AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1393770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1393770 MtrunA17_Chr3g0128541 97.429 350 8 1 1 350 1 349 0.0 701
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1393770 AT2G40800.1 62.391 343 117 3 12 348 41 377 2.40e-141 405
Msa1393770 AT3G56430.1 57.143 364 121 4 12 344 74 433 4.35e-137 397
Msa1393770 AT2G40800.2 56.471 255 99 3 12 260 41 289 3.00e-92 278

Find 132 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATTCTATAAACTTTATC+AGG 0.141587 tig0021758:-89655 None:intergenic
AAGGAAGAGAGGATGGATTT+AGG 0.151084 tig0021758:-88312 None:intergenic
CGACTGGGAGGGTGGAAAAT+TGG 0.172637 tig0021758:-88348 None:intergenic
TTTCTTCTCTTGTTGATTAC+AGG 0.201817 tig0021758:+92430 Msa1393770:three_prime_UTR
AGGAAGAGAGGATGGATTTA+GGG 0.234938 tig0021758:-88311 None:intergenic
TTGTTCTTTGTGCTATTCTT+TGG 0.247047 tig0021758:+88559 Msa1393770:CDS
GACTGGGAGGGTGGAAAATT+GGG 0.256416 tig0021758:-88347 None:intergenic
ATCAAGATCATCAAATTCTT+TGG 0.261593 tig0021758:-92284 None:intergenic
GTTGATGTTCCCATGGCTTC+TGG 0.275349 tig0021758:+92157 Msa1393770:CDS
CAGCAGCACCAAACAGAAAA+AGG 0.308344 tig0021758:-88533 None:intergenic
TCTGAAGGCATGGCTAAGTA+TGG 0.317661 tig0021758:+88621 Msa1393770:CDS
AACCTCCTGACGCTCTCTTT+TGG 0.326013 tig0021758:-92329 None:intergenic
AATCATTGATGTTTCTCTTC+CGG 0.333322 tig0021758:+92407 Msa1393770:exon
ATCAGATACAAACGCTGGTC+TGG 0.340990 tig0021758:-92181 None:intergenic
TGCTCAGATTCTTGAAGTTA+TGG 0.348723 tig0021758:+89699 Msa1393770:CDS
AGAAAATCAAGCCAAGTCTT+AGG 0.350882 tig0021758:+89785 Msa1393770:CDS
GGAGGAAGAGTTGGTGGAGT+TGG 0.355408 tig0021758:-88221 None:intergenic
TTTCAAGGCCAAGAAGGTTC+TGG 0.364522 tig0021758:+88422 Msa1393770:CDS
AGGTTTCTCCAGAACCTTCT+TGG 0.366103 tig0021758:-88430 None:intergenic
ATTCTTTGGAGGATTATGTT+TGG 0.371669 tig0021758:+88573 Msa1393770:CDS
GCTCAGATTCTTGAAGTTAT+GGG 0.387775 tig0021758:+89700 Msa1393770:CDS
GAGGAAGAGTTGGTGGAGTT+GGG 0.388624 tig0021758:-88220 None:intergenic
GAAGAGTGGTGAAGTGGAGG+AGG 0.390340 tig0021758:-88267 None:intergenic
TCCAATCAGTCCTTGACATT+GGG 0.399769 tig0021758:-92699 None:intergenic
TTCTTTGTGCTATTCTTTGG+AGG 0.401581 tig0021758:+88562 Msa1393770:CDS
GATGGATTTAGGGTGGGGTG+TGG 0.403426 tig0021758:-88301 None:intergenic
GACCAGCGTTTGTATCTGAT+TGG 0.406586 tig0021758:+92184 Msa1393770:CDS
GGATGCCAAAAGAGAGCGTC+AGG 0.410942 tig0021758:+92324 Msa1393770:CDS
TCTGAAAACGCCGATACGAC+TGG 0.413528 tig0021758:-88364 None:intergenic
TGCGTTGCGTTGCGCTGCGC+AGG 0.415895 tig0021758:-88043 None:intergenic
AACTTGAGGCTTTCTTCAAA+AGG 0.425511 tig0021758:+88505 Msa1393770:CDS
CTCTTAAATCAGTTCCTGTA+AGG 0.432262 tig0021758:-89729 None:intergenic
ACTGGGAGGGTGGAAAATTG+GGG 0.435232 tig0021758:-88346 None:intergenic
GCCCAATGTCAAGGACTGAT+TGG 0.444990 tig0021758:+92698 Msa1393770:three_prime_UTR
GCTGCCATTGCTTTCACCAC+AGG 0.445208 tig0021758:-92259 None:intergenic
CTAGCAAGCAATAATAATCA+TGG 0.445372 tig0021758:+92669 Msa1393770:three_prime_UTR
GTTGAGAAGGTTGAAAATAG+TGG 0.449934 tig0021758:+92373 Msa1393770:CDS
CATAAAAGGTTCTGAGAGAA+AGG 0.450312 tig0021758:+89834 Msa1393770:CDS
AGCAACAATAGCAGCAGAAA+GGG 0.450974 tig0021758:-88652 None:intergenic
ATGGATTTAGGGTGGGGTGT+GGG 0.454697 tig0021758:-88300 None:intergenic
TTAAGAGCCTATGTGATGTC+AGG 0.454783 tig0021758:+89745 Msa1393770:CDS
CTGCCATTGCTTTCACCACA+GGG 0.455409 tig0021758:-92258 None:intergenic
AAGAGTGGTGAAGTGGAGGA+GGG 0.455436 tig0021758:-88266 None:intergenic
TGTTGTTCTTTCTGAAGGCA+TGG 0.459160 tig0021758:+88611 Msa1393770:CDS
GGTGGCGGAGGAAGAGTTGG+TGG 0.460218 tig0021758:-88227 None:intergenic
GTGCGGAAGTGAAAGGGTGG+CGG 0.461090 tig0021758:-88242 None:intergenic
CGGAAGTGAAAGGGTGGCGG+AGG 0.461997 tig0021758:-88239 None:intergenic
ACCACTGAACCTCGGTTTCA+AGG 0.465783 tig0021758:+88407 Msa1393770:CDS
CAACGTTTGCTCCTAAGACT+TGG 0.466386 tig0021758:-89796 None:intergenic
ATGGAGGAAGGAAGAGAGGA+TGG 0.475280 tig0021758:-88319 None:intergenic
CTGGTCTGGGCCAGAAGCCA+TGG 0.478808 tig0021758:-92167 None:intergenic
TTTGAAGAGTGGTGAAGTGG+AGG 0.482982 tig0021758:-88270 None:intergenic
GAGTGGTGAAGTGGAGGAGG+GGG 0.485967 tig0021758:-88264 None:intergenic
GTGAATGGAGGAAGGAAGAG+AGG 0.491713 tig0021758:-88323 None:intergenic
ATCCAATCAGTCCTTGACAT+TGG 0.492594 tig0021758:-92700 None:intergenic
TCAGATACAAACGCTGGTCT+GGG 0.495241 tig0021758:-92180 None:intergenic
TGATGATCTTGATGAGATTG+AGG 0.500289 tig0021758:+92294 Msa1393770:CDS
CTTAAATCAGTTCCTGTAAG+GGG 0.502763 tig0021758:-89727 None:intergenic
AGAGAGGATGGATTTAGGGT+GGG 0.506943 tig0021758:-88307 None:intergenic
CACGCGGTACCGTGAGGCCA+TGG 0.508270 tig0021758:+88476 Msa1393770:CDS
CCTCGGTTTCAAGGCCAAGA+AGG 0.508496 tig0021758:+88416 Msa1393770:CDS
CCGACCGTTATTTCAATCTC+CGG 0.517253 tig0021758:+88129 Msa1393770:five_prime_UTR
GGAATGGACTCAGCGTTTGT+TGG 0.519014 tig0021758:+92594 Msa1393770:three_prime_UTR
TCTTGATGAGATTGAGGATG+AGG 0.521181 tig0021758:+92300 Msa1393770:CDS
AAGGGTGGCGGAGGAAGAGT+TGG 0.521568 tig0021758:-88230 None:intergenic
AAACATCAATGATTATTGCT+TGG 0.522621 tig0021758:-92398 None:intergenic
CCCTGATAAAGTTTATAGAA+TGG 0.526896 tig0021758:+89654 Msa1393770:CDS
TTCCACCCTCCCAGTCGTAT+CGG 0.529276 tig0021758:+88354 Msa1393770:CDS
CTCGCCGGAGATTGAAATAA+CGG 0.529512 tig0021758:-88133 None:intergenic
AAGAGAGGATGGATTTAGGG+TGG 0.531745 tig0021758:-88308 None:intergenic
TAATCAACAAGAGAAGAAAC+CGG 0.534708 tig0021758:-92426 None:intergenic
CTGGGAGGGTGGAAAATTGG+GGG 0.535393 tig0021758:-88345 None:intergenic
AGAGTGGTGAAGTGGAGGAG+GGG 0.535576 tig0021758:-88265 None:intergenic
CCATTCTATAAACTTTATCA+GGG 0.535969 tig0021758:-89654 None:intergenic
AAGCAACAATAGCAGCAGAA+AGG 0.536715 tig0021758:-88653 None:intergenic
GCATCGAGAAGAAGTTGAGA+AGG 0.537185 tig0021758:+92360 Msa1393770:CDS
TAGTTAACCACATCATAGAC+AGG 0.537406 tig0021758:-92649 None:intergenic
CTGAAAACGCCGATACGACT+GGG 0.540096 tig0021758:-88363 None:intergenic
CCTTCTTGGCCTTGAAACCG+AGG 0.540343 tig0021758:-88416 None:intergenic
CGCCGATACGACTGGGAGGG+TGG 0.545100 tig0021758:-88356 None:intergenic
GGGGTGCGGAAGTGAAAGGG+TGG 0.550967 tig0021758:-88245 None:intergenic
TCTGGAGAAACCTACGGCCG+CGG 0.555143 tig0021758:+88440 Msa1393770:CDS
GAGAGGATGGATTTAGGGTG+GGG 0.563342 tig0021758:-88306 None:intergenic
TAGCAAGCAATAATAATCAT+GGG 0.565605 tig0021758:+92670 Msa1393770:three_prime_UTR
GCTAGCCGTTGATGTTCCCA+TGG 0.565913 tig0021758:+92150 Msa1393770:CDS
AGGGTTTGTATATCCGCTCA+AGG 0.566257 tig0021758:+89620 Msa1393770:intron
TCTTAAATCAGTTCCTGTAA+GGG 0.573835 tig0021758:-89728 None:intergenic
TGGTCTGGGCCAGAAGCCAT+GGG 0.574055 tig0021758:-92166 None:intergenic
AAAAGAGTACACGGTTGGTG+GGG 0.574607 tig0021758:+92213 Msa1393770:CDS
GCCTTGAAACCGAGGTTCAG+TGG 0.579549 tig0021758:-88408 None:intergenic
TAAGAGCCTATGTGATGTCA+GGG 0.580638 tig0021758:+89746 Msa1393770:CDS
ATAAAAGGTTCTGAGAGAAA+GGG 0.581290 tig0021758:+89835 Msa1393770:CDS
TTAATTGTGTGGCATTGTAG+TGG 0.583194 tig0021758:-88067 None:intergenic
GCAGAGGTCACCGCGGCCGT+AGG 0.586798 tig0021758:-88450 None:intergenic
TGATGAGATTGAGGATGAGG+AGG 0.589562 tig0021758:+92303 Msa1393770:CDS
TTAAATCAGTTCCTGTAAGG+GGG 0.593454 tig0021758:-89726 None:intergenic
TCAAAGCCACCACTGAACCT+CGG 0.600013 tig0021758:+88399 Msa1393770:CDS
TGGGCGAATGCCCAATGTCA+AGG 0.601394 tig0021758:+92689 Msa1393770:three_prime_UTR
AAAGAGTACACGGTTGGTGG+GGG 0.602508 tig0021758:+92214 Msa1393770:CDS
AGATGTGTTAAGTCTTGTCA+TGG 0.606087 tig0021758:-89677 None:intergenic
CAGCAATTTGTGTTACAACA+AGG 0.606939 tig0021758:-92517 None:intergenic
GACATCGACATACATCGGAA+TGG 0.612256 tig0021758:+92578 Msa1393770:three_prime_UTR
AGCCTCAAGTTGCAAAACCA+TGG 0.612564 tig0021758:-88493 None:intergenic
AGAAGCCATGGGAACATCAA+CGG 0.616261 tig0021758:-92155 None:intergenic
GAAGGTTCTGGAGAAACCTA+CGG 0.620194 tig0021758:+88434 Msa1393770:CDS
CGGCGAGTTCTATCACAGAT+CGG 0.630911 tig0021758:+88149 Msa1393770:five_prime_UTR
GTTGCAAAACCATGGCCTCA+CGG 0.632840 tig0021758:-88485 None:intergenic
GGGATTATACACTCAGGACA+AGG 0.634623 tig0021758:-92628 None:intergenic
TGACAGACATCGACATACAT+CGG 0.637549 tig0021758:+92573 Msa1393770:three_prime_UTR
TGCTTTCACGCGGTACCGTG+AGG 0.638373 tig0021758:+88470 Msa1393770:CDS
TAAATCAGTTCCTGTAAGGG+GGG 0.651045 tig0021758:-89725 None:intergenic
TAATTGAACTGTTAATTGTG+TGG 0.651478 tig0021758:-88078 None:intergenic
TGCCAAAAGAGAGCGTCAGG+AGG 0.651941 tig0021758:+92327 Msa1393770:CDS
AGACCCTGTGGTGAAAGCAA+TGG 0.653556 tig0021758:+92255 Msa1393770:CDS
GGTTGATTGTGTGCCTTGAG+CGG 0.654227 tig0021758:-89633 None:intergenic
CGATCTGTGATAGAACTCGC+CGG 0.654965 tig0021758:-88148 None:intergenic
ATGTCAAGAACAAAATGCGG+TGG 0.658750 tig0021758:+88180 Msa1393770:CDS
CCGGAGATTGAAATAACGGT+CGG 0.659048 tig0021758:-88129 None:intergenic
ACGGTACCGCGTGAAAGCAG+AGG 0.660527 tig0021758:-88466 None:intergenic
AAACGCCGATACGACTGGGA+GGG 0.661669 tig0021758:-88359 None:intergenic
TTGAAACCGAGGTTCAGTGG+TGG 0.661963 tig0021758:-88405 None:intergenic
AGAGCCTATGTGATGTCAGG+GGG 0.670155 tig0021758:+89748 Msa1393770:CDS
AAGAGCCTATGTGATGTCAG+GGG 0.683418 tig0021758:+89747 Msa1393770:CDS
CAAATGTCAAGAACAAAATG+CGG 0.685833 tig0021758:+88177 Msa1393770:CDS
CGGTGACCTCTGCTTTCACG+CGG 0.689212 tig0021758:+88460 Msa1393770:CDS
TAGACAGGGATTATACACTC+AGG 0.691775 tig0021758:-92634 None:intergenic
TTCCAATCAGATACAAACGC+TGG 0.692801 tig0021758:-92186 None:intergenic
AGTTAACCACATCATAGACA+GGG 0.700668 tig0021758:-92648 None:intergenic
TATAATCCCTGTCTATGATG+TGG 0.702245 tig0021758:+92642 Msa1393770:three_prime_UTR
ATCTGATCTAAGAGACCCTG+TGG 0.712384 tig0021758:+92243 Msa1393770:CDS
AAAACGCCGATACGACTGGG+AGG 0.714464 tig0021758:-88360 None:intergenic
CGTGAAAGCAGAGGTCACCG+CGG 0.795470 tig0021758:-88457 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTAACATCTTTTA+AGG + tig0021758:89600-89619 Msa1393770:intron 10.0%
!!! TTATTTTTAACATCTTTTAA+GGG + tig0021758:89601-89620 Msa1393770:intron 10.0%
!!! ATATTATTAATTTTGTTAAG+TGG - tig0021758:91199-91218 None:intergenic 10.0%
!!! AGTAAATTTTGTAATTTTAT+TGG + tig0021758:91220-91239 Msa1393770:intron 10.0%
!!! TAAAAAACAAAATTTTAAAC+TGG + tig0021758:91300-91319 Msa1393770:intron 10.0%
!!! AAAATTAATTTAACATTTTG+GGG - tig0021758:91471-91490 None:intergenic 10.0%
!! AACTTTATTGTATGAATAAA+TGG - tig0021758:91032-91051 None:intergenic 15.0%
!!! TTTATGATTTTTTTTAAGTG+TGG - tig0021758:91055-91074 None:intergenic 15.0%
!!! GTTTTATGAATTGTATAAAT+AGG + tig0021758:91667-91686 Msa1393770:intron 15.0%
!! TCATAATCTATAATCAAAAC+TGG - tig0021758:88814-88833 None:intergenic 20.0%
!! AAAGATTTCATAAGTTATCT+CGG + tig0021758:88950-88969 Msa1393770:intron 20.0%
!!! TCTTATTTAAACTAATCTAC+TGG - tig0021758:89073-89092 None:intergenic 20.0%
!!! AACAGTGTTTTTTTTAGATT+GGG + tig0021758:89488-89507 Msa1393770:intron 20.0%
!! ATTAATGATATAAACAAGAG+GGG - tig0021758:89909-89928 None:intergenic 20.0%
!! GATTAATGATATAAACAAGA+GGG - tig0021758:89910-89929 None:intergenic 20.0%
!!! ATATTAGGTATGTTTTCATT+TGG - tig0021758:90329-90348 None:intergenic 20.0%
!! GTAAAATCTATAGATTGATA+TGG + tig0021758:90422-90441 Msa1393770:intron 20.0%
!! ATTGTATAAATAGGAAGTTA+TGG + tig0021758:91676-91695 Msa1393770:intron 20.0%
!!! GTTAATTTGGAATAATGATA+GGG + tig0021758:91716-91735 Msa1393770:intron 20.0%
!! TGTGATATAAGTTAAAACAT+AGG + tig0021758:91967-91986 Msa1393770:intron 20.0%
!! AATTTTCTTGTAGAGAAAGA+AGG + tig0021758:87999-88018 Msa1393770:five_prime_UTR 25.0%
! TAATTGAACTGTTAATTGTG+TGG - tig0021758:88081-88100 None:intergenic 25.0%
!! TGCAAAATTTTATGTGCATT+AGG + tig0021758:88720-88739 Msa1393770:intron 25.0%
!! TTATTGATTATGATCCTGTT+TGG + tig0021758:88760-88779 Msa1393770:intron 25.0%
! AACTTAACAATGCTATATAC+TGG + tig0021758:88850-88869 Msa1393770:intron 25.0%
! ATGAGAATTATGATTCTGTT+TGG + tig0021758:89128-89147 Msa1393770:intron 25.0%
! TAGCTTATACATTATGTACA+AGG - tig0021758:89231-89250 None:intergenic 25.0%
! TTTCAAAGAGCTTATGAAAA+CGG - tig0021758:89369-89388 None:intergenic 25.0%
!! TCTTATTTGAACTAATCTAC+TGG - tig0021758:89412-89431 None:intergenic 25.0%
!!! CAACAGTGTTTTTTTTAGAT+TGG + tig0021758:89487-89506 Msa1393770:intron 25.0%
! CCATTCTATAAACTTTATCA+GGG - tig0021758:89657-89676 None:intergenic 25.0%
! CGATTAATGATATAAACAAG+AGG - tig0021758:89911-89930 None:intergenic 25.0%
! TAAGACAAACAAATTCTATC+AGG - tig0021758:89934-89953 None:intergenic 25.0%
! TAGTAGAATTTGATGCAAAA+TGG - tig0021758:90008-90027 None:intergenic 25.0%
! GAATTATGAAGACATAATTC+TGG - tig0021758:90163-90182 None:intergenic 25.0%
! TTGAATGCTTACTATATCTT+CGG - tig0021758:90245-90264 None:intergenic 25.0%
! GATATAGTAAGCATTCAAAT+CGG + tig0021758:90247-90266 Msa1393770:intron 25.0%
!! AGCGTAATGCTTATATTTTA+AGG + tig0021758:90599-90618 Msa1393770:intron 25.0%
!!! GTAATGCTTATATTTTAAGG+AGG + tig0021758:90602-90621 Msa1393770:intron 25.0%
!! AGATTATATGTAGAGTGTTT+AGG - tig0021758:91533-91552 None:intergenic 25.0%
! AGCTCGGTAATTTATTATTA+AGG + tig0021758:91570-91589 Msa1393770:intron 25.0%
! TCGGTAATTTATTATTAAGG+AGG + tig0021758:91573-91592 Msa1393770:intron 25.0%
! TAAATAGGAAGTTATGGAAA+AGG + tig0021758:91682-91701 Msa1393770:intron 25.0%
! AAATAGGAAGTTATGGAAAA+GGG + tig0021758:91683-91702 Msa1393770:intron 25.0%
!! GGTTAATTTGGAATAATGAT+AGG + tig0021758:91715-91734 Msa1393770:intron 25.0%
! ATCAAGATCATCAAATTCTT+TGG - tig0021758:92287-92306 None:intergenic 25.0%
! AAACATCAATGATTATTGCT+TGG - tig0021758:92401-92420 None:intergenic 25.0%
! CCTTAGAAAAAAACTCAAAT+TGG - tig0021758:92489-92508 None:intergenic 25.0%
!!! CCAATTTGAGTTTTTTTCTA+AGG + tig0021758:92486-92505 Msa1393770:three_prime_UTR 25.0%
! TAGCAAGCAATAATAATCAT+GGG + tig0021758:92670-92689 Msa1393770:three_prime_UTR 25.0%
! CAGTTCAATTAGTCCATTTT+TGG + tig0021758:88090-88109 Msa1393770:five_prime_UTR 30.0%
CAAATGTCAAGAACAAAATG+CGG + tig0021758:88177-88196 Msa1393770:CDS 30.0%
! AGGAATAACCTTTTTCTGTT+TGG + tig0021758:88525-88544 Msa1393770:CDS 30.0%
! TTGTTCTTTGTGCTATTCTT+TGG + tig0021758:88559-88578 Msa1393770:CDS 30.0%
! ATTCTTTGGAGGATTATGTT+TGG + tig0021758:88573-88592 Msa1393770:CDS 30.0%
!!! ACTTTTGTTGTTCTTTCTGA+AGG + tig0021758:88606-88625 Msa1393770:CDS 30.0%
ATTAAGCTGTTTATCCAAAC+AGG - tig0021758:88777-88796 None:intergenic 30.0%
TTATAGATTATGACCCTGTT+TGG + tig0021758:88821-88840 Msa1393770:intron 30.0%
! TTAAGTTGCTTATCCAAACA+GGG - tig0021758:88837-88856 None:intergenic 30.0%
!! TATATACTGGTTCTGATCAT+AGG + tig0021758:88863-88882 Msa1393770:intron 30.0%
AATAAGCTGAAAACAGCTTA+TGG + tig0021758:88985-89004 Msa1393770:intron 30.0%
ATAGAGAATTAGAGATGGTT+TGG - tig0021758:89100-89119 None:intergenic 30.0%
ATGTCATAGAGAATTAGAGA+TGG - tig0021758:89105-89124 None:intergenic 30.0%
TCTTATTGTAGATTATGACC+CGG + tig0021758:89181-89200 Msa1393770:intron 30.0%
TTCATTTCTGTAAACTCTCT+AGG - tig0021758:89317-89336 None:intergenic 30.0%
!!! GTGTTTTTTTTAGATTGGGA+AGG + tig0021758:89492-89511 Msa1393770:intron 30.0%
! GTGAATTCTGCATTGATATA+TGG + tig0021758:89561-89580 Msa1393770:intron 30.0%
CCCTGATAAAGTTTATAGAA+TGG + tig0021758:89654-89673 Msa1393770:CDS 30.0%
GCCATTCTATAAACTTTATC+AGG - tig0021758:89658-89677 None:intergenic 30.0%
TCTTAAATCAGTTCCTGTAA+GGG - tig0021758:89731-89750 None:intergenic 30.0%
! GCTTGATTTTCTTTAACGTA+AGG - tig0021758:89777-89796 None:intergenic 30.0%
! TTTCTCATTTTCCCCATAAA+AGG + tig0021758:89820-89839 Msa1393770:CDS 30.0%
! TTTCTCTCAGAACCTTTTAT+GGG - tig0021758:89835-89854 None:intergenic 30.0%
!! ATAAAAGGTTCTGAGAGAAA+GGG + tig0021758:89835-89854 Msa1393770:CDS 30.0%
TGTTGAAGTCAAGAAAAAAC+AGG + tig0021758:89867-89886 Msa1393770:CDS 30.0%
GTTGAAGTCAAGAAAAAACA+GGG + tig0021758:89868-89887 Msa1393770:CDS 30.0%
TATCATGACATGGATAAAAC+AGG - tig0021758:90052-90071 None:intergenic 30.0%
AGCTAACAAATATCATGACA+TGG - tig0021758:90062-90081 None:intergenic 30.0%
CAAAATCATACAGATGAAGT+TGG - tig0021758:90135-90154 None:intergenic 30.0%
! ATGAAGACATAATTCTGGAA+AGG - tig0021758:90158-90177 None:intergenic 30.0%
AAGCATTCAAATCGGAATAA+TGG + tig0021758:90255-90274 Msa1393770:intron 30.0%
!!! AATCAAGCCAACTTTTTCAA+AGG - tig0021758:90480-90499 None:intergenic 30.0%
!! TTTGAAAAAGTTGGCTTGAT+TGG + tig0021758:90479-90498 Msa1393770:intron 30.0%
!! TTGAAAAAGTTGGCTTGATT+GGG + tig0021758:90480-90499 Msa1393770:intron 30.0%
AGCAATGAGTTAAATCTTGA+AGG + tig0021758:90537-90556 Msa1393770:intron 30.0%
! AGGTTTAGTTTCTTTGCTAT+CGG + tig0021758:90661-90680 Msa1393770:intron 30.0%
!! CACATTTTCATTTGAGATAC+CGG + tig0021758:90777-90796 Msa1393770:intron 30.0%
!! ACATTTTCATTTGAGATACC+GGG + tig0021758:90778-90797 Msa1393770:intron 30.0%
CGAGGAAATGTTATAAAACT+CGG + tig0021758:90938-90957 Msa1393770:intron 30.0%
AAATGTTATAAAACTCGGAC+CGG + tig0021758:90943-90962 Msa1393770:intron 30.0%
!!! CGGTATGAATTTTTAAAGTG+TGG - tig0021758:91086-91105 None:intergenic 30.0%
AGACCAAATGTATAGTGTTT+AGG + tig0021758:91422-91441 Msa1393770:intron 30.0%
CATAATTGTTCCTTAATGAG+AGG - tig0021758:91613-91632 None:intergenic 30.0%
! ATTTGGAATAATGATAGGGA+AGG + tig0021758:91720-91739 Msa1393770:intron 30.0%
TACCAATTCTTGTCATTCTA+AGG + tig0021758:91783-91802 Msa1393770:intron 30.0%
TACCTTAGAATGACAAGAAT+TGG - tig0021758:91788-91807 None:intergenic 30.0%
TAAGAATCCTACCACAATAT+TGG - tig0021758:91860-91879 None:intergenic 30.0%
TGTACATTTCTTGTCTTCTA+GGG - tig0021758:92050-92069 None:intergenic 30.0%
TTGTACATTTCTTGTCTTCT+AGG - tig0021758:92051-92070 None:intergenic 30.0%
! TGGAAATGAAAAAGAGTACA+CGG + tig0021758:92204-92223 Msa1393770:CDS 30.0%
AATCATTGATGTTTCTCTTC+CGG + tig0021758:92407-92426 Msa1393770:exon 30.0%
TAATCAACAAGAGAAGAAAC+CGG - tig0021758:92429-92448 None:intergenic 30.0%
! TTTCTTCTCTTGTTGATTAC+AGG + tig0021758:92430-92449 Msa1393770:three_prime_UTR 30.0%
CTAGCAAGCAATAATAATCA+TGG + tig0021758:92669-92688 Msa1393770:three_prime_UTR 30.0%
TTAATTGTGTGGCATTGTAG+TGG - tig0021758:88070-88089 None:intergenic 35.0%
!! AATTTTGAAGAGTGGTGAAG+TGG - tig0021758:88276-88295 None:intergenic 35.0%
!! TGGGTAGTAATTTTGAAGAG+TGG - tig0021758:88284-88303 None:intergenic 35.0%
AACTTGAGGCTTTCTTCAAA+AGG + tig0021758:88505-88524 Msa1393770:CDS 35.0%
! TTCTTTGTGCTATTCTTTGG+AGG + tig0021758:88562-88581 Msa1393770:CDS 35.0%
ATTATCCAAACTGGAAAGGA+AGG - tig0021758:88696-88715 None:intergenic 35.0%
TCCTTTCCAGTTTGGATAAT+TGG + tig0021758:88696-88715 Msa1393770:intron 35.0%
TCCAATTATCCAAACTGGAA+AGG - tig0021758:88700-88719 None:intergenic 35.0%
TTGCATCCAATTATCCAAAC+TGG - tig0021758:88705-88724 None:intergenic 35.0%
! GTTAAGTTGCTTATCCAAAC+AGG - tig0021758:88838-88857 None:intergenic 35.0%
TTTCATAAGTTATCTCGGAG+AGG + tig0021758:88955-88974 Msa1393770:intron 35.0%
! ATTAAGTTGCTTATCCCAAC+CGG - tig0021758:89203-89222 None:intergenic 35.0%
AATGAACTGAAATCAGCTCA+TGG + tig0021758:89331-89350 Msa1393770:intron 35.0%
ATGAACTGAAATCAGCTCAT+GGG + tig0021758:89332-89351 Msa1393770:intron 35.0%
! AGATGTGTTAAGTCTTGTCA+TGG - tig0021758:89680-89699 None:intergenic 35.0%
TGCTCAGATTCTTGAAGTTA+TGG + tig0021758:89699-89718 Msa1393770:CDS 35.0%
GCTCAGATTCTTGAAGTTAT+GGG + tig0021758:89700-89719 Msa1393770:CDS 35.0%
TTAAATCAGTTCCTGTAAGG+GGG - tig0021758:89729-89748 None:intergenic 35.0%
CTTAAATCAGTTCCTGTAAG+GGG - tig0021758:89730-89749 None:intergenic 35.0%
CTCTTAAATCAGTTCCTGTA+AGG - tig0021758:89732-89751 None:intergenic 35.0%
AGAAAATCAAGCCAAGTCTT+AGG + tig0021758:89785-89804 Msa1393770:CDS 35.0%
! TTCTCTCAGAACCTTTTATG+GGG - tig0021758:89834-89853 None:intergenic 35.0%
! CTTTCTCTCAGAACCTTTTA+TGG - tig0021758:89836-89855 None:intergenic 35.0%
!! CATAAAAGGTTCTGAGAGAA+AGG + tig0021758:89834-89853 Msa1393770:CDS 35.0%
CTTCCAAGAAATCAAACTTC+GGG - tig0021758:90087-90106 None:intergenic 35.0%
GCTTCCAAGAAATCAAACTT+CGG - tig0021758:90088-90107 None:intergenic 35.0%
!! TTCTTGGAAGCATTCATATC+TGG + tig0021758:90097-90116 Msa1393770:intron 35.0%
AAGCATTCATATCTGGTGAA+TGG + tig0021758:90104-90123 Msa1393770:intron 35.0%
CATCAGATTGTCTTTAGTCT+AGG + tig0021758:90192-90211 Msa1393770:intron 35.0%
TGTCTTTAGTCTAGGAATAG+TGG + tig0021758:90200-90219 Msa1393770:intron 35.0%
TTTAGTCTAGGAATAGTGGT+GGG + tig0021758:90204-90223 Msa1393770:intron 35.0%
!! TTCAAATCGGAATAATGGAC+TGG + tig0021758:90260-90279 Msa1393770:intron 35.0%
! CGCTTGTGCTTTTATATACA+TGG - tig0021758:90362-90381 None:intergenic 35.0%
! GTAAAACCGCCCTTTAAAAA+TGG - tig0021758:90388-90407 None:intergenic 35.0%
! GATGCTTCCTTTGAAAAAGT+TGG + tig0021758:90470-90489 Msa1393770:intron 35.0%
! TTCCTTTTGGCACATTTCAT+TGG + tig0021758:90576-90595 Msa1393770:intron 35.0%
! GGTTTAGTTTCTTTGCTATC+GGG + tig0021758:90662-90681 Msa1393770:intron 35.0%
! GTTACTTTGGACTTGAAACA+TGG + tig0021758:90714-90733 Msa1393770:intron 35.0%
AAAATGTGAACTTCAGCACA+AGG - tig0021758:90765-90784 None:intergenic 35.0%
!! CATTTTCATTTGAGATACCG+GGG + tig0021758:90779-90798 Msa1393770:intron 35.0%
!! ATTTTCATTTGAGATACCGG+GGG + tig0021758:90780-90799 Msa1393770:intron 35.0%
CAAAAGCCTCAATGAACATA+CGG - tig0021758:90827-90846 None:intergenic 35.0%
ACAATAGTTGGGTCATAACA+TGG - tig0021758:90853-90872 None:intergenic 35.0%
TGTTATGACCCAACTATTGT+TGG + tig0021758:90853-90872 Msa1393770:intron 35.0%
TTTCCTTGAATTACACAACG+AGG + tig0021758:90920-90939 Msa1393770:intron 35.0%
TTTCCTCGTTGTGTAATTCA+AGG - tig0021758:90926-90945 None:intergenic 35.0%
GTACTATGTCAATGGATCAT+TGG + tig0021758:90983-91002 Msa1393770:intron 35.0%
TATGAACATCAACTGAAGCA+CGG - tig0021758:91106-91125 None:intergenic 35.0%
CAGTGAAAACTAGTTAGACT+CGG - tig0021758:91346-91365 None:intergenic 35.0%
AACTGATCTGAGCACTATAT+GGG - tig0021758:91387-91406 None:intergenic 35.0%
TAACTGATCTGAGCACTATA+TGG - tig0021758:91388-91407 None:intergenic 35.0%
GTGCCTAAACACTATACATT+TGG - tig0021758:91428-91447 None:intergenic 35.0%
TTAAGGAGGATTCCTTTGTT+AGG + tig0021758:91587-91606 Msa1393770:intron 35.0%
!! GTCATTCTAAGGTATTGTAC+TGG + tig0021758:91794-91813 Msa1393770:intron 35.0%
AAGGATGTTACTGGTATCTA+TGG - tig0021758:91900-91919 None:intergenic 35.0%
TACAAGGAATTTGGAGGATA+AGG - tig0021758:91919-91938 None:intergenic 35.0%
GGAAATTACAAGGAATTTGG+AGG - tig0021758:91925-91944 None:intergenic 35.0%
GGAGGAAATTACAAGGAATT+TGG - tig0021758:91928-91947 None:intergenic 35.0%
AACTTATATCACACATGCAG+AGG - tig0021758:91960-91979 None:intergenic 35.0%
ACAAGAAATGTACAATGCAG+AGG + tig0021758:92056-92075 Msa1393770:intron 35.0%
CAAGAAATGTACAATGCAGA+GGG + tig0021758:92057-92076 Msa1393770:intron 35.0%
AAGAAATGTACAATGCAGAG+GGG + tig0021758:92058-92077 Msa1393770:intron 35.0%
! AATGAAAAAGAGTACACGGT+TGG + tig0021758:92208-92227 Msa1393770:CDS 35.0%
TGATGATCTTGATGAGATTG+AGG + tig0021758:92294-92313 Msa1393770:CDS 35.0%
GTTGAGAAGGTTGAAAATAG+TGG + tig0021758:92373-92392 Msa1393770:CDS 35.0%
CAGCAATTTGTGTTACAACA+AGG - tig0021758:92520-92539 None:intergenic 35.0%
TATAATCCCTGTCTATGATG+TGG + tig0021758:92642-92661 Msa1393770:three_prime_UTR 35.0%
AGTTAACCACATCATAGACA+GGG - tig0021758:92651-92670 None:intergenic 35.0%
TAGTTAACCACATCATAGAC+AGG - tig0021758:92652-92671 None:intergenic 35.0%
!!! AGTCCATTTTTGGTGTCGAT+CGG + tig0021758:88100-88119 Msa1393770:five_prime_UTR 40.0%
ATGTCAAGAACAAAATGCGG+TGG + tig0021758:88180-88199 Msa1393770:CDS 40.0%
! AGGAAGAGAGGATGGATTTA+GGG - tig0021758:88314-88333 None:intergenic 40.0%
! AAGGAAGAGAGGATGGATTT+AGG - tig0021758:88315-88334 None:intergenic 40.0%
!!! TTTTTCTGTTTGGTGCTGCT+GGG + tig0021758:88535-88554 Msa1393770:CDS 40.0%
! TGTTGTTCTTTCTGAAGGCA+TGG + tig0021758:88611-88630 Msa1393770:CDS 40.0%
AGCAACAATAGCAGCAGAAA+GGG - tig0021758:88655-88674 None:intergenic 40.0%
AAGCAACAATAGCAGCAGAA+AGG - tig0021758:88656-88675 None:intergenic 40.0%
TCATAGGTTATGACGCTGTT+TGG + tig0021758:88879-88898 Msa1393770:intron 40.0%
! TTGTGACTTGTGAGACTGTT+TGG - tig0021758:89041-89060 None:intergenic 40.0%
ATTGTAGATTATGACCCGGT+TGG + tig0021758:89185-89204 Msa1393770:intron 40.0%
TTGTAGATTATGACCCGGTT+GGG + tig0021758:89186-89205 Msa1393770:intron 40.0%
! TTAAGTTGCTTATCCCAACC+GGG - tig0021758:89202-89221 None:intergenic 40.0%
CAAATAAGACTCCAAACCAG+CGG + tig0021758:89423-89442 Msa1393770:intron 40.0%
TAAATCAGTTCCTGTAAGGG+GGG - tig0021758:89728-89747 None:intergenic 40.0%
TTAAGAGCCTATGTGATGTC+AGG + tig0021758:89745-89764 Msa1393770:CDS 40.0%
TAAGAGCCTATGTGATGTCA+GGG + tig0021758:89746-89765 Msa1393770:CDS 40.0%
AGTCAAGAAAAAACAGGGCA+AGG + tig0021758:89873-89892 Msa1393770:CDS 40.0%
! TAGCCCGAAGTTTGATTTCT+TGG + tig0021758:90081-90100 Msa1393770:intron 40.0%
CTTTAGTCTAGGAATAGTGG+TGG + tig0021758:90203-90222 Msa1393770:intron 40.0%
CATGGTCAGAGCATGATATT+AGG - tig0021758:90344-90363 None:intergenic 40.0%
!! ACAAGCGCGTCCATTTTTAA+AGG + tig0021758:90375-90394 Msa1393770:intron 40.0%
!! CAAGCGCGTCCATTTTTAAA+GGG + tig0021758:90376-90395 Msa1393770:intron 40.0%
!! AAAAAGTTGGCTTGATTGGG+TGG + tig0021758:90483-90502 Msa1393770:intron 40.0%
!! AAAAGTTGGCTTGATTGGGT+GGG + tig0021758:90484-90503 Msa1393770:intron 40.0%
! TAAGCCATCCATGTTCCTTT+TGG + tig0021758:90563-90582 Msa1393770:intron 40.0%
GAAATGTGCCAAAAGGAACA+TGG - tig0021758:90574-90593 None:intergenic 40.0%
CTCCAATGAAATGTGCCAAA+AGG - tig0021758:90581-90600 None:intergenic 40.0%
GATGCTTGCACAAGTTACTT+TGG + tig0021758:90701-90720 Msa1393770:intron 40.0%
!! TTTTCATTTGAGATACCGGG+GGG + tig0021758:90781-90800 Msa1393770:intron 40.0%
TCTTCACCGTATGTTCATTG+AGG + tig0021758:90818-90837 Msa1393770:intron 40.0%
ATGACCCAACTATTGTTGGT+TGG + tig0021758:90857-90876 Msa1393770:intron 40.0%
GCTTCCAACCAACAATAGTT+GGG - tig0021758:90864-90883 None:intergenic 40.0%
TGCTTCCAACCAACAATAGT+TGG - tig0021758:90865-90884 None:intergenic 40.0%
TGAAAACTAGTTAGACTCGG+TGG - tig0021758:91343-91362 None:intergenic 40.0%
!!! CGAGTCTAACTAGTTTTCAC+TGG + tig0021758:91344-91363 Msa1393770:intron 40.0%
GTTTAGGCACACATACAATG+AGG + tig0021758:91438-91457 Msa1393770:intron 40.0%
ATTACCGAGCTACTCTTCTA+TGG - tig0021758:91561-91580 None:intergenic 40.0%
CTTAATGAGAGGCCTAACAA+AGG - tig0021758:91602-91621 None:intergenic 40.0%
CTTTGTTAGGCCTCTCATTA+AGG + tig0021758:91600-91619 Msa1393770:intron 40.0%
TAGGAAGTTATGGAAAAGGG+AGG + tig0021758:91686-91705 Msa1393770:intron 40.0%
AGGAAGTTATGGAAAAGGGA+GGG + tig0021758:91687-91706 Msa1393770:intron 40.0%
ATCCAAGACTCTCGAATTCT+TGG + tig0021758:91747-91766 Msa1393770:intron 40.0%
AAGACTCTCGAATTCTTGGA+GGG + tig0021758:91751-91770 Msa1393770:intron 40.0%
!! TCTAAGGTATTGTACTGGTG+TGG + tig0021758:91799-91818 Msa1393770:intron 40.0%
CTTCTGCTGTTCCAATATTG+TGG + tig0021758:91846-91865 Msa1393770:intron 40.0%
TGCTGTTCCAATATTGTGGT+AGG + tig0021758:91850-91869 Msa1393770:intron 40.0%
TTGGAGGATAAGGATGTTAC+TGG - tig0021758:91909-91928 None:intergenic 40.0%
GAGGGGAAATTTATGCTTCA+AGG + tig0021758:92075-92094 Msa1393770:intron 40.0%
TTCCAATCAGATACAAACGC+TGG - tig0021758:92189-92208 None:intergenic 40.0%
! AAAAAGAGTACACGGTTGGT+GGG + tig0021758:92212-92231 Msa1393770:CDS 40.0%
TCTTGATGAGATTGAGGATG+AGG + tig0021758:92300-92319 Msa1393770:CDS 40.0%
TGACAGACATCGACATACAT+CGG + tig0021758:92573-92592 Msa1393770:three_prime_UTR 40.0%
TAGACAGGGATTATACACTC+AGG - tig0021758:92637-92656 None:intergenic 40.0%
TCCAATCAGTCCTTGACATT+GGG - tig0021758:92702-92721 None:intergenic 40.0%
ATCCAATCAGTCCTTGACAT+TGG - tig0021758:92703-92722 None:intergenic 40.0%
!!! GTCCATTTTTGGTGTCGATC+GGG + tig0021758:88101-88120 Msa1393770:five_prime_UTR 45.0%
CCGGAGATTGAAATAACGGT+CGG - tig0021758:88132-88151 None:intergenic 45.0%
! CCGACCGTTATTTCAATCTC+CGG + tig0021758:88129-88148 Msa1393770:five_prime_UTR 45.0%
CTCGCCGGAGATTGAAATAA+CGG - tig0021758:88136-88155 None:intergenic 45.0%
TTTGAAGAGTGGTGAAGTGG+AGG - tig0021758:88273-88292 None:intergenic 45.0%
! AGAGAGGATGGATTTAGGGT+GGG - tig0021758:88310-88329 None:intergenic 45.0%
! AAGAGAGGATGGATTTAGGG+TGG - tig0021758:88311-88330 None:intergenic 45.0%
TTTCAAGGCCAAGAAGGTTC+TGG + tig0021758:88422-88441 Msa1393770:CDS 45.0%
AGGTTTCTCCAGAACCTTCT+TGG - tig0021758:88433-88452 None:intergenic 45.0%
!! GAAGGTTCTGGAGAAACCTA+CGG + tig0021758:88434-88453 Msa1393770:CDS 45.0%
! AGCCTCAAGTTGCAAAACCA+TGG - tig0021758:88496-88515 None:intergenic 45.0%
CAGCAGCACCAAACAGAAAA+AGG - tig0021758:88536-88555 None:intergenic 45.0%
!!! CTTTTTCTGTTTGGTGCTGC+TGG + tig0021758:88534-88553 Msa1393770:CDS 45.0%
!!! TTTTCTGTTTGGTGCTGCTG+GGG + tig0021758:88536-88555 Msa1393770:CDS 45.0%
! TCTGAAGGCATGGCTAAGTA+TGG + tig0021758:88621-88640 Msa1393770:CDS 45.0%
CCAAACTGGAAAGGAAGGAA+AGG - tig0021758:88691-88710 None:intergenic 45.0%
CCTTTCCTTCCTTTCCAGTT+TGG + tig0021758:88688-88707 Msa1393770:intron 45.0%
AAGTTATCTCGGAGAGGTTG+TGG + tig0021758:88961-88980 Msa1393770:intron 45.0%
ACAAATAGTCATACAGCCGC+TGG - tig0021758:89442-89461 None:intergenic 45.0%
AGGGTTTGTATATCCGCTCA+AGG + tig0021758:89620-89639 Msa1393770:intron 45.0%
AAGAGCCTATGTGATGTCAG+GGG + tig0021758:89747-89766 Msa1393770:CDS 45.0%
CAACGTTTGCTCCTAAGACT+TGG - tig0021758:89799-89818 None:intergenic 45.0%
AAAATGGAAAGACGACGCTG+AGG - tig0021758:89992-90011 None:intergenic 45.0%
!! AAAGTTGGCTTGATTGGGTG+GGG + tig0021758:90485-90504 Msa1393770:intron 45.0%
TGTGCCAAAAGGAACATGGA+TGG - tig0021758:90570-90589 None:intergenic 45.0%
!! GCTGACATGGGCTTTATTAG+AGG + tig0021758:90641-90660 Msa1393770:intron 45.0%
ACAGAATGTCCATGCCTACA+AGG + tig0021758:90739-90758 Msa1393770:intron 45.0%
! TTTCATTTGAGATACCGGGG+GGG + tig0021758:90782-90801 Msa1393770:intron 45.0%
!! TGGTGAGGGTACTATGTCAA+TGG + tig0021758:90975-90994 Msa1393770:intron 45.0%
!!! GTTAGACTCGGTGGATTTTG+TGG - tig0021758:91334-91353 None:intergenic 45.0%
GTGACCATAGAAGAGTAGCT+CGG + tig0021758:91554-91573 Msa1393770:intron 45.0%
TATGGAAAAGGGAGGGAAGT+TGG + tig0021758:91694-91713 Msa1393770:intron 45.0%
! GGGAGGGAAGTTGGTTAATT+TGG + tig0021758:91703-91722 Msa1393770:intron 45.0%
CTCCAAGAATTCGAGAGTCT+TGG - tig0021758:91752-91771 None:intergenic 45.0%
CAAGACTCTCGAATTCTTGG+AGG + tig0021758:91750-91769 Msa1393770:intron 45.0%
GAGAGGAGGAGGAAATTACA+AGG - tig0021758:91935-91954 None:intergenic 45.0%
AGAAGCCATGGGAACATCAA+CGG - tig0021758:92158-92177 None:intergenic 45.0%
! TCAGATACAAACGCTGGTCT+GGG - tig0021758:92183-92202 None:intergenic 45.0%
ATCAGATACAAACGCTGGTC+TGG - tig0021758:92184-92203 None:intergenic 45.0%
GACCAGCGTTTGTATCTGAT+TGG + tig0021758:92184-92203 Msa1393770:CDS 45.0%
! GAAAAAGAGTACACGGTTGG+TGG + tig0021758:92211-92230 Msa1393770:CDS 45.0%
! AAAAGAGTACACGGTTGGTG+GGG + tig0021758:92213-92232 Msa1393770:CDS 45.0%
ATCTGATCTAAGAGACCCTG+TGG + tig0021758:92243-92262 Msa1393770:CDS 45.0%
TGATGAGATTGAGGATGAGG+AGG + tig0021758:92303-92322 Msa1393770:CDS 45.0%
GCATCGAGAAGAAGTTGAGA+AGG + tig0021758:92360-92379 Msa1393770:CDS 45.0%
GACATCGACATACATCGGAA+TGG + tig0021758:92578-92597 Msa1393770:three_prime_UTR 45.0%
GGGATTATACACTCAGGACA+AGG - tig0021758:92631-92650 None:intergenic 45.0%
!!! TAAAATTAATTTAACATTTT+GGG - tig0021758:91472-91491 None:intergenic 5.0%
!!! ATAAAATTAATTTAACATTT+TGG - tig0021758:91473-91492 None:intergenic 5.0%
GACCCGATCGACACCAAAAA+TGG - tig0021758:88106-88125 None:intergenic 50.0%
CGATCTGTGATAGAACTCGC+CGG - tig0021758:88151-88170 None:intergenic 50.0%
CGGCGAGTTCTATCACAGAT+CGG + tig0021758:88149-88168 Msa1393770:five_prime_UTR 50.0%
!! GAGGAAGAGTTGGTGGAGTT+GGG - tig0021758:88223-88242 None:intergenic 50.0%
AAGAGTGGTGAAGTGGAGGA+GGG - tig0021758:88269-88288 None:intergenic 50.0%
! ATGGATTTAGGGTGGGGTGT+GGG - tig0021758:88303-88322 None:intergenic 50.0%
! GAGAGGATGGATTTAGGGTG+GGG - tig0021758:88309-88328 None:intergenic 50.0%
ATGGAGGAAGGAAGAGAGGA+TGG - tig0021758:88322-88341 None:intergenic 50.0%
GTGAATGGAGGAAGGAAGAG+AGG - tig0021758:88326-88345 None:intergenic 50.0%
AATTGGGGGTGAATGGAGGA+AGG - tig0021758:88334-88353 None:intergenic 50.0%
GGAAAATTGGGGGTGAATGG+AGG - tig0021758:88338-88357 None:intergenic 50.0%
GGTGGAAAATTGGGGGTGAA+TGG - tig0021758:88341-88360 None:intergenic 50.0%
ACTGGGAGGGTGGAAAATTG+GGG - tig0021758:88349-88368 None:intergenic 50.0%
GACTGGGAGGGTGGAAAATT+GGG - tig0021758:88350-88369 None:intergenic 50.0%
CTGAAAACGCCGATACGACT+GGG - tig0021758:88366-88385 None:intergenic 50.0%
TCTGAAAACGCCGATACGAC+TGG - tig0021758:88367-88386 None:intergenic 50.0%
TCAAAGCCACCACTGAACCT+CGG + tig0021758:88399-88418 Msa1393770:CDS 50.0%
TTGAAACCGAGGTTCAGTGG+TGG - tig0021758:88408-88427 None:intergenic 50.0%
ACCACTGAACCTCGGTTTCA+AGG + tig0021758:88407-88426 Msa1393770:CDS 50.0%
GTTGCAAAACCATGGCCTCA+CGG - tig0021758:88488-88507 None:intergenic 50.0%
!! GGCCATGGTTTTGCAACTTG+AGG + tig0021758:88491-88510 Msa1393770:CDS 50.0%
! TAGTCATACAGCCGCTGGTT+TGG - tig0021758:89437-89456 None:intergenic 50.0%
GGTTGATTGTGTGCCTTGAG+CGG - tig0021758:89636-89655 None:intergenic 50.0%
AGAGCCTATGTGATGTCAGG+GGG + tig0021758:89748-89767 Msa1393770:CDS 50.0%
!! GCGCGTCCATTTTTAAAGGG+CGG + tig0021758:90379-90398 Msa1393770:intron 50.0%
CCATGTCAGCAGCAATGACA+GGG - tig0021758:90631-90650 None:intergenic 50.0%
CCTGTCATTGCTGCTGACAT+GGG + tig0021758:90629-90648 Msa1393770:intron 50.0%
! ACTTCAGCACAAGGCCTTGT+AGG - tig0021758:90756-90775 None:intergenic 50.0%
! TTCATTTGAGATACCGGGGG+GGG + tig0021758:90783-90802 Msa1393770:intron 50.0%
!! ACCGGACAACGATTTGGTGA+GGG + tig0021758:90961-90980 Msa1393770:intron 50.0%
ACCCTCACCAAATCGTTGTC+CGG - tig0021758:90965-90984 None:intergenic 50.0%
TCACACATGCAGAGGAAGAG+AGG - tig0021758:91952-91971 None:intergenic 50.0%
GTTGATGTTCCCATGGCTTC+TGG + tig0021758:92157-92176 Msa1393770:CDS 50.0%
!! AAAGAGTACACGGTTGGTGG+GGG + tig0021758:92214-92233 Msa1393770:CDS 50.0%
AGACCCTGTGGTGAAAGCAA+TGG + tig0021758:92255-92274 Msa1393770:CDS 50.0%
CTGCCATTGCTTTCACCACA+GGG - tig0021758:92261-92280 None:intergenic 50.0%
! AACCTCCTGACGCTCTCTTT+TGG - tig0021758:92332-92351 None:intergenic 50.0%
! GGAATGGACTCAGCGTTTGT+TGG + tig0021758:92594-92613 Msa1393770:three_prime_UTR 50.0%
GCCCAATGTCAAGGACTGAT+TGG + tig0021758:92698-92717 Msa1393770:three_prime_UTR 50.0%
!! GGAGGAAGAGTTGGTGGAGT+TGG - tig0021758:88224-88243 None:intergenic 55.0%
AGAGTGGTGAAGTGGAGGAG+GGG - tig0021758:88268-88287 None:intergenic 55.0%
GAAGAGTGGTGAAGTGGAGG+AGG - tig0021758:88270-88289 None:intergenic 55.0%
! GATGGATTTAGGGTGGGGTG+TGG - tig0021758:88304-88323 None:intergenic 55.0%
CTGGGAGGGTGGAAAATTGG+GGG - tig0021758:88348-88367 None:intergenic 55.0%
CGACTGGGAGGGTGGAAAAT+TGG - tig0021758:88351-88370 None:intergenic 55.0%
TTCCACCCTCCCAGTCGTAT+CGG + tig0021758:88354-88373 Msa1393770:CDS 55.0%
AAACGCCGATACGACTGGGA+GGG - tig0021758:88362-88381 None:intergenic 55.0%
AAAACGCCGATACGACTGGG+AGG - tig0021758:88363-88382 None:intergenic 55.0%
GCCTTGAAACCGAGGTTCAG+TGG - tig0021758:88411-88430 None:intergenic 55.0%
!! CCTTCTTGGCCTTGAAACCG+AGG - tig0021758:88419-88438 None:intergenic 55.0%
CCTCGGTTTCAAGGCCAAGA+AGG + tig0021758:88416-88435 Msa1393770:CDS 55.0%
CCCTGTCATTGCTGCTGACA+TGG + tig0021758:90628-90647 Msa1393770:intron 55.0%
CCCATGTCAGCAGCAATGAC+AGG - tig0021758:90632-90651 None:intergenic 55.0%
! AGCACAAGGCCTTGTAGGCA+TGG - tig0021758:90751-90770 None:intergenic 55.0%
! TCATTTGAGATACCGGGGGG+GGG + tig0021758:90784-90803 Msa1393770:intron 55.0%
ACTCGGACCGGACAACGATT+TGG + tig0021758:90955-90974 Msa1393770:intron 55.0%
!! GACCGGACAACGATTTGGTG+AGG + tig0021758:90960-90979 Msa1393770:intron 55.0%
ATGCAGAGGAAGAGAGGAGG+AGG - tig0021758:91946-91965 None:intergenic 55.0%
CACATGCAGAGGAAGAGAGG+AGG - tig0021758:91949-91968 None:intergenic 55.0%
GCTAGCCGTTGATGTTCCCA+TGG + tig0021758:92150-92169 Msa1393770:CDS 55.0%
GCTGCCATTGCTTTCACCAC+AGG - tig0021758:92262-92281 None:intergenic 55.0%
!! GGATGCCAAAAGAGAGCGTC+AGG + tig0021758:92324-92343 Msa1393770:CDS 55.0%
!! TGCCAAAAGAGAGCGTCAGG+AGG + tig0021758:92327-92346 Msa1393770:CDS 55.0%
TGGGCGAATGCCCAATGTCA+AGG + tig0021758:92689-92708 Msa1393770:three_prime_UTR 55.0%
!! AAGGGTGGCGGAGGAAGAGT+TGG - tig0021758:88233-88252 None:intergenic 60.0%
GTGCGGAAGTGAAAGGGTGG+CGG - tig0021758:88245-88264 None:intergenic 60.0%
! GAGGGGGTGCGGAAGTGAAA+GGG - tig0021758:88251-88270 None:intergenic 60.0%
GAGTGGTGAAGTGGAGGAGG+GGG - tig0021758:88267-88286 None:intergenic 60.0%
TCTGGAGAAACCTACGGCCG+CGG + tig0021758:88440-88459 Msa1393770:CDS 60.0%
CGTGAAAGCAGAGGTCACCG+CGG - tig0021758:88460-88479 None:intergenic 60.0%
CGGTGACCTCTGCTTTCACG+CGG + tig0021758:88460-88479 Msa1393770:CDS 60.0%
ACGGTACCGCGTGAAAGCAG+AGG - tig0021758:88469-88488 None:intergenic 60.0%
TGCTTTCACGCGGTACCGTG+AGG + tig0021758:88470-88489 Msa1393770:CDS 60.0%
GCCTATGTGATGTCAGGGGG+TGG + tig0021758:89751-89770 Msa1393770:CDS 60.0%
GCCACCCCCTGACATCACAT+AGG - tig0021758:89755-89774 None:intergenic 60.0%
! CATTTGAGATACCGGGGGGG+GGG + tig0021758:90785-90804 Msa1393770:intron 60.0%
! ATTTGAGATACCGGGGGGGG+GGG + tig0021758:90786-90805 Msa1393770:intron 60.0%
TGGTCTGGGCCAGAAGCCAT+GGG - tig0021758:92169-92188 None:intergenic 60.0%
!! GGTGGCGGAGGAAGAGTTGG+TGG - tig0021758:88230-88249 None:intergenic 65.0%
! CGGAAGTGAAAGGGTGGCGG+AGG - tig0021758:88242-88261 None:intergenic 65.0%
GGGGTGCGGAAGTGAAAGGG+TGG - tig0021758:88248-88267 None:intergenic 65.0%
! GGAGGGGGTGCGGAAGTGAA+AGG - tig0021758:88252-88271 None:intergenic 65.0%
GTGAAGTGGAGGAGGGGGTG+CGG - tig0021758:88262-88281 None:intergenic 65.0%
GTTATGGGCGCCCCCCTTAC+AGG + tig0021758:89715-89734 Msa1393770:CDS 65.0%
! TTTGAGATACCGGGGGGGGG+GGG + tig0021758:90787-90806 Msa1393770:intron 65.0%
CTGGTCTGGGCCAGAAGCCA+TGG - tig0021758:92170-92189 None:intergenic 65.0%
TGCGTTGCGTTGCGCTGCGC+AGG - tig0021758:88046-88065 None:intergenic 70.0%
CGCCGATACGACTGGGAGGG+TGG - tig0021758:88359-88378 None:intergenic 70.0%
CACGCGGTACCGTGAGGCCA+TGG + tig0021758:88476-88495 Msa1393770:CDS 70.0%
TTGAGATACCGGGGGGGGGG+GGG + tig0021758:90788-90807 Msa1393770:intron 70.0%
GCAGAGGTCACCGCGGCCGT+AGG - tig0021758:88453-88472 None:intergenic 75.0%
TGAGATACCGGGGGGGGGGG+GGG + tig0021758:90789-90808 Msa1393770:intron 75.0%
! GAGATACCGGGGGGGGGGGG+GGG + tig0021758:90790-90809 Msa1393770:intron 80.0%
! AGATACCGGGGGGGGGGGGG+GGG + tig0021758:90791-90810 Msa1393770:intron 80.0%
! GATACCGGGGGGGGGGGGGG+GGG + tig0021758:90792-90811 Msa1393770:intron 85.0%
! ATACCGGGGGGGGGGGGGGG+GGG + tig0021758:90793-90812 Msa1393770:intron 85.0%
! AGTCCCCCCCCCCCCCCCCC+CGG - tig0021758:90799-90818 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
tig0021758 gene 87998 92737 87998 ID=Msa1393770;Name=Msa1393770
tig0021758 mRNA 87998 92737 87998 ID=Msa1393770-mRNA-1;Parent=Msa1393770;Name=Msa1393770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=176|1|1|1|1|1|3|329|350
tig0021758 exon 87998 88680 87998 ID=Msa1393770-mRNA-1:exon:13960;Parent=Msa1393770-mRNA-1
tig0021758 exon 89622 89894 89622 ID=Msa1393770-mRNA-1:exon:13961;Parent=Msa1393770-mRNA-1
tig0021758 exon 92136 92737 92136 ID=Msa1393770-mRNA-1:exon:13962;Parent=Msa1393770-mRNA-1
tig0021758 five_prime_UTR 87998 88173 87998 ID=Msa1393770-mRNA-1:five_prime_utr;Parent=Msa1393770-mRNA-1
tig0021758 CDS 88174 88680 88174 ID=Msa1393770-mRNA-1:cds;Parent=Msa1393770-mRNA-1
tig0021758 CDS 89622 89894 89622 ID=Msa1393770-mRNA-1:cds;Parent=Msa1393770-mRNA-1
tig0021758 CDS 92136 92408 92136 ID=Msa1393770-mRNA-1:cds;Parent=Msa1393770-mRNA-1
tig0021758 three_prime_UTR 92409 92737 92409 ID=Msa1393770-mRNA-1:three_prime_utr;Parent=Msa1393770-mRNA-1
Gene Sequence

>Msa1393770

ATGCAAATGTCAAGAACAAAATGCGGTGGTTGTTCACAACGAATCACCCAACTCCACCAACTCTTCCTCCGCCACCCTTTCACTTCCGCACCCCCTCCTCCACTTCACCACTCTTCAAAATTACTACCCACACCCCACCCTAAATCCATCCTCTCTTCCTTCCTCCATTCACCCCCAATTTTCCACCCTCCCAGTCGTATCGGCGTTTTCAGATTCTTCTCTTCTTCAAAGCCACCACTGAACCTCGGTTTCAAGGCCAAGAAGGTTCTGGAGAAACCTACGGCCGCGGTGACCTCTGCTTTCACGCGGTACCGTGAGGCCATGGTTTTGCAACTTGAGGCTTTCTTCAAAAGGAATAACCTTTTTCTGTTTGGTGCTGCTGGGGTTGTTCTTTGTGCTATTCTTTGGAGGATTATGTTTGGTATTGCTAATACTTTTGTTGTTCTTTCTGAAGGCATGGCTAAGTATGGTTTCTTATCCCTTTCTGCTGCTATTGTTGCTTTTACTGGTTTGTATATCCGCTCAAGGCACACAATCAACCCTGATAAAGTTTATAGAATGGCCATGACAAGACTTAACACATCTGCTCAGATTCTTGAAGTTATGGGCGCCCCCCTTACAGGAACTGATTTAAGAGCCTATGTGATGTCAGGGGGTGGCCTTACGTTAAAGAAAATCAAGCCAAGTCTTAGGAGCAAACGTTGTTTTCTCATTTTCCCCATAAAAGGTTCTGAGAGAAAGGGTCTAGTGAATGTTGAAGTCAAGAAAAAACAGGGCAAGTATGATATGAAGCTGCTAGCCGTTGATGTTCCCATGGCTTCTGGCCCAGACCAGCGTTTGTATCTGATTGGAAATGAAAAAGAGTACACGGTTGGTGGGGGACTGATATCTGATCTAAGAGACCCTGTGGTGAAAGCAATGGCAGCAACCAAAGAATTTGATGATCTTGATGAGATTGAGGATGAGGAGGATGCCAAAAGAGAGCGTCAGGAGGTTGAACGAAAGCATCGAGAAGAAGTTGAGAAGGTTGAAAATAGTGGTACCAAGCAATAA
Protein sequence

>Msa1393770

MQMSRTKCGGCSQRITQLHQLFLRHPFTSAPPPPLHHSSKLLPTPHPKSILSSFLHSPPIFHPPSRIGVFRFFSSSKPPLNLGFKAKKVLEKPTAAVTSAFTRYREAMVLQLEAFFKRNNLFLFGAAGVVLCAILWRIMFGIANTFVVLSEGMAKYGFLSLSAAIVAFTGLYIRSRHTINPDKVYRMAMTRLNTSAQILEVMGAPLTGTDLRAYVMSGGGLTLKKIKPSLRSKRCFLIFPIKGSERKGLVNVEVKKKQGKYDMKLLAVDVPMASGPDQRLYLIGNEKEYTVGGGLISDLRDPVVKAMAATKEFDDLDEIEDEEDAKRERQEVERKHREEVEKVENSGTKQ*