AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0517370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0517370 MtrunA17_Chr3g0128781 73.867 375 34 6 1 375 1 311 0.0 521
Msa0517370 MtrunA17_Chr5g0432701 40.526 380 143 11 7 375 51 358 4.53e-69 221
Msa0517370 MtrunA17_Chr3g0107491 46.875 192 61 6 7 159 38 227 3.71e-38 140
Msa0517370 MtrunA17_Chr3g0107491 46.835 158 73 5 222 375 227 377 8.34e-35 131
Msa0517370 MtrunA17_Chr6g0463571 46.591 176 69 6 7 159 28 201 1.57e-29 115
Msa0517370 MtrunA17_Chr2g0329551 37.975 237 79 8 7 185 72 298 2.59e-26 109
Msa0517370 MtrunA17_Chr4g0036071 57.732 97 40 1 90 185 341 437 5.00e-23 100
Msa0517370 MtrunA17_Chr1g0156051 70.000 50 15 0 92 141 370 419 6.38e-14 73.2
Msa0517370 MtrunA17_Chr1g0202051 33.588 131 75 2 24 154 51 169 1.06e-11 65.1
Msa0517370 MtrunA17_Chr2g0316551 57.692 52 22 0 107 158 206 257 7.94e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0517370 AT2G40620.1 35.533 394 127 15 5 351 32 345 3.17e-45 159
Msa0517370 AT1G06850.2 60.606 99 36 2 78 175 116 212 2.76e-30 116
Msa0517370 AT1G06850.1 54.545 110 48 2 78 185 116 225 3.38e-29 115
Msa0517370 AT1G06850.1 40.361 166 72 4 205 364 182 326 5.12e-26 107
Msa0517370 AT1G43700.1 38.723 235 65 7 70 290 142 311 4.09e-29 115
Msa0517370 AT2G31370.5 41.206 199 66 7 7 159 58 251 2.37e-27 111
Msa0517370 AT2G31370.2 41.206 199 66 7 7 159 58 251 2.93e-27 111
Msa0517370 AT2G31370.4 41.206 199 66 7 7 159 58 251 2.93e-27 111
Msa0517370 AT2G31370.1 41.206 199 66 7 7 159 58 251 2.93e-27 111
Msa0517370 AT2G31370.7 41.206 199 66 7 7 159 58 251 2.93e-27 111
Msa0517370 AT2G31370.3 41.206 199 66 7 7 159 58 251 2.93e-27 111
Msa0517370 AT2G31370.6 41.206 199 66 7 7 159 58 251 2.93e-27 111
Msa0517370 AT1G06070.1 41.146 192 70 6 7 159 73 260 2.90e-26 109
Msa0517370 AT4G38900.2 62.069 87 30 1 92 178 377 460 6.63e-23 100
Msa0517370 AT4G38900.2 70.833 48 14 0 222 269 444 491 5.42e-13 70.5
Msa0517370 AT4G38900.3 62.069 87 30 1 92 178 377 460 6.63e-23 100
Msa0517370 AT4G38900.3 70.833 48 14 0 222 269 444 491 5.42e-13 70.5
Msa0517370 AT4G38900.1 58.065 93 30 2 92 178 377 466 1.13e-20 94.0
Msa0517370 AT4G38900.1 70.833 48 14 0 222 269 450 497 5.32e-13 70.9
Msa0517370 AT2G21230.2 46.032 126 66 2 66 190 328 452 1.48e-20 93.2
Msa0517370 AT2G21230.3 46.774 124 64 2 66 188 328 450 1.82e-20 93.2
Msa0517370 AT2G21230.4 47.107 121 62 2 66 185 328 447 5.24e-20 92.0
Msa0517370 AT2G21230.4 64.583 48 17 0 222 269 420 467 2.53e-11 65.5
Msa0517370 AT2G21230.1 47.107 121 62 2 66 185 328 447 5.24e-20 92.0
Msa0517370 AT2G21230.1 64.583 48 17 0 222 269 420 467 2.53e-11 65.5
Msa0517370 AT3G58120.2 43.210 81 36 1 109 189 202 272 3.82e-11 63.5
Msa0517370 AT3G58120.1 43.210 81 36 1 109 189 202 272 7.15e-11 63.2

Find 144 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTGTTCTGTACTTAA+TGG 0.146556 3_4:+68967330 Msa0517370:three_prime_UTR
TGATTCTATCGGCCAATTTC+AGG 0.184834 3_4:+68966825 Msa0517370:CDS
CATGTCACTACCCTGTTTAT+TGG 0.215779 3_4:+68966949 Msa0517370:three_prime_UTR
AACATGGTCCAAACGATCTT+AGG 0.241223 3_4:+68966695 Msa0517370:CDS
TTTGATTTGATTCAGGATTC+TGG 0.271099 3_4:+68964582 Msa0517370:intron
CAATGTCCAGCCCCTGAAAT+TGG 0.281734 3_4:-68966837 None:intergenic
ATGTCACTACCCTGTTTATT+GGG 0.283940 3_4:+68966950 Msa0517370:three_prime_UTR
GCCCACTCCACCTGTGAATA+TGG 0.284368 3_4:-68965216 None:intergenic
CACAATTGAGCAAGTTTATC+AGG 0.289271 3_4:-68964461 None:intergenic
TTTCATTCCCTCTCATCTAA+TGG 0.291764 3_4:+68966736 Msa0517370:CDS
CGTCTGTAGCGATGAGATTA+GGG 0.313339 3_4:+68964922 Msa0517370:CDS
GAGAAATGTTATTGAATAGA+AGG 0.328844 3_4:-68967355 None:intergenic
GCGTCTGTAGCGATGAGATT+AGG 0.338160 3_4:+68964921 Msa0517370:CDS
AACGTCCCAACCCTCATTAA+TGG 0.339576 3_4:-68965135 None:intergenic
TTAGACTTGAAATTAATTCA+TGG 0.342642 3_4:+68967194 Msa0517370:three_prime_UTR
GTTGCGGTGGTGGTGGATCT+TGG 0.360501 3_4:-68964280 None:intergenic
AAAGAAGGTTAAGTTCAAAA+AGG 0.362449 3_4:-68964030 None:intergenic
GAATTAATTTCAAGTCTAAC+AGG 0.366447 3_4:-68967190 None:intergenic
TAATGAGGGTTGGGACGTTA+TGG 0.370255 3_4:+68965139 Msa0517370:CDS
AGGGGCTGGACATTGGCAAC+AGG 0.370603 3_4:+68966845 Msa0517370:CDS
CTATGAACAACCCAATAAAC+AGG 0.371418 3_4:-68966960 None:intergenic
AAGCTTGAGAATATGAAAAT+TGG 0.377609 3_4:-68966651 None:intergenic
TCAAGGTACATGATCCATTA+TGG 0.378625 3_4:+68967241 Msa0517370:three_prime_UTR
TTCAATTATTTATTTGATTG+AGG 0.379194 3_4:+68967028 Msa0517370:three_prime_UTR
ATCAGAGAGGTAGGTTGAAT+TGG 0.379412 3_4:+68964892 Msa0517370:CDS
TGCATGGCCCTAAGATCGTT+TGG 0.389186 3_4:-68966703 None:intergenic
CCATGCTGATACCTATGGTT+TGG 0.391118 3_4:+68966621 Msa0517370:CDS
AAAGACCTCTTGGCGCGTTT+AGG 0.396524 3_4:-68964494 None:intergenic
GGTCGAAATCGTCGGGGATT+CGG 0.403638 3_4:-68964214 None:intergenic
GAGTTTGGATCCGGAATTAT+CGG 0.405371 3_4:-68964336 None:intergenic
TTTGCATCAAAAGGCGTTGT+TGG 0.405645 3_4:-68966917 None:intergenic
CGACGATTTCGACCTCGAAA+TGG 0.407698 3_4:+68964223 Msa0517370:CDS
TACATCGATTCCGATAATTC+CGG 0.408499 3_4:+68964326 Msa0517370:CDS
CATGCTGATACCTATGGTTT+GGG 0.409516 3_4:+68966622 Msa0517370:CDS
TTAGTAAAATTTGCATCAAA+AGG 0.417524 3_4:-68966926 None:intergenic
AAACTGAGGCTGGTGGGGAC+TGG 0.421487 3_4:-68966761 None:intergenic
TCAATTATTTATTTGATTGA+GGG 0.422899 3_4:+68967029 Msa0517370:three_prime_UTR
ACCCACTTCGTATGATTTGT+CGG 0.426091 3_4:+68966789 Msa0517370:CDS
GATTCTATCGGCCAATTTCA+GGG 0.428325 3_4:+68966826 Msa0517370:CDS
GTGGTGGTGGATCTTGGAAC+TGG 0.429585 3_4:-68964274 None:intergenic
TTGTGCATAAATGACCATAA+TGG 0.434575 3_4:-68967255 None:intergenic
TATCGGCCAATTTCAGGGGC+TGG 0.448809 3_4:+68966831 Msa0517370:CDS
CATCGTTGCGGTTACCGATC+CGG 0.453334 3_4:-68964147 None:intergenic
GATAGGCTCAAGCTTGCTAC+TGG 0.454169 3_4:+68966586 Msa0517370:CDS
ATTGAGATCGACGGTGGAAC+GGG 0.455173 3_4:-68964178 None:intergenic
CATTGAAGAACGAAGTTGAT+AGG 0.457070 3_4:+68966569 Msa0517370:CDS
ATTTCGAGGTCGAAATCGTC+GGG 0.457489 3_4:-68964221 None:intergenic
TCTCATGTTCTGATGCCTGA+TGG 0.464397 3_4:+68966871 Msa0517370:CDS
AGTTGTTGTGGCCATTAATG+AGG 0.469035 3_4:+68965124 Msa0517370:intron
TGTGGCCATTAATGAGGGTT+GGG 0.470788 3_4:+68965130 Msa0517370:CDS
GAAGACGACGGGATTCAAAC+CGG 0.472913 3_4:+68964128 Msa0517370:five_prime_UTR
GGCGGTAGGAGAATTGAGTT+TGG 0.473174 3_4:-68964351 None:intergenic
AATTGAAACAAATGTCTTCA+AGG 0.480097 3_4:+68967145 Msa0517370:three_prime_UTR
TAGCTTAGCTTGTTGCTCCA+TGG 0.487772 3_4:-68965542 None:intergenic
TGTGTGTGGGAACGTCGAAT+TGG 0.488371 3_4:+68965190 Msa0517370:CDS
CTGATAAACTTGCTCAATTG+TGG 0.489201 3_4:+68964462 Msa0517370:CDS
ACAGAAACGGAGGGACCATC+AGG 0.491647 3_4:-68966886 None:intergenic
AGGAGAATTGAGTTTGGATC+CGG 0.498325 3_4:-68964345 None:intergenic
GGAATTGCTACGGCGGTGAC+CGG 0.499947 3_4:-68964381 None:intergenic
TCATATGAAGATTCTGTTCA+AGG 0.500008 3_4:+68965162 Msa0517370:CDS
TCTTCTTCCTTGTTGTCTGA+AGG 0.501718 3_4:+68964413 Msa0517370:CDS
CCAACCCATGCTGATACCTA+TGG 0.503575 3_4:+68966616 Msa0517370:CDS
CAATTTCAGGGGCTGGACAT+TGG 0.506474 3_4:+68966838 Msa0517370:CDS
TTGTGGCCATTAATGAGGGT+TGG 0.509108 3_4:+68965129 Msa0517370:CDS
AGATCAAACTGAGGCTGGTG+GGG 0.510809 3_4:-68966766 None:intergenic
GTTCCACCGTCGATCTCAAT+CGG 0.512206 3_4:+68964181 Msa0517370:CDS
ATTATCGGAATCGATGTAAG+AGG 0.514373 3_4:-68964321 None:intergenic
ACATGGTCCAAACGATCTTA+GGG 0.515048 3_4:+68966696 Msa0517370:CDS
TAGATCAAACTGAGGCTGGT+GGG 0.518122 3_4:-68966767 None:intergenic
TCGTCGTGTTGTTGCGGTGG+TGG 0.518420 3_4:-68964290 None:intergenic
TCGTGTTGTTGCGGTGGTGG+TGG 0.524797 3_4:-68964287 None:intergenic
TCTCCTACCGCCGCTAATGC+CGG 0.526393 3_4:+68964362 Msa0517370:CDS
CATTTCGAGGTCGAAATCGT+CGG 0.531230 3_4:-68964222 None:intergenic
TTTCTTCCACGTAGTTGTTG+TGG 0.532491 3_4:+68965112 Msa0517370:intron
TATTTGATTGAGGGTGTATG+TGG 0.536816 3_4:+68967038 Msa0517370:three_prime_UTR
TGGGTAGATCAAACTGAGGC+TGG 0.537417 3_4:-68966771 None:intergenic
ACGGCGGTGACCGGCATTAG+CGG 0.537421 3_4:-68964372 None:intergenic
AAAATACCGAGTTGAAGCTT+CGG 0.538764 3_4:+68965512 Msa0517370:CDS
CGTTTGGACCATGTTGTGGT+TGG 0.540715 3_4:-68966687 None:intergenic
GTTATGTGGTTGAGCTTGAA+AGG 0.547036 3_4:+68964647 Msa0517370:CDS
CGGAGAAGCGTCGAAGTCGA+AGG 0.552256 3_4:-68964249 None:intergenic
ATGAAAATGTTGCATTTGCA+TGG 0.556228 3_4:-68966719 None:intergenic
GGGGCTGGACATTGGCAACA+GGG 0.559117 3_4:+68966846 Msa0517370:CDS
GATTGAGATCGACGGTGGAA+CGG 0.569204 3_4:-68964179 None:intergenic
CGGAATCGATGTAAGAGGAA+AGG 0.570255 3_4:-68964316 None:intergenic
AGGAGATCGTCGTGTTGTTG+CGG 0.570948 3_4:-68964296 None:intergenic
CATATGAAGATTCTGTTCAA+GGG 0.573485 3_4:+68965163 Msa0517370:CDS
ATGTATCGGCGGAATTGCTA+CGG 0.574251 3_4:-68964391 None:intergenic
AGATCGTTTGGACCATGTTG+TGG 0.576424 3_4:-68966691 None:intergenic
AGAGAGGAAAGCTTGTTATG+TGG 0.577168 3_4:+68964633 Msa0517370:CDS
GACTGGATCCATTAGATGAG+AGG 0.584227 3_4:-68966744 None:intergenic
AGTCGAAGGGATCCATTTCG+AGG 0.586525 3_4:-68964235 None:intergenic
TTGGTGCATTCCCAAACCAT+AGG 0.592111 3_4:-68966632 None:intergenic
CAACAAGGAAGAAGATGTAT+CGG 0.593104 3_4:-68964405 None:intergenic
CCGCGGCGAGGTCGAAAGAG+AGG 0.593130 3_4:+68964617 Msa0517370:CDS
GTTGTTGTGGCCATTAATGA+GGG 0.595819 3_4:+68965125 Msa0517370:intron
ACTGGATCCATTAGATGAGA+GGG 0.595904 3_4:-68966743 None:intergenic
GTAGATCAAACTGAGGCTGG+TGG 0.597370 3_4:-68966768 None:intergenic
GAATTGGACTCCATATTCAC+AGG 0.598417 3_4:+68965206 Msa0517370:CDS
TTCCGACAAATCATACGAAG+TGG 0.598591 3_4:-68966791 None:intergenic
ATTCTATCGGCCAATTTCAG+GGG 0.601347 3_4:+68966827 Msa0517370:CDS
GAAGCTTCGGTTACAAACCA+TGG 0.603767 3_4:+68965525 Msa0517370:CDS
ATGTTGTGGTTGGTGCATGA+AGG 0.606809 3_4:-68966677 None:intergenic
CAACAAGCTAAGCTATGTGA+TGG 0.613164 3_4:+68965550 Msa0517370:CDS
TTCGATTCCTTCAGACAACA+AGG 0.616363 3_4:-68964420 None:intergenic
ATTCAACCTACCTCTCTGAT+CGG 0.620440 3_4:-68964889 None:intergenic
GGAGAAGCGTCGAAGTCGAA+GGG 0.620947 3_4:-68964248 None:intergenic
ATAAATCCGATCAGAGAGGT+AGG 0.623366 3_4:+68964883 Msa0517370:CDS
TTGTAACCGAAGCTTCAACT+CGG 0.625038 3_4:-68965518 None:intergenic
AGATCGTCGTGTTGTTGCGG+TGG 0.629335 3_4:-68964293 None:intergenic
CTTGGCGCGTTTAGGATCAA+CGG 0.630373 3_4:-68964486 None:intergenic
CCTCTCTTTCGACCTCGCCG+CGG 0.634132 3_4:-68964617 None:intergenic
TCCGACAAATCATACGAAGT+GGG 0.636300 3_4:-68966790 None:intergenic
CCAAACCATAGGTATCAGCA+TGG 0.641882 3_4:-68966621 None:intergenic
TTCATGCACCAACCACAACA+TGG 0.648904 3_4:+68966679 Msa0517370:CDS
CTCTCTCACACACACTCGCG+CGG 0.652014 3_4:-68964076 None:intergenic
AATGTGATTGAAAATTGTCA+AGG 0.657322 3_4:+68967224 Msa0517370:three_prime_UTR
GGTGGATCTTGGAACTGGAG+CGG 0.658797 3_4:-68964269 None:intergenic
CGGGAACGACGACATCGTTG+CGG 0.659963 3_4:-68964159 None:intergenic
CGAATCGTCAATCCGCGGCG+AGG 0.660871 3_4:+68964605 Msa0517370:CDS
CCATAGGTATCAGCATGGGT+TGG 0.661247 3_4:-68966616 None:intergenic
CAAACCATAGGTATCAGCAT+GGG 0.662566 3_4:-68966620 None:intergenic
GTTCAAGGGAATCTGTGTGT+GGG 0.662638 3_4:+68965177 Msa0517370:CDS
TTGATCCTAAACGCGCCAAG+AGG 0.666281 3_4:+68964489 Msa0517370:CDS
GCTCAAGCTTGCTACTGGAG+AGG 0.667501 3_4:+68966591 Msa0517370:CDS
CCTCCGATTGAGATCGACGG+TGG 0.668695 3_4:-68964184 None:intergenic
CAAGGAAGAAGATGTATCGG+CGG 0.669677 3_4:-68964402 None:intergenic
CGACGGGATTCAAACCGGAT+CGG 0.671774 3_4:+68964133 Msa0517370:five_prime_UTR
TGACCGGCATTAGCGGCGGT+AGG 0.676875 3_4:-68964365 None:intergenic
ATGTTGTCAAGTGATTCTAT+CGG 0.677885 3_4:+68966814 Msa0517370:CDS
TGTTCAAGGGAATCTGTGTG+TGG 0.681982 3_4:+68965176 Msa0517370:CDS
GTCTGTAGCGATGAGATTAG+GGG 0.691568 3_4:+68964923 Msa0517370:CDS
TATCGGCGGAATTGCTACGG+CGG 0.692611 3_4:-68964388 None:intergenic
CCACCGTCGATCTCAATCGG+AGG 0.695045 3_4:+68964184 Msa0517370:CDS
TGAAACAAATGTCTTCAAGG+TGG 0.697816 3_4:+68967148 Msa0517370:three_prime_UTR
GCGGTGACCGGCATTAGCGG+CGG 0.701383 3_4:-68964369 None:intergenic
GTACCTCCGATTGAGATCGA+CGG 0.703198 3_4:-68964187 None:intergenic
TGTAGCGATGAGATTAGGGG+TGG 0.704993 3_4:+68964926 Msa0517370:CDS
TATGAACAACCCAATAAACA+GGG 0.708468 3_4:-68966959 None:intergenic
TTTCGAGGTCGAAATCGTCG+GGG 0.718515 3_4:-68964220 None:intergenic
TCTGGCGAATCGTCAATCCG+CGG 0.722384 3_4:+68964600 Msa0517370:CDS
AGTGATAAATCCGATCAGAG+AGG 0.722453 3_4:+68964879 Msa0517370:CDS
TTGACACGAGTGAGACCCAG+AGG 0.732492 3_4:+68966984 Msa0517370:three_prime_UTR
GAAGTGGGTAGATCAAACTG+AGG 0.775188 3_4:-68966775 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATCTAAAAAAAC+CGG - chr3_4:68967101-68967120 None:intergenic 10.0%
!!! TAATATTTTTGATTCAACTT+AGG - chr3_4:68964750-68964769 None:intergenic 15.0%
!!! TAATTTTAGTCTCTTAAATT+TGG + chr3_4:68965735-68965754 Msa0517370:intron 15.0%
!! TTCAATTATTTATTTGATTG+AGG + chr3_4:68967028-68967047 Msa0517370:three_prime_UTR 15.0%
!! TCAATTATTTATTTGATTGA+GGG + chr3_4:68967029-68967048 Msa0517370:three_prime_UTR 15.0%
!!! AAAAAAGTACTAAATTTAAC+CGG + chr3_4:68967079-68967098 Msa0517370:three_prime_UTR 15.0%
!! AATAAGAGTGAGAATTATTT+AGG + chr3_4:68964988-68965007 Msa0517370:intron 20.0%
!! AAAAAAATAACCAAAGGATA+GGG - chr3_4:68965288-68965307 None:intergenic 20.0%
!! AAAAAAAATAACCAAAGGAT+AGG - chr3_4:68965289-68965308 None:intergenic 20.0%
!! TGGAAAAAAAAAATAACCAA+AGG - chr3_4:68965294-68965313 None:intergenic 20.0%
!!! TGGTTATTTTTTTTTTCCAT+TGG + chr3_4:68965295-68965314 Msa0517370:intron 20.0%
!!! GGTTATTTTTTTTTTCCATT+GGG + chr3_4:68965296-68965315 Msa0517370:intron 20.0%
!! ATATAAGGAATTTAACAAAC+TGG - chr3_4:68965403-68965422 None:intergenic 20.0%
!! TGTTAAATTCCTTATATTAG+TGG + chr3_4:68965406-68965425 Msa0517370:intron 20.0%
!! TATAAGTTATCTTGTAGTAT+CGG + chr3_4:68965838-68965857 Msa0517370:intron 20.0%
!! ATAGACAAAACATTAATGTT+TGG - chr3_4:68965902-68965921 None:intergenic 20.0%
!! TTAGTAAAATTTGCATCAAA+AGG - chr3_4:68966929-68966948 None:intergenic 20.0%
!!! ATTTGTTTCAATTCTTTTTG+GGG - chr3_4:68967138-68967157 None:intergenic 20.0%
!!! CATTTGTTTCAATTCTTTTT+GGG - chr3_4:68967139-68967158 None:intergenic 20.0%
!!! ACATTTGTTTCAATTCTTTT+TGG - chr3_4:68967140-68967159 None:intergenic 20.0%
!! TTAGACTTGAAATTAATTCA+TGG + chr3_4:68967194-68967213 Msa0517370:three_prime_UTR 20.0%
! AAAGAAGGTTAAGTTCAAAA+AGG - chr3_4:68964033-68964052 None:intergenic 25.0%
!! ACCTTCTTTTTATCATTGAA+AGG + chr3_4:68964044-68964063 Msa0517370:five_prime_UTR 25.0%
! TCCTTTCAATGATAAAAAGA+AGG - chr3_4:68964048-68964067 None:intergenic 25.0%
! AGAAAAAAAAAAGAAGACGA+CGG + chr3_4:68964116-68964135 Msa0517370:five_prime_UTR 25.0%
! AGTTCAATTAAAGGAAACAA+AGG - chr3_4:68965374-68965393 None:intergenic 25.0%
! TTGTTTCCTTTAATTGAACT+TGG + chr3_4:68965374-68965393 Msa0517370:intron 25.0%
! TAAATTCCTTATATTAGTGG+TGG + chr3_4:68965409-68965428 Msa0517370:intron 25.0%
! AAATTCCTTATATTAGTGGT+GGG + chr3_4:68965410-68965429 Msa0517370:intron 25.0%
! TTCCATCAGTATAATATGAA+AGG + chr3_4:68965650-68965669 Msa0517370:intron 25.0%
! CATATTCTAACAGAAACTAT+AGG - chr3_4:68965780-68965799 None:intergenic 25.0%
!! TCATTGAATTGAAAAGTATG+AGG - chr3_4:68965872-68965891 None:intergenic 25.0%
! TACAGCATTTATCCTTTAAA+TGG - chr3_4:68965993-68966012 None:intergenic 25.0%
! AAAAAATTACATGTCAAACG+AGG - chr3_4:68966063-68966082 None:intergenic 25.0%
! TAGCTTACATTCTTAGTAAT+TGG + chr3_4:68966138-68966157 Msa0517370:intron 25.0%
! TTACATTCTTAGTAATTGGA+TGG + chr3_4:68966142-68966161 Msa0517370:intron 25.0%
! CAAGTAAAATAAAAACCGAA+AGG - chr3_4:68966257-68966276 None:intergenic 25.0%
!!! AAAACAGAAACACTACTTTT+AGG - chr3_4:68966447-68966466 None:intergenic 25.0%
! AAGCTTGAGAATATGAAAAT+TGG - chr3_4:68966654-68966673 None:intergenic 25.0%
!!! GTTGGTTTTATTAACAGAAA+CGG - chr3_4:68966902-68966921 None:intergenic 25.0%
! AACAAAAAATCAATACCTCT+GGG - chr3_4:68967002-68967021 None:intergenic 25.0%
! AAACAAAAAATCAATACCTC+TGG - chr3_4:68967003-68967022 None:intergenic 25.0%
! AATTGAAACAAATGTCTTCA+AGG + chr3_4:68967145-68967164 Msa0517370:three_prime_UTR 25.0%
!! GAATTAATTTCAAGTCTAAC+AGG - chr3_4:68967193-68967212 None:intergenic 25.0%
! AATGTGATTGAAAATTGTCA+AGG + chr3_4:68967224-68967243 Msa0517370:three_prime_UTR 25.0%
! TTCAATTGTTCTGTACTTAA+TGG + chr3_4:68967330-68967349 Msa0517370:three_prime_UTR 25.0%
! GAGAAATGTTATTGAATAGA+AGG - chr3_4:68967358-68967377 None:intergenic 25.0%
GTTCAAAAAGGAAATCTCTA+CGG - chr3_4:68964021-68964040 None:intergenic 30.0%
GAAAAAAAAAAGAAGACGAC+GGG + chr3_4:68964117-68964136 Msa0517370:five_prime_UTR 30.0%
!!! GAACTTGTTTTTATAGATCG+TGG + chr3_4:68964558-68964577 Msa0517370:intron 30.0%
!! TTTGATTTGATTCAGGATTC+TGG + chr3_4:68964582-68964601 Msa0517370:intron 30.0%
! TGCTCAATTAAATCTTTTCC+AGG + chr3_4:68964708-68964727 Msa0517370:CDS 30.0%
!! TACTTGTTGTGAAGCTTAAA+TGG + chr3_4:68964829-68964848 Msa0517370:intron 30.0%
!! ACTTGTTGTGAAGCTTAAAT+GGG + chr3_4:68964830-68964849 Msa0517370:intron 30.0%
TCATATGAAGATTCTGTTCA+AGG + chr3_4:68965162-68965181 Msa0517370:CDS 30.0%
CATATGAAGATTCTGTTCAA+GGG + chr3_4:68965163-68965182 Msa0517370:CDS 30.0%
TGGGCCTTCAAAAAAAAAAA+GGG + chr3_4:68965234-68965253 Msa0517370:intron 30.0%
!!! GACTCCCTTTTTTTTTTTGA+AGG - chr3_4:68965241-68965260 None:intergenic 30.0%
!!! TTTTTTTTCCATTGGGCTAT+TGG + chr3_4:68965303-68965322 Msa0517370:intron 30.0%
!! TGGCAGTTCATTTTTCAAAA+TGG + chr3_4:68965343-68965362 Msa0517370:intron 30.0%
TGGAAACCAAGTTCAATTAA+AGG - chr3_4:68965383-68965402 None:intergenic 30.0%
TAAAGTGTAGCATATTAGCA+TGG - chr3_4:68965586-68965605 None:intergenic 30.0%
TCAGGGTTAAACTAAGTAAA+TGG - chr3_4:68965676-68965695 None:intergenic 30.0%
AGTCTCTTAAATTTGGTAGA+TGG + chr3_4:68965742-68965761 Msa0517370:intron 30.0%
GTCTCTTAAATTTGGTAGAT+GGG + chr3_4:68965743-68965762 Msa0517370:intron 30.0%
TATTAATATTTGAGCCTACG+TGG + chr3_4:68965923-68965942 Msa0517370:intron 30.0%
!! CAGCTCATTTAGTTTGTAAT+TGG - chr3_4:68966017-68966036 None:intergenic 30.0%
CAATTACAAACTAAATGAGC+TGG + chr3_4:68966015-68966034 Msa0517370:intron 30.0%
TTGGATGGTATATTAACACT+TGG + chr3_4:68966157-68966176 Msa0517370:intron 30.0%
! TTCATTCATTTGGAAAGTGT+GGG + chr3_4:68966187-68966206 Msa0517370:intron 30.0%
ATGTACAACGATTTGAAAAC+TGG - chr3_4:68966415-68966434 None:intergenic 30.0%
ATGAAAATGTTGCATTTGCA+TGG - chr3_4:68966722-68966741 None:intergenic 30.0%
ATGTTGTCAAGTGATTCTAT+CGG + chr3_4:68966814-68966833 Msa0517370:CDS 30.0%
!! GTTTTATTAACAGAAACGGA+GGG - chr3_4:68966898-68966917 None:intergenic 30.0%
TATGAACAACCCAATAAACA+GGG - chr3_4:68966962-68966981 None:intergenic 30.0%
TTGTGCATAAATGACCATAA+TGG - chr3_4:68967258-68967277 None:intergenic 30.0%
ATTATCGGAATCGATGTAAG+AGG - chr3_4:68964324-68964343 None:intergenic 35.0%
!! TACATCGATTCCGATAATTC+CGG + chr3_4:68964326-68964345 Msa0517370:CDS 35.0%
CAACAAGGAAGAAGATGTAT+CGG - chr3_4:68964408-68964427 None:intergenic 35.0%
CACAATTGAGCAAGTTTATC+AGG - chr3_4:68964464-68964483 None:intergenic 35.0%
! CTGATAAACTTGCTCAATTG+TGG + chr3_4:68964462-68964481 Msa0517370:CDS 35.0%
GCATTAAAAGAAAGACCTCT+TGG - chr3_4:68964507-68964526 None:intergenic 35.0%
!! TCGTGGATTTGATTTGATTC+AGG + chr3_4:68964575-68964594 Msa0517370:intron 35.0%
TTATGGTAAACCGTTATGGA+AGG + chr3_4:68965075-68965094 Msa0517370:intron 35.0%
GTGGGCCTTCAAAAAAAAAA+AGG + chr3_4:68965233-68965252 Msa0517370:intron 35.0%
GAAATCCCACCACTAATATA+AGG - chr3_4:68965418-68965437 None:intergenic 35.0%
!!! CTTTTTCAGAGAGATACAAC+TGG + chr3_4:68965478-68965497 Msa0517370:intron 35.0%
! AAAATACCGAGTTGAAGCTT+CGG + chr3_4:68965512-68965531 Msa0517370:CDS 35.0%
GGCCTTTCATATTATACTGA+TGG - chr3_4:68965655-68965674 None:intergenic 35.0%
CCGATGCTTACATTAATTCA+GGG - chr3_4:68965693-68965712 None:intergenic 35.0%
CCCTGAATTAATGTAAGCAT+CGG + chr3_4:68965690-68965709 Msa0517370:intron 35.0%
ACCGATGCTTACATTAATTC+AGG - chr3_4:68965694-68965713 None:intergenic 35.0%
TGACATGGTAGTCCATTTAA+AGG + chr3_4:68965978-68965997 Msa0517370:intron 35.0%
TGGTCTAGACTTCATTCATT+TGG + chr3_4:68966177-68966196 Msa0517370:intron 35.0%
CTTCATTCATTTGGAAAGTG+TGG + chr3_4:68966186-68966205 Msa0517370:intron 35.0%
GAAGTAGTGATAGATGAACA+TGG - chr3_4:68966335-68966354 None:intergenic 35.0%
!!! GGTTTTGATTCATGGTTCAT+TGG - chr3_4:68966371-68966390 None:intergenic 35.0%
!!! GTAGTGAAGGTTTTGATTCA+TGG - chr3_4:68966379-68966398 None:intergenic 35.0%
ACTAGTCATTGAAGTAGTGA+AGG - chr3_4:68966392-68966411 None:intergenic 35.0%
! CATTGAAGAACGAAGTTGAT+AGG + chr3_4:68966569-68966588 Msa0517370:CDS 35.0%
TTTCATTCCCTCTCATCTAA+TGG + chr3_4:68966736-68966755 Msa0517370:CDS 35.0%
!!! GGTTTTATTAACAGAAACGG+AGG - chr3_4:68966899-68966918 None:intergenic 35.0%
ATGTCACTACCCTGTTTATT+GGG + chr3_4:68966950-68966969 Msa0517370:three_prime_UTR 35.0%
CTATGAACAACCCAATAAAC+AGG - chr3_4:68966963-68966982 None:intergenic 35.0%
! TATTTGATTGAGGGTGTATG+TGG + chr3_4:68967038-68967057 Msa0517370:three_prime_UTR 35.0%
TGAAACAAATGTCTTCAAGG+TGG + chr3_4:68967148-68967167 Msa0517370:three_prime_UTR 35.0%
TCAAGGTACATGATCCATTA+TGG + chr3_4:68967241-68967260 Msa0517370:three_prime_UTR 35.0%
GAGTTTGGATCCGGAATTAT+CGG - chr3_4:68964339-68964358 None:intergenic 40.0%
AGGAGAATTGAGTTTGGATC+CGG - chr3_4:68964348-68964367 None:intergenic 40.0%
! TCTTCTTCCTTGTTGTCTGA+AGG + chr3_4:68964413-68964432 Msa0517370:CDS 40.0%
TTCGATTCCTTCAGACAACA+AGG - chr3_4:68964423-68964442 None:intergenic 40.0%
!! AGAGAGGAAAGCTTGTTATG+TGG + chr3_4:68964633-68964652 Msa0517370:CDS 40.0%
GTTATGTGGTTGAGCTTGAA+AGG + chr3_4:68964647-68964666 Msa0517370:CDS 40.0%
GGCAATGATGAGTAATAACC+TGG - chr3_4:68964729-68964748 None:intergenic 40.0%
AGTGATAAATCCGATCAGAG+AGG + chr3_4:68964879-68964898 Msa0517370:CDS 40.0%
ATAAATCCGATCAGAGAGGT+AGG + chr3_4:68964883-68964902 Msa0517370:CDS 40.0%
ATTCAACCTACCTCTCTGAT+CGG - chr3_4:68964892-68964911 None:intergenic 40.0%
! ATCAGAGAGGTAGGTTGAAT+TGG + chr3_4:68964892-68964911 Msa0517370:CDS 40.0%
TACCGTTTGTGTAATGCGTA+TGG + chr3_4:68965023-68965042 Msa0517370:intron 40.0%
CACCATACGCATTACACAAA+CGG - chr3_4:68965028-68965047 None:intergenic 40.0%
! TTTGAGGTTGCCTTCCATAA+CGG - chr3_4:68965088-68965107 None:intergenic 40.0%
TTATGGAAGGCAACCTCAAA+CGG + chr3_4:68965088-68965107 Msa0517370:intron 40.0%
TTTCTTCCACGTAGTTGTTG+TGG + chr3_4:68965112-68965131 Msa0517370:intron 40.0%
AGTTGTTGTGGCCATTAATG+AGG + chr3_4:68965124-68965143 Msa0517370:intron 40.0%
GTTGTTGTGGCCATTAATGA+GGG + chr3_4:68965125-68965144 Msa0517370:intron 40.0%
GAATTGGACTCCATATTCAC+AGG + chr3_4:68965206-68965225 Msa0517370:CDS 40.0%
AAAGCAAACCAATAGCCCAA+TGG - chr3_4:68965314-68965333 None:intergenic 40.0%
!!! TGGTTTGCTTTTCACTCTTG+TGG + chr3_4:68965323-68965342 Msa0517370:intron 40.0%
TTGTAACCGAAGCTTCAACT+CGG - chr3_4:68965521-68965540 None:intergenic 40.0%
CAACAAGCTAAGCTATGTGA+TGG + chr3_4:68965550-68965569 Msa0517370:CDS 40.0%
CAGCAAAACAAGAAGAAACG+AGG - chr3_4:68965612-68965631 None:intergenic 40.0%
!!! CTCGTTTCTTCTTGTTTTGC+TGG + chr3_4:68965610-68965629 Msa0517370:intron 40.0%
! ATTTGAGCCTACGTGGATTA+TGG + chr3_4:68965930-68965949 Msa0517370:intron 40.0%
TCACAAACCATAATCCACGT+AGG - chr3_4:68965940-68965959 None:intergenic 40.0%
CTACAGTGATTGAAGCCTTT+CGG + chr3_4:68966239-68966258 Msa0517370:intron 40.0%
CAAACCATAGGTATCAGCAT+GGG - chr3_4:68966623-68966642 None:intergenic 40.0%
CATGCTGATACCTATGGTTT+GGG + chr3_4:68966622-68966641 Msa0517370:CDS 40.0%
AACATGGTCCAAACGATCTT+AGG + chr3_4:68966695-68966714 Msa0517370:CDS 40.0%
ACATGGTCCAAACGATCTTA+GGG + chr3_4:68966696-68966715 Msa0517370:CDS 40.0%
ACTGGATCCATTAGATGAGA+GGG - chr3_4:68966746-68966765 None:intergenic 40.0%
! ACCCACTTCGTATGATTTGT+CGG + chr3_4:68966789-68966808 Msa0517370:CDS 40.0%
TCCGACAAATCATACGAAGT+GGG - chr3_4:68966793-68966812 None:intergenic 40.0%
TTCCGACAAATCATACGAAG+TGG - chr3_4:68966794-68966813 None:intergenic 40.0%
TGATTCTATCGGCCAATTTC+AGG + chr3_4:68966825-68966844 Msa0517370:CDS 40.0%
GATTCTATCGGCCAATTTCA+GGG + chr3_4:68966826-68966845 Msa0517370:CDS 40.0%
ATTCTATCGGCCAATTTCAG+GGG + chr3_4:68966827-68966846 Msa0517370:CDS 40.0%
!! TTTGCATCAAAAGGCGTTGT+TGG - chr3_4:68966920-68966939 None:intergenic 40.0%
CATGTCACTACCCTGTTTAT+TGG + chr3_4:68966949-68966968 Msa0517370:three_prime_UTR 40.0%
ATTTCGAGGTCGAAATCGTC+GGG - chr3_4:68964224-68964243 None:intergenic 45.0%
CATTTCGAGGTCGAAATCGT+CGG - chr3_4:68964225-68964244 None:intergenic 45.0%
CGGAATCGATGTAAGAGGAA+AGG - chr3_4:68964319-68964338 None:intergenic 45.0%
! ATGTATCGGCGGAATTGCTA+CGG - chr3_4:68964394-68964413 None:intergenic 45.0%
CAAGGAAGAAGATGTATCGG+CGG - chr3_4:68964405-68964424 None:intergenic 45.0%
CGTCTGTAGCGATGAGATTA+GGG + chr3_4:68964922-68964941 Msa0517370:CDS 45.0%
GTCTGTAGCGATGAGATTAG+GGG + chr3_4:68964923-68964942 Msa0517370:CDS 45.0%
AGCACTCTGACGCTTAAGTT+AGG + chr3_4:68964957-68964976 Msa0517370:intron 45.0%
GCACTCTGACGCTTAAGTTA+GGG + chr3_4:68964958-68964977 Msa0517370:intron 45.0%
GGGGTTATGGTAAACCGTTA+TGG + chr3_4:68965071-68965090 Msa0517370:intron 45.0%
ACGTGGAAGAAATCCGTTTG+AGG - chr3_4:68965104-68965123 None:intergenic 45.0%
TAATGGCCACAACAACTACG+TGG - chr3_4:68965121-68965140 None:intergenic 45.0%
TTGTGGCCATTAATGAGGGT+TGG + chr3_4:68965129-68965148 Msa0517370:CDS 45.0%
TGTGGCCATTAATGAGGGTT+GGG + chr3_4:68965130-68965149 Msa0517370:CDS 45.0%
AACGTCCCAACCCTCATTAA+TGG - chr3_4:68965138-68965157 None:intergenic 45.0%
TAATGAGGGTTGGGACGTTA+TGG + chr3_4:68965139-68965158 Msa0517370:CDS 45.0%
TGTTCAAGGGAATCTGTGTG+TGG + chr3_4:68965176-68965195 Msa0517370:CDS 45.0%
GTTCAAGGGAATCTGTGTGT+GGG + chr3_4:68965177-68965196 Msa0517370:CDS 45.0%
TTGGACTCCATATTCACAGG+TGG + chr3_4:68965209-68965228 Msa0517370:intron 45.0%
TCCATATTCACAGGTGGAGT+GGG + chr3_4:68965215-68965234 Msa0517370:intron 45.0%
! ATAGGGCAACTGTTCTGGAT+TGG - chr3_4:68965271-68965290 None:intergenic 45.0%
AAAGGATAGGGCAACTGTTC+TGG - chr3_4:68965276-68965295 None:intergenic 45.0%
AGAACAGTTGCCCTATCCTT+TGG + chr3_4:68965275-68965294 Msa0517370:intron 45.0%
GAAGCTTCGGTTACAAACCA+TGG + chr3_4:68965525-68965544 Msa0517370:CDS 45.0%
!! TAGCTTAGCTTGTTGCTCCA+TGG - chr3_4:68965545-68965564 None:intergenic 45.0%
GTCAACTGTCTCAGATGACA+TGG + chr3_4:68965963-68965982 Msa0517370:intron 45.0%
CCAAACCATAGGTATCAGCA+TGG - chr3_4:68966624-68966643 None:intergenic 45.0%
CCATGCTGATACCTATGGTT+TGG + chr3_4:68966621-68966640 Msa0517370:CDS 45.0%
TTGGTGCATTCCCAAACCAT+AGG - chr3_4:68966635-68966654 None:intergenic 45.0%
! ATGTTGTGGTTGGTGCATGA+AGG - chr3_4:68966680-68966699 None:intergenic 45.0%
TTCATGCACCAACCACAACA+TGG + chr3_4:68966679-68966698 Msa0517370:CDS 45.0%
AGATCGTTTGGACCATGTTG+TGG - chr3_4:68966694-68966713 None:intergenic 45.0%
GACTGGATCCATTAGATGAG+AGG - chr3_4:68966747-68966766 None:intergenic 45.0%
TAGATCAAACTGAGGCTGGT+GGG - chr3_4:68966770-68966789 None:intergenic 45.0%
GAAGTGGGTAGATCAAACTG+AGG - chr3_4:68966778-68966797 None:intergenic 45.0%
TCTCATGTTCTGATGCCTGA+TGG + chr3_4:68966871-68966890 Msa0517370:CDS 45.0%
!!! ATAATTATTATTTTTAAAAC+TGG - chr3_4:68966523-68966542 None:intergenic 5.0%
TGAGAGAGAGAGAGAGAGAG+CGG + chr3_4:68964091-68964110 Msa0517370:five_prime_UTR 50.0%
GAAGACGACGGGATTCAAAC+CGG + chr3_4:68964128-68964147 Msa0517370:five_prime_UTR 50.0%
ATTGAGATCGACGGTGGAAC+GGG - chr3_4:68964181-68964200 None:intergenic 50.0%
GATTGAGATCGACGGTGGAA+CGG - chr3_4:68964182-68964201 None:intergenic 50.0%
GTTCCACCGTCGATCTCAAT+CGG + chr3_4:68964181-68964200 Msa0517370:CDS 50.0%
GTACCTCCGATTGAGATCGA+CGG - chr3_4:68964190-68964209 None:intergenic 50.0%
TTTCGAGGTCGAAATCGTCG+GGG - chr3_4:68964223-68964242 None:intergenic 50.0%
CGACGATTTCGACCTCGAAA+TGG + chr3_4:68964223-68964242 Msa0517370:CDS 50.0%
AGTCGAAGGGATCCATTTCG+AGG - chr3_4:68964238-68964257 None:intergenic 50.0%
! AGGAGATCGTCGTGTTGTTG+CGG - chr3_4:68964299-68964318 None:intergenic 50.0%
GGCGGTAGGAGAATTGAGTT+TGG - chr3_4:68964354-68964373 None:intergenic 50.0%
! CTTGGCGCGTTTAGGATCAA+CGG - chr3_4:68964489-68964508 None:intergenic 50.0%
TTGATCCTAAACGCGCCAAG+AGG + chr3_4:68964489-68964508 Msa0517370:CDS 50.0%
AAAGACCTCTTGGCGCGTTT+AGG - chr3_4:68964497-68964516 None:intergenic 50.0%
GCGTCTGTAGCGATGAGATT+AGG + chr3_4:68964921-68964940 Msa0517370:CDS 50.0%
TGTAGCGATGAGATTAGGGG+TGG + chr3_4:68964926-68964945 Msa0517370:CDS 50.0%
GCGTATGGTGCATATGTCGA+AGG + chr3_4:68965038-68965057 Msa0517370:intron 50.0%
GCATATGTCGAAGGAATCCC+AGG + chr3_4:68965047-68965066 Msa0517370:intron 50.0%
TATGTCGAAGGAATCCCAGG+AGG + chr3_4:68965050-68965069 Msa0517370:intron 50.0%
ATGTCGAAGGAATCCCAGGA+GGG + chr3_4:68965051-68965070 Msa0517370:intron 50.0%
GGTTTACCATAACCCCTCCT+GGG - chr3_4:68965067-68965086 None:intergenic 50.0%
TGTGTGTGGGAACGTCGAAT+TGG + chr3_4:68965190-68965209 Msa0517370:CDS 50.0%
CTCCATATTCACAGGTGGAG+TGG + chr3_4:68965214-68965233 Msa0517370:intron 50.0%
TGCAACGACTTGAGCTGACA+TGG - chr3_4:68966095-68966114 None:intergenic 50.0%
!! GATAGGCTCAAGCTTGCTAC+TGG + chr3_4:68966586-68966605 Msa0517370:CDS 50.0%
CCATAGGTATCAGCATGGGT+TGG - chr3_4:68966619-68966638 None:intergenic 50.0%
CCAACCCATGCTGATACCTA+TGG + chr3_4:68966616-68966635 Msa0517370:CDS 50.0%
CGTTTGGACCATGTTGTGGT+TGG - chr3_4:68966690-68966709 None:intergenic 50.0%
TGCATGGCCCTAAGATCGTT+TGG - chr3_4:68966706-68966725 None:intergenic 50.0%
AGATCAAACTGAGGCTGGTG+GGG - chr3_4:68966769-68966788 None:intergenic 50.0%
GTAGATCAAACTGAGGCTGG+TGG - chr3_4:68966771-68966790 None:intergenic 50.0%
TGGGTAGATCAAACTGAGGC+TGG - chr3_4:68966774-68966793 None:intergenic 50.0%
CAATGTCCAGCCCCTGAAAT+TGG - chr3_4:68966840-68966859 None:intergenic 50.0%
CAATTTCAGGGGCTGGACAT+TGG + chr3_4:68966838-68966857 Msa0517370:CDS 50.0%
CGACGGGATTCAAACCGGAT+CGG + chr3_4:68964133-68964152 Msa0517370:five_prime_UTR 55.0%
CATCGTTGCGGTTACCGATC+CGG - chr3_4:68964150-68964169 None:intergenic 55.0%
GGTCGAAATCGTCGGGGATT+CGG - chr3_4:68964217-68964236 None:intergenic 55.0%
!! GGAGAAGCGTCGAAGTCGAA+GGG - chr3_4:68964251-68964270 None:intergenic 55.0%
GGTGGATCTTGGAACTGGAG+CGG - chr3_4:68964272-68964291 None:intergenic 55.0%
!! GTGGTGGTGGATCTTGGAAC+TGG - chr3_4:68964277-68964296 None:intergenic 55.0%
! AGATCGTCGTGTTGTTGCGG+TGG - chr3_4:68964296-68964315 None:intergenic 55.0%
TATCGGCGGAATTGCTACGG+CGG - chr3_4:68964391-68964410 None:intergenic 55.0%
TCTGGCGAATCGTCAATCCG+CGG + chr3_4:68964600-68964619 Msa0517370:CDS 55.0%
TGTCGAAGGAATCCCAGGAG+GGG + chr3_4:68965052-68965071 Msa0517370:intron 55.0%
AGGAATCCCAGGAGGGGTTA+TGG + chr3_4:68965058-68965077 Msa0517370:intron 55.0%
CGGTTTACCATAACCCCTCC+TGG - chr3_4:68965068-68965087 None:intergenic 55.0%
GCCCACTCCACCTGTGAATA+TGG - chr3_4:68965219-68965238 None:intergenic 55.0%
!! GCTCAAGCTTGCTACTGGAG+AGG + chr3_4:68966591-68966610 Msa0517370:CDS 55.0%
TATCGGCCAATTTCAGGGGC+TGG + chr3_4:68966831-68966850 Msa0517370:CDS 55.0%
ACAGAAACGGAGGGACCATC+AGG - chr3_4:68966889-68966908 None:intergenic 55.0%
TTGACACGAGTGAGACCCAG+AGG + chr3_4:68966984-68967003 Msa0517370:three_prime_UTR 55.0%
CTCTCTCACACACACTCGCG+CGG - chr3_4:68964079-68964098 None:intergenic 60.0%
CGGGAACGACGACATCGTTG+CGG - chr3_4:68964162-68964181 None:intergenic 60.0%
CCTCCGATTGAGATCGACGG+TGG - chr3_4:68964187-68964206 None:intergenic 60.0%
CCACCGTCGATCTCAATCGG+AGG + chr3_4:68964184-68964203 Msa0517370:CDS 60.0%
!! CGGAGAAGCGTCGAAGTCGA+AGG - chr3_4:68964252-68964271 None:intergenic 60.0%
!! GTTGCGGTGGTGGTGGATCT+TGG - chr3_4:68964283-68964302 None:intergenic 60.0%
! TCGTGTTGTTGCGGTGGTGG+TGG - chr3_4:68964290-68964309 None:intergenic 60.0%
! TCGTCGTGTTGTTGCGGTGG+TGG - chr3_4:68964293-68964312 None:intergenic 60.0%
TCTCCTACCGCCGCTAATGC+CGG + chr3_4:68964362-68964381 Msa0517370:CDS 60.0%
GGAATTGCTACGGCGGTGAC+CGG - chr3_4:68964384-68964403 None:intergenic 60.0%
AAACTGAGGCTGGTGGGGAC+TGG - chr3_4:68966764-68966783 None:intergenic 60.0%
AGGGGCTGGACATTGGCAAC+AGG + chr3_4:68966845-68966864 Msa0517370:CDS 60.0%
GGGGCTGGACATTGGCAACA+GGG + chr3_4:68966846-68966865 Msa0517370:CDS 60.0%
TGACCGGCATTAGCGGCGGT+AGG - chr3_4:68964368-68964387 None:intergenic 65.0%
ACGGCGGTGACCGGCATTAG+CGG - chr3_4:68964375-68964394 None:intergenic 65.0%
CGAATCGTCAATCCGCGGCG+AGG + chr3_4:68964605-68964624 Msa0517370:CDS 65.0%
CCTCTCTTTCGACCTCGCCG+CGG - chr3_4:68964620-68964639 None:intergenic 65.0%
GCGGTGACCGGCATTAGCGG+CGG - chr3_4:68964372-68964391 None:intergenic 70.0%
CCGCGGCGAGGTCGAAAGAG+AGG + chr3_4:68964617-68964636 Msa0517370:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 68963985 68967383 68963985 ID=Msa0517370;Name=Msa0517370
chr3_4 mRNA 68963985 68967383 68963985 ID=Msa0517370-mRNA-1;Parent=Msa0517370;Name=Msa0517370-mRNA-1;_AED=0.09;_eAED=0.11;_QI=182|0.4|0.66|1|1|1|6|450|375
chr3_4 exon 68963985 68964510 68963985 ID=Msa0517370-mRNA-1:exon:18291;Parent=Msa0517370-mRNA-1
chr3_4 exon 68964597 68964729 68964597 ID=Msa0517370-mRNA-1:exon:18292;Parent=Msa0517370-mRNA-1
chr3_4 exon 68964861 68964947 68964861 ID=Msa0517370-mRNA-1:exon:18293;Parent=Msa0517370-mRNA-1
chr3_4 exon 68965126 68965227 68965126 ID=Msa0517370-mRNA-1:exon:18294;Parent=Msa0517370-mRNA-1
chr3_4 exon 68965487 68965571 68965487 ID=Msa0517370-mRNA-1:exon:18295;Parent=Msa0517370-mRNA-1
chr3_4 exon 68966557 68967383 68966557 ID=Msa0517370-mRNA-1:exon:18296;Parent=Msa0517370-mRNA-1
chr3_4 five_prime_UTR 68963985 68964166 68963985 ID=Msa0517370-mRNA-1:five_prime_utr;Parent=Msa0517370-mRNA-1
chr3_4 CDS 68964167 68964510 68964167 ID=Msa0517370-mRNA-1:cds;Parent=Msa0517370-mRNA-1
chr3_4 CDS 68964597 68964729 68964597 ID=Msa0517370-mRNA-1:cds;Parent=Msa0517370-mRNA-1
chr3_4 CDS 68964861 68964947 68964861 ID=Msa0517370-mRNA-1:cds;Parent=Msa0517370-mRNA-1
chr3_4 CDS 68965126 68965227 68965126 ID=Msa0517370-mRNA-1:cds;Parent=Msa0517370-mRNA-1
chr3_4 CDS 68965487 68965571 68965487 ID=Msa0517370-mRNA-1:cds;Parent=Msa0517370-mRNA-1
chr3_4 CDS 68966557 68966933 68966557 ID=Msa0517370-mRNA-1:cds;Parent=Msa0517370-mRNA-1
chr3_4 three_prime_UTR 68966934 68967383 68966934 ID=Msa0517370-mRNA-1:three_prime_utr;Parent=Msa0517370-mRNA-1
Gene Sequence

>Msa0517370

ATGTCGTCGTTCCCGTTCCACCGTCGATCTCAATCGGAGGTACATTTCCGAATCCCCGACGATTTCGACCTCGAAATGGATCCCTTCGACTTCGACGCTTCTCCGCTCCAGTTCCAAGATCCACCACCACCGCAACAACACGACGATCTCCTTTCCTCTTACATCGATTCCGATAATTCCGGATCCAAACTCAATTCTCCTACCGCCGCTAATGCCGGTCACCGCCGTAGCAATTCCGCCGATACATCTTCTTCCTTGTTGTCTGAAGGAATCGAATCTAAGAAAGCTATGTCTCCTGATAAACTTGCTCAATTGTGGACCGTTGATCCTAAACGCGCCAAGAGGATTCTGGCGAATCGTCAATCCGCGGCGAGGTCGAAAGAGAGGAAAGCTTGTTATGTGGTTGAGCTTGAAAGGAAAATTCATACTCTTCAAACTGAAGCAACTACTCTTTCTGCTCAATTAAATCTTTTCCAGTTAATGTCAAGAATAGTAAGTGATAAATCCGATCAGAGAGGTAGGTTGAATTGGAGAGAAGCGTCTGTAGCGATGAGATTAGGGGTGTTGTTGTGGCCATTAATGAGGGTTGGGACGTTATGGTCATATGAAGATTCTGTTCAAGGGAATCTGTGTGTGGGAACGTCGAATTGGACTCCATATTCACAGAGAGATACAACTGGTCTGTCAAGTGAAAATACCGAGTTGAAGCTTCGGTTACAAACCATGGAGCAACAAGCTAAGCTATGTGATGCTCTAAATGAAGCATTGAAGAACGAAGTTGATAGGCTCAAGCTTGCTACTGGAGAGGTACCAACCCATGCTGATACCTATGGTTTGGGAATGCACCAATTTTCATATTCTCAAGCTTCATCCTTCATGCACCAACCACAACATGGTCCAAACGATCTTAGGGCCATGCAAATGCAACATTTTCATTCCCTCTCATCTAATGGATCCAGTCCCCACCAGCCTCAGTTTGATCTACCCACTTCGTATGATTTGTCGGAAATGTTGTCAAGTGATTCTATCGGCCAATTTCAGGGGCTGGACATTGGCAACAGGGTTTCTCATGTTCTGATGCCTGATGGTCCCTCCGTTTCTGTTAATAAAACCAACAACGCCTTTTGA
Protein sequence

>Msa0517370

MSSFPFHRRSQSEVHFRIPDDFDLEMDPFDFDASPLQFQDPPPPQQHDDLLSSYIDSDNSGSKLNSPTAANAGHRRSNSADTSSSLLSEGIESKKAMSPDKLAQLWTVDPKRAKRILANRQSAARSKERKACYVVELERKIHTLQTEATTLSAQLNLFQLMSRIVSDKSDQRGRLNWREASVAMRLGVLLWPLMRVGTLWSYEDSVQGNLCVGTSNWTPYSQRDTTGLSSENTELKLRLQTMEQQAKLCDALNEALKNEVDRLKLATGEVPTHADTYGLGMHQFSYSQASSFMHQPQHGPNDLRAMQMQHFHSLSSNGSSPHQPQFDLPTSYDLSEMLSSDSIGQFQGLDIGNRVSHVLMPDGPSVSVNKTNNAF*