGAACACAAACACCAACCACTGATATTTGGGCCACAAAGTCTTGTGAATGGAAGTTTTACAAATGAGAGAGCAAGAATGGCAGCTCAGGTCTTCCAACCCAGTCATAGGATGCCCACTATGAGCATTGAGGAAGCAGGACTAAAAGAAATGGAAATTATGAATACATGGCAAGAGAACACTGCCAGATTCATTGAAGAAGCCAATTCATCTTGGCACAATGATAGGAAGTTTAAGCCAGGTGAAGAGGAGGAGGATGAAGATGACGATGCTGCACAGGATAGAGCTAGAGCTTTGGATGATTGGAAGGATGATAATCCGCGGGGTGCCGGAAATTCGAAGCTTACCCCTTGCGGCTAA

Protein sequence

>Msa0516360

MGEMKMEDMPLPALFEQARKIHATATESGADQELVKKGCEALNKCENMINRLGLFSANETKEDISTTDLKYILMPYYLAELTEKIAHDDRIPILKASQAKLKEFISFCEAMELVPKEELESYMQGVPKAVADQRARKIARFKRQKAAESKLLEINERKERRGRSTKAAALSTPVEAGEEELLEDDGEEEREAWNTSISLAICKAFDLLEMIKKEEEMLSAVKDRQSKDGDQEFSKDIMDERAKKAEAWHRNAAVHAQYTKPSPPITCATFAQDVLEGRAQASQAHEHKHQPLIFGPQSLVNGSFTNERARMAAQVFQPSHRMPTMSIEEAGLKEMEIMNTWQENTARFIEEANSSWHNDRKFKPGEEEEDEDDDAAQDRARALDDWKDDNPRGAGNSKLTPCG*