Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386960 | XP_013461513.1 | 73.867 | 375 | 34 | 6 | 1 | 375 | 1 | 311 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386960 | sp|O22873|BZP18_ARATH | 35.533 | 394 | 127 | 15 | 5 | 351 | 32 | 345 | 3.12e-44 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386960 | A0A072V2G2 | 73.867 | 375 | 34 | 6 | 1 | 375 | 1 | 311 | 0.0 | 521 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1386960 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0517370 | Msa1386960 | 0.966311 | 9.442140e-126 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386960 | MtrunA17_Chr3g0128781 | 73.867 | 375 | 34 | 6 | 1 | 375 | 1 | 311 | 0.0 | 521 |
| Msa1386960 | MtrunA17_Chr5g0432701 | 40.526 | 380 | 143 | 11 | 7 | 375 | 51 | 358 | 4.53e-69 | 221 |
| Msa1386960 | MtrunA17_Chr3g0107491 | 46.875 | 192 | 61 | 6 | 7 | 159 | 38 | 227 | 3.71e-38 | 140 |
| Msa1386960 | MtrunA17_Chr3g0107491 | 46.835 | 158 | 73 | 5 | 222 | 375 | 227 | 377 | 8.34e-35 | 131 |
| Msa1386960 | MtrunA17_Chr6g0463571 | 46.591 | 176 | 69 | 6 | 7 | 159 | 28 | 201 | 1.57e-29 | 115 |
| Msa1386960 | MtrunA17_Chr2g0329551 | 37.975 | 237 | 79 | 8 | 7 | 185 | 72 | 298 | 2.59e-26 | 109 |
| Msa1386960 | MtrunA17_Chr4g0036071 | 57.732 | 97 | 40 | 1 | 90 | 185 | 341 | 437 | 5.00e-23 | 100 |
| Msa1386960 | MtrunA17_Chr1g0156051 | 70.000 | 50 | 15 | 0 | 92 | 141 | 370 | 419 | 6.38e-14 | 73.2 |
| Msa1386960 | MtrunA17_Chr1g0202051 | 33.588 | 131 | 75 | 2 | 24 | 154 | 51 | 169 | 1.06e-11 | 65.1 |
| Msa1386960 | MtrunA17_Chr2g0316551 | 57.692 | 52 | 22 | 0 | 107 | 158 | 206 | 257 | 7.94e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386960 | AT2G40620.1 | 35.533 | 394 | 127 | 15 | 5 | 351 | 32 | 345 | 3.17e-45 | 159 |
| Msa1386960 | AT1G06850.2 | 60.606 | 99 | 36 | 2 | 78 | 175 | 116 | 212 | 2.76e-30 | 116 |
| Msa1386960 | AT1G06850.1 | 54.545 | 110 | 48 | 2 | 78 | 185 | 116 | 225 | 3.38e-29 | 115 |
| Msa1386960 | AT1G06850.1 | 40.361 | 166 | 72 | 4 | 205 | 364 | 182 | 326 | 5.12e-26 | 107 |
| Msa1386960 | AT1G43700.1 | 38.723 | 235 | 65 | 7 | 70 | 290 | 142 | 311 | 4.09e-29 | 115 |
| Msa1386960 | AT2G31370.5 | 41.206 | 199 | 66 | 7 | 7 | 159 | 58 | 251 | 2.37e-27 | 111 |
| Msa1386960 | AT2G31370.2 | 41.206 | 199 | 66 | 7 | 7 | 159 | 58 | 251 | 2.93e-27 | 111 |
| Msa1386960 | AT2G31370.4 | 41.206 | 199 | 66 | 7 | 7 | 159 | 58 | 251 | 2.93e-27 | 111 |
| Msa1386960 | AT2G31370.1 | 41.206 | 199 | 66 | 7 | 7 | 159 | 58 | 251 | 2.93e-27 | 111 |
| Msa1386960 | AT2G31370.7 | 41.206 | 199 | 66 | 7 | 7 | 159 | 58 | 251 | 2.93e-27 | 111 |
| Msa1386960 | AT2G31370.3 | 41.206 | 199 | 66 | 7 | 7 | 159 | 58 | 251 | 2.93e-27 | 111 |
| Msa1386960 | AT2G31370.6 | 41.206 | 199 | 66 | 7 | 7 | 159 | 58 | 251 | 2.93e-27 | 111 |
| Msa1386960 | AT1G06070.1 | 41.146 | 192 | 70 | 6 | 7 | 159 | 73 | 260 | 2.90e-26 | 109 |
| Msa1386960 | AT4G38900.2 | 62.069 | 87 | 30 | 1 | 92 | 178 | 377 | 460 | 6.63e-23 | 100 |
| Msa1386960 | AT4G38900.2 | 70.833 | 48 | 14 | 0 | 222 | 269 | 444 | 491 | 5.42e-13 | 70.5 |
| Msa1386960 | AT4G38900.3 | 62.069 | 87 | 30 | 1 | 92 | 178 | 377 | 460 | 6.63e-23 | 100 |
| Msa1386960 | AT4G38900.3 | 70.833 | 48 | 14 | 0 | 222 | 269 | 444 | 491 | 5.42e-13 | 70.5 |
| Msa1386960 | AT4G38900.1 | 58.065 | 93 | 30 | 2 | 92 | 178 | 377 | 466 | 1.13e-20 | 94.0 |
| Msa1386960 | AT4G38900.1 | 70.833 | 48 | 14 | 0 | 222 | 269 | 450 | 497 | 5.32e-13 | 70.9 |
| Msa1386960 | AT2G21230.2 | 46.032 | 126 | 66 | 2 | 66 | 190 | 328 | 452 | 1.48e-20 | 93.2 |
| Msa1386960 | AT2G21230.3 | 46.774 | 124 | 64 | 2 | 66 | 188 | 328 | 450 | 1.82e-20 | 93.2 |
| Msa1386960 | AT2G21230.4 | 47.107 | 121 | 62 | 2 | 66 | 185 | 328 | 447 | 5.24e-20 | 92.0 |
| Msa1386960 | AT2G21230.4 | 64.583 | 48 | 17 | 0 | 222 | 269 | 420 | 467 | 2.53e-11 | 65.5 |
| Msa1386960 | AT2G21230.1 | 47.107 | 121 | 62 | 2 | 66 | 185 | 328 | 447 | 5.24e-20 | 92.0 |
| Msa1386960 | AT2G21230.1 | 64.583 | 48 | 17 | 0 | 222 | 269 | 420 | 467 | 2.53e-11 | 65.5 |
| Msa1386960 | AT3G58120.2 | 43.210 | 81 | 36 | 1 | 109 | 189 | 202 | 272 | 3.82e-11 | 63.5 |
| Msa1386960 | AT3G58120.1 | 43.210 | 81 | 36 | 1 | 109 | 189 | 202 | 272 | 7.15e-11 | 63.2 |
Find 144 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTGTTCTGTACTTAA+TGG | 0.146556 | tig0020873:-20879 | Msa1386960:three_prime_UTR |
| TGATTCTATCGGCCAATTTC+AGG | 0.184834 | tig0020873:-21384 | Msa1386960:CDS |
| CATGTCACTACCCTGTTTAT+TGG | 0.215779 | tig0020873:-21260 | Msa1386960:three_prime_UTR |
| AACATGGTCCAAACGATCTT+AGG | 0.241223 | tig0020873:-21514 | Msa1386960:CDS |
| TTTGATTTGATTCAGGATTC+TGG | 0.271099 | tig0020873:-23628 | Msa1386960:intron |
| CAATGTCCAGCCCCTGAAAT+TGG | 0.281734 | tig0020873:+21372 | None:intergenic |
| ATGTCACTACCCTGTTTATT+GGG | 0.283940 | tig0020873:-21259 | Msa1386960:three_prime_UTR |
| GCCCACTCCACCTGTGAATA+TGG | 0.284368 | tig0020873:+22994 | None:intergenic |
| CACAATTGAGCAAGTTTATC+AGG | 0.289271 | tig0020873:+23749 | None:intergenic |
| TTTCATTCCCTCTCATCTAA+TGG | 0.291764 | tig0020873:-21473 | Msa1386960:CDS |
| CGTCTGTAGCGATGAGATTA+GGG | 0.313339 | tig0020873:-23288 | Msa1386960:CDS |
| GAGAAATGTTATTGAATAGA+AGG | 0.328844 | tig0020873:+20854 | None:intergenic |
| GCGTCTGTAGCGATGAGATT+AGG | 0.338160 | tig0020873:-23289 | Msa1386960:CDS |
| AACGTCCCAACCCTCATTAA+TGG | 0.339576 | tig0020873:+23075 | None:intergenic |
| TTAGACTTGAAATTAATTCA+TGG | 0.342642 | tig0020873:-21015 | Msa1386960:three_prime_UTR |
| GTTGCGGTGGTGGTGGATCT+TGG | 0.360501 | tig0020873:+23930 | None:intergenic |
| AAAGAAGGTTAAGTTCAAAA+AGG | 0.362449 | tig0020873:+24181 | None:intergenic |
| GAATTAATTTCAAGTCTAAC+AGG | 0.366447 | tig0020873:+21019 | None:intergenic |
| TAATGAGGGTTGGGACGTTA+TGG | 0.370255 | tig0020873:-23071 | Msa1386960:CDS |
| AGGGGCTGGACATTGGCAAC+AGG | 0.370603 | tig0020873:-21364 | Msa1386960:CDS |
| CTATGAACAACCCAATAAAC+AGG | 0.371418 | tig0020873:+21249 | None:intergenic |
| AAGCTTGAGAATATGAAAAT+TGG | 0.377609 | tig0020873:+21558 | None:intergenic |
| TCAAGGTACATGATCCATTA+TGG | 0.378625 | tig0020873:-20968 | Msa1386960:three_prime_UTR |
| TTCAATTATTTATTTGATTG+AGG | 0.379194 | tig0020873:-21181 | Msa1386960:three_prime_UTR |
| ATCAGAGAGGTAGGTTGAAT+TGG | 0.379412 | tig0020873:-23318 | Msa1386960:CDS |
| TGCATGGCCCTAAGATCGTT+TGG | 0.389186 | tig0020873:+21506 | None:intergenic |
| CCATGCTGATACCTATGGTT+TGG | 0.391118 | tig0020873:-21588 | Msa1386960:CDS |
| AAAGACCTCTTGGCGCGTTT+AGG | 0.396524 | tig0020873:+23716 | None:intergenic |
| GGTCGAAATCGTCGGGGATT+CGG | 0.403638 | tig0020873:+23996 | None:intergenic |
| GAGTTTGGATCCGGAATTAT+CGG | 0.405371 | tig0020873:+23874 | None:intergenic |
| TTTGCATCAAAAGGCGTTGT+TGG | 0.405645 | tig0020873:+21292 | None:intergenic |
| CGACGATTTCGACCTCGAAA+TGG | 0.407698 | tig0020873:-23987 | Msa1386960:CDS |
| TACATCGATTCCGATAATTC+CGG | 0.408499 | tig0020873:-23884 | Msa1386960:CDS |
| CATGCTGATACCTATGGTTT+GGG | 0.409516 | tig0020873:-21587 | Msa1386960:CDS |
| TTAGTAAAATTTGCATCAAA+AGG | 0.417524 | tig0020873:+21283 | None:intergenic |
| AAACTGAGGCTGGTGGGGAC+TGG | 0.421487 | tig0020873:+21448 | None:intergenic |
| TCAATTATTTATTTGATTGA+GGG | 0.422899 | tig0020873:-21180 | Msa1386960:three_prime_UTR |
| ACCCACTTCGTATGATTTGT+CGG | 0.426091 | tig0020873:-21420 | Msa1386960:CDS |
| GATTCTATCGGCCAATTTCA+GGG | 0.428325 | tig0020873:-21383 | Msa1386960:CDS |
| GTGGTGGTGGATCTTGGAAC+TGG | 0.429585 | tig0020873:+23936 | None:intergenic |
| TTGTGCATAAATGACCATAA+TGG | 0.434575 | tig0020873:+20954 | None:intergenic |
| TATCGGCCAATTTCAGGGGC+TGG | 0.448809 | tig0020873:-21378 | Msa1386960:CDS |
| CATCGTTGCGGTTACCGATC+CGG | 0.453334 | tig0020873:+24063 | None:intergenic |
| GATAGGCTCAAGCTTGCTAC+TGG | 0.454169 | tig0020873:-21623 | Msa1386960:CDS |
| ATTGAGATCGACGGTGGAAC+GGG | 0.455173 | tig0020873:+24032 | None:intergenic |
| CATTGAAGAACGAAGTTGAT+AGG | 0.457070 | tig0020873:-21640 | Msa1386960:CDS |
| ATTTCGAGGTCGAAATCGTC+GGG | 0.457489 | tig0020873:+23989 | None:intergenic |
| TCTCATGTTCTGATGCCTGA+TGG | 0.464397 | tig0020873:-21338 | Msa1386960:CDS |
| AGTTGTTGTGGCCATTAATG+AGG | 0.469035 | tig0020873:-23086 | Msa1386960:CDS |
| TGTGGCCATTAATGAGGGTT+GGG | 0.470788 | tig0020873:-23080 | Msa1386960:CDS |
| GAAGACGACGGGATTCAAAC+CGG | 0.472913 | tig0020873:-24082 | Msa1386960:five_prime_UTR |
| GGCGGTAGGAGAATTGAGTT+TGG | 0.473174 | tig0020873:+23859 | None:intergenic |
| AATTGAAACAAATGTCTTCA+AGG | 0.480097 | tig0020873:-21064 | Msa1386960:three_prime_UTR |
| TAGCTTAGCTTGTTGCTCCA+TGG | 0.487772 | tig0020873:+22667 | None:intergenic |
| TGTGTGTGGGAACGTCGAAT+TGG | 0.488371 | tig0020873:-23020 | Msa1386960:CDS |
| CTGATAAACTTGCTCAATTG+TGG | 0.489201 | tig0020873:-23748 | Msa1386960:CDS |
| ACAGAAACGGAGGGACCATC+AGG | 0.491647 | tig0020873:+21323 | None:intergenic |
| AGGAGAATTGAGTTTGGATC+CGG | 0.498325 | tig0020873:+23865 | None:intergenic |
| GGAATTGCTACGGCGGTGAC+CGG | 0.499947 | tig0020873:+23829 | None:intergenic |
| TCATATGAAGATTCTGTTCA+AGG | 0.500008 | tig0020873:-23048 | Msa1386960:CDS |
| TCTTCTTCCTTGTTGTCTGA+AGG | 0.501718 | tig0020873:-23797 | Msa1386960:CDS |
| CCAACCCATGCTGATACCTA+TGG | 0.503575 | tig0020873:-21593 | Msa1386960:CDS |
| CAATTTCAGGGGCTGGACAT+TGG | 0.506474 | tig0020873:-21371 | Msa1386960:CDS |
| TTGTGGCCATTAATGAGGGT+TGG | 0.509108 | tig0020873:-23081 | Msa1386960:CDS |
| AGATCAAACTGAGGCTGGTG+GGG | 0.510809 | tig0020873:+21443 | None:intergenic |
| GTTCCACCGTCGATCTCAAT+CGG | 0.512206 | tig0020873:-24029 | Msa1386960:CDS |
| ATTATCGGAATCGATGTAAG+AGG | 0.514373 | tig0020873:+23889 | None:intergenic |
| ACATGGTCCAAACGATCTTA+GGG | 0.515048 | tig0020873:-21513 | Msa1386960:CDS |
| TAGATCAAACTGAGGCTGGT+GGG | 0.518122 | tig0020873:+21442 | None:intergenic |
| TCGTCGTGTTGTTGCGGTGG+TGG | 0.518420 | tig0020873:+23920 | None:intergenic |
| TCGTGTTGTTGCGGTGGTGG+TGG | 0.524797 | tig0020873:+23923 | None:intergenic |
| TCTCCTACCGCCGCTAATGC+CGG | 0.526393 | tig0020873:-23848 | Msa1386960:CDS |
| CATTTCGAGGTCGAAATCGT+CGG | 0.531230 | tig0020873:+23988 | None:intergenic |
| TTTCTTCCACGTAGTTGTTG+TGG | 0.532491 | tig0020873:-23098 | Msa1386960:intron |
| TATTTGATTGAGGGTGTATG+TGG | 0.536816 | tig0020873:-21171 | Msa1386960:three_prime_UTR |
| TGGGTAGATCAAACTGAGGC+TGG | 0.537417 | tig0020873:+21438 | None:intergenic |
| ACGGCGGTGACCGGCATTAG+CGG | 0.537421 | tig0020873:+23838 | None:intergenic |
| AAAATACCGAGTTGAAGCTT+CGG | 0.538764 | tig0020873:-22697 | Msa1386960:CDS |
| CGTTTGGACCATGTTGTGGT+TGG | 0.540715 | tig0020873:+21522 | None:intergenic |
| GTTATGTGGTTGAGCTTGAA+AGG | 0.547036 | tig0020873:-23563 | Msa1386960:CDS |
| CGGAGAAGCGTCGAAGTCGA+AGG | 0.552256 | tig0020873:+23961 | None:intergenic |
| ATGAAAATGTTGCATTTGCA+TGG | 0.556228 | tig0020873:+21490 | None:intergenic |
| GGGGCTGGACATTGGCAACA+GGG | 0.559117 | tig0020873:-21363 | Msa1386960:CDS |
| GATTGAGATCGACGGTGGAA+CGG | 0.569204 | tig0020873:+24031 | None:intergenic |
| CGGAATCGATGTAAGAGGAA+AGG | 0.570255 | tig0020873:+23894 | None:intergenic |
| AGGAGATCGTCGTGTTGTTG+CGG | 0.570948 | tig0020873:+23914 | None:intergenic |
| CATATGAAGATTCTGTTCAA+GGG | 0.573485 | tig0020873:-23047 | Msa1386960:CDS |
| ATGTATCGGCGGAATTGCTA+CGG | 0.574251 | tig0020873:+23819 | None:intergenic |
| AGATCGTTTGGACCATGTTG+TGG | 0.576424 | tig0020873:+21518 | None:intergenic |
| AGAGAGGAAAGCTTGTTATG+TGG | 0.577168 | tig0020873:-23577 | Msa1386960:CDS |
| GACTGGATCCATTAGATGAG+AGG | 0.584227 | tig0020873:+21465 | None:intergenic |
| AGTCGAAGGGATCCATTTCG+AGG | 0.586525 | tig0020873:+23975 | None:intergenic |
| TTGGTGCATTCCCAAACCAT+AGG | 0.592111 | tig0020873:+21577 | None:intergenic |
| CAACAAGGAAGAAGATGTAT+CGG | 0.593104 | tig0020873:+23805 | None:intergenic |
| CCGCGGCGAGGTCGAAAGAG+AGG | 0.593130 | tig0020873:-23593 | Msa1386960:CDS |
| GTTGTTGTGGCCATTAATGA+GGG | 0.595819 | tig0020873:-23085 | Msa1386960:CDS |
| ACTGGATCCATTAGATGAGA+GGG | 0.595904 | tig0020873:+21466 | None:intergenic |
| GTAGATCAAACTGAGGCTGG+TGG | 0.597370 | tig0020873:+21441 | None:intergenic |
| GAATTGGACTCCATATTCAC+AGG | 0.598417 | tig0020873:-23004 | Msa1386960:intron |
| TTCCGACAAATCATACGAAG+TGG | 0.598591 | tig0020873:+21418 | None:intergenic |
| ATTCTATCGGCCAATTTCAG+GGG | 0.601347 | tig0020873:-21382 | Msa1386960:CDS |
| GAAGCTTCGGTTACAAACCA+TGG | 0.603767 | tig0020873:-22684 | Msa1386960:CDS |
| ATGTTGTGGTTGGTGCATGA+AGG | 0.606809 | tig0020873:+21532 | None:intergenic |
| CAACAAGCTAAGCTATGTGA+TGG | 0.613164 | tig0020873:-22659 | Msa1386960:intron |
| TTCGATTCCTTCAGACAACA+AGG | 0.616363 | tig0020873:+23790 | None:intergenic |
| ATTCAACCTACCTCTCTGAT+CGG | 0.620440 | tig0020873:+23321 | None:intergenic |
| GGAGAAGCGTCGAAGTCGAA+GGG | 0.620947 | tig0020873:+23962 | None:intergenic |
| ATAAATCCGATCAGAGAGGT+AGG | 0.623366 | tig0020873:-23327 | Msa1386960:CDS |
| TTGTAACCGAAGCTTCAACT+CGG | 0.625038 | tig0020873:+22691 | None:intergenic |
| AGATCGTCGTGTTGTTGCGG+TGG | 0.629335 | tig0020873:+23917 | None:intergenic |
| CTTGGCGCGTTTAGGATCAA+CGG | 0.630373 | tig0020873:+23724 | None:intergenic |
| CCTCTCTTTCGACCTCGCCG+CGG | 0.634132 | tig0020873:+23593 | None:intergenic |
| TCCGACAAATCATACGAAGT+GGG | 0.636300 | tig0020873:+21419 | None:intergenic |
| CCAAACCATAGGTATCAGCA+TGG | 0.641882 | tig0020873:+21588 | None:intergenic |
| TTCATGCACCAACCACAACA+TGG | 0.648904 | tig0020873:-21530 | Msa1386960:CDS |
| CTCTCTCACACACACTCGCG+CGG | 0.652014 | tig0020873:+24135 | None:intergenic |
| AATGTGATTGAAAATTGTCA+AGG | 0.657322 | tig0020873:-20985 | Msa1386960:three_prime_UTR |
| GGTGGATCTTGGAACTGGAG+CGG | 0.658797 | tig0020873:+23941 | None:intergenic |
| CGGGAACGACGACATCGTTG+CGG | 0.659963 | tig0020873:+24051 | None:intergenic |
| CGAATCGTCAATCCGCGGCG+AGG | 0.660871 | tig0020873:-23605 | Msa1386960:CDS |
| CCATAGGTATCAGCATGGGT+TGG | 0.661247 | tig0020873:+21593 | None:intergenic |
| CAAACCATAGGTATCAGCAT+GGG | 0.662566 | tig0020873:+21589 | None:intergenic |
| GTTCAAGGGAATCTGTGTGT+GGG | 0.662638 | tig0020873:-23033 | Msa1386960:CDS |
| TTGATCCTAAACGCGCCAAG+AGG | 0.666281 | tig0020873:-23721 | Msa1386960:intron |
| GCTCAAGCTTGCTACTGGAG+AGG | 0.667501 | tig0020873:-21618 | Msa1386960:CDS |
| CCTCCGATTGAGATCGACGG+TGG | 0.668695 | tig0020873:+24026 | None:intergenic |
| CAAGGAAGAAGATGTATCGG+CGG | 0.669677 | tig0020873:+23808 | None:intergenic |
| CGACGGGATTCAAACCGGAT+CGG | 0.671774 | tig0020873:-24077 | Msa1386960:five_prime_UTR |
| TGACCGGCATTAGCGGCGGT+AGG | 0.676875 | tig0020873:+23845 | None:intergenic |
| ATGTTGTCAAGTGATTCTAT+CGG | 0.677885 | tig0020873:-21395 | Msa1386960:CDS |
| TGTTCAAGGGAATCTGTGTG+TGG | 0.681982 | tig0020873:-23034 | Msa1386960:CDS |
| GTCTGTAGCGATGAGATTAG+GGG | 0.691568 | tig0020873:-23287 | Msa1386960:CDS |
| TATCGGCGGAATTGCTACGG+CGG | 0.692611 | tig0020873:+23822 | None:intergenic |
| CCACCGTCGATCTCAATCGG+AGG | 0.695045 | tig0020873:-24026 | Msa1386960:CDS |
| TGAAACAAATGTCTTCAAGG+TGG | 0.697816 | tig0020873:-21061 | Msa1386960:three_prime_UTR |
| GCGGTGACCGGCATTAGCGG+CGG | 0.701383 | tig0020873:+23841 | None:intergenic |
| GTACCTCCGATTGAGATCGA+CGG | 0.703198 | tig0020873:+24023 | None:intergenic |
| TGTAGCGATGAGATTAGGGG+TGG | 0.704993 | tig0020873:-23284 | Msa1386960:intron |
| TATGAACAACCCAATAAACA+GGG | 0.708468 | tig0020873:+21250 | None:intergenic |
| TTTCGAGGTCGAAATCGTCG+GGG | 0.718515 | tig0020873:+23990 | None:intergenic |
| TCTGGCGAATCGTCAATCCG+CGG | 0.722384 | tig0020873:-23610 | Msa1386960:CDS |
| AGTGATAAATCCGATCAGAG+AGG | 0.722453 | tig0020873:-23331 | Msa1386960:CDS |
| TTGACACGAGTGAGACCCAG+AGG | 0.732492 | tig0020873:-21225 | Msa1386960:three_prime_UTR |
| GAAGTGGGTAGATCAAACTG+AGG | 0.775188 | tig0020873:+21434 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAATCTAAAAAAAC+TGG | + | tig0020873:23966-23985 | None:intergenic | 10.0% |
| !!! | TAATATTTTTGATTCAACTT+AGG | + | tig0020873:21614-21633 | None:intergenic | 15.0% |
| !!! | GTTATTTTTTTTTTTCCATT+GGG | - | tig0020873:22161-22180 | Msa1386960:intron | 15.0% |
| !!! | TAATTTTAGTCTCTTAAATT+TGG | - | tig0020873:22600-22619 | Msa1386960:intron | 15.0% |
| !! | TTCAATTATTTATTTGATTG+AGG | - | tig0020873:23893-23912 | Msa1386960:CDS | 15.0% |
| !! | TCAATTATTTATTTGATTGA+GGG | - | tig0020873:23894-23913 | Msa1386960:CDS | 15.0% |
| !! | AATAAGAGTGAGAATTATTT+AGG | - | tig0020873:21852-21871 | Msa1386960:intron | 20.0% |
| !! | AAAAAAATAACCAAAGGATA+GGG | + | tig0020873:22152-22171 | None:intergenic | 20.0% |
| !! | AAAAAAAATAACCAAAGGAT+AGG | + | tig0020873:22153-22172 | None:intergenic | 20.0% |
| !! | GGAAAAAAAAAAATAACCAA+AGG | + | tig0020873:22158-22177 | None:intergenic | 20.0% |
| !!! | GGTTATTTTTTTTTTTCCAT+TGG | - | tig0020873:22160-22179 | Msa1386960:intron | 20.0% |
| !! | ATATAAGGAATTTAACAAAC+TGG | + | tig0020873:22268-22287 | None:intergenic | 20.0% |
| !! | TGTTAAATTCCTTATATTAG+CGG | - | tig0020873:22271-22290 | Msa1386960:intron | 20.0% |
| !! | TATAAGTTATCTTGTAGTAT+CGG | - | tig0020873:22703-22722 | Msa1386960:CDS | 20.0% |
| !! | ATAGACAAAACATTAATGTT+TGG | + | tig0020873:22767-22786 | None:intergenic | 20.0% |
| !! | TTAGTAAAATTTGCATCAAA+AGG | + | tig0020873:23794-23813 | None:intergenic | 20.0% |
| !!! | ATTTGTTTCAATTCTTTTTG+GGG | + | tig0020873:24003-24022 | None:intergenic | 20.0% |
| !!! | CATTTGTTTCAATTCTTTTT+GGG | + | tig0020873:24004-24023 | None:intergenic | 20.0% |
| !!! | ACATTTGTTTCAATTCTTTT+TGG | + | tig0020873:24005-24024 | None:intergenic | 20.0% |
| !! | TTAGACTTGAAATTAATTCA+TGG | - | tig0020873:24059-24078 | Msa1386960:exon | 20.0% |
| ! | AAAGAAGGTTAAGTTCAAAA+AGG | + | tig0020873:20896-20915 | None:intergenic | 25.0% |
| !! | ACCTTCTTTTTATCATTGAA+AGG | - | tig0020873:20907-20926 | Msa1386960:three_prime_UTR | 25.0% |
| ! | TCCTTTCAATGATAAAAAGA+AGG | + | tig0020873:20911-20930 | None:intergenic | 25.0% |
| ! | GAAAAAAAAAAAGAAGACGA+CGG | - | tig0020873:20980-20999 | Msa1386960:three_prime_UTR | 25.0% |
| ! | AAAAAAAAAAAGAAGACGAC+GGG | - | tig0020873:20981-21000 | Msa1386960:three_prime_UTR | 25.0% |
| ! | AGTTCAATTAAAGGAAACAA+AGG | + | tig0020873:22239-22258 | None:intergenic | 25.0% |
| ! | TTGTTTCCTTTAATTGAACT+TGG | - | tig0020873:22239-22258 | Msa1386960:intron | 25.0% |
| ! | TTCCATCAGTATAATATGAA+AGG | - | tig0020873:22515-22534 | Msa1386960:intron | 25.0% |
| ! | CATATTCTAACAGAAACTAT+AGG | + | tig0020873:22645-22664 | None:intergenic | 25.0% |
| !! | TCATTGAATTGAAAAGTATG+AGG | + | tig0020873:22737-22756 | None:intergenic | 25.0% |
| ! | TACAGCATTTATCCTTTAAA+TGG | + | tig0020873:22858-22877 | None:intergenic | 25.0% |
| ! | AAAAAATTACATGTCAAACG+AGG | + | tig0020873:22928-22947 | None:intergenic | 25.0% |
| ! | TAGCTTACATTCTTAGTAAT+TGG | - | tig0020873:23003-23022 | Msa1386960:intron | 25.0% |
| ! | TTACATTCTTAGTAATTGGA+TGG | - | tig0020873:23007-23026 | Msa1386960:CDS | 25.0% |
| ! | CAAGTAAAATAAAAACCGAA+AGG | + | tig0020873:23122-23141 | None:intergenic | 25.0% |
| !!! | AAAACAGAAACACTACTTTT+AGG | + | tig0020873:23312-23331 | None:intergenic | 25.0% |
| ! | AAGCTTGAGAATATGAAAAT+TGG | + | tig0020873:23519-23538 | None:intergenic | 25.0% |
| !!! | GTTGGTTTTATTAACAGAAA+CGG | + | tig0020873:23767-23786 | None:intergenic | 25.0% |
| ! | AACAAAAAATCAATACCTCT+GGG | + | tig0020873:23867-23886 | None:intergenic | 25.0% |
| ! | AAACAAAAAATCAATACCTC+TGG | + | tig0020873:23868-23887 | None:intergenic | 25.0% |
| ! | AATTGAAACAAATGTCTTCA+AGG | - | tig0020873:24010-24029 | Msa1386960:CDS | 25.0% |
| !! | GAATTAATTTCAAGTCTAAC+AGG | + | tig0020873:24058-24077 | None:intergenic | 25.0% |
| ! | AATGTGATTGAAAATTGTCA+AGG | - | tig0020873:24089-24108 | Msa1386960:five_prime_UTR | 25.0% |
| ! | TTCAATTGTTCTGTACTTAA+TGG | - | tig0020873:24195-24214 | Msa1386960:five_prime_UTR | 25.0% |
| ! | GAGAAATGTTATTGAATAGA+AGG | + | tig0020873:24223-24242 | None:intergenic | 25.0% |
| GTTCAAAAAGGAAATCTCTA+CGG | + | tig0020873:20884-20903 | None:intergenic | 30.0% | |
| !!! | GAACTTGTTTTTATAGATCG+TGG | - | tig0020873:21422-21441 | Msa1386960:CDS | 30.0% |
| !! | TTTGATTTGATTCAGGATTC+TGG | - | tig0020873:21446-21465 | Msa1386960:CDS | 30.0% |
| ! | TGCTCAATTAAATCTTTTCC+AGG | - | tig0020873:21572-21591 | Msa1386960:CDS | 30.0% |
| !! | TACTTGTTGTGAAGCTTAAA+TGG | - | tig0020873:21693-21712 | Msa1386960:intron | 30.0% |
| !! | ACTTGTTGTGAAGCTTAAAT+GGG | - | tig0020873:21694-21713 | Msa1386960:intron | 30.0% |
| TCATATGAAGATTCTGTTCA+AGG | - | tig0020873:22026-22045 | Msa1386960:intron | 30.0% | |
| CATATGAAGATTCTGTTCAA+GGG | - | tig0020873:22027-22046 | Msa1386960:intron | 30.0% | |
| TGGGCCTTCAAAAAAAAAAA+GGG | - | tig0020873:22098-22117 | Msa1386960:intron | 30.0% | |
| !!! | GACTCCCTTTTTTTTTTTGA+AGG | + | tig0020873:22105-22124 | None:intergenic | 30.0% |
| !!! | TTTTTTTTCCATTGGGCTAT+TGG | - | tig0020873:22168-22187 | Msa1386960:intron | 30.0% |
| !! | TGGCAGTTCATTTTTCAAAA+TGG | - | tig0020873:22208-22227 | Msa1386960:intron | 30.0% |
| TGGAAACCAAGTTCAATTAA+AGG | + | tig0020873:22248-22267 | None:intergenic | 30.0% | |
| TAAATTCCTTATATTAGCGG+TGG | - | tig0020873:22274-22293 | Msa1386960:intron | 30.0% | |
| AAATTCCTTATATTAGCGGT+GGG | - | tig0020873:22275-22294 | Msa1386960:intron | 30.0% | |
| TAAAGTGTAGCATATTAGCA+TGG | + | tig0020873:22451-22470 | None:intergenic | 30.0% | |
| TCAGGGTTAAACTAAGTTAA+TGG | + | tig0020873:22541-22560 | None:intergenic | 30.0% | |
| AGTCTCTTAAATTTGGTAGA+TGG | - | tig0020873:22607-22626 | Msa1386960:intron | 30.0% | |
| GTCTCTTAAATTTGGTAGAT+GGG | - | tig0020873:22608-22627 | Msa1386960:intron | 30.0% | |
| TATTAATATTTGAGCCTACG+TGG | - | tig0020873:22788-22807 | Msa1386960:intron | 30.0% | |
| !! | CAGCTCATTTAGTTTGTAAT+TGG | + | tig0020873:22882-22901 | None:intergenic | 30.0% |
| CAATTACAAACTAAATGAGC+TGG | - | tig0020873:22880-22899 | Msa1386960:intron | 30.0% | |
| TTGGATGGTATATTAACACT+TGG | - | tig0020873:23022-23041 | Msa1386960:CDS | 30.0% | |
| ! | TTCATTCATTTGGAAAGTGT+GGG | - | tig0020873:23052-23071 | Msa1386960:CDS | 30.0% |
| ATGTACAACGATTTGAAAAC+TGG | + | tig0020873:23280-23299 | None:intergenic | 30.0% | |
| ATGAAAATGTTGCATTTGCA+TGG | + | tig0020873:23587-23606 | None:intergenic | 30.0% | |
| ATGTTGTCAAGTGATTCTAT+CGG | - | tig0020873:23679-23698 | Msa1386960:intron | 30.0% | |
| !! | GTTTTATTAACAGAAACGGA+GGG | + | tig0020873:23763-23782 | None:intergenic | 30.0% |
| TATGAACAACCCAATAAACA+GGG | + | tig0020873:23827-23846 | None:intergenic | 30.0% | |
| TTGTGCATAAATGACCATAA+TGG | + | tig0020873:24123-24142 | None:intergenic | 30.0% | |
| ATTATCGGAATCGATGTAAG+AGG | + | tig0020873:21188-21207 | None:intergenic | 35.0% | |
| !! | TACATCGATTCCGATAATTC+CGG | - | tig0020873:21190-21209 | Msa1386960:three_prime_UTR | 35.0% |
| CAACAAGGAAGAAGATGTAT+CGG | + | tig0020873:21272-21291 | None:intergenic | 35.0% | |
| CACAATTGAGCAAGTTTATC+AGG | + | tig0020873:21328-21347 | None:intergenic | 35.0% | |
| ! | CTGATAAACTTGCTCAATTG+TGG | - | tig0020873:21326-21345 | Msa1386960:CDS | 35.0% |
| GCATTAAAAGAAAGACCTCT+TGG | + | tig0020873:21371-21390 | None:intergenic | 35.0% | |
| !! | TCGTGGATTTGATTTGATTC+AGG | - | tig0020873:21439-21458 | Msa1386960:CDS | 35.0% |
| TTATGGTAAACCGTTATGGA+AGG | - | tig0020873:21939-21958 | Msa1386960:intron | 35.0% | |
| GTGGGCCTTCAAAAAAAAAA+AGG | - | tig0020873:22097-22116 | Msa1386960:intron | 35.0% | |
| !!! | CTTTTTCAGAGAGATACAAC+TGG | - | tig0020873:22343-22362 | Msa1386960:intron | 35.0% |
| ! | AAAATACCGAGTTGAAGCTT+CGG | - | tig0020873:22377-22396 | Msa1386960:intron | 35.0% |
| GGCCTTTCATATTATACTGA+TGG | + | tig0020873:22520-22539 | None:intergenic | 35.0% | |
| CCGATGCTTACATTAATTCA+GGG | + | tig0020873:22558-22577 | None:intergenic | 35.0% | |
| CCCTGAATTAATGTAAGCAT+CGG | - | tig0020873:22555-22574 | Msa1386960:intron | 35.0% | |
| ACCGATGCTTACATTAATTC+AGG | + | tig0020873:22559-22578 | None:intergenic | 35.0% | |
| TGACATGGTAGTCCATTTAA+AGG | - | tig0020873:22843-22862 | Msa1386960:intron | 35.0% | |
| TGGTCTAGACTTCATTCATT+TGG | - | tig0020873:23042-23061 | Msa1386960:CDS | 35.0% | |
| CTTCATTCATTTGGAAAGTG+TGG | - | tig0020873:23051-23070 | Msa1386960:CDS | 35.0% | |
| GAAGTAGTGATAGATGAACA+TGG | + | tig0020873:23200-23219 | None:intergenic | 35.0% | |
| !!! | GGTTTTGATTCATGGTTCAT+TGG | + | tig0020873:23236-23255 | None:intergenic | 35.0% |
| !!! | GTAGTGAAGGTTTTGATTCA+TGG | + | tig0020873:23244-23263 | None:intergenic | 35.0% |
| ACTAGTCATTGAAGTAGTGA+AGG | + | tig0020873:23257-23276 | None:intergenic | 35.0% | |
| ! | CATTGAAGAACGAAGTTGAT+AGG | - | tig0020873:23434-23453 | Msa1386960:intron | 35.0% |
| TTTCATTCCCTCTCATCTAA+TGG | - | tig0020873:23601-23620 | Msa1386960:CDS | 35.0% | |
| !!! | GGTTTTATTAACAGAAACGG+AGG | + | tig0020873:23764-23783 | None:intergenic | 35.0% |
| ATGTCACTACCCTGTTTATT+GGG | - | tig0020873:23815-23834 | Msa1386960:CDS | 35.0% | |
| CTATGAACAACCCAATAAAC+AGG | + | tig0020873:23828-23847 | None:intergenic | 35.0% | |
| ! | TATTTGATTGAGGGTGTATG+TGG | - | tig0020873:23903-23922 | Msa1386960:CDS | 35.0% |
| TGAAACAAATGTCTTCAAGG+TGG | - | tig0020873:24013-24032 | Msa1386960:CDS | 35.0% | |
| TCAAGGTACATGATCCATTA+TGG | - | tig0020873:24106-24125 | Msa1386960:five_prime_UTR | 35.0% | |
| GAGTTTGGATCCGGAATTAT+CGG | + | tig0020873:21203-21222 | None:intergenic | 40.0% | |
| AGGAGAATTGAGTTTGGATC+CGG | + | tig0020873:21212-21231 | None:intergenic | 40.0% | |
| ! | TCTTCTTCCTTGTTGTCTGA+AGG | - | tig0020873:21277-21296 | Msa1386960:three_prime_UTR | 40.0% |
| TTCGATTCCTTCAGACAACA+AGG | + | tig0020873:21287-21306 | None:intergenic | 40.0% | |
| !! | AGAGAGGAAAGCTTGTTATG+TGG | - | tig0020873:21497-21516 | Msa1386960:CDS | 40.0% |
| GTTATGTGGTTGAGCTTGAA+AGG | - | tig0020873:21511-21530 | Msa1386960:CDS | 40.0% | |
| GGCAATGATGAGTAATAACC+TGG | + | tig0020873:21593-21612 | None:intergenic | 40.0% | |
| AGTGATAAATCCGATCAGAG+AGG | - | tig0020873:21743-21762 | Msa1386960:intron | 40.0% | |
| ATAAATCCGATCAGAGAGGT+AGG | - | tig0020873:21747-21766 | Msa1386960:intron | 40.0% | |
| ATTCAACCTACCTCTCTGAT+CGG | + | tig0020873:21756-21775 | None:intergenic | 40.0% | |
| ! | ATCAGAGAGGTAGGTTGAAT+TGG | - | tig0020873:21756-21775 | Msa1386960:intron | 40.0% |
| TACCGTTTGTGTAATGCGTA+TGG | - | tig0020873:21887-21906 | Msa1386960:intron | 40.0% | |
| CACCATACGCATTACACAAA+CGG | + | tig0020873:21892-21911 | None:intergenic | 40.0% | |
| ! | TTTGAGGTTGCCTTCCATAA+CGG | + | tig0020873:21952-21971 | None:intergenic | 40.0% |
| TTATGGAAGGCAACCTCAAA+CGG | - | tig0020873:21952-21971 | Msa1386960:intron | 40.0% | |
| TTTCTTCCACGTAGTTGTTG+TGG | - | tig0020873:21976-21995 | Msa1386960:intron | 40.0% | |
| AGTTGTTGTGGCCATTAATG+AGG | - | tig0020873:21988-22007 | Msa1386960:intron | 40.0% | |
| GTTGTTGTGGCCATTAATGA+GGG | - | tig0020873:21989-22008 | Msa1386960:intron | 40.0% | |
| GAATTGGACTCCATATTCAC+AGG | - | tig0020873:22070-22089 | Msa1386960:intron | 40.0% | |
| AAAGCAAACCAATAGCCCAA+TGG | + | tig0020873:22179-22198 | None:intergenic | 40.0% | |
| !!! | TGGTTTGCTTTTCACTCTTG+TGG | - | tig0020873:22188-22207 | Msa1386960:intron | 40.0% |
| GAAATCCCACCGCTAATATA+AGG | + | tig0020873:22283-22302 | None:intergenic | 40.0% | |
| TTGTAACCGAAGCTTCAACT+CGG | + | tig0020873:22386-22405 | None:intergenic | 40.0% | |
| CAACAAGCTAAGCTATGTGA+TGG | - | tig0020873:22415-22434 | Msa1386960:intron | 40.0% | |
| CAGCAAAACAAGAAGAAACG+AGG | + | tig0020873:22477-22496 | None:intergenic | 40.0% | |
| !!! | CTCGTTTCTTCTTGTTTTGC+TGG | - | tig0020873:22475-22494 | Msa1386960:intron | 40.0% |
| ! | ATTTGAGCCTACGTGGATTA+TGG | - | tig0020873:22795-22814 | Msa1386960:intron | 40.0% |
| TCACAAACCATAATCCACGT+AGG | + | tig0020873:22805-22824 | None:intergenic | 40.0% | |
| CTACAGTGATTGAAGCCTTT+CGG | - | tig0020873:23104-23123 | Msa1386960:intron | 40.0% | |
| CAAACCATAGGTATCAGCAT+GGG | + | tig0020873:23488-23507 | None:intergenic | 40.0% | |
| CATGCTGATACCTATGGTTT+GGG | - | tig0020873:23487-23506 | Msa1386960:intron | 40.0% | |
| AACATGGTCCAAACGATCTT+AGG | - | tig0020873:23560-23579 | Msa1386960:CDS | 40.0% | |
| ACATGGTCCAAACGATCTTA+GGG | - | tig0020873:23561-23580 | Msa1386960:CDS | 40.0% | |
| ACTGGATCCATTAGATGAGA+GGG | + | tig0020873:23611-23630 | None:intergenic | 40.0% | |
| ! | ACCCACTTCGTATGATTTGT+CGG | - | tig0020873:23654-23673 | Msa1386960:intron | 40.0% |
| TCCGACAAATCATACGAAGT+GGG | + | tig0020873:23658-23677 | None:intergenic | 40.0% | |
| TTCCGACAAATCATACGAAG+TGG | + | tig0020873:23659-23678 | None:intergenic | 40.0% | |
| TGATTCTATCGGCCAATTTC+AGG | - | tig0020873:23690-23709 | Msa1386960:intron | 40.0% | |
| GATTCTATCGGCCAATTTCA+GGG | - | tig0020873:23691-23710 | Msa1386960:intron | 40.0% | |
| ATTCTATCGGCCAATTTCAG+GGG | - | tig0020873:23692-23711 | Msa1386960:intron | 40.0% | |
| !! | TTTGCATCAAAAGGCGTTGT+TGG | + | tig0020873:23785-23804 | None:intergenic | 40.0% |
| CATGTCACTACCCTGTTTAT+TGG | - | tig0020873:23814-23833 | Msa1386960:CDS | 40.0% | |
| ATTTCGAGGTCGAAATCGTC+GGG | + | tig0020873:21088-21107 | None:intergenic | 45.0% | |
| CATTTCGAGGTCGAAATCGT+CGG | + | tig0020873:21089-21108 | None:intergenic | 45.0% | |
| CGGAATCGATGTAAGAGGAA+AGG | + | tig0020873:21183-21202 | None:intergenic | 45.0% | |
| ! | ATGTATCGGCGGAATTGCTA+CGG | + | tig0020873:21258-21277 | None:intergenic | 45.0% |
| CAAGGAAGAAGATGTATCGG+CGG | + | tig0020873:21269-21288 | None:intergenic | 45.0% | |
| CGTCTGTAGCGATGAGATTA+GGG | - | tig0020873:21786-21805 | Msa1386960:intron | 45.0% | |
| GTCTGTAGCGATGAGATTAG+GGG | - | tig0020873:21787-21806 | Msa1386960:intron | 45.0% | |
| AGCACTCTGACGCTTAAGTT+AGG | - | tig0020873:21821-21840 | Msa1386960:intron | 45.0% | |
| GCACTCTGACGCTTAAGTTA+GGG | - | tig0020873:21822-21841 | Msa1386960:intron | 45.0% | |
| GGGGTTATGGTAAACCGTTA+TGG | - | tig0020873:21935-21954 | Msa1386960:intron | 45.0% | |
| ACGTGGAAGAAATCCGTTTG+AGG | + | tig0020873:21968-21987 | None:intergenic | 45.0% | |
| TAATGGCCACAACAACTACG+TGG | + | tig0020873:21985-22004 | None:intergenic | 45.0% | |
| TTGTGGCCATTAATGAGGGT+TGG | - | tig0020873:21993-22012 | Msa1386960:intron | 45.0% | |
| TGTGGCCATTAATGAGGGTT+GGG | - | tig0020873:21994-22013 | Msa1386960:intron | 45.0% | |
| AACGTCCCAACCCTCATTAA+TGG | + | tig0020873:22002-22021 | None:intergenic | 45.0% | |
| TAATGAGGGTTGGGACGTTA+TGG | - | tig0020873:22003-22022 | Msa1386960:intron | 45.0% | |
| TGTTCAAGGGAATCTGTGTG+TGG | - | tig0020873:22040-22059 | Msa1386960:intron | 45.0% | |
| GTTCAAGGGAATCTGTGTGT+GGG | - | tig0020873:22041-22060 | Msa1386960:intron | 45.0% | |
| TTGGACTCCATATTCACAGG+TGG | - | tig0020873:22073-22092 | Msa1386960:intron | 45.0% | |
| TCCATATTCACAGGTGGAGT+GGG | - | tig0020873:22079-22098 | Msa1386960:intron | 45.0% | |
| ! | ATAGGGCAACTGTTCTGGAT+TGG | + | tig0020873:22135-22154 | None:intergenic | 45.0% |
| AAAGGATAGGGCAACTGTTC+TGG | + | tig0020873:22140-22159 | None:intergenic | 45.0% | |
| AGAACAGTTGCCCTATCCTT+TGG | - | tig0020873:22139-22158 | Msa1386960:intron | 45.0% | |
| GAAGCTTCGGTTACAAACCA+TGG | - | tig0020873:22390-22409 | Msa1386960:intron | 45.0% | |
| !! | TAGCTTAGCTTGTTGCTCCA+TGG | + | tig0020873:22410-22429 | None:intergenic | 45.0% |
| GTCAACTGTCTCAGATGACA+TGG | - | tig0020873:22828-22847 | Msa1386960:intron | 45.0% | |
| CCAAACCATAGGTATCAGCA+TGG | + | tig0020873:23489-23508 | None:intergenic | 45.0% | |
| CCATGCTGATACCTATGGTT+TGG | - | tig0020873:23486-23505 | Msa1386960:intron | 45.0% | |
| TTGGTGCATTCCCAAACCAT+AGG | + | tig0020873:23500-23519 | None:intergenic | 45.0% | |
| ! | ATGTTGTGGTTGGTGCATGA+AGG | + | tig0020873:23545-23564 | None:intergenic | 45.0% |
| TTCATGCACCAACCACAACA+TGG | - | tig0020873:23544-23563 | Msa1386960:CDS | 45.0% | |
| AGATCGTTTGGACCATGTTG+TGG | + | tig0020873:23559-23578 | None:intergenic | 45.0% | |
| GACTGGATCCATTAGATGAG+AGG | + | tig0020873:23612-23631 | None:intergenic | 45.0% | |
| TAGATCAAACTGAGGCTGGT+GGG | + | tig0020873:23635-23654 | None:intergenic | 45.0% | |
| GAAGTGGGTAGATCAAACTG+AGG | + | tig0020873:23643-23662 | None:intergenic | 45.0% | |
| TCTCATGTTCTGATGCCTGA+TGG | - | tig0020873:23736-23755 | Msa1386960:CDS | 45.0% | |
| !!! | ATAATTATTATTTTTAAAAC+TGG | + | tig0020873:23388-23407 | None:intergenic | 5.0% |
| TGAGAGAGAGAGAGAGAGAG+CGG | - | tig0020873:20954-20973 | Msa1386960:three_prime_UTR | 50.0% | |
| GAAGACGACGGGATTCAAAC+CGG | - | tig0020873:20992-21011 | Msa1386960:three_prime_UTR | 50.0% | |
| ATTGAGATCGACGGTGGAAC+GGG | + | tig0020873:21045-21064 | None:intergenic | 50.0% | |
| GATTGAGATCGACGGTGGAA+CGG | + | tig0020873:21046-21065 | None:intergenic | 50.0% | |
| GTTCCACCGTCGATCTCAAT+CGG | - | tig0020873:21045-21064 | Msa1386960:three_prime_UTR | 50.0% | |
| GTACCTCCGATTGAGATCGA+CGG | + | tig0020873:21054-21073 | None:intergenic | 50.0% | |
| TTTCGAGGTCGAAATCGTCG+GGG | + | tig0020873:21087-21106 | None:intergenic | 50.0% | |
| CGACGATTTCGACCTCGAAA+TGG | - | tig0020873:21087-21106 | Msa1386960:three_prime_UTR | 50.0% | |
| AGTCGAAGGGATCCATTTCG+AGG | + | tig0020873:21102-21121 | None:intergenic | 50.0% | |
| ! | AGGAGATCGTCGTGTTGTTG+CGG | + | tig0020873:21163-21182 | None:intergenic | 50.0% |
| GGCGGTAGGAGAATTGAGTT+TGG | + | tig0020873:21218-21237 | None:intergenic | 50.0% | |
| ! | CTTGGCGCGTTTAGGATCAA+CGG | + | tig0020873:21353-21372 | None:intergenic | 50.0% |
| TTGATCCTAAACGCGCCAAG+AGG | - | tig0020873:21353-21372 | Msa1386960:CDS | 50.0% | |
| AAAGACCTCTTGGCGCGTTT+AGG | + | tig0020873:21361-21380 | None:intergenic | 50.0% | |
| GCGTCTGTAGCGATGAGATT+AGG | - | tig0020873:21785-21804 | Msa1386960:intron | 50.0% | |
| TGTAGCGATGAGATTAGGGG+TGG | - | tig0020873:21790-21809 | Msa1386960:intron | 50.0% | |
| GCGTATGGTGCATATGTCGA+AGG | - | tig0020873:21902-21921 | Msa1386960:intron | 50.0% | |
| GCATATGTCGAAGGAATCCC+AGG | - | tig0020873:21911-21930 | Msa1386960:intron | 50.0% | |
| TATGTCGAAGGAATCCCAGG+AGG | - | tig0020873:21914-21933 | Msa1386960:intron | 50.0% | |
| ATGTCGAAGGAATCCCAGGA+GGG | - | tig0020873:21915-21934 | Msa1386960:intron | 50.0% | |
| GGTTTACCATAACCCCTCCT+GGG | + | tig0020873:21931-21950 | None:intergenic | 50.0% | |
| TGTGTGTGGGAACGTCGAAT+TGG | - | tig0020873:22054-22073 | Msa1386960:intron | 50.0% | |
| CTCCATATTCACAGGTGGAG+TGG | - | tig0020873:22078-22097 | Msa1386960:intron | 50.0% | |
| TGCAACGACTTGAGCTGACA+TGG | + | tig0020873:22960-22979 | None:intergenic | 50.0% | |
| !! | GATAGGCTCAAGCTTGCTAC+TGG | - | tig0020873:23451-23470 | Msa1386960:intron | 50.0% |
| CCATAGGTATCAGCATGGGT+TGG | + | tig0020873:23484-23503 | None:intergenic | 50.0% | |
| CCAACCCATGCTGATACCTA+TGG | - | tig0020873:23481-23500 | Msa1386960:intron | 50.0% | |
| CGTTTGGACCATGTTGTGGT+TGG | + | tig0020873:23555-23574 | None:intergenic | 50.0% | |
| TGCATGGCCCTAAGATCGTT+TGG | + | tig0020873:23571-23590 | None:intergenic | 50.0% | |
| AGATCAAACTGAGGCTGGTG+GGG | + | tig0020873:23634-23653 | None:intergenic | 50.0% | |
| GTAGATCAAACTGAGGCTGG+TGG | + | tig0020873:23636-23655 | None:intergenic | 50.0% | |
| TGGGTAGATCAAACTGAGGC+TGG | + | tig0020873:23639-23658 | None:intergenic | 50.0% | |
| CAATGTCCAGCCCCTGAAAT+TGG | + | tig0020873:23705-23724 | None:intergenic | 50.0% | |
| CAATTTCAGGGGCTGGACAT+TGG | - | tig0020873:23703-23722 | Msa1386960:intron | 50.0% | |
| CGACGGGATTCAAACCGGAT+CGG | - | tig0020873:20997-21016 | Msa1386960:three_prime_UTR | 55.0% | |
| CATCGTTGCGGTTACCGATC+CGG | + | tig0020873:21014-21033 | None:intergenic | 55.0% | |
| GGTCGAAATCGTCGGGGATT+CGG | + | tig0020873:21081-21100 | None:intergenic | 55.0% | |
| !! | GGAGAAGCGTCGAAGTCGAA+GGG | + | tig0020873:21115-21134 | None:intergenic | 55.0% |
| GGTGGATCTTGGAACTGGAG+CGG | + | tig0020873:21136-21155 | None:intergenic | 55.0% | |
| !! | GTGGTGGTGGATCTTGGAAC+TGG | + | tig0020873:21141-21160 | None:intergenic | 55.0% |
| ! | AGATCGTCGTGTTGTTGCGG+TGG | + | tig0020873:21160-21179 | None:intergenic | 55.0% |
| TATCGGCGGAATTGCTACGG+CGG | + | tig0020873:21255-21274 | None:intergenic | 55.0% | |
| TCTGGCGAATCGTCAATCCG+CGG | - | tig0020873:21464-21483 | Msa1386960:CDS | 55.0% | |
| TGTCGAAGGAATCCCAGGAG+GGG | - | tig0020873:21916-21935 | Msa1386960:intron | 55.0% | |
| AGGAATCCCAGGAGGGGTTA+TGG | - | tig0020873:21922-21941 | Msa1386960:intron | 55.0% | |
| CGGTTTACCATAACCCCTCC+TGG | + | tig0020873:21932-21951 | None:intergenic | 55.0% | |
| GCCCACTCCACCTGTGAATA+TGG | + | tig0020873:22083-22102 | None:intergenic | 55.0% | |
| !! | GCTCAAGCTTGCTACTGGAG+AGG | - | tig0020873:23456-23475 | Msa1386960:intron | 55.0% |
| TATCGGCCAATTTCAGGGGC+TGG | - | tig0020873:23696-23715 | Msa1386960:intron | 55.0% | |
| ACAGAAACGGAGGGACCATC+AGG | + | tig0020873:23754-23773 | None:intergenic | 55.0% | |
| TTGACACGAGTGAGACCCAG+AGG | - | tig0020873:23849-23868 | Msa1386960:CDS | 55.0% | |
| CTCTCTCACACACACTCGCG+CGG | + | tig0020873:20942-20961 | None:intergenic | 60.0% | |
| CGGGAACGACGACATCGTTG+CGG | + | tig0020873:21026-21045 | None:intergenic | 60.0% | |
| CCTCCGATTGAGATCGACGG+TGG | + | tig0020873:21051-21070 | None:intergenic | 60.0% | |
| CCACCGTCGATCTCAATCGG+AGG | - | tig0020873:21048-21067 | Msa1386960:three_prime_UTR | 60.0% | |
| !! | CGGAGAAGCGTCGAAGTCGA+AGG | + | tig0020873:21116-21135 | None:intergenic | 60.0% |
| !! | GTTGCGGTGGTGGTGGATCT+TGG | + | tig0020873:21147-21166 | None:intergenic | 60.0% |
| ! | TCGTGTTGTTGCGGTGGTGG+TGG | + | tig0020873:21154-21173 | None:intergenic | 60.0% |
| ! | TCGTCGTGTTGTTGCGGTGG+TGG | + | tig0020873:21157-21176 | None:intergenic | 60.0% |
| TCTCCTACCGCCGCTAATGC+CGG | - | tig0020873:21226-21245 | Msa1386960:three_prime_UTR | 60.0% | |
| GGAATTGCTACGGCGGTGAC+CGG | + | tig0020873:21248-21267 | None:intergenic | 60.0% | |
| AAACTGAGGCTGGTGGGGAC+TGG | + | tig0020873:23629-23648 | None:intergenic | 60.0% | |
| AGGGGCTGGACATTGGCAAC+AGG | - | tig0020873:23710-23729 | Msa1386960:intron | 60.0% | |
| GGGGCTGGACATTGGCAACA+GGG | - | tig0020873:23711-23730 | Msa1386960:intron | 60.0% | |
| TGACCGGCATTAGCGGCGGT+AGG | + | tig0020873:21232-21251 | None:intergenic | 65.0% | |
| ACGGCGGTGACCGGCATTAG+CGG | + | tig0020873:21239-21258 | None:intergenic | 65.0% | |
| CGAATCGTCAATCCGCGGCG+AGG | - | tig0020873:21469-21488 | Msa1386960:CDS | 65.0% | |
| CCTCTCTTTCGACCTCGCCG+CGG | + | tig0020873:21484-21503 | None:intergenic | 65.0% | |
| GCGGTGACCGGCATTAGCGG+CGG | + | tig0020873:21236-21255 | None:intergenic | 70.0% | |
| CCGCGGCGAGGTCGAAAGAG+AGG | - | tig0020873:21481-21500 | Msa1386960:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020873 | gene | 20848 | 24248 | 20848 | ID=Msa1386960;Name=Msa1386960 |
| tig0020873 | mRNA | 20848 | 24248 | 20848 | ID=Msa1386960-mRNA-1;Parent=Msa1386960;Name=Msa1386960-mRNA-1;_AED=0.09;_eAED=0.11;_QI=183|0.4|0.66|1|1|1|6|450|375 |
| tig0020873 | exon | 20848 | 21674 | 20848 | ID=Msa1386960-mRNA-1:exon:10437;Parent=Msa1386960-mRNA-1 |
| tig0020873 | exon | 22660 | 22744 | 22660 | ID=Msa1386960-mRNA-1:exon:10436;Parent=Msa1386960-mRNA-1 |
| tig0020873 | exon | 23005 | 23106 | 23005 | ID=Msa1386960-mRNA-1:exon:10435;Parent=Msa1386960-mRNA-1 |
| tig0020873 | exon | 23285 | 23371 | 23285 | ID=Msa1386960-mRNA-1:exon:10434;Parent=Msa1386960-mRNA-1 |
| tig0020873 | exon | 23503 | 23635 | 23503 | ID=Msa1386960-mRNA-1:exon:10433;Parent=Msa1386960-mRNA-1 |
| tig0020873 | exon | 23722 | 24248 | 23722 | ID=Msa1386960-mRNA-1:exon:10432;Parent=Msa1386960-mRNA-1 |
| tig0020873 | five_prime_UTR | 24066 | 24248 | 24066 | ID=Msa1386960-mRNA-1:five_prime_utr;Parent=Msa1386960-mRNA-1 |
| tig0020873 | CDS | 23722 | 24065 | 23722 | ID=Msa1386960-mRNA-1:cds;Parent=Msa1386960-mRNA-1 |
| tig0020873 | CDS | 23503 | 23635 | 23503 | ID=Msa1386960-mRNA-1:cds;Parent=Msa1386960-mRNA-1 |
| tig0020873 | CDS | 23285 | 23371 | 23285 | ID=Msa1386960-mRNA-1:cds;Parent=Msa1386960-mRNA-1 |
| tig0020873 | CDS | 23005 | 23106 | 23005 | ID=Msa1386960-mRNA-1:cds;Parent=Msa1386960-mRNA-1 |
| tig0020873 | CDS | 22660 | 22744 | 22660 | ID=Msa1386960-mRNA-1:cds;Parent=Msa1386960-mRNA-1 |
| tig0020873 | CDS | 21298 | 21674 | 21298 | ID=Msa1386960-mRNA-1:cds;Parent=Msa1386960-mRNA-1 |
| tig0020873 | three_prime_UTR | 20848 | 21297 | 20848 | ID=Msa1386960-mRNA-1:three_prime_utr;Parent=Msa1386960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
