AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0517240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0517240 MtrunA17_Chr3g0128541 97.429 350 8 1 1 350 1 349 0.0 701
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0517240 AT2G40800.1 62.391 343 117 3 12 348 41 377 2.40e-141 405
Msa0517240 AT3G56430.1 57.143 364 121 4 12 344 74 433 4.35e-137 397
Msa0517240 AT2G40800.2 56.471 255 99 3 12 260 41 289 3.00e-92 278

Find 132 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATTCTATAAACTTTATC+AGG 0.141587 3_4:-68728072 None:intergenic
AAGGAAGAGAGGATGGATTT+AGG 0.151084 3_4:-68726729 None:intergenic
CGACTGGGAGGGTGGAAAAT+TGG 0.172637 3_4:-68726765 None:intergenic
TTTCTTCTCTTGTTGATTAC+AGG 0.201817 3_4:+68730842 Msa0517240:three_prime_UTR
AGGAAGAGAGGATGGATTTA+GGG 0.234938 3_4:-68726728 None:intergenic
TTGTTCTTTGTGCTATTCTT+TGG 0.247047 3_4:+68726976 Msa0517240:CDS
GACTGGGAGGGTGGAAAATT+GGG 0.256416 3_4:-68726764 None:intergenic
ATCAAGATCATCAAATTCTT+TGG 0.261593 3_4:-68730696 None:intergenic
GTTGATGTTCCCATGGCTTC+TGG 0.275349 3_4:+68730569 Msa0517240:CDS
CAGCAGCACCAAACAGAAAA+AGG 0.308344 3_4:-68726950 None:intergenic
TCTGAAGGCATGGCTAAGTA+TGG 0.317661 3_4:+68727038 Msa0517240:CDS
AACCTCCTGACGCTCTCTTT+TGG 0.326013 3_4:-68730741 None:intergenic
AATCATTGATGTTTCTCTTC+CGG 0.333322 3_4:+68730819 Msa0517240:exon
ATCAGATACAAACGCTGGTC+TGG 0.340990 3_4:-68730593 None:intergenic
TGCTCAGATTCTTGAAGTTA+TGG 0.348723 3_4:+68728116 Msa0517240:CDS
AGAAAATCAAGCCAAGTCTT+AGG 0.350882 3_4:+68728202 Msa0517240:CDS
GGAGGAAGAGTTGGTGGAGT+TGG 0.355408 3_4:-68726638 None:intergenic
TTTCAAGGCCAAGAAGGTTC+TGG 0.364522 3_4:+68726839 Msa0517240:CDS
AGGTTTCTCCAGAACCTTCT+TGG 0.366103 3_4:-68726847 None:intergenic
ATTCTTTGGAGGATTATGTT+TGG 0.371669 3_4:+68726990 Msa0517240:CDS
GCTCAGATTCTTGAAGTTAT+GGG 0.387775 3_4:+68728117 Msa0517240:CDS
GAGGAAGAGTTGGTGGAGTT+GGG 0.388624 3_4:-68726637 None:intergenic
GAAGAGTGGTGAAGTGGAGG+AGG 0.390340 3_4:-68726684 None:intergenic
TCCAATCAGTCCTTGACATT+GGG 0.399769 3_4:-68731111 None:intergenic
TTCTTTGTGCTATTCTTTGG+AGG 0.401581 3_4:+68726979 Msa0517240:CDS
GATGGATTTAGGGTGGGGTG+TGG 0.403426 3_4:-68726718 None:intergenic
GACCAGCGTTTGTATCTGAT+TGG 0.406586 3_4:+68730596 Msa0517240:CDS
GGATGCCAAAAGAGAGCGTC+AGG 0.410942 3_4:+68730736 Msa0517240:CDS
TCTGAAAACGCCGATACGAC+TGG 0.413528 3_4:-68726781 None:intergenic
TGCGTTGCGTTGCGCTGCGC+AGG 0.415895 3_4:-68726460 None:intergenic
AACTTGAGGCTTTCTTCAAA+AGG 0.425511 3_4:+68726922 Msa0517240:CDS
CTCTTAAATCAGTTCCTGTA+AGG 0.432262 3_4:-68728146 None:intergenic
ACTGGGAGGGTGGAAAATTG+GGG 0.435232 3_4:-68726763 None:intergenic
GCCCAATGTCAAGGACTGAT+TGG 0.444990 3_4:+68731110 Msa0517240:three_prime_UTR
GCTGCCATTGCTTTCACCAC+AGG 0.445208 3_4:-68730671 None:intergenic
CTAGCAAGCAATAATAATCA+TGG 0.445372 3_4:+68731081 Msa0517240:three_prime_UTR
GTTGAGAAGGTTGAAAATAG+TGG 0.449934 3_4:+68730785 Msa0517240:CDS
CATAAAAGGTTCTGAGAGAA+AGG 0.450312 3_4:+68728251 Msa0517240:CDS
AGCAACAATAGCAGCAGAAA+GGG 0.450974 3_4:-68727069 None:intergenic
ATGGATTTAGGGTGGGGTGT+GGG 0.454697 3_4:-68726717 None:intergenic
TTAAGAGCCTATGTGATGTC+AGG 0.454783 3_4:+68728162 Msa0517240:CDS
CTGCCATTGCTTTCACCACA+GGG 0.455409 3_4:-68730670 None:intergenic
AAGAGTGGTGAAGTGGAGGA+GGG 0.455436 3_4:-68726683 None:intergenic
TGTTGTTCTTTCTGAAGGCA+TGG 0.459160 3_4:+68727028 Msa0517240:CDS
GGTGGCGGAGGAAGAGTTGG+TGG 0.460218 3_4:-68726644 None:intergenic
GTGCGGAAGTGAAAGGGTGG+CGG 0.461090 3_4:-68726659 None:intergenic
CGGAAGTGAAAGGGTGGCGG+AGG 0.461997 3_4:-68726656 None:intergenic
ACCACTGAACCTCGGTTTCA+AGG 0.465783 3_4:+68726824 Msa0517240:CDS
CAACGTTTGCTCCTAAGACT+TGG 0.466386 3_4:-68728213 None:intergenic
ATGGAGGAAGGAAGAGAGGA+TGG 0.475280 3_4:-68726736 None:intergenic
CTGGTCTGGGCCAGAAGCCA+TGG 0.478808 3_4:-68730579 None:intergenic
TTTGAAGAGTGGTGAAGTGG+AGG 0.482982 3_4:-68726687 None:intergenic
GAGTGGTGAAGTGGAGGAGG+GGG 0.485967 3_4:-68726681 None:intergenic
GTGAATGGAGGAAGGAAGAG+AGG 0.491713 3_4:-68726740 None:intergenic
ATCCAATCAGTCCTTGACAT+TGG 0.492594 3_4:-68731112 None:intergenic
TCAGATACAAACGCTGGTCT+GGG 0.495241 3_4:-68730592 None:intergenic
TGATGATCTTGATGAGATTG+AGG 0.500289 3_4:+68730706 Msa0517240:CDS
CTTAAATCAGTTCCTGTAAG+GGG 0.502763 3_4:-68728144 None:intergenic
AGAGAGGATGGATTTAGGGT+GGG 0.506943 3_4:-68726724 None:intergenic
CACGCGGTACCGTGAGGCCA+TGG 0.508270 3_4:+68726893 Msa0517240:CDS
CCTCGGTTTCAAGGCCAAGA+AGG 0.508496 3_4:+68726833 Msa0517240:CDS
CCGACCGTTATTTCAATCTC+CGG 0.517253 3_4:+68726546 Msa0517240:five_prime_UTR
GGAATGGACTCAGCGTTTGT+TGG 0.519014 3_4:+68731006 Msa0517240:three_prime_UTR
TCTTGATGAGATTGAGGATG+AGG 0.521181 3_4:+68730712 Msa0517240:CDS
AAGGGTGGCGGAGGAAGAGT+TGG 0.521568 3_4:-68726647 None:intergenic
AAACATCAATGATTATTGCT+TGG 0.522621 3_4:-68730810 None:intergenic
CCCTGATAAAGTTTATAGAA+TGG 0.526896 3_4:+68728071 Msa0517240:CDS
TTCCACCCTCCCAGTCGTAT+CGG 0.529276 3_4:+68726771 Msa0517240:CDS
CTCGCCGGAGATTGAAATAA+CGG 0.529512 3_4:-68726550 None:intergenic
AAGAGAGGATGGATTTAGGG+TGG 0.531745 3_4:-68726725 None:intergenic
TAATCAACAAGAGAAGAAAC+CGG 0.534708 3_4:-68730838 None:intergenic
CTGGGAGGGTGGAAAATTGG+GGG 0.535393 3_4:-68726762 None:intergenic
AGAGTGGTGAAGTGGAGGAG+GGG 0.535576 3_4:-68726682 None:intergenic
CCATTCTATAAACTTTATCA+GGG 0.535969 3_4:-68728071 None:intergenic
AAGCAACAATAGCAGCAGAA+AGG 0.536715 3_4:-68727070 None:intergenic
GCATCGAGAAGAAGTTGAGA+AGG 0.537185 3_4:+68730772 Msa0517240:CDS
TAGTTAACCACATCATAGAC+AGG 0.537406 3_4:-68731061 None:intergenic
CTGAAAACGCCGATACGACT+GGG 0.540096 3_4:-68726780 None:intergenic
CCTTCTTGGCCTTGAAACCG+AGG 0.540343 3_4:-68726833 None:intergenic
CGCCGATACGACTGGGAGGG+TGG 0.545100 3_4:-68726773 None:intergenic
GGGGTGCGGAAGTGAAAGGG+TGG 0.550967 3_4:-68726662 None:intergenic
TCTGGAGAAACCTACGGCCG+CGG 0.555143 3_4:+68726857 Msa0517240:CDS
GAGAGGATGGATTTAGGGTG+GGG 0.563342 3_4:-68726723 None:intergenic
TAGCAAGCAATAATAATCAT+GGG 0.565605 3_4:+68731082 Msa0517240:three_prime_UTR
GCTAGCCGTTGATGTTCCCA+TGG 0.565913 3_4:+68730562 Msa0517240:CDS
AGGGTTTGTATATCCGCTCA+AGG 0.566257 3_4:+68728037 Msa0517240:intron
TCTTAAATCAGTTCCTGTAA+GGG 0.573835 3_4:-68728145 None:intergenic
TGGTCTGGGCCAGAAGCCAT+GGG 0.574055 3_4:-68730578 None:intergenic
AAAAGAGTACACGGTTGGTG+GGG 0.574607 3_4:+68730625 Msa0517240:CDS
GCCTTGAAACCGAGGTTCAG+TGG 0.579549 3_4:-68726825 None:intergenic
TAAGAGCCTATGTGATGTCA+GGG 0.580638 3_4:+68728163 Msa0517240:CDS
ATAAAAGGTTCTGAGAGAAA+GGG 0.581290 3_4:+68728252 Msa0517240:CDS
TTAATTGTGTGGCATTGTAG+TGG 0.583194 3_4:-68726484 None:intergenic
GCAGAGGTCACCGCGGCCGT+AGG 0.586798 3_4:-68726867 None:intergenic
TGATGAGATTGAGGATGAGG+AGG 0.589562 3_4:+68730715 Msa0517240:CDS
TTAAATCAGTTCCTGTAAGG+GGG 0.593454 3_4:-68728143 None:intergenic
TCAAAGCCACCACTGAACCT+CGG 0.600013 3_4:+68726816 Msa0517240:CDS
TGGGCGAATGCCCAATGTCA+AGG 0.601394 3_4:+68731101 Msa0517240:three_prime_UTR
AAAGAGTACACGGTTGGTGG+GGG 0.602508 3_4:+68730626 Msa0517240:CDS
AGATGTGTTAAGTCTTGTCA+TGG 0.606087 3_4:-68728094 None:intergenic
CAGCAATTTGTGTTACAACA+AGG 0.609379 3_4:-68730929 None:intergenic
GACATCGACATACATCGGAA+TGG 0.612256 3_4:+68730990 Msa0517240:three_prime_UTR
AGCCTCAAGTTGCAAAACCA+TGG 0.612564 3_4:-68726910 None:intergenic
AGAAGCCATGGGAACATCAA+CGG 0.616261 3_4:-68730567 None:intergenic
GAAGGTTCTGGAGAAACCTA+CGG 0.620194 3_4:+68726851 Msa0517240:CDS
CGGCGAGTTCTATCACAGAT+CGG 0.630911 3_4:+68726566 Msa0517240:five_prime_UTR
GTTGCAAAACCATGGCCTCA+CGG 0.632840 3_4:-68726902 None:intergenic
GGGATTATACACTCAGGACA+AGG 0.634623 3_4:-68731040 None:intergenic
TGACAGACATCGACATACAT+CGG 0.637549 3_4:+68730985 Msa0517240:three_prime_UTR
TGCTTTCACGCGGTACCGTG+AGG 0.638373 3_4:+68726887 Msa0517240:CDS
TAAATCAGTTCCTGTAAGGG+GGG 0.651045 3_4:-68728142 None:intergenic
TAATTGAACTGTTAATTGTG+TGG 0.651478 3_4:-68726495 None:intergenic
TGCCAAAAGAGAGCGTCAGG+AGG 0.651941 3_4:+68730739 Msa0517240:CDS
AGACCCTGTGGTGAAAGCAA+TGG 0.653556 3_4:+68730667 Msa0517240:CDS
GGTTGATTGTGTGCCTTGAG+CGG 0.654227 3_4:-68728050 None:intergenic
CGATCTGTGATAGAACTCGC+CGG 0.654965 3_4:-68726565 None:intergenic
ATGTCAAGAACAAAATGCGG+TGG 0.658750 3_4:+68726597 Msa0517240:CDS
CCGGAGATTGAAATAACGGT+CGG 0.659048 3_4:-68726546 None:intergenic
ACGGTACCGCGTGAAAGCAG+AGG 0.660527 3_4:-68726883 None:intergenic
AAACGCCGATACGACTGGGA+GGG 0.661669 3_4:-68726776 None:intergenic
TTGAAACCGAGGTTCAGTGG+TGG 0.661963 3_4:-68726822 None:intergenic
AGAGCCTATGTGATGTCAGG+GGG 0.670155 3_4:+68728165 Msa0517240:CDS
AAGAGCCTATGTGATGTCAG+GGG 0.683418 3_4:+68728164 Msa0517240:CDS
CAAATGTCAAGAACAAAATG+CGG 0.685833 3_4:+68726594 Msa0517240:CDS
CGGTGACCTCTGCTTTCACG+CGG 0.689212 3_4:+68726877 Msa0517240:CDS
TAGACAGGGATTATACACTC+AGG 0.691775 3_4:-68731046 None:intergenic
TTCCAATCAGATACAAACGC+TGG 0.692801 3_4:-68730598 None:intergenic
AGTTAACCACATCATAGACA+GGG 0.700668 3_4:-68731060 None:intergenic
TATAATCCCTGTCTATGATG+TGG 0.702245 3_4:+68731054 Msa0517240:three_prime_UTR
ATCTGATCTAAGAGACCCTG+TGG 0.712384 3_4:+68730655 Msa0517240:CDS
AAAACGCCGATACGACTGGG+AGG 0.714464 3_4:-68726777 None:intergenic
CGTGAAAGCAGAGGTCACCG+CGG 0.795470 3_4:-68726874 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTAACATCTTTTA+AGG + chr3_4:68728017-68728036 Msa0517240:intron 10.0%
!!! TTATTTTTAACATCTTTTAA+GGG + chr3_4:68728018-68728037 Msa0517240:intron 10.0%
!!! ATATTATTAATTTTGTTAAG+TGG - chr3_4:68729611-68729630 None:intergenic 10.0%
!!! AGTAAATTTTGTAATTTTAT+TGG + chr3_4:68729632-68729651 Msa0517240:intron 10.0%
!!! TAAAAAACAAAATTTTAAAC+TGG + chr3_4:68729712-68729731 Msa0517240:intron 10.0%
!!! AAAATTAATTTAACATTTTG+GGG - chr3_4:68729883-68729902 None:intergenic 10.0%
!! AACTTTATTGTATGAATAAA+TGG - chr3_4:68729444-68729463 None:intergenic 15.0%
!!! TTTATGATTTTTTTTAAGTG+TGG - chr3_4:68729467-68729486 None:intergenic 15.0%
!!! GTTTTATGAATTGTATAAAT+AGG + chr3_4:68730079-68730098 Msa0517240:intron 15.0%
!! TCATAATCTATAATCAAAAC+TGG - chr3_4:68727231-68727250 None:intergenic 20.0%
!! AAAGATTTCATAAGTTATCT+CGG + chr3_4:68727367-68727386 Msa0517240:intron 20.0%
!!! TCTTATTTAAACTAATCTAC+TGG - chr3_4:68727490-68727509 None:intergenic 20.0%
!!! AACAGTGTTTTTTTTAGATT+GGG + chr3_4:68727905-68727924 Msa0517240:intron 20.0%
!! ATTAATGATATAAACAAGAG+GGG - chr3_4:68728326-68728345 None:intergenic 20.0%
!! GATTAATGATATAAACAAGA+GGG - chr3_4:68728327-68728346 None:intergenic 20.0%
!!! CTGATGATATTTTAAGAATT+AGG - chr3_4:68728595-68728614 None:intergenic 20.0%
!!! ATATTAGGTATGTTTTCATT+TGG - chr3_4:68728746-68728765 None:intergenic 20.0%
!! GTAAAATCTATAGATTGATA+TGG + chr3_4:68728839-68728858 Msa0517240:intron 20.0%
!! ATTGTATAAATAGGAAGTTA+TGG + chr3_4:68730088-68730107 Msa0517240:intron 20.0%
!!! GTTAATTTGGAATAATGATA+GGG + chr3_4:68730128-68730147 Msa0517240:intron 20.0%
!! TGTGATATAAGTTAAAACAT+AGG + chr3_4:68730379-68730398 Msa0517240:intron 20.0%
!! AATTTTCTTGTAGAGAAAGA+AGG + chr3_4:68726416-68726435 Msa0517240:five_prime_UTR 25.0%
! TAATTGAACTGTTAATTGTG+TGG - chr3_4:68726498-68726517 None:intergenic 25.0%
!! TGCAAAATTTTATGTGCATT+AGG + chr3_4:68727137-68727156 Msa0517240:intron 25.0%
!! TTATTGATTATGATCCTGTT+TGG + chr3_4:68727177-68727196 Msa0517240:intron 25.0%
! AACTTAACAATGCTATATAC+TGG + chr3_4:68727267-68727286 Msa0517240:intron 25.0%
! ATGAGAATTATGATTCTGTT+TGG + chr3_4:68727545-68727564 Msa0517240:intron 25.0%
! TAGCTTATACATTATGTACA+AGG - chr3_4:68727648-68727667 None:intergenic 25.0%
! TTTCAAAGAGCTTATGAAAA+CGG - chr3_4:68727786-68727805 None:intergenic 25.0%
!! TCTTATTTGAACTAATCTAC+TGG - chr3_4:68727829-68727848 None:intergenic 25.0%
!!! CAACAGTGTTTTTTTTAGAT+TGG + chr3_4:68727904-68727923 Msa0517240:intron 25.0%
! CCATTCTATAAACTTTATCA+GGG - chr3_4:68728074-68728093 None:intergenic 25.0%
! CGATTAATGATATAAACAAG+AGG - chr3_4:68728328-68728347 None:intergenic 25.0%
! TAAGACAAACAAATTCTATC+AGG - chr3_4:68728351-68728370 None:intergenic 25.0%
! TAGTAGAATTTGATGCAAAA+TGG - chr3_4:68728425-68728444 None:intergenic 25.0%
! TTGAATGCTTACTATATCTT+CGG - chr3_4:68728662-68728681 None:intergenic 25.0%
! GATATAGTAAGCATTCAAAT+CGG + chr3_4:68728664-68728683 Msa0517240:intron 25.0%
!! AGCGTAATGCTTATATTTTA+AGG + chr3_4:68729016-68729035 Msa0517240:intron 25.0%
!!! GTAATGCTTATATTTTAAGG+AGG + chr3_4:68729019-68729038 Msa0517240:intron 25.0%
!! AGATTATATGTAGAGTGTTT+AGG - chr3_4:68729945-68729964 None:intergenic 25.0%
! AGCTCGGTAATTTATTATTA+AGG + chr3_4:68729982-68730001 Msa0517240:intron 25.0%
! TCGGTAATTTATTATTAAGG+AGG + chr3_4:68729985-68730004 Msa0517240:intron 25.0%
! TAAATAGGAAGTTATGGAAA+AGG + chr3_4:68730094-68730113 Msa0517240:intron 25.0%
! AAATAGGAAGTTATGGAAAA+GGG + chr3_4:68730095-68730114 Msa0517240:intron 25.0%
!! GGTTAATTTGGAATAATGAT+AGG + chr3_4:68730127-68730146 Msa0517240:intron 25.0%
! ATCAAGATCATCAAATTCTT+TGG - chr3_4:68730699-68730718 None:intergenic 25.0%
! AAACATCAATGATTATTGCT+TGG - chr3_4:68730813-68730832 None:intergenic 25.0%
! CCTTAGAAAAAAACTCAAAT+TGG - chr3_4:68730901-68730920 None:intergenic 25.0%
!!! CCAATTTGAGTTTTTTTCTA+AGG + chr3_4:68730898-68730917 Msa0517240:three_prime_UTR 25.0%
! TAGCAAGCAATAATAATCAT+GGG + chr3_4:68731082-68731101 Msa0517240:three_prime_UTR 25.0%
! CAGTTCAATTAGTCCATTTT+TGG + chr3_4:68726507-68726526 Msa0517240:five_prime_UTR 30.0%
CAAATGTCAAGAACAAAATG+CGG + chr3_4:68726594-68726613 Msa0517240:CDS 30.0%
! AGGAATAACCTTTTTCTGTT+TGG + chr3_4:68726942-68726961 Msa0517240:CDS 30.0%
! TTGTTCTTTGTGCTATTCTT+TGG + chr3_4:68726976-68726995 Msa0517240:CDS 30.0%
! ATTCTTTGGAGGATTATGTT+TGG + chr3_4:68726990-68727009 Msa0517240:CDS 30.0%
!!! ACTTTTGTTGTTCTTTCTGA+AGG + chr3_4:68727023-68727042 Msa0517240:CDS 30.0%
ATTAAGCTGTTTATCCAAAC+AGG - chr3_4:68727194-68727213 None:intergenic 30.0%
TTATAGATTATGACCCTGTT+TGG + chr3_4:68727238-68727257 Msa0517240:intron 30.0%
! TTAAGTTGCTTATCCAAACA+GGG - chr3_4:68727254-68727273 None:intergenic 30.0%
!! TATATACTGGTTCTGATCAT+AGG + chr3_4:68727280-68727299 Msa0517240:intron 30.0%
AATAAGCTGAAAACAGCTTA+TGG + chr3_4:68727402-68727421 Msa0517240:intron 30.0%
ATAGAGAATTAGAGATGGTT+TGG - chr3_4:68727517-68727536 None:intergenic 30.0%
ATGTCATAGAGAATTAGAGA+TGG - chr3_4:68727522-68727541 None:intergenic 30.0%
TCTTATTGTAGATTATGACC+CGG + chr3_4:68727598-68727617 Msa0517240:intron 30.0%
TTCATTTCTGTAAACTCTCT+AGG - chr3_4:68727734-68727753 None:intergenic 30.0%
!!! GTGTTTTTTTTAGATTGGGA+AGG + chr3_4:68727909-68727928 Msa0517240:intron 30.0%
! GTGAATTCTGCATTGATATA+TGG + chr3_4:68727978-68727997 Msa0517240:intron 30.0%
CCCTGATAAAGTTTATAGAA+TGG + chr3_4:68728071-68728090 Msa0517240:CDS 30.0%
GCCATTCTATAAACTTTATC+AGG - chr3_4:68728075-68728094 None:intergenic 30.0%
TCTTAAATCAGTTCCTGTAA+GGG - chr3_4:68728148-68728167 None:intergenic 30.0%
! GCTTGATTTTCTTTAACGTA+AGG - chr3_4:68728194-68728213 None:intergenic 30.0%
! TTTCTCATTTTCCCCATAAA+AGG + chr3_4:68728237-68728256 Msa0517240:CDS 30.0%
! TTTCTCTCAGAACCTTTTAT+GGG - chr3_4:68728252-68728271 None:intergenic 30.0%
!! ATAAAAGGTTCTGAGAGAAA+GGG + chr3_4:68728252-68728271 Msa0517240:CDS 30.0%
TGTTGAAGTCAAGAAAAAAC+AGG + chr3_4:68728284-68728303 Msa0517240:CDS 30.0%
GTTGAAGTCAAGAAAAAACA+GGG + chr3_4:68728285-68728304 Msa0517240:CDS 30.0%
TATCATGACATGGATAAAAC+AGG - chr3_4:68728469-68728488 None:intergenic 30.0%
AGCTAACAAATATCATGACA+TGG - chr3_4:68728479-68728498 None:intergenic 30.0%
CAAAATCATACAGATGAAGT+TGG - chr3_4:68728552-68728571 None:intergenic 30.0%
GAATTAGGAAGACATAATTC+TGG - chr3_4:68728580-68728599 None:intergenic 30.0%
AAGCATTCAAATCGGAATAA+TGG + chr3_4:68728672-68728691 Msa0517240:intron 30.0%
!!! AATCAAGCCAACTTTTTCAA+AGG - chr3_4:68728897-68728916 None:intergenic 30.0%
!! TTTGAAAAAGTTGGCTTGAT+TGG + chr3_4:68728896-68728915 Msa0517240:intron 30.0%
!! TTGAAAAAGTTGGCTTGATT+GGG + chr3_4:68728897-68728916 Msa0517240:intron 30.0%
AGCAATGAGTTAAATCTTGA+AGG + chr3_4:68728954-68728973 Msa0517240:intron 30.0%
! AGGTTTAGTTTCTTTGCTAT+CGG + chr3_4:68729078-68729097 Msa0517240:intron 30.0%
!! CACATTTTCATTTGAGATAC+CGG + chr3_4:68729194-68729213 Msa0517240:intron 30.0%
!! ACATTTTCATTTGAGATACC+GGG + chr3_4:68729195-68729214 Msa0517240:intron 30.0%
CGAGGAAATGTTATAAAACT+CGG + chr3_4:68729350-68729369 Msa0517240:intron 30.0%
AAATGTTATAAAACTCGGAC+CGG + chr3_4:68729355-68729374 Msa0517240:intron 30.0%
!!! CGGTATGAATTTTTAAAGTG+TGG - chr3_4:68729498-68729517 None:intergenic 30.0%
AGACCAAATGTATAGTGTTT+AGG + chr3_4:68729834-68729853 Msa0517240:intron 30.0%
CATAATTGTTCCTTAATGAG+AGG - chr3_4:68730025-68730044 None:intergenic 30.0%
! ATTTGGAATAATGATAGGGA+AGG + chr3_4:68730132-68730151 Msa0517240:intron 30.0%
TACCAATTCTTGTCATTCTA+AGG + chr3_4:68730195-68730214 Msa0517240:intron 30.0%
TACCTTAGAATGACAAGAAT+TGG - chr3_4:68730200-68730219 None:intergenic 30.0%
TAAGAATCCTACCACAATAT+TGG - chr3_4:68730272-68730291 None:intergenic 30.0%
TGTACATTTCTTGTCTTCTA+GGG - chr3_4:68730462-68730481 None:intergenic 30.0%
TTGTACATTTCTTGTCTTCT+AGG - chr3_4:68730463-68730482 None:intergenic 30.0%
! TGGAAATGAAAAAGAGTACA+CGG + chr3_4:68730616-68730635 Msa0517240:CDS 30.0%
AATCATTGATGTTTCTCTTC+CGG + chr3_4:68730819-68730838 Msa0517240:exon 30.0%
TAATCAACAAGAGAAGAAAC+CGG - chr3_4:68730841-68730860 None:intergenic 30.0%
! TTTCTTCTCTTGTTGATTAC+AGG + chr3_4:68730842-68730861 Msa0517240:three_prime_UTR 30.0%
CTAGCAAGCAATAATAATCA+TGG + chr3_4:68731081-68731100 Msa0517240:three_prime_UTR 30.0%
TTAATTGTGTGGCATTGTAG+TGG - chr3_4:68726487-68726506 None:intergenic 35.0%
!! AATTTTGAAGAGTGGTGAAG+TGG - chr3_4:68726693-68726712 None:intergenic 35.0%
!! TGGGTAGTAATTTTGAAGAG+TGG - chr3_4:68726701-68726720 None:intergenic 35.0%
AACTTGAGGCTTTCTTCAAA+AGG + chr3_4:68726922-68726941 Msa0517240:CDS 35.0%
! TTCTTTGTGCTATTCTTTGG+AGG + chr3_4:68726979-68726998 Msa0517240:CDS 35.0%
ATTATCCAAACTGGAAAGGA+AGG - chr3_4:68727113-68727132 None:intergenic 35.0%
TCCTTTCCAGTTTGGATAAT+TGG + chr3_4:68727113-68727132 Msa0517240:intron 35.0%
TCCAATTATCCAAACTGGAA+AGG - chr3_4:68727117-68727136 None:intergenic 35.0%
TTGCATCCAATTATCCAAAC+TGG - chr3_4:68727122-68727141 None:intergenic 35.0%
! GTTAAGTTGCTTATCCAAAC+AGG - chr3_4:68727255-68727274 None:intergenic 35.0%
TTTCATAAGTTATCTCGGAG+AGG + chr3_4:68727372-68727391 Msa0517240:intron 35.0%
! ATTAAGTTGCTTATCCCAAC+CGG - chr3_4:68727620-68727639 None:intergenic 35.0%
AATGAACTGAAATCAGCTCA+TGG + chr3_4:68727748-68727767 Msa0517240:intron 35.0%
ATGAACTGAAATCAGCTCAT+GGG + chr3_4:68727749-68727768 Msa0517240:intron 35.0%
! AGATGTGTTAAGTCTTGTCA+TGG - chr3_4:68728097-68728116 None:intergenic 35.0%
TGCTCAGATTCTTGAAGTTA+TGG + chr3_4:68728116-68728135 Msa0517240:CDS 35.0%
GCTCAGATTCTTGAAGTTAT+GGG + chr3_4:68728117-68728136 Msa0517240:CDS 35.0%
TTAAATCAGTTCCTGTAAGG+GGG - chr3_4:68728146-68728165 None:intergenic 35.0%
CTTAAATCAGTTCCTGTAAG+GGG - chr3_4:68728147-68728166 None:intergenic 35.0%
CTCTTAAATCAGTTCCTGTA+AGG - chr3_4:68728149-68728168 None:intergenic 35.0%
AGAAAATCAAGCCAAGTCTT+AGG + chr3_4:68728202-68728221 Msa0517240:CDS 35.0%
! TTCTCTCAGAACCTTTTATG+GGG - chr3_4:68728251-68728270 None:intergenic 35.0%
! CTTTCTCTCAGAACCTTTTA+TGG - chr3_4:68728253-68728272 None:intergenic 35.0%
!! CATAAAAGGTTCTGAGAGAA+AGG + chr3_4:68728251-68728270 Msa0517240:CDS 35.0%
CTTCCAAGAAATCAAACTTC+GGG - chr3_4:68728504-68728523 None:intergenic 35.0%
GCTTCCAAGAAATCAAACTT+CGG - chr3_4:68728505-68728524 None:intergenic 35.0%
!! TTCTTGGAAGCATTCATATC+TGG + chr3_4:68728514-68728533 Msa0517240:intron 35.0%
AAGCATTCATATCTGGTGAA+TGG + chr3_4:68728521-68728540 Msa0517240:intron 35.0%
! AGGAAGACATAATTCTGGAA+AGG - chr3_4:68728575-68728594 None:intergenic 35.0%
CATCAGATTGTCTTTAGTCT+AGG + chr3_4:68728609-68728628 Msa0517240:intron 35.0%
TGTCTTTAGTCTAGGAATAG+TGG + chr3_4:68728617-68728636 Msa0517240:intron 35.0%
TTTAGTCTAGGAATAGTGGT+GGG + chr3_4:68728621-68728640 Msa0517240:intron 35.0%
!! TTCAAATCGGAATAATGGAC+TGG + chr3_4:68728677-68728696 Msa0517240:intron 35.0%
! CGCTTGTGCTTTTATATACA+TGG - chr3_4:68728779-68728798 None:intergenic 35.0%
! GTAAAACCGCCCTTTAAAAA+TGG - chr3_4:68728805-68728824 None:intergenic 35.0%
! GATGCTTCCTTTGAAAAAGT+TGG + chr3_4:68728887-68728906 Msa0517240:intron 35.0%
! TTCCTTTTGGCACATTTCAT+TGG + chr3_4:68728993-68729012 Msa0517240:intron 35.0%
! GGTTTAGTTTCTTTGCTATC+GGG + chr3_4:68729079-68729098 Msa0517240:intron 35.0%
! GTTACTTTGGACTTGAAACA+TGG + chr3_4:68729131-68729150 Msa0517240:intron 35.0%
AAAATGTGAACTTCAGCACA+AGG - chr3_4:68729182-68729201 None:intergenic 35.0%
!! CATTTTCATTTGAGATACCG+GGG + chr3_4:68729196-68729215 Msa0517240:intron 35.0%
!! ATTTTCATTTGAGATACCGG+GGG + chr3_4:68729197-68729216 Msa0517240:intron 35.0%
CAAAAGCCTCAATGAACATA+CGG - chr3_4:68729239-68729258 None:intergenic 35.0%
ACAATAGTTGGGTCATAACA+TGG - chr3_4:68729265-68729284 None:intergenic 35.0%
TGTTATGACCCAACTATTGT+TGG + chr3_4:68729265-68729284 Msa0517240:intron 35.0%
TTTCCTTGAATTACACAACG+AGG + chr3_4:68729332-68729351 Msa0517240:intron 35.0%
TTTCCTCGTTGTGTAATTCA+AGG - chr3_4:68729338-68729357 None:intergenic 35.0%
GTACTATGTCAATGGATCAT+TGG + chr3_4:68729395-68729414 Msa0517240:intron 35.0%
TATGAACATCAACTGAAGCA+CGG - chr3_4:68729518-68729537 None:intergenic 35.0%
CAGTGAAAACTAGTTAGACT+CGG - chr3_4:68729758-68729777 None:intergenic 35.0%
AACTGATCTGAGCACTATAT+GGG - chr3_4:68729799-68729818 None:intergenic 35.0%
TAACTGATCTGAGCACTATA+TGG - chr3_4:68729800-68729819 None:intergenic 35.0%
GTGCCTAAACACTATACATT+TGG - chr3_4:68729840-68729859 None:intergenic 35.0%
TTAAGGAGGATTCCTTTGTT+AGG + chr3_4:68729999-68730018 Msa0517240:intron 35.0%
!! GTCATTCTAAGGTATTGTAC+TGG + chr3_4:68730206-68730225 Msa0517240:intron 35.0%
AAGGATGTTACTGGTATCTA+TGG - chr3_4:68730312-68730331 None:intergenic 35.0%
TACAAGGAATTTGGAGGATA+AGG - chr3_4:68730331-68730350 None:intergenic 35.0%
GGAAATTACAAGGAATTTGG+AGG - chr3_4:68730337-68730356 None:intergenic 35.0%
GGAGGAAATTACAAGGAATT+TGG - chr3_4:68730340-68730359 None:intergenic 35.0%
AACTTATATCACACATGCAG+AGG - chr3_4:68730372-68730391 None:intergenic 35.0%
ACAAGAAATGTACAATGCAG+AGG + chr3_4:68730468-68730487 Msa0517240:intron 35.0%
CAAGAAATGTACAATGCAGA+GGG + chr3_4:68730469-68730488 Msa0517240:intron 35.0%
AAGAAATGTACAATGCAGAG+GGG + chr3_4:68730470-68730489 Msa0517240:intron 35.0%
! AATGAAAAAGAGTACACGGT+TGG + chr3_4:68730620-68730639 Msa0517240:CDS 35.0%
TGATGATCTTGATGAGATTG+AGG + chr3_4:68730706-68730725 Msa0517240:CDS 35.0%
GTTGAGAAGGTTGAAAATAG+TGG + chr3_4:68730785-68730804 Msa0517240:CDS 35.0%
CAGCAATTTGTGTTACAACA+AGG - chr3_4:68730932-68730951 None:intergenic 35.0%
TATAATCCCTGTCTATGATG+TGG + chr3_4:68731054-68731073 Msa0517240:three_prime_UTR 35.0%
AGTTAACCACATCATAGACA+GGG - chr3_4:68731063-68731082 None:intergenic 35.0%
TAGTTAACCACATCATAGAC+AGG - chr3_4:68731064-68731083 None:intergenic 35.0%
!!! AGTCCATTTTTGGTGTCGAT+CGG + chr3_4:68726517-68726536 Msa0517240:five_prime_UTR 40.0%
ATGTCAAGAACAAAATGCGG+TGG + chr3_4:68726597-68726616 Msa0517240:CDS 40.0%
! AGGAAGAGAGGATGGATTTA+GGG - chr3_4:68726731-68726750 None:intergenic 40.0%
! AAGGAAGAGAGGATGGATTT+AGG - chr3_4:68726732-68726751 None:intergenic 40.0%
!!! TTTTTCTGTTTGGTGCTGCT+GGG + chr3_4:68726952-68726971 Msa0517240:CDS 40.0%
! TGTTGTTCTTTCTGAAGGCA+TGG + chr3_4:68727028-68727047 Msa0517240:CDS 40.0%
AGCAACAATAGCAGCAGAAA+GGG - chr3_4:68727072-68727091 None:intergenic 40.0%
AAGCAACAATAGCAGCAGAA+AGG - chr3_4:68727073-68727092 None:intergenic 40.0%
TCATAGGTTATGACGCTGTT+TGG + chr3_4:68727296-68727315 Msa0517240:intron 40.0%
! TTGTGACTTGTGAGACTGTT+TGG - chr3_4:68727458-68727477 None:intergenic 40.0%
ATTGTAGATTATGACCCGGT+TGG + chr3_4:68727602-68727621 Msa0517240:intron 40.0%
TTGTAGATTATGACCCGGTT+GGG + chr3_4:68727603-68727622 Msa0517240:intron 40.0%
! TTAAGTTGCTTATCCCAACC+GGG - chr3_4:68727619-68727638 None:intergenic 40.0%
CAAATAAGACTCCAAACCAG+CGG + chr3_4:68727840-68727859 Msa0517240:intron 40.0%
TAAATCAGTTCCTGTAAGGG+GGG - chr3_4:68728145-68728164 None:intergenic 40.0%
TTAAGAGCCTATGTGATGTC+AGG + chr3_4:68728162-68728181 Msa0517240:CDS 40.0%
TAAGAGCCTATGTGATGTCA+GGG + chr3_4:68728163-68728182 Msa0517240:CDS 40.0%
AGTCAAGAAAAAACAGGGCA+AGG + chr3_4:68728290-68728309 Msa0517240:CDS 40.0%
! TAGCCCGAAGTTTGATTTCT+TGG + chr3_4:68728498-68728517 Msa0517240:intron 40.0%
CTTTAGTCTAGGAATAGTGG+TGG + chr3_4:68728620-68728639 Msa0517240:intron 40.0%
CATGGTCAGAGCATGATATT+AGG - chr3_4:68728761-68728780 None:intergenic 40.0%
!! ACAAGCGCGTCCATTTTTAA+AGG + chr3_4:68728792-68728811 Msa0517240:intron 40.0%
!! CAAGCGCGTCCATTTTTAAA+GGG + chr3_4:68728793-68728812 Msa0517240:intron 40.0%
!! AAAAAGTTGGCTTGATTGGG+TGG + chr3_4:68728900-68728919 Msa0517240:intron 40.0%
!! AAAAGTTGGCTTGATTGGGT+GGG + chr3_4:68728901-68728920 Msa0517240:intron 40.0%
! TAAGCCATCCATGTTCCTTT+TGG + chr3_4:68728980-68728999 Msa0517240:intron 40.0%
GAAATGTGCCAAAAGGAACA+TGG - chr3_4:68728991-68729010 None:intergenic 40.0%
CTCCAATGAAATGTGCCAAA+AGG - chr3_4:68728998-68729017 None:intergenic 40.0%
GATGCTTGCACAAGTTACTT+TGG + chr3_4:68729118-68729137 Msa0517240:intron 40.0%
!! TTTTCATTTGAGATACCGGG+GGG + chr3_4:68729198-68729217 Msa0517240:intron 40.0%
TCTTCACCGTATGTTCATTG+AGG + chr3_4:68729230-68729249 Msa0517240:intron 40.0%
ATGACCCAACTATTGTTGGT+TGG + chr3_4:68729269-68729288 Msa0517240:intron 40.0%
GCTTCCAACCAACAATAGTT+GGG - chr3_4:68729276-68729295 None:intergenic 40.0%
TGCTTCCAACCAACAATAGT+TGG - chr3_4:68729277-68729296 None:intergenic 40.0%
TGAAAACTAGTTAGACTCGG+TGG - chr3_4:68729755-68729774 None:intergenic 40.0%
!!! CGAGTCTAACTAGTTTTCAC+TGG + chr3_4:68729756-68729775 Msa0517240:intron 40.0%
GTTTAGGCACACATACAATG+AGG + chr3_4:68729850-68729869 Msa0517240:intron 40.0%
ATTACCGAGCTACTCTTCTA+TGG - chr3_4:68729973-68729992 None:intergenic 40.0%
CTTAATGAGAGGCCTAACAA+AGG - chr3_4:68730014-68730033 None:intergenic 40.0%
CTTTGTTAGGCCTCTCATTA+AGG + chr3_4:68730012-68730031 Msa0517240:intron 40.0%
TAGGAAGTTATGGAAAAGGG+AGG + chr3_4:68730098-68730117 Msa0517240:intron 40.0%
AGGAAGTTATGGAAAAGGGA+GGG + chr3_4:68730099-68730118 Msa0517240:intron 40.0%
ATCCAAGACTCTCGAATTCT+TGG + chr3_4:68730159-68730178 Msa0517240:intron 40.0%
AAGACTCTCGAATTCTTGGA+GGG + chr3_4:68730163-68730182 Msa0517240:intron 40.0%
!! TCTAAGGTATTGTACTGGTG+TGG + chr3_4:68730211-68730230 Msa0517240:intron 40.0%
CTTCTGCTGTTCCAATATTG+TGG + chr3_4:68730258-68730277 Msa0517240:intron 40.0%
TGCTGTTCCAATATTGTGGT+AGG + chr3_4:68730262-68730281 Msa0517240:intron 40.0%
TTGGAGGATAAGGATGTTAC+TGG - chr3_4:68730321-68730340 None:intergenic 40.0%
GAGGGGAAATTTATGCTTCA+AGG + chr3_4:68730487-68730506 Msa0517240:intron 40.0%
TTCCAATCAGATACAAACGC+TGG - chr3_4:68730601-68730620 None:intergenic 40.0%
! AAAAAGAGTACACGGTTGGT+GGG + chr3_4:68730624-68730643 Msa0517240:CDS 40.0%
TCTTGATGAGATTGAGGATG+AGG + chr3_4:68730712-68730731 Msa0517240:CDS 40.0%
TGACAGACATCGACATACAT+CGG + chr3_4:68730985-68731004 Msa0517240:three_prime_UTR 40.0%
TAGACAGGGATTATACACTC+AGG - chr3_4:68731049-68731068 None:intergenic 40.0%
TCCAATCAGTCCTTGACATT+GGG - chr3_4:68731114-68731133 None:intergenic 40.0%
ATCCAATCAGTCCTTGACAT+TGG - chr3_4:68731115-68731134 None:intergenic 40.0%
!!! GTCCATTTTTGGTGTCGATC+GGG + chr3_4:68726518-68726537 Msa0517240:five_prime_UTR 45.0%
CCGGAGATTGAAATAACGGT+CGG - chr3_4:68726549-68726568 None:intergenic 45.0%
! CCGACCGTTATTTCAATCTC+CGG + chr3_4:68726546-68726565 Msa0517240:five_prime_UTR 45.0%
CTCGCCGGAGATTGAAATAA+CGG - chr3_4:68726553-68726572 None:intergenic 45.0%
TTTGAAGAGTGGTGAAGTGG+AGG - chr3_4:68726690-68726709 None:intergenic 45.0%
! AGAGAGGATGGATTTAGGGT+GGG - chr3_4:68726727-68726746 None:intergenic 45.0%
! AAGAGAGGATGGATTTAGGG+TGG - chr3_4:68726728-68726747 None:intergenic 45.0%
TTTCAAGGCCAAGAAGGTTC+TGG + chr3_4:68726839-68726858 Msa0517240:CDS 45.0%
AGGTTTCTCCAGAACCTTCT+TGG - chr3_4:68726850-68726869 None:intergenic 45.0%
!! GAAGGTTCTGGAGAAACCTA+CGG + chr3_4:68726851-68726870 Msa0517240:CDS 45.0%
! AGCCTCAAGTTGCAAAACCA+TGG - chr3_4:68726913-68726932 None:intergenic 45.0%
CAGCAGCACCAAACAGAAAA+AGG - chr3_4:68726953-68726972 None:intergenic 45.0%
!!! CTTTTTCTGTTTGGTGCTGC+TGG + chr3_4:68726951-68726970 Msa0517240:CDS 45.0%
!!! TTTTCTGTTTGGTGCTGCTG+GGG + chr3_4:68726953-68726972 Msa0517240:CDS 45.0%
! TCTGAAGGCATGGCTAAGTA+TGG + chr3_4:68727038-68727057 Msa0517240:CDS 45.0%
CCAAACTGGAAAGGAAGGAA+AGG - chr3_4:68727108-68727127 None:intergenic 45.0%
CCTTTCCTTCCTTTCCAGTT+TGG + chr3_4:68727105-68727124 Msa0517240:intron 45.0%
AAGTTATCTCGGAGAGGTTG+TGG + chr3_4:68727378-68727397 Msa0517240:intron 45.0%
ACAAATAGTCATACAGCCGC+TGG - chr3_4:68727859-68727878 None:intergenic 45.0%
AGGGTTTGTATATCCGCTCA+AGG + chr3_4:68728037-68728056 Msa0517240:intron 45.0%
AAGAGCCTATGTGATGTCAG+GGG + chr3_4:68728164-68728183 Msa0517240:CDS 45.0%
CAACGTTTGCTCCTAAGACT+TGG - chr3_4:68728216-68728235 None:intergenic 45.0%
AAAATGGAAAGACGACGCTG+AGG - chr3_4:68728409-68728428 None:intergenic 45.0%
!! AAAGTTGGCTTGATTGGGTG+GGG + chr3_4:68728902-68728921 Msa0517240:intron 45.0%
TGTGCCAAAAGGAACATGGA+TGG - chr3_4:68728987-68729006 None:intergenic 45.0%
!! GCTGACATGGGCTTTATTAG+AGG + chr3_4:68729058-68729077 Msa0517240:intron 45.0%
ACAGAATGTCCATGCCTACA+AGG + chr3_4:68729156-68729175 Msa0517240:intron 45.0%
! TTTCATTTGAGATACCGGGG+GGG + chr3_4:68729199-68729218 Msa0517240:intron 45.0%
!! TGGTGAGGGTACTATGTCAA+TGG + chr3_4:68729387-68729406 Msa0517240:intron 45.0%
!!! GTTAGACTCGGTGGATTTTG+TGG - chr3_4:68729746-68729765 None:intergenic 45.0%
GTGACCATAGAAGAGTAGCT+CGG + chr3_4:68729966-68729985 Msa0517240:intron 45.0%
TATGGAAAAGGGAGGGAAGT+TGG + chr3_4:68730106-68730125 Msa0517240:intron 45.0%
! GGGAGGGAAGTTGGTTAATT+TGG + chr3_4:68730115-68730134 Msa0517240:intron 45.0%
CTCCAAGAATTCGAGAGTCT+TGG - chr3_4:68730164-68730183 None:intergenic 45.0%
CAAGACTCTCGAATTCTTGG+AGG + chr3_4:68730162-68730181 Msa0517240:intron 45.0%
GAGAGGAGGAGGAAATTACA+AGG - chr3_4:68730347-68730366 None:intergenic 45.0%
AGAAGCCATGGGAACATCAA+CGG - chr3_4:68730570-68730589 None:intergenic 45.0%
! TCAGATACAAACGCTGGTCT+GGG - chr3_4:68730595-68730614 None:intergenic 45.0%
ATCAGATACAAACGCTGGTC+TGG - chr3_4:68730596-68730615 None:intergenic 45.0%
GACCAGCGTTTGTATCTGAT+TGG + chr3_4:68730596-68730615 Msa0517240:CDS 45.0%
! GAAAAAGAGTACACGGTTGG+TGG + chr3_4:68730623-68730642 Msa0517240:CDS 45.0%
! AAAAGAGTACACGGTTGGTG+GGG + chr3_4:68730625-68730644 Msa0517240:CDS 45.0%
ATCTGATCTAAGAGACCCTG+TGG + chr3_4:68730655-68730674 Msa0517240:CDS 45.0%
TGATGAGATTGAGGATGAGG+AGG + chr3_4:68730715-68730734 Msa0517240:CDS 45.0%
GCATCGAGAAGAAGTTGAGA+AGG + chr3_4:68730772-68730791 Msa0517240:CDS 45.0%
GACATCGACATACATCGGAA+TGG + chr3_4:68730990-68731009 Msa0517240:three_prime_UTR 45.0%
GGGATTATACACTCAGGACA+AGG - chr3_4:68731043-68731062 None:intergenic 45.0%
!!! TAAAATTAATTTAACATTTT+GGG - chr3_4:68729884-68729903 None:intergenic 5.0%
!!! ATAAAATTAATTTAACATTT+TGG - chr3_4:68729885-68729904 None:intergenic 5.0%
GACCCGATCGACACCAAAAA+TGG - chr3_4:68726523-68726542 None:intergenic 50.0%
CGATCTGTGATAGAACTCGC+CGG - chr3_4:68726568-68726587 None:intergenic 50.0%
CGGCGAGTTCTATCACAGAT+CGG + chr3_4:68726566-68726585 Msa0517240:five_prime_UTR 50.0%
!! GAGGAAGAGTTGGTGGAGTT+GGG - chr3_4:68726640-68726659 None:intergenic 50.0%
AAGAGTGGTGAAGTGGAGGA+GGG - chr3_4:68726686-68726705 None:intergenic 50.0%
! ATGGATTTAGGGTGGGGTGT+GGG - chr3_4:68726720-68726739 None:intergenic 50.0%
! GAGAGGATGGATTTAGGGTG+GGG - chr3_4:68726726-68726745 None:intergenic 50.0%
ATGGAGGAAGGAAGAGAGGA+TGG - chr3_4:68726739-68726758 None:intergenic 50.0%
GTGAATGGAGGAAGGAAGAG+AGG - chr3_4:68726743-68726762 None:intergenic 50.0%
AATTGGGGGTGAATGGAGGA+AGG - chr3_4:68726751-68726770 None:intergenic 50.0%
GGAAAATTGGGGGTGAATGG+AGG - chr3_4:68726755-68726774 None:intergenic 50.0%
GGTGGAAAATTGGGGGTGAA+TGG - chr3_4:68726758-68726777 None:intergenic 50.0%
ACTGGGAGGGTGGAAAATTG+GGG - chr3_4:68726766-68726785 None:intergenic 50.0%
GACTGGGAGGGTGGAAAATT+GGG - chr3_4:68726767-68726786 None:intergenic 50.0%
CTGAAAACGCCGATACGACT+GGG - chr3_4:68726783-68726802 None:intergenic 50.0%
TCTGAAAACGCCGATACGAC+TGG - chr3_4:68726784-68726803 None:intergenic 50.0%
TCAAAGCCACCACTGAACCT+CGG + chr3_4:68726816-68726835 Msa0517240:CDS 50.0%
TTGAAACCGAGGTTCAGTGG+TGG - chr3_4:68726825-68726844 None:intergenic 50.0%
ACCACTGAACCTCGGTTTCA+AGG + chr3_4:68726824-68726843 Msa0517240:CDS 50.0%
GTTGCAAAACCATGGCCTCA+CGG - chr3_4:68726905-68726924 None:intergenic 50.0%
!! GGCCATGGTTTTGCAACTTG+AGG + chr3_4:68726908-68726927 Msa0517240:CDS 50.0%
! TAGTCATACAGCCGCTGGTT+TGG - chr3_4:68727854-68727873 None:intergenic 50.0%
GGTTGATTGTGTGCCTTGAG+CGG - chr3_4:68728053-68728072 None:intergenic 50.0%
AGAGCCTATGTGATGTCAGG+GGG + chr3_4:68728165-68728184 Msa0517240:CDS 50.0%
!! GCGCGTCCATTTTTAAAGGG+CGG + chr3_4:68728796-68728815 Msa0517240:intron 50.0%
CCATGTCAGCAGCAATGACA+GGG - chr3_4:68729048-68729067 None:intergenic 50.0%
CCTGTCATTGCTGCTGACAT+GGG + chr3_4:68729046-68729065 Msa0517240:intron 50.0%
! ACTTCAGCACAAGGCCTTGT+AGG - chr3_4:68729173-68729192 None:intergenic 50.0%
! TTCATTTGAGATACCGGGGG+GGG + chr3_4:68729200-68729219 Msa0517240:intron 50.0%
!! ACCGGACAACGATTTGGTGA+GGG + chr3_4:68729373-68729392 Msa0517240:intron 50.0%
ACCCTCACCAAATCGTTGTC+CGG - chr3_4:68729377-68729396 None:intergenic 50.0%
TCACACATGCAGAGGAAGAG+AGG - chr3_4:68730364-68730383 None:intergenic 50.0%
GTTGATGTTCCCATGGCTTC+TGG + chr3_4:68730569-68730588 Msa0517240:CDS 50.0%
!! AAAGAGTACACGGTTGGTGG+GGG + chr3_4:68730626-68730645 Msa0517240:CDS 50.0%
AGACCCTGTGGTGAAAGCAA+TGG + chr3_4:68730667-68730686 Msa0517240:CDS 50.0%
CTGCCATTGCTTTCACCACA+GGG - chr3_4:68730673-68730692 None:intergenic 50.0%
! AACCTCCTGACGCTCTCTTT+TGG - chr3_4:68730744-68730763 None:intergenic 50.0%
! GGAATGGACTCAGCGTTTGT+TGG + chr3_4:68731006-68731025 Msa0517240:three_prime_UTR 50.0%
GCCCAATGTCAAGGACTGAT+TGG + chr3_4:68731110-68731129 Msa0517240:three_prime_UTR 50.0%
!! GGAGGAAGAGTTGGTGGAGT+TGG - chr3_4:68726641-68726660 None:intergenic 55.0%
AGAGTGGTGAAGTGGAGGAG+GGG - chr3_4:68726685-68726704 None:intergenic 55.0%
GAAGAGTGGTGAAGTGGAGG+AGG - chr3_4:68726687-68726706 None:intergenic 55.0%
! GATGGATTTAGGGTGGGGTG+TGG - chr3_4:68726721-68726740 None:intergenic 55.0%
CTGGGAGGGTGGAAAATTGG+GGG - chr3_4:68726765-68726784 None:intergenic 55.0%
CGACTGGGAGGGTGGAAAAT+TGG - chr3_4:68726768-68726787 None:intergenic 55.0%
TTCCACCCTCCCAGTCGTAT+CGG + chr3_4:68726771-68726790 Msa0517240:CDS 55.0%
AAACGCCGATACGACTGGGA+GGG - chr3_4:68726779-68726798 None:intergenic 55.0%
AAAACGCCGATACGACTGGG+AGG - chr3_4:68726780-68726799 None:intergenic 55.0%
GCCTTGAAACCGAGGTTCAG+TGG - chr3_4:68726828-68726847 None:intergenic 55.0%
!! CCTTCTTGGCCTTGAAACCG+AGG - chr3_4:68726836-68726855 None:intergenic 55.0%
CCTCGGTTTCAAGGCCAAGA+AGG + chr3_4:68726833-68726852 Msa0517240:CDS 55.0%
CCCTGTCATTGCTGCTGACA+TGG + chr3_4:68729045-68729064 Msa0517240:intron 55.0%
CCCATGTCAGCAGCAATGAC+AGG - chr3_4:68729049-68729068 None:intergenic 55.0%
! AGCACAAGGCCTTGTAGGCA+TGG - chr3_4:68729168-68729187 None:intergenic 55.0%
! TCATTTGAGATACCGGGGGG+GGG + chr3_4:68729201-68729220 Msa0517240:intron 55.0%
ACTCGGACCGGACAACGATT+TGG + chr3_4:68729367-68729386 Msa0517240:intron 55.0%
!! GACCGGACAACGATTTGGTG+AGG + chr3_4:68729372-68729391 Msa0517240:intron 55.0%
ATGCAGAGGAAGAGAGGAGG+AGG - chr3_4:68730358-68730377 None:intergenic 55.0%
CACATGCAGAGGAAGAGAGG+AGG - chr3_4:68730361-68730380 None:intergenic 55.0%
GCTAGCCGTTGATGTTCCCA+TGG + chr3_4:68730562-68730581 Msa0517240:CDS 55.0%
GCTGCCATTGCTTTCACCAC+AGG - chr3_4:68730674-68730693 None:intergenic 55.0%
!! GGATGCCAAAAGAGAGCGTC+AGG + chr3_4:68730736-68730755 Msa0517240:CDS 55.0%
!! TGCCAAAAGAGAGCGTCAGG+AGG + chr3_4:68730739-68730758 Msa0517240:CDS 55.0%
TGGGCGAATGCCCAATGTCA+AGG + chr3_4:68731101-68731120 Msa0517240:three_prime_UTR 55.0%
!! AAGGGTGGCGGAGGAAGAGT+TGG - chr3_4:68726650-68726669 None:intergenic 60.0%
GTGCGGAAGTGAAAGGGTGG+CGG - chr3_4:68726662-68726681 None:intergenic 60.0%
! GAGGGGGTGCGGAAGTGAAA+GGG - chr3_4:68726668-68726687 None:intergenic 60.0%
GAGTGGTGAAGTGGAGGAGG+GGG - chr3_4:68726684-68726703 None:intergenic 60.0%
TCTGGAGAAACCTACGGCCG+CGG + chr3_4:68726857-68726876 Msa0517240:CDS 60.0%
CGTGAAAGCAGAGGTCACCG+CGG - chr3_4:68726877-68726896 None:intergenic 60.0%
CGGTGACCTCTGCTTTCACG+CGG + chr3_4:68726877-68726896 Msa0517240:CDS 60.0%
ACGGTACCGCGTGAAAGCAG+AGG - chr3_4:68726886-68726905 None:intergenic 60.0%
TGCTTTCACGCGGTACCGTG+AGG + chr3_4:68726887-68726906 Msa0517240:CDS 60.0%
GCCTATGTGATGTCAGGGGG+TGG + chr3_4:68728168-68728187 Msa0517240:CDS 60.0%
GCCACCCCCTGACATCACAT+AGG - chr3_4:68728172-68728191 None:intergenic 60.0%
! CATTTGAGATACCGGGGGGG+GGG + chr3_4:68729202-68729221 Msa0517240:intron 60.0%
! ATTTGAGATACCGGGGGGGG+GGG + chr3_4:68729203-68729222 Msa0517240:intron 60.0%
TGGTCTGGGCCAGAAGCCAT+GGG - chr3_4:68730581-68730600 None:intergenic 60.0%
!! GGTGGCGGAGGAAGAGTTGG+TGG - chr3_4:68726647-68726666 None:intergenic 65.0%
! CGGAAGTGAAAGGGTGGCGG+AGG - chr3_4:68726659-68726678 None:intergenic 65.0%
GGGGTGCGGAAGTGAAAGGG+TGG - chr3_4:68726665-68726684 None:intergenic 65.0%
! GGAGGGGGTGCGGAAGTGAA+AGG - chr3_4:68726669-68726688 None:intergenic 65.0%
GTGAAGTGGAGGAGGGGGTG+CGG - chr3_4:68726679-68726698 None:intergenic 65.0%
GTTATGGGCGCCCCCCTTAC+AGG + chr3_4:68728132-68728151 Msa0517240:CDS 65.0%
! TTTGAGATACCGGGGGGGGG+GGG + chr3_4:68729204-68729223 Msa0517240:intron 65.0%
CTGGTCTGGGCCAGAAGCCA+TGG - chr3_4:68730582-68730601 None:intergenic 65.0%
TGCGTTGCGTTGCGCTGCGC+AGG - chr3_4:68726463-68726482 None:intergenic 70.0%
CGCCGATACGACTGGGAGGG+TGG - chr3_4:68726776-68726795 None:intergenic 70.0%
CACGCGGTACCGTGAGGCCA+TGG + chr3_4:68726893-68726912 Msa0517240:CDS 70.0%
TTGAGATACCGGGGGGGGGG+GGG + chr3_4:68729205-68729224 Msa0517240:intron 70.0%
GCAGAGGTCACCGCGGCCGT+AGG - chr3_4:68726870-68726889 None:intergenic 75.0%
TGAAGAGTCCCCCCCCCCCC+CGG - chr3_4:68729216-68729235 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 68726415 68731149 68726415 ID=Msa0517240;Name=Msa0517240
chr3_4 mRNA 68726415 68731149 68726415 ID=Msa0517240-mRNA-1;Parent=Msa0517240;Name=Msa0517240-mRNA-1;_AED=0.01;_eAED=0.01;_QI=176|1|1|1|1|1|3|329|350
chr3_4 exon 68726415 68727097 68726415 ID=Msa0517240-mRNA-1:exon:18207;Parent=Msa0517240-mRNA-1
chr3_4 exon 68728039 68728311 68728039 ID=Msa0517240-mRNA-1:exon:18208;Parent=Msa0517240-mRNA-1
chr3_4 exon 68730548 68731149 68730548 ID=Msa0517240-mRNA-1:exon:18209;Parent=Msa0517240-mRNA-1
chr3_4 five_prime_UTR 68726415 68726590 68726415 ID=Msa0517240-mRNA-1:five_prime_utr;Parent=Msa0517240-mRNA-1
chr3_4 CDS 68726591 68727097 68726591 ID=Msa0517240-mRNA-1:cds;Parent=Msa0517240-mRNA-1
chr3_4 CDS 68728039 68728311 68728039 ID=Msa0517240-mRNA-1:cds;Parent=Msa0517240-mRNA-1
chr3_4 CDS 68730548 68730820 68730548 ID=Msa0517240-mRNA-1:cds;Parent=Msa0517240-mRNA-1
chr3_4 three_prime_UTR 68730821 68731149 68730821 ID=Msa0517240-mRNA-1:three_prime_utr;Parent=Msa0517240-mRNA-1
Gene Sequence

>Msa0517240

ATGCAAATGTCAAGAACAAAATGCGGTGGTTGTTCACAACGAATCACCCAACTCCACCAACTCTTCCTCCGCCACCCTTTCACTTCCGCACCCCCTCCTCCACTTCACCACTCTTCAAAATTACTACCCACACCCCACCCTAAATCCATCCTCTCTTCCTTCCTCCATTCACCCCCAATTTTCCACCCTCCCAGTCGTATCGGCGTTTTCAGATTCTTCTCTTCTTCAAAGCCACCACTGAACCTCGGTTTCAAGGCCAAGAAGGTTCTGGAGAAACCTACGGCCGCGGTGACCTCTGCTTTCACGCGGTACCGTGAGGCCATGGTTTTGCAACTTGAGGCTTTCTTCAAAAGGAATAACCTTTTTCTGTTTGGTGCTGCTGGGGTTGTTCTTTGTGCTATTCTTTGGAGGATTATGTTTGGTATTGCTAATACTTTTGTTGTTCTTTCTGAAGGCATGGCTAAGTATGGTTTCTTATCCCTTTCTGCTGCTATTGTTGCTTTTACTGGTTTGTATATCCGCTCAAGGCACACAATCAACCCTGATAAAGTTTATAGAATGGCCATGACAAGACTTAACACATCTGCTCAGATTCTTGAAGTTATGGGCGCCCCCCTTACAGGAACTGATTTAAGAGCCTATGTGATGTCAGGGGGTGGCCTTACGTTAAAGAAAATCAAGCCAAGTCTTAGGAGCAAACGTTGTTTTCTCATTTTCCCCATAAAAGGTTCTGAGAGAAAGGGTCTAGTGAATGTTGAAGTCAAGAAAAAACAGGGCAAGTATGATATGAAGCTGCTAGCCGTTGATGTTCCCATGGCTTCTGGCCCAGACCAGCGTTTGTATCTGATTGGAAATGAAAAAGAGTACACGGTTGGTGGGGGACTGATATCTGATCTAAGAGACCCTGTGGTGAAAGCAATGGCAGCAACCAAAGAATTTGATGATCTTGATGAGATTGAGGATGAGGAGGATGCCAAAAGAGAGCGTCAGGAGGTTGAACGAAAGCATCGAGAAGAAGTTGAGAAGGTTGAAAATAGTGGTACCAAGCAATAA
Protein sequence

>Msa0517240

MQMSRTKCGGCSQRITQLHQLFLRHPFTSAPPPPLHHSSKLLPTPHPKSILSSFLHSPPIFHPPSRIGVFRFFSSSKPPLNLGFKAKKVLEKPTAAVTSAFTRYREAMVLQLEAFFKRNNLFLFGAAGVVLCAILWRIMFGIANTFVVLSEGMAKYGFLSLSAAIVAFTGLYIRSRHTINPDKVYRMAMTRLNTSAQILEVMGAPLTGTDLRAYVMSGGGLTLKKIKPSLRSKRCFLIFPIKGSERKGLVNVEVKKKQGKYDMKLLAVDVPMASGPDQRLYLIGNEKEYTVGGGLISDLRDPVVKAMAATKEFDDLDEIEDEEDAKRERQEVERKHREEVEKVENSGTKQ*