Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517960 | XP_003602558.1 | 96.262 | 535 | 16 | 1 | 1 | 535 | 1 | 531 | 0.0 | 1063 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517960 | G7JAY7 | 96.262 | 535 | 16 | 1 | 1 | 535 | 1 | 531 | 0.0 | 1063 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0427280 | Msa0517960 | 0.816338 | 5.821100e-52 | -8.615850e-47 |
| Msa0517960 | Msa1200320 | 0.800637 | 1.312832e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517960 | MtrunA17_Chr3g0129751 | 96.262 | 535 | 16 | 1 | 1 | 535 | 1 | 531 | 0.0 | 1063 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517960 | AT5G39590.1 | 53.137 | 542 | 247 | 5 | 1 | 535 | 1 | 542 | 0.0 | 615 |
Find 142 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATTGTTCTTTATATTTC+AGG | 0.127764 | 3_4:-69723657 | Msa0517960:three_prime_UTR |
| TGATTCGTTGCCACTGTTAT+TGG | 0.166664 | 3_4:-69726120 | Msa0517960:CDS |
| CCACGGTCCGTTGCTAATTT+TGG | 0.172838 | 3_4:-69724916 | Msa0517960:CDS |
| CTGATGAAAATGGAATAAAT+TGG | 0.207316 | 3_4:-69726058 | Msa0517960:CDS |
| TTCTCTTGCTTTCAATTTGT+TGG | 0.218628 | 3_4:-69725854 | Msa0517960:CDS |
| TTTCAAGACCTTCATTTGTT+AGG | 0.229290 | 3_4:+69724829 | None:intergenic |
| GAAGAGGCCTCAACAGATTT+TGG | 0.275612 | 3_4:-69724956 | Msa0517960:CDS |
| GAAAATAAAGATATCTTCTA+TGG | 0.277670 | 3_4:-69724810 | Msa0517960:CDS |
| GCTATAACAAGTGTTGTTCT+AGG | 0.279979 | 3_4:-69726019 | Msa0517960:CDS |
| GCAATCAGGAAATTTGTTAT+AGG | 0.290709 | 3_4:-69724855 | Msa0517960:CDS |
| GAAGTTGAAGTTTGGGGACT+TGG | 0.298753 | 3_4:-69724023 | Msa0517960:CDS |
| TCTGGTTGTTTATATTCTTT+AGG | 0.306058 | 3_4:-69724783 | Msa0517960:CDS |
| AGCAAATTTAGATGTTCATT+TGG | 0.308600 | 3_4:-69725937 | Msa0517960:CDS |
| GAAATTGCCCACGCCCTTCC+TGG | 0.313163 | 3_4:+69725322 | None:intergenic |
| ACATTTCAGAAGTTGAAGTT+TGG | 0.323569 | 3_4:-69724031 | Msa0517960:CDS |
| TGAAGGTGGGTTTGATGTTT+GGG | 0.338894 | 3_4:-69725724 | Msa0517960:CDS |
| CATTTCAGAAGTTGAAGTTT+GGG | 0.339247 | 3_4:-69724030 | Msa0517960:CDS |
| CCCAGTTTGCAAATGTCTTC+AGG | 0.339582 | 3_4:+69723814 | None:intergenic |
| CTGTGGGGAAGTTCGTTACT+TGG | 0.349126 | 3_4:-69725668 | Msa0517960:CDS |
| ATAAATATTCTCTCATTTCC+CGG | 0.349889 | 3_4:+69724526 | None:intergenic |
| TCTCTTGCTTTCAATTTGTT+GGG | 0.350083 | 3_4:-69725853 | Msa0517960:CDS |
| GAGAGACAAACCGATAAATA+AGG | 0.353927 | 3_4:+69725224 | None:intergenic |
| TCCAGCTCCACTGCTAATAA+AGG | 0.356346 | 3_4:+69725258 | None:intergenic |
| TATGGGAATTGCCTGTGTTT+CGG | 0.357587 | 3_4:+69726208 | None:intergenic |
| ACCTGAAGACATTTGCAAAC+TGG | 0.358581 | 3_4:-69723815 | Msa0517960:CDS |
| TGTTTCGGAATCGGCGAACT+TGG | 0.362495 | 3_4:+69726223 | None:intergenic |
| AGCAAGAGAAACACATGCTT+GGG | 0.367041 | 3_4:+69725867 | None:intergenic |
| TCTTCCCTTCGAGCAGCATT+TGG | 0.372230 | 3_4:+69723750 | None:intergenic |
| ATGAAGGTGGGTTTGATGTT+TGG | 0.373055 | 3_4:-69725725 | Msa0517960:CDS |
| TTCAAGACCTTCATTTGTTA+GGG | 0.381195 | 3_4:+69724830 | None:intergenic |
| CAACGAATCAGTTGTGTTCT+CGG | 0.384710 | 3_4:+69726133 | None:intergenic |
| CAACAGAATCGTACCTGATC+TGG | 0.386920 | 3_4:+69724430 | None:intergenic |
| CAATTTGTTGGGCTATGTCA+TGG | 0.395450 | 3_4:-69725842 | Msa0517960:CDS |
| ACACCAGTTGGAGTTGCATT+TGG | 0.395706 | 3_4:-69724556 | Msa0517960:CDS |
| TGAATGATAACCTTATTTAT+CGG | 0.399164 | 3_4:-69725234 | Msa0517960:intron |
| AATTGCCTGTGTTTCGGAAT+CGG | 0.400472 | 3_4:+69726214 | None:intergenic |
| GCCTTTATTAGCAGTGGAGC+TGG | 0.400846 | 3_4:-69725259 | Msa0517960:CDS |
| AACAGTTTCTGCCGAACAAC+AGG | 0.402074 | 3_4:-69726303 | Msa0517960:CDS |
| GACTGGGTGGCAGGATGAAT+TGG | 0.405881 | 3_4:-69725407 | Msa0517960:intron |
| TGATGAAAATGGAATAAATT+GGG | 0.410341 | 3_4:-69726057 | Msa0517960:CDS |
| AAATACCGCTTTAAGCAATC+TGG | 0.411669 | 3_4:+69725621 | None:intergenic |
| CCACCAAATGCAACTCCAAC+TGG | 0.433187 | 3_4:+69724553 | None:intergenic |
| TGGTTCTCTTCTTCCAGATC+AGG | 0.438842 | 3_4:-69724443 | Msa0517960:intron |
| CCTGAAGACATTTGCAAACT+GGG | 0.439197 | 3_4:-69723814 | Msa0517960:CDS |
| GTTGCTGCAAGTTCTGGAAT+TGG | 0.439736 | 3_4:-69724894 | Msa0517960:CDS |
| TGTACCGGATTTGAGTCATT+TGG | 0.443325 | 3_4:-69725784 | Msa0517960:CDS |
| TTTCATCTATTTCCACCTAC+TGG | 0.444921 | 3_4:-69724753 | Msa0517960:intron |
| ACATATATCGTTGCTTTGCT+TGG | 0.445689 | 3_4:-69723716 | Msa0517960:three_prime_UTR |
| ATCTGTTGAGGCCTCTTCCA+TGG | 0.452687 | 3_4:+69724961 | None:intergenic |
| GTAGAAATTTGAAAGGGAAA+AGG | 0.456150 | 3_4:-69725815 | Msa0517960:CDS |
| GATATCTTCTATGGAACCTC+TGG | 0.459326 | 3_4:-69724801 | Msa0517960:CDS |
| GTTGAAGTTTGGGGACTTGG+TGG | 0.460472 | 3_4:-69724020 | Msa0517960:CDS |
| ATCTGATGATGTTGATTGTA+AGG | 0.461071 | 3_4:-69725907 | Msa0517960:CDS |
| TACAGCCACTTGCATCCTAC+TGG | 0.463901 | 3_4:-69724601 | Msa0517960:CDS |
| CCAGTTGGAGTTGCATTTGG+TGG | 0.463915 | 3_4:-69724553 | Msa0517960:CDS |
| AAATTGCCCACGCCCTTCCT+GGG | 0.465282 | 3_4:+69725323 | None:intergenic |
| TCCACTGCTAATAAAGGCTC+TGG | 0.471446 | 3_4:+69725264 | None:intergenic |
| GTTGCATTTGGTGGAACTCC+GGG | 0.477687 | 3_4:-69724544 | Msa0517960:CDS |
| AATTTGTTGGGCTATGTCAT+GGG | 0.478841 | 3_4:-69725841 | Msa0517960:CDS |
| TCCAGAGCCTTTATTAGCAG+TGG | 0.487708 | 3_4:-69725265 | Msa0517960:CDS |
| ACGAGGGAAATTCTGCAATC+AGG | 0.488368 | 3_4:-69724869 | Msa0517960:CDS |
| CTATAACAAGTGTTGTTCTA+GGG | 0.488555 | 3_4:-69726018 | Msa0517960:CDS |
| GCTTGGTGCAATACTTTCAA+AGG | 0.494641 | 3_4:-69723699 | Msa0517960:three_prime_UTR |
| TGGGATTGTAGAAATTTGAA+AGG | 0.499833 | 3_4:-69725822 | Msa0517960:CDS |
| GAAACACATGCTTGGGGAGA+AGG | 0.499864 | 3_4:+69725874 | None:intergenic |
| AATTGGGTTGAATTTGTGAA+AGG | 0.500027 | 3_4:-69726041 | Msa0517960:CDS |
| TGCTTCAGTTTCGCTCGCGA+AGG | 0.506425 | 3_4:-69726170 | Msa0517960:CDS |
| TTGAAGTTTGGGGACTTGGT+GGG | 0.507974 | 3_4:-69724019 | Msa0517960:CDS |
| AGTTGCATTTGGTGGAACTC+CGG | 0.508584 | 3_4:-69724545 | Msa0517960:CDS |
| GGGATTGTAGAAATTTGAAA+GGG | 0.513613 | 3_4:-69725821 | Msa0517960:CDS |
| TTGAAGTATGGGAAGAGCTC+CGG | 0.515043 | 3_4:+69726256 | None:intergenic |
| TGCAAATAGCAGTAACTGAA+GGG | 0.522985 | 3_4:-69725587 | Msa0517960:CDS |
| ATAGGTGCCCTAACAAATGA+AGG | 0.525123 | 3_4:-69724837 | Msa0517960:CDS |
| AATCAGTTGTGTTCTCGGTA+TGG | 0.525741 | 3_4:+69726138 | None:intergenic |
| AAGCAAGAGAAACACATGCT+TGG | 0.526907 | 3_4:+69725866 | None:intergenic |
| TGTGGGGAAGTTCGTTACTT+GGG | 0.531671 | 3_4:-69725667 | Msa0517960:CDS |
| GAAGTTGATGCTCCCATCGC+CGG | 0.532156 | 3_4:+69726332 | None:intergenic |
| ATGCAACTCCAACTGGTGTT+GGG | 0.536297 | 3_4:+69724560 | None:intergenic |
| TTCACCTGAGAAAATGATGA+TGG | 0.537132 | 3_4:-69723787 | Msa0517960:CDS |
| GAAAAGGAATTTGAGTGTAC+CGG | 0.541886 | 3_4:-69725799 | Msa0517960:CDS |
| TTTCCGCGACGACGCGACAC+CGG | 0.541895 | 3_4:-69726351 | Msa0517960:five_prime_UTR |
| GACGACGCGACACCGGCGAT+GGG | 0.543061 | 3_4:-69726344 | Msa0517960:exon |
| ATGTTGATTGTAAGGCTAGC+GGG | 0.543712 | 3_4:-69725899 | Msa0517960:CDS |
| GTCGACAGCATGGTGGCGAA+TGG | 0.546868 | 3_4:+69724480 | None:intergenic |
| GAAAACGTCGCAGCCTCCAC+CGG | 0.548883 | 3_4:-69726275 | Msa0517960:CDS |
| AGTTCATCCACCCATGGAAG+AGG | 0.549041 | 3_4:-69724972 | Msa0517960:CDS |
| TTGGAAGTTCAGATTCCTGT+GGG | 0.550467 | 3_4:-69725684 | Msa0517960:CDS |
| TCTGTTGAGGCCTCTTCCAT+GGG | 0.550666 | 3_4:+69724962 | None:intergenic |
| AAAACCAAATGACTCAAATC+CGG | 0.551319 | 3_4:+69725780 | None:intergenic |
| TGTGTTGATGATAAAGATGA+AGG | 0.555929 | 3_4:-69725741 | Msa0517960:CDS |
| CCACTGTTATTGGATCACTT+AGG | 0.556371 | 3_4:-69726110 | Msa0517960:CDS |
| CTGATCCAAATGCTGCTCGA+AGG | 0.557210 | 3_4:-69723755 | Msa0517960:CDS |
| TGATCCAAATGCTGCTCGAA+GGG | 0.557214 | 3_4:-69723754 | Msa0517960:CDS |
| CGACGACGCGACACCGGCGA+TGG | 0.558334 | 3_4:-69726345 | Msa0517960:exon |
| GTTGAGGCCTCTTCCATGGG+TGG | 0.564789 | 3_4:+69724965 | None:intergenic |
| AATGCAACTCCAACTGGTGT+TGG | 0.566754 | 3_4:+69724559 | None:intergenic |
| AAATGTGAGCTTCAGTAGGA+AGG | 0.567848 | 3_4:+69724048 | None:intergenic |
| ACTTGGTGGGAAAGCAGCAA+AGG | 0.569837 | 3_4:-69724006 | Msa0517960:CDS |
| TATGGGAAGAGCTCCGGTGG+AGG | 0.573617 | 3_4:+69726262 | None:intergenic |
| AACTCCAACTGGTGTTGGGT+GGG | 0.573638 | 3_4:+69724564 | None:intergenic |
| GTTGATGATAAAGATGAAGG+TGG | 0.575183 | 3_4:-69725738 | Msa0517960:CDS |
| ATATCATGCACAGCTACTTG+AGG | 0.576788 | 3_4:+69723626 | None:intergenic |
| CAATCCCACCCAACACCAGT+TGG | 0.579168 | 3_4:-69724568 | Msa0517960:CDS |
| CTGCAAATAGCAGTAACTGA+AGG | 0.581700 | 3_4:-69725588 | Msa0517960:CDS |
| TCTGAAATGTGAGCTTCAGT+AGG | 0.589451 | 3_4:+69724044 | None:intergenic |
| GTCTTCCAGATTGCTTAAAG+CGG | 0.589611 | 3_4:-69725626 | Msa0517960:CDS |
| TTTAACCCCAGGAAGGGCGT+GGG | 0.600418 | 3_4:-69725329 | Msa0517960:CDS |
| TACTTTCAAAGGCATAAACA+TGG | 0.601077 | 3_4:-69723688 | Msa0517960:three_prime_UTR |
| GATTGATATGCTCTACCAGT+AGG | 0.602314 | 3_4:+69724586 | None:intergenic |
| GGTGGAAATAGATGAAACAC+TGG | 0.602986 | 3_4:+69724759 | None:intergenic |
| AAGTATGGGAAGAGCTCCGG+TGG | 0.604240 | 3_4:+69726259 | None:intergenic |
| GATGGGAGCATCAACTTCGT+CGG | 0.606622 | 3_4:-69726327 | Msa0517960:CDS |
| CTTGGAAGTTCAGATTCCTG+TGG | 0.609976 | 3_4:-69725685 | Msa0517960:CDS |
| AGATGAAATTTCTACAACAG+AGG | 0.611557 | 3_4:+69725369 | None:intergenic |
| TACAACAGAGGAGGAATCAG+AGG | 0.612942 | 3_4:+69725381 | None:intergenic |
| TCGCCGGTGTCGCGTCGTCG+CGG | 0.616232 | 3_4:+69726348 | None:intergenic |
| ATTTCAGAAGTTGAAGTTTG+GGG | 0.618427 | 3_4:-69724029 | Msa0517960:CDS |
| TGAAATTTCTACAACAGAGG+AGG | 0.621735 | 3_4:+69725372 | None:intergenic |
| AATTGCCCACGCCCTTCCTG+GGG | 0.622329 | 3_4:+69725324 | None:intergenic |
| CCAAAATTAGCAACGGACCG+TGG | 0.626038 | 3_4:+69724916 | None:intergenic |
| CAACTCCAACTGGTGTTGGG+TGG | 0.627938 | 3_4:+69724563 | None:intergenic |
| CTCTACCAGTAGGATGCAAG+TGG | 0.628756 | 3_4:+69724596 | None:intergenic |
| TTTAAGCAATCTGGAAGACA+TGG | 0.630304 | 3_4:+69725630 | None:intergenic |
| ATCTACAACATACCAGTAGG+TGG | 0.634941 | 3_4:+69724741 | None:intergenic |
| TGTTATAGTTCATCCACCCA+TGG | 0.637411 | 3_4:-69724978 | Msa0517960:intron |
| TTGATGATAAAGATGAAGGT+GGG | 0.637687 | 3_4:-69725737 | Msa0517960:CDS |
| GTTCGCCGATTCCGAAACAC+AGG | 0.639152 | 3_4:-69726219 | Msa0517960:CDS |
| CAAGTAACGAACTTCCCCAC+AGG | 0.644769 | 3_4:+69725669 | None:intergenic |
| CATGAGACCAAAATCTGTTG+AGG | 0.647781 | 3_4:+69724949 | None:intergenic |
| TAAAGAATATAAACAACCAG+AGG | 0.658602 | 3_4:+69724785 | None:intergenic |
| GCAGCAACCAAAATTAGCAA+CGG | 0.664965 | 3_4:+69724909 | None:intergenic |
| GCAAATAGCAGTAACTGAAG+GGG | 0.666138 | 3_4:-69725586 | Msa0517960:intron |
| CCTAAGTGATCCAATAACAG+TGG | 0.673311 | 3_4:+69726110 | None:intergenic |
| AAGTTCTGGAATTGGTCACG+AGG | 0.684128 | 3_4:-69724886 | Msa0517960:CDS |
| TCTCATGTTGAAGGTTACCA+CGG | 0.687708 | 3_4:-69724933 | Msa0517960:CDS |
| AGTTCTGGAATTGGTCACGA+GGG | 0.699482 | 3_4:-69724885 | Msa0517960:CDS |
| GAAGACATTTGCAAACTGGG+AGG | 0.701015 | 3_4:-69723811 | Msa0517960:CDS |
| GCAAGAGAAACACATGCTTG+GGG | 0.703306 | 3_4:+69725868 | None:intergenic |
| GTGGAAATAGATGAAACACT+GGG | 0.704586 | 3_4:+69724760 | None:intergenic |
| GTCGACAAAACTTATCAGAG+TGG | 0.712497 | 3_4:-69724463 | Msa0517960:CDS |
| GATGTTGATTGTAAGGCTAG+CGG | 0.732573 | 3_4:-69725900 | Msa0517960:CDS |
| TGGAAGTTCAGATTCCTGTG+GGG | 0.754285 | 3_4:-69725683 | Msa0517960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGTTTCTTATAAATGTTT+TGG | - | chr3_4:69724501-69724520 | Msa0517960:CDS | 15.0% |
| !! | TTTATTTGAATAGAATTGAT+AGG | - | chr3_4:69724910-69724929 | Msa0517960:CDS | 15.0% |
| !! | TTCAGAATTATTATGAAAAA+TGG | - | chr3_4:69725688-69725707 | Msa0517960:CDS | 15.0% |
| !!! | CATTTTTGTAGATTTTCTAT+GGG | + | chr3_4:69723806-69723825 | None:intergenic | 20.0% |
| !!! | TTTTTCATTTCTGATGAAAA+TGG | - | chr3_4:69723926-69723945 | Msa0517960:intron | 20.0% |
| !! | TGATGAAAATGGAATAAATT+GGG | - | chr3_4:69723937-69723956 | Msa0517960:intron | 20.0% |
| !! | TGATTAAATAATTTCTTGAC+TGG | - | chr3_4:69724570-69724589 | Msa0517960:CDS | 20.0% |
| !! | GATTAAATAATTTCTTGACT+GGG | - | chr3_4:69724571-69724590 | Msa0517960:CDS | 20.0% |
| !!! | TGAATGATAACCTTATTTAT+CGG | - | chr3_4:69724760-69724779 | Msa0517960:CDS | 20.0% |
| !!! | TCTCTTTTTAAATGTTGAAA+AGG | - | chr3_4:69724854-69724873 | Msa0517960:CDS | 20.0% |
| !!! | ATATTTTTACAAGATTTACC+AGG | - | chr3_4:69724956-69724975 | Msa0517960:CDS | 20.0% |
| !! | GAAAATAAAGATATCTTCTA+TGG | - | chr3_4:69725184-69725203 | Msa0517960:intron | 20.0% |
| !! | TTAATATTGTAACAGCTAAT+TGG | + | chr3_4:69726084-69726103 | None:intergenic | 20.0% |
| !! | GCATTTTTGTAGATTTTCTA+TGG | + | chr3_4:69723807-69723826 | None:intergenic | 25.0% |
| ! | CTGATGAAAATGGAATAAAT+TGG | - | chr3_4:69723936-69723955 | Msa0517960:intron | 25.0% |
| ! | AGCAAATTTAGATGTTCATT+TGG | - | chr3_4:69724057-69724076 | Msa0517960:intron | 25.0% |
| !! | ATTTTAAATCAAGTAGCCAT+TGG | - | chr3_4:69724447-69724466 | Msa0517960:CDS | 25.0% |
| !!! | CTATTTTTGTTTAGTAGTCT+CGG | - | chr3_4:69724816-69724835 | Msa0517960:CDS | 25.0% |
| ! | TGGTAGAAAATAATGTCAAT+AGG | + | chr3_4:69724996-69725015 | None:intergenic | 25.0% |
| ! | TAAAGAATATAAACAACCAG+AGG | + | chr3_4:69725212-69725231 | None:intergenic | 25.0% |
| ! | TCTGGTTGTTTATATTCTTT+AGG | - | chr3_4:69725211-69725230 | Msa0517960:intron | 25.0% |
| ! | ATAAATATTCTCTCATTTCC+CGG | + | chr3_4:69725471-69725490 | None:intergenic | 25.0% |
| ! | ATGCATGCATTAATCATATA+TGG | + | chr3_4:69725626-69725645 | None:intergenic | 25.0% |
| ! | AGATTCTATATGTTATCTGA+TGG | - | chr3_4:69725656-69725675 | Msa0517960:CDS | 25.0% |
| ! | CACTATTGTGATATAATGAA+GGG | + | chr3_4:69725751-69725770 | None:intergenic | 25.0% |
| ! | ACACTATTGTGATATAATGA+AGG | + | chr3_4:69725752-69725771 | None:intergenic | 25.0% |
| ! | CTAACTGGTTAAAATTATTG+TGG | - | chr3_4:69725836-69725855 | Msa0517960:CDS | 25.0% |
| ! | GTGATTGTTCTTTATATTTC+AGG | - | chr3_4:69726337-69726356 | Msa0517960:exon | 25.0% |
| !!! | GAGAAAGCTTTTTGAAGTAT+GGG | + | chr3_4:69723752-69723771 | None:intergenic | 30.0% |
| !! | AATTGGGTTGAATTTGTGAA+AGG | - | chr3_4:69723953-69723972 | Msa0517960:CDS | 30.0% |
| ! | CTATAACAAGTGTTGTTCTA+GGG | - | chr3_4:69723976-69723995 | Msa0517960:CDS | 30.0% |
| ! | ATCTGATGATGTTGATTGTA+AGG | - | chr3_4:69724087-69724106 | Msa0517960:intron | 30.0% |
| TTCTCTTGCTTTCAATTTGT+TGG | - | chr3_4:69724140-69724159 | Msa0517960:intron | 30.0% | |
| ! | TCTCTTGCTTTCAATTTGTT+GGG | - | chr3_4:69724141-69724160 | Msa0517960:intron | 30.0% |
| TGGGATTGTAGAAATTTGAA+AGG | - | chr3_4:69724172-69724191 | Msa0517960:intron | 30.0% | |
| GGGATTGTAGAAATTTGAAA+GGG | - | chr3_4:69724173-69724192 | Msa0517960:intron | 30.0% | |
| GTAGAAATTTGAAAGGGAAA+AGG | - | chr3_4:69724179-69724198 | Msa0517960:intron | 30.0% | |
| AAAACCAAATGACTCAAATC+CGG | + | chr3_4:69724217-69724236 | None:intergenic | 30.0% | |
| !!! | TTTGAGTCATTTGGTTTTGT+CGG | - | chr3_4:69724219-69724238 | Msa0517960:intron | 30.0% |
| !! | TGTGTTGATGATAAAGATGA+AGG | - | chr3_4:69724253-69724272 | Msa0517960:intron | 30.0% |
| ! | TTGATGATAAAGATGAAGGT+GGG | - | chr3_4:69724257-69724276 | Msa0517960:intron | 30.0% |
| AATAAGTGCTTATCAACCAA+TGG | + | chr3_4:69724466-69724485 | None:intergenic | 30.0% | |
| TATAACCATAAGCATTTCAG+TGG | + | chr3_4:69724541-69724560 | None:intergenic | 30.0% | |
| TAAATAATTTCTTGACTGGG+TGG | - | chr3_4:69724574-69724593 | Msa0517960:CDS | 30.0% | |
| AGATGAAATTTCTACAACAG+AGG | + | chr3_4:69724628-69724647 | None:intergenic | 30.0% | |
| ! | TTTTTACAAGATTTACCAGG+CGG | - | chr3_4:69724959-69724978 | Msa0517960:CDS | 30.0% |
| !! | GCAATCAGGAAATTTGTTAT+AGG | - | chr3_4:69725139-69725158 | Msa0517960:intron | 30.0% |
| ! | TTCAAGACCTTCATTTGTTA+GGG | + | chr3_4:69725167-69725186 | None:intergenic | 30.0% |
| TTTCAAGACCTTCATTTGTT+AGG | + | chr3_4:69725168-69725187 | None:intergenic | 30.0% | |
| AGCAAAACAGAAACAACAAA+AGG | + | chr3_4:69725290-69725309 | None:intergenic | 30.0% | |
| ! | TCTGTTTTGCTCTTTTTTTC+CGG | - | chr3_4:69725299-69725318 | Msa0517960:CDS | 30.0% |
| ATAGTAAACACCTAGTTTCA+GGG | + | chr3_4:69725347-69725366 | None:intergenic | 30.0% | |
| AATAGTAAACACCTAGTTTC+AGG | + | chr3_4:69725348-69725367 | None:intergenic | 30.0% | |
| TCATATATGGTTACAAGTTG+TGG | + | chr3_4:69725613-69725632 | None:intergenic | 30.0% | |
| AAACCAACAAGTCAGAAATA+TGG | + | chr3_4:69725907-69725926 | None:intergenic | 30.0% | |
| TTGGTTTATCTTGTGTTTCA+GGG | - | chr3_4:69725920-69725939 | Msa0517960:CDS | 30.0% | |
| ACATTTCAGAAGTTGAAGTT+TGG | - | chr3_4:69725963-69725982 | Msa0517960:CDS | 30.0% | |
| CATTTCAGAAGTTGAAGTTT+GGG | - | chr3_4:69725964-69725983 | Msa0517960:CDS | 30.0% | |
| ATTTCAGAAGTTGAAGTTTG+GGG | - | chr3_4:69725965-69725984 | Msa0517960:CDS | 30.0% | |
| TTGTAACAGCTAATTGGATA+GGG | + | chr3_4:69726078-69726097 | None:intergenic | 30.0% | |
| ATTGTAACAGCTAATTGGAT+AGG | + | chr3_4:69726079-69726098 | None:intergenic | 30.0% | |
| ! | ATATCCATCATCATTTTCTC+AGG | + | chr3_4:69726214-69726233 | None:intergenic | 30.0% |
| ! | TACTTTCAAAGGCATAAACA+TGG | - | chr3_4:69726306-69726325 | Msa0517960:CDS | 30.0% |
| !!! | GGAGAAAGCTTTTTGAAGTA+TGG | + | chr3_4:69723753-69723772 | None:intergenic | 35.0% |
| ! | GCTATAACAAGTGTTGTTCT+AGG | - | chr3_4:69723975-69723994 | Msa0517960:CDS | 35.0% |
| !! | AATTTGTTGGGCTATGTCAT+GGG | - | chr3_4:69724153-69724172 | Msa0517960:intron | 35.0% |
| GAAAAGGAATTTGAGTGTAC+CGG | - | chr3_4:69724195-69724214 | Msa0517960:intron | 35.0% | |
| !! | GTTGATGATAAAGATGAAGG+TGG | - | chr3_4:69724256-69724275 | Msa0517960:intron | 35.0% |
| TTTAAGCAATCTGGAAGACA+TGG | + | chr3_4:69724367-69724386 | None:intergenic | 35.0% | |
| ! | AAATACCGCTTTAAGCAATC+TGG | + | chr3_4:69724376-69724395 | None:intergenic | 35.0% |
| TGCAAATAGCAGTAACTGAA+GGG | - | chr3_4:69724407-69724426 | Msa0517960:intron | 35.0% | |
| TCTTACCACTGAAATGCTTA+TGG | - | chr3_4:69724533-69724552 | Msa0517960:CDS | 35.0% | |
| TGAAATTTCTACAACAGAGG+AGG | + | chr3_4:69724625-69724644 | None:intergenic | 35.0% | |
| !!! | GTATGTGATATTTTAACCCC+AGG | - | chr3_4:69724654-69724673 | Msa0517960:intron | 35.0% |
| !!! | TGATATTTTAACCCCAGGAA+GGG | - | chr3_4:69724659-69724678 | Msa0517960:intron | 35.0% |
| GAGAGACAAACCGATAAATA+AGG | + | chr3_4:69724773-69724792 | None:intergenic | 35.0% | |
| !! | AGATTTTGGTCTCATGTTGA+AGG | - | chr3_4:69725052-69725071 | Msa0517960:intron | 35.0% |
| GTGGAAATAGATGAAACACT+GGG | + | chr3_4:69725237-69725256 | None:intergenic | 35.0% | |
| TTTCATCTATTTCCACCTAC+TGG | - | chr3_4:69725241-69725260 | Msa0517960:CDS | 35.0% | |
| ACTAGGTGTTTACTATTGAC+AGG | - | chr3_4:69725351-69725370 | Msa0517960:CDS | 35.0% | |
| GTGTTTACTATTGACAGGTA+AGG | - | chr3_4:69725356-69725375 | Msa0517960:CDS | 35.0% | |
| GGTTAAAATTATTGTGGCCA+TGG | - | chr3_4:69725842-69725861 | Msa0517960:CDS | 35.0% | |
| AAAATTATTGTGGCCATGGA+CGG | - | chr3_4:69725846-69725865 | Msa0517960:CDS | 35.0% | |
| AAATATGGAGTCATGTAGAC+AGG | + | chr3_4:69725892-69725911 | None:intergenic | 35.0% | |
| ! | ACTCCATATTTCTGACTTGT+TGG | - | chr3_4:69725901-69725920 | Msa0517960:CDS | 35.0% |
| ! | GTTGGTTTATCTTGTGTTTC+AGG | - | chr3_4:69725919-69725938 | Msa0517960:CDS | 35.0% |
| TTCACCTGAGAAAATGATGA+TGG | - | chr3_4:69726207-69726226 | Msa0517960:CDS | 35.0% | |
| ! | ACATATATCGTTGCTTTGCT+TGG | - | chr3_4:69726278-69726297 | Msa0517960:CDS | 35.0% |
| ! | GTTTTCTGCTTCCTGTTGTT+CGG | + | chr3_4:69723705-69723724 | None:intergenic | 40.0% |
| AATTGCCTGTGTTTCGGAAT+CGG | + | chr3_4:69723783-69723802 | None:intergenic | 40.0% | |
| TATGGGAATTGCCTGTGTTT+CGG | + | chr3_4:69723789-69723808 | None:intergenic | 40.0% | |
| AATCAGTTGTGTTCTCGGTA+TGG | + | chr3_4:69723859-69723878 | None:intergenic | 40.0% | |
| CAACGAATCAGTTGTGTTCT+CGG | + | chr3_4:69723864-69723883 | None:intergenic | 40.0% | |
| TGATTCGTTGCCACTGTTAT+TGG | - | chr3_4:69723874-69723893 | Msa0517960:intron | 40.0% | |
| CCTAAGTGATCCAATAACAG+TGG | + | chr3_4:69723887-69723906 | None:intergenic | 40.0% | |
| CCACTGTTATTGGATCACTT+AGG | - | chr3_4:69723884-69723903 | Msa0517960:intron | 40.0% | |
| ! | GATGTTGATTGTAAGGCTAG+CGG | - | chr3_4:69724094-69724113 | Msa0517960:intron | 40.0% |
| ! | ATGTTGATTGTAAGGCTAGC+GGG | - | chr3_4:69724095-69724114 | Msa0517960:intron | 40.0% |
| AGCAAGAGAAACACATGCTT+GGG | + | chr3_4:69724130-69724149 | None:intergenic | 40.0% | |
| AAGCAAGAGAAACACATGCT+TGG | + | chr3_4:69724131-69724150 | None:intergenic | 40.0% | |
| !! | CAATTTGTTGGGCTATGTCA+TGG | - | chr3_4:69724152-69724171 | Msa0517960:intron | 40.0% |
| TGTACCGGATTTGAGTCATT+TGG | - | chr3_4:69724210-69724229 | Msa0517960:intron | 40.0% | |
| ! | ATGAAGGTGGGTTTGATGTT+TGG | - | chr3_4:69724269-69724288 | Msa0517960:intron | 40.0% |
| ! | TGAAGGTGGGTTTGATGTTT+GGG | - | chr3_4:69724270-69724289 | Msa0517960:intron | 40.0% |
| !! | GGATTGTGATGTTTTGAGCT+TGG | - | chr3_4:69724291-69724310 | Msa0517960:intron | 40.0% |
| TTGGAAGTTCAGATTCCTGT+GGG | - | chr3_4:69724310-69724329 | Msa0517960:intron | 40.0% | |
| GTCTTCCAGATTGCTTAAAG+CGG | - | chr3_4:69724368-69724387 | Msa0517960:intron | 40.0% | |
| CTGCAAATAGCAGTAACTGA+AGG | - | chr3_4:69724406-69724425 | Msa0517960:intron | 40.0% | |
| GCAAATAGCAGTAACTGAAG+GGG | - | chr3_4:69724408-69724427 | Msa0517960:intron | 40.0% | |
| !!! | GTGATATTTTAACCCCAGGA+AGG | - | chr3_4:69724658-69724677 | Msa0517960:intron | 40.0% |
| TGGGTGGATGAACTATAACA+TGG | + | chr3_4:69725016-69725035 | None:intergenic | 40.0% | |
| TGTTATAGTTCATCCACCCA+TGG | - | chr3_4:69725016-69725035 | Msa0517960:intron | 40.0% | |
| CATGAGACCAAAATCTGTTG+AGG | + | chr3_4:69725048-69725067 | None:intergenic | 40.0% | |
| TCTCATGTTGAAGGTTACCA+CGG | - | chr3_4:69725061-69725080 | Msa0517960:intron | 40.0% | |
| GCAGCAACCAAAATTAGCAA+CGG | + | chr3_4:69725088-69725107 | None:intergenic | 40.0% | |
| !!! | ATTTTGGTTGCTGCAAGTTC+TGG | - | chr3_4:69725094-69725113 | Msa0517960:intron | 40.0% |
| ATAGGTGCCCTAACAAATGA+AGG | - | chr3_4:69725157-69725176 | Msa0517960:intron | 40.0% | |
| GATATCTTCTATGGAACCTC+TGG | - | chr3_4:69725193-69725212 | Msa0517960:intron | 40.0% | |
| GGTGGAAATAGATGAAACAC+TGG | + | chr3_4:69725238-69725257 | None:intergenic | 40.0% | |
| ATCTACAACATACCAGTAGG+TGG | + | chr3_4:69725256-69725275 | None:intergenic | 40.0% | |
| GACATCTACAACATACCAGT+AGG | + | chr3_4:69725259-69725278 | None:intergenic | 40.0% | |
| CAGACAATCATATCACAGTC+CGG | + | chr3_4:69725321-69725340 | None:intergenic | 40.0% | |
| ! | TTGTCTGAAACCCTGAAACT+AGG | - | chr3_4:69725334-69725353 | Msa0517960:CDS | 40.0% |
| GATTGATATGCTCTACCAGT+AGG | + | chr3_4:69725411-69725430 | None:intergenic | 40.0% | |
| !! | GATAAGTTTTGTCGACAGCA+TGG | + | chr3_4:69725527-69725546 | None:intergenic | 40.0% |
| GTCGACAAAACTTATCAGAG+TGG | - | chr3_4:69725531-69725550 | Msa0517960:intron | 40.0% | |
| ! | TGAAGAAAGCGTACACTAAC+TGG | - | chr3_4:69725821-69725840 | Msa0517960:CDS | 40.0% |
| AAATGTGAGCTTCAGTAGGA+AGG | + | chr3_4:69725949-69725968 | None:intergenic | 40.0% | |
| ! | TCTGAAATGTGAGCTTCAGT+AGG | + | chr3_4:69725953-69725972 | None:intergenic | 40.0% |
| AACAGCTAATTGGATAGGGT+AGG | + | chr3_4:69726074-69726093 | None:intergenic | 40.0% | |
| ACCTGAAGACATTTGCAAAC+TGG | - | chr3_4:69726179-69726198 | Msa0517960:CDS | 40.0% | |
| CCTGAAGACATTTGCAAACT+GGG | - | chr3_4:69726180-69726199 | Msa0517960:CDS | 40.0% | |
| !! | GCTTGGTGCAATACTTTCAA+AGG | - | chr3_4:69726295-69726314 | Msa0517960:CDS | 40.0% |
| ATATCATGCACAGCTACTTG+AGG | + | chr3_4:69726371-69726390 | None:intergenic | 40.0% | |
| AACAGTTTCTGCCGAACAAC+AGG | - | chr3_4:69723691-69723710 | Msa0517960:three_prime_UTR | 45.0% | |
| TTGAAGTATGGGAAGAGCTC+CGG | + | chr3_4:69723741-69723760 | None:intergenic | 45.0% | |
| GCAAGAGAAACACATGCTTG+GGG | + | chr3_4:69724129-69724148 | None:intergenic | 45.0% | |
| !!! | GAGTCATTTGGTTTTGTCGG+CGG | - | chr3_4:69724222-69724241 | Msa0517960:intron | 45.0% |
| CTTGGAAGTTCAGATTCCTG+TGG | - | chr3_4:69724309-69724328 | Msa0517960:intron | 45.0% | |
| TGGAAGTTCAGATTCCTGTG+GGG | - | chr3_4:69724311-69724330 | Msa0517960:intron | 45.0% | |
| TGTGGGGAAGTTCGTTACTT+GGG | - | chr3_4:69724327-69724346 | Msa0517960:intron | 45.0% | |
| TAATTTCTTGACTGGGTGGC+AGG | - | chr3_4:69724578-69724597 | Msa0517960:CDS | 45.0% | |
| TACAACAGAGGAGGAATCAG+AGG | + | chr3_4:69724616-69724635 | None:intergenic | 45.0% | |
| TCCAGAGCCTTTATTAGCAG+TGG | - | chr3_4:69724729-69724748 | Msa0517960:intron | 45.0% | |
| TCCACTGCTAATAAAGGCTC+TGG | + | chr3_4:69724733-69724752 | None:intergenic | 45.0% | |
| TCCAGCTCCACTGCTAATAA+AGG | + | chr3_4:69724739-69724758 | None:intergenic | 45.0% | |
| ! | TAGGCATTATGTTTTCCGCC+TGG | + | chr3_4:69724977-69724996 | None:intergenic | 45.0% |
| ! | GAAGAGGCCTCAACAGATTT+TGG | - | chr3_4:69725038-69725057 | Msa0517960:intron | 45.0% |
| !! | GTTGCTGCAAGTTCTGGAAT+TGG | - | chr3_4:69725100-69725119 | Msa0517960:intron | 45.0% |
| !! | AAGTTCTGGAATTGGTCACG+AGG | - | chr3_4:69725108-69725127 | Msa0517960:intron | 45.0% |
| !! | AGTTCTGGAATTGGTCACGA+GGG | - | chr3_4:69725109-69725128 | Msa0517960:intron | 45.0% |
| ACGAGGGAAATTCTGCAATC+AGG | - | chr3_4:69725125-69725144 | Msa0517960:intron | 45.0% | |
| ATGCAACTCCAACTGGTGTT+GGG | + | chr3_4:69725437-69725456 | None:intergenic | 45.0% | |
| AATGCAACTCCAACTGGTGT+TGG | + | chr3_4:69725438-69725457 | None:intergenic | 45.0% | |
| ACACCAGTTGGAGTTGCATT+TGG | - | chr3_4:69725438-69725457 | Msa0517960:intron | 45.0% | |
| ! | AGTTGCATTTGGTGGAACTC+CGG | - | chr3_4:69725449-69725468 | Msa0517960:intron | 45.0% |
| !! | AAGTTTTGTCGACAGCATGG+TGG | + | chr3_4:69725524-69725543 | None:intergenic | 45.0% |
| TGGTTCTCTTCTTCCAGATC+AGG | - | chr3_4:69725551-69725570 | Msa0517960:intron | 45.0% | |
| CAACAGAATCGTACCTGATC+TGG | + | chr3_4:69725567-69725586 | None:intergenic | 45.0% | |
| CATTAGTCGTAATCCGTCCA+TGG | + | chr3_4:69725862-69725881 | None:intergenic | 45.0% | |
| GAAGTTGAAGTTTGGGGACT+TGG | - | chr3_4:69725971-69725990 | Msa0517960:CDS | 45.0% | |
| ! | TTGAAGTTTGGGGACTTGGT+GGG | - | chr3_4:69725975-69725994 | Msa0517960:CDS | 45.0% |
| CCCAGTTTGCAAATGTCTTC+AGG | + | chr3_4:69726183-69726202 | None:intergenic | 45.0% | |
| GAAGACATTTGCAAACTGGG+AGG | - | chr3_4:69726183-69726202 | Msa0517960:CDS | 45.0% | |
| TGATCCAAATGCTGCTCGAA+GGG | - | chr3_4:69726240-69726259 | Msa0517960:CDS | 45.0% | |
| !! | GATGGGAGCATCAACTTCGT+CGG | - | chr3_4:69723667-69723686 | Msa0517960:three_prime_UTR | 50.0% |
| TGTTTCGGAATCGGCGAACT+TGG | + | chr3_4:69723774-69723793 | None:intergenic | 50.0% | |
| GAAACACATGCTTGGGGAGA+AGG | + | chr3_4:69724123-69724142 | None:intergenic | 50.0% | |
| CAAGTAACGAACTTCCCCAC+AGG | + | chr3_4:69724328-69724347 | None:intergenic | 50.0% | |
| CTGTGGGGAAGTTCGTTACT+TGG | - | chr3_4:69724326-69724345 | Msa0517960:intron | 50.0% | |
| GCCTTTATTAGCAGTGGAGC+TGG | - | chr3_4:69724735-69724754 | Msa0517960:intron | 50.0% | |
| AGTTCATCCACCCATGGAAG+AGG | - | chr3_4:69725022-69725041 | Msa0517960:intron | 50.0% | |
| TCTGTTGAGGCCTCTTCCAT+GGG | + | chr3_4:69725035-69725054 | None:intergenic | 50.0% | |
| ATCTGTTGAGGCCTCTTCCA+TGG | + | chr3_4:69725036-69725055 | None:intergenic | 50.0% | |
| CCAAAATTAGCAACGGACCG+TGG | + | chr3_4:69725081-69725100 | None:intergenic | 50.0% | |
| ! | CCACGGTCCGTTGCTAATTT+TGG | - | chr3_4:69725078-69725097 | Msa0517960:intron | 50.0% |
| TACAGCCACTTGCATCCTAC+TGG | - | chr3_4:69725393-69725412 | Msa0517960:CDS | 50.0% | |
| CTCTACCAGTAGGATGCAAG+TGG | + | chr3_4:69725401-69725420 | None:intergenic | 50.0% | |
| ! | AACTCCAACTGGTGTTGGGT+GGG | + | chr3_4:69725433-69725452 | None:intergenic | 50.0% |
| CCACCAAATGCAACTCCAAC+TGG | + | chr3_4:69725444-69725463 | None:intergenic | 50.0% | |
| CCAGTTGGAGTTGCATTTGG+TGG | - | chr3_4:69725441-69725460 | Msa0517960:intron | 50.0% | |
| ! | GTTGCATTTGGTGGAACTCC+GGG | - | chr3_4:69725450-69725469 | Msa0517960:intron | 50.0% |
| GTTGAAGTTTGGGGACTTGG+TGG | - | chr3_4:69725974-69725993 | Msa0517960:CDS | 50.0% | |
| ! | ACTTGGTGGGAAAGCAGCAA+AGG | - | chr3_4:69725988-69726007 | Msa0517960:CDS | 50.0% |
| CTGATCCAAATGCTGCTCGA+AGG | - | chr3_4:69726239-69726258 | Msa0517960:CDS | 50.0% | |
| TCTTCCCTTCGAGCAGCATT+TGG | + | chr3_4:69726247-69726266 | None:intergenic | 50.0% | |
| !! | GAAGTTGATGCTCCCATCGC+CGG | + | chr3_4:69723665-69723684 | None:intergenic | 55.0% |
| AAGTATGGGAAGAGCTCCGG+TGG | + | chr3_4:69723738-69723757 | None:intergenic | 55.0% | |
| !! | GTTCGCCGATTCCGAAACAC+AGG | - | chr3_4:69723775-69723794 | Msa0517960:CDS | 55.0% |
| TGCTTCAGTTTCGCTCGCGA+AGG | - | chr3_4:69723824-69723843 | Msa0517960:intron | 55.0% | |
| GACTGGGTGGCAGGATGAAT+TGG | - | chr3_4:69724587-69724606 | Msa0517960:CDS | 55.0% | |
| ! | TTTTAACCCCAGGAAGGGCG+TGG | - | chr3_4:69724664-69724683 | Msa0517960:intron | 55.0% |
| ! | TTTAACCCCAGGAAGGGCGT+GGG | - | chr3_4:69724665-69724684 | Msa0517960:intron | 55.0% |
| AAATTGCCCACGCCCTTCCT+GGG | + | chr3_4:69724674-69724693 | None:intergenic | 55.0% | |
| CAATCCCACCCAACACCAGT+TGG | - | chr3_4:69725426-69725445 | Msa0517960:intron | 55.0% | |
| ! | CAACTCCAACTGGTGTTGGG+TGG | + | chr3_4:69725434-69725453 | None:intergenic | 55.0% |
| GAAAACGTCGCAGCCTCCAC+CGG | - | chr3_4:69723719-69723738 | Msa0517960:three_prime_UTR | 60.0% | |
| TATGGGAAGAGCTCCGGTGG+AGG | + | chr3_4:69723735-69723754 | None:intergenic | 60.0% | |
| AATTGCCCACGCCCTTCCTG+GGG | + | chr3_4:69724673-69724692 | None:intergenic | 60.0% | |
| GAAATTGCCCACGCCCTTCC+TGG | + | chr3_4:69724675-69724694 | None:intergenic | 60.0% | |
| GTTGAGGCCTCTTCCATGGG+TGG | + | chr3_4:69725032-69725051 | None:intergenic | 60.0% | |
| ! | GTCGACAGCATGGTGGCGAA+TGG | + | chr3_4:69725517-69725536 | None:intergenic | 60.0% |
| TTTCCGCGACGACGCGACAC+CGG | - | chr3_4:69723643-69723662 | Msa0517960:three_prime_UTR | 65.0% | |
| GACGACGCGACACCGGCGAT+GGG | - | chr3_4:69723650-69723669 | Msa0517960:three_prime_UTR | 70.0% | |
| !! | TCGCCGGTGTCGCGTCGTCG+CGG | + | chr3_4:69723649-69723668 | None:intergenic | 75.0% |
| CGACGACGCGACACCGGCGA+TGG | - | chr3_4:69723649-69723668 | Msa0517960:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 69723591 | 69726425 | 69723591 | ID=Msa0517960;Name=Msa0517960 |
| chr3_4 | mRNA | 69723591 | 69726425 | 69723591 | ID=Msa0517960-mRNA-1;Parent=Msa0517960;Name=Msa0517960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=77|1|1|1|1|1|6|152|535 |
| chr3_4 | exon | 69723591 | 69723841 | 69723591 | ID=Msa0517960-mRNA-1:exon:18664;Parent=Msa0517960-mRNA-1 |
| chr3_4 | exon | 69723950 | 69724075 | 69723950 | ID=Msa0517960-mRNA-1:exon:18663;Parent=Msa0517960-mRNA-1 |
| chr3_4 | exon | 69724444 | 69724643 | 69724444 | ID=Msa0517960-mRNA-1:exon:18662;Parent=Msa0517960-mRNA-1 |
| chr3_4 | exon | 69724754 | 69724992 | 69724754 | ID=Msa0517960-mRNA-1:exon:18661;Parent=Msa0517960-mRNA-1 |
| chr3_4 | exon | 69725235 | 69725416 | 69725235 | ID=Msa0517960-mRNA-1:exon:18660;Parent=Msa0517960-mRNA-1 |
| chr3_4 | exon | 69725587 | 69726425 | 69725587 | ID=Msa0517960-mRNA-1:exon:18659;Parent=Msa0517960-mRNA-1 |
| chr3_4 | five_prime_UTR | 69726349 | 69726425 | 69726349 | ID=Msa0517960-mRNA-1:five_prime_utr;Parent=Msa0517960-mRNA-1 |
| chr3_4 | CDS | 69725587 | 69726348 | 69725587 | ID=Msa0517960-mRNA-1:cds;Parent=Msa0517960-mRNA-1 |
| chr3_4 | CDS | 69725235 | 69725416 | 69725235 | ID=Msa0517960-mRNA-1:cds;Parent=Msa0517960-mRNA-1 |
| chr3_4 | CDS | 69724754 | 69724992 | 69724754 | ID=Msa0517960-mRNA-1:cds;Parent=Msa0517960-mRNA-1 |
| chr3_4 | CDS | 69724444 | 69724643 | 69724444 | ID=Msa0517960-mRNA-1:cds;Parent=Msa0517960-mRNA-1 |
| chr3_4 | CDS | 69723950 | 69724075 | 69723950 | ID=Msa0517960-mRNA-1:cds;Parent=Msa0517960-mRNA-1 |
| chr3_4 | CDS | 69723743 | 69723841 | 69723743 | ID=Msa0517960-mRNA-1:cds;Parent=Msa0517960-mRNA-1 |
| chr3_4 | three_prime_UTR | 69723591 | 69723742 | 69723591 | ID=Msa0517960-mRNA-1:three_prime_utr;Parent=Msa0517960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
