Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519410 | XP_013461784.1 | 65.136 | 806 | 124 | 9 | 1 | 655 | 1 | 800 | 0.0 | 941 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519410 | sp|F4IXE7|IDM1_ARATH | 31.963 | 438 | 263 | 8 | 222 | 652 | 620 | 1029 | 1.51e-64 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519410 | A0A072V1D9 | 65.136 | 806 | 124 | 9 | 1 | 655 | 1 | 800 | 0.0 | 941 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0519410 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0519410 | Msa1082500 | 0.802698 | 4.959178e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519410 | MtrunA17_Chr3g0134811 | 65.136 | 806 | 124 | 9 | 1 | 655 | 1 | 800 | 0.0 | 941 |
| Msa0519410 | MtrunA17_Chr7g0270101 | 70.533 | 638 | 139 | 4 | 44 | 655 | 182 | 796 | 0.0 | 855 |
| Msa0519410 | MtrunA17_Chr7g0270101 | 44.138 | 145 | 69 | 3 | 22 | 157 | 74 | 215 | 4.84e-18 | 88.6 |
| Msa0519410 | MtrunA17_Chr3g0134821 | 65.954 | 608 | 131 | 4 | 51 | 655 | 307 | 841 | 0.0 | 754 |
| Msa0519410 | MtrunA17_Chr3g0134821 | 35.178 | 253 | 93 | 7 | 1 | 190 | 1 | 245 | 2.36e-21 | 99.4 |
| Msa0519410 | MtrunA17_Chr5g0407211 | 72.998 | 437 | 103 | 5 | 223 | 655 | 3 | 428 | 0.0 | 660 |
| Msa0519410 | MtrunA17_Chr5g0407251 | 72.311 | 437 | 106 | 5 | 223 | 655 | 3 | 428 | 0.0 | 651 |
| Msa0519410 | MtrunA17_Chr3g0134851 | 47.603 | 605 | 167 | 10 | 57 | 650 | 3 | 468 | 5.52e-146 | 432 |
| Msa0519410 | MtrunA17_Chr5g0430361 | 40.596 | 436 | 223 | 8 | 222 | 648 | 651 | 1059 | 3.98e-104 | 340 |
| Msa0519410 | MtrunA17_Chr3g0105291 | 40.920 | 435 | 219 | 9 | 222 | 646 | 602 | 1008 | 7.56e-103 | 338 |
| Msa0519410 | MtrunA17_Chr2g0316251 | 35.347 | 447 | 257 | 8 | 206 | 646 | 746 | 1166 | 1.82e-78 | 272 |
| Msa0519410 | MtrunA17_Chr1g0205451 | 33.179 | 431 | 263 | 5 | 220 | 646 | 603 | 1012 | 3.45e-67 | 239 |
| Msa0519410 | MtrunA17_Chr1g0185491 | 31.808 | 437 | 267 | 7 | 220 | 648 | 809 | 1222 | 7.17e-65 | 233 |
| Msa0519410 | MtrunA17_Chr7g0259981 | 32.492 | 317 | 186 | 6 | 338 | 652 | 8 | 298 | 1.55e-46 | 167 |
| Msa0519410 | MtrunA17_Chr1g0182481 | 26.281 | 449 | 230 | 14 | 256 | 650 | 495 | 896 | 8.45e-42 | 162 |
| Msa0519410 | MtrunA17_Chr7g0265211 | 25.263 | 475 | 234 | 14 | 249 | 653 | 527 | 950 | 5.35e-37 | 148 |
| Msa0519410 | MtrunA17_Chr1g0179841 | 24.837 | 459 | 238 | 13 | 257 | 648 | 386 | 804 | 4.35e-30 | 126 |
| Msa0519410 | MtrunA17_Chr4g0028111 | 25.952 | 420 | 189 | 14 | 272 | 618 | 189 | 559 | 2.02e-27 | 117 |
| Msa0519410 | MtrunA17_Chr4g0055731 | 23.146 | 445 | 241 | 15 | 220 | 646 | 108 | 469 | 2.19e-22 | 100 |
| Msa0519410 | MtrunA17_Chr2g0320451 | 30.928 | 194 | 119 | 7 | 465 | 652 | 843 | 1027 | 5.76e-19 | 91.7 |
| Msa0519410 | MtrunA17_Chr4g0025251 | 26.357 | 258 | 166 | 6 | 412 | 650 | 453 | 705 | 7.98e-18 | 87.8 |
| Msa0519410 | MtrunA17_Chr3g0139561 | 29.775 | 178 | 111 | 5 | 441 | 617 | 191 | 355 | 6.71e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519410 | AT5G58610.4 | 39.955 | 443 | 235 | 8 | 211 | 646 | 359 | 777 | 7.73e-99 | 322 |
| Msa0519410 | AT5G58610.8 | 39.955 | 443 | 235 | 8 | 211 | 646 | 590 | 1008 | 8.46e-97 | 320 |
| Msa0519410 | AT5G58610.2 | 39.955 | 443 | 235 | 8 | 211 | 646 | 590 | 1008 | 8.46e-97 | 320 |
| Msa0519410 | AT5G58610.3 | 39.955 | 443 | 235 | 8 | 211 | 646 | 590 | 1008 | 1.02e-96 | 321 |
| Msa0519410 | AT5G58610.7 | 39.955 | 443 | 235 | 8 | 211 | 646 | 581 | 999 | 1.74e-96 | 320 |
| Msa0519410 | AT5G58610.5 | 39.955 | 443 | 235 | 8 | 211 | 646 | 581 | 999 | 2.36e-96 | 320 |
| Msa0519410 | AT5G58610.6 | 38.269 | 439 | 222 | 8 | 211 | 646 | 581 | 973 | 2.06e-86 | 292 |
| Msa0519410 | AT5G58610.1 | 38.269 | 439 | 222 | 8 | 211 | 646 | 581 | 973 | 3.03e-86 | 292 |
| Msa0519410 | AT5G58610.10 | 39.386 | 391 | 206 | 8 | 211 | 594 | 590 | 956 | 4.10e-82 | 279 |
| Msa0519410 | AT5G58610.9 | 39.386 | 391 | 206 | 8 | 211 | 594 | 581 | 947 | 8.39e-82 | 278 |
| Msa0519410 | AT5G36740.5 | 32.054 | 443 | 257 | 9 | 215 | 646 | 540 | 949 | 2.17e-68 | 243 |
| Msa0519410 | AT5G36740.1 | 32.054 | 443 | 257 | 9 | 215 | 646 | 540 | 949 | 2.17e-68 | 243 |
| Msa0519410 | AT5G58610.11 | 37.960 | 353 | 188 | 8 | 211 | 556 | 581 | 909 | 1.34e-66 | 235 |
| Msa0519410 | AT5G36740.4 | 31.473 | 448 | 263 | 9 | 215 | 646 | 387 | 806 | 6.11e-66 | 234 |
| Msa0519410 | AT3G14980.5 | 31.963 | 438 | 263 | 8 | 222 | 652 | 575 | 984 | 1.38e-65 | 234 |
| Msa0519410 | AT3G14980.6 | 31.963 | 438 | 263 | 8 | 222 | 652 | 620 | 1029 | 1.54e-65 | 234 |
| Msa0519410 | AT3G14980.1 | 31.963 | 438 | 263 | 8 | 222 | 652 | 620 | 1029 | 1.54e-65 | 234 |
| Msa0519410 | AT3G14980.2 | 31.963 | 438 | 263 | 8 | 222 | 652 | 620 | 1029 | 1.54e-65 | 234 |
| Msa0519410 | AT3G14980.3 | 31.963 | 438 | 263 | 8 | 222 | 652 | 620 | 1029 | 2.63e-65 | 233 |
| Msa0519410 | AT1G05380.3 | 32.265 | 437 | 258 | 6 | 220 | 646 | 517 | 925 | 3.89e-65 | 233 |
| Msa0519410 | AT1G05380.1 | 32.265 | 437 | 258 | 6 | 220 | 646 | 517 | 925 | 3.89e-65 | 233 |
| Msa0519410 | AT1G05380.2 | 32.265 | 437 | 258 | 6 | 220 | 646 | 517 | 925 | 3.89e-65 | 233 |
| Msa0519410 | AT4G14920.2 | 30.155 | 451 | 280 | 7 | 208 | 649 | 562 | 986 | 4.54e-60 | 218 |
| Msa0519410 | AT4G14920.1 | 30.155 | 451 | 280 | 7 | 208 | 649 | 562 | 986 | 4.54e-60 | 218 |
| Msa0519410 | AT4G14920.3 | 30.155 | 451 | 280 | 7 | 208 | 649 | 562 | 986 | 4.77e-60 | 218 |
| Msa0519410 | AT5G36670.4 | 29.847 | 459 | 260 | 11 | 215 | 646 | 540 | 963 | 1.30e-59 | 217 |
| Msa0519410 | AT5G36670.5 | 29.847 | 459 | 260 | 11 | 215 | 646 | 540 | 963 | 1.30e-59 | 217 |
| Msa0519410 | AT5G63900.1 | 36.928 | 306 | 169 | 7 | 346 | 648 | 258 | 542 | 2.82e-59 | 209 |
| Msa0519410 | AT5G36670.2 | 31.429 | 385 | 220 | 9 | 215 | 588 | 540 | 891 | 1.92e-57 | 209 |
| Msa0519410 | AT5G36740.2 | 31.429 | 385 | 220 | 9 | 215 | 588 | 540 | 891 | 1.92e-57 | 209 |
| Msa0519410 | AT5G36740.3 | 31.429 | 385 | 220 | 9 | 215 | 588 | 540 | 891 | 1.92e-57 | 209 |
| Msa0519410 | AT5G36670.3 | 29.310 | 464 | 266 | 11 | 215 | 646 | 387 | 820 | 4.23e-57 | 209 |
| Msa0519410 | AT5G36670.1 | 29.310 | 464 | 266 | 11 | 215 | 646 | 540 | 973 | 7.41e-57 | 209 |
| Msa0519410 | AT3G53680.1 | 28.352 | 455 | 211 | 15 | 224 | 621 | 409 | 805 | 3.70e-43 | 167 |
| Msa0519410 | AT3G53680.2 | 28.352 | 455 | 211 | 15 | 224 | 621 | 411 | 807 | 4.32e-43 | 167 |
| Msa0519410 | AT2G37520.1 | 26.283 | 487 | 240 | 15 | 224 | 650 | 392 | 819 | 7.52e-43 | 166 |
| Msa0519410 | AT3G14980.4 | 30.612 | 343 | 203 | 8 | 222 | 557 | 620 | 934 | 8.18e-43 | 166 |
| Msa0519410 | AT2G27980.1 | 25.781 | 512 | 255 | 14 | 217 | 650 | 597 | 1061 | 4.55e-37 | 149 |
| Msa0519410 | AT2G36720.1 | 25.597 | 461 | 230 | 14 | 257 | 647 | 557 | 974 | 5.76e-37 | 148 |
| Msa0519410 | AT2G36720.2 | 25.597 | 461 | 230 | 14 | 257 | 647 | 557 | 974 | 5.76e-37 | 148 |
Find 117 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACATTGTTGTTTGCATTT+TGG | 0.154123 | 3_4:-71473173 | None:intergenic |
| GTTGCAACTATAAGAATTTA+TGG | 0.208645 | 3_4:+71473647 | Msa0519410:CDS |
| CCAACTATTGATGCTTTATC+TGG | 0.251503 | 3_4:+71473515 | Msa0519410:CDS |
| AACACCATCATTATTTGCTT+TGG | 0.281757 | 3_4:-71473009 | None:intergenic |
| TTCTGTCTGAAGAAGCTATT+AGG | 0.283860 | 3_4:+71473350 | Msa0519410:CDS |
| AGGTTGCAAATAAAATAAAT+TGG | 0.285418 | 3_4:+71473384 | Msa0519410:CDS |
| GTTTGTTCTATTTGTGGTTT+GGG | 0.311387 | 3_4:+71473029 | Msa0519410:CDS |
| GCTATTAGGGAAACCAATTA+AGG | 0.314529 | 3_4:+71473364 | Msa0519410:CDS |
| GTTGATAAAGAATAAAGTTT+TGG | 0.317891 | 3_4:+71472671 | Msa0519410:CDS |
| AAAGGTATTCACTTGTTTCT+TGG | 0.322354 | 3_4:+71472649 | Msa0519410:CDS |
| GCATTCCACCTCGTTTGTTT+AGG | 0.323033 | 3_4:+71473086 | Msa0519410:CDS |
| TGTGTAAAGGCTACAAGATT+TGG | 0.323605 | 3_4:+71473257 | Msa0519410:CDS |
| CATGGCCTTGTATTGCTTGA+TGG | 0.358298 | 3_4:+71473942 | Msa0519410:CDS |
| AAGGCCATGTAGGTCTATTC+AGG | 0.369107 | 3_4:-71473928 | None:intergenic |
| TGTTTGTTCTATTTGTGGTT+TGG | 0.372212 | 3_4:+71473028 | Msa0519410:CDS |
| GAAAATGGGTAAAGTCATTT+CGG | 0.376245 | 3_4:+71473625 | Msa0519410:CDS |
| CGTGTTAATTTCACTATCAC+TGG | 0.385095 | 3_4:+71472783 | Msa0519410:CDS |
| CCCTACTTCAGAACTTGCTT+CGG | 0.386240 | 3_4:-71472973 | None:intergenic |
| CCAGATAAAGCATCAATAGT+TGG | 0.388520 | 3_4:-71473515 | None:intergenic |
| AGTAACAATGTTGTCAAAAG+AGG | 0.388998 | 3_4:+71472723 | Msa0519410:CDS |
| GACGAAGAAATTGCTGTTGC+TGG | 0.394454 | 3_4:-71472147 | None:intergenic |
| AGTATTAAAGATGAGTATAA+TGG | 0.402129 | 3_4:+71472566 | Msa0519410:CDS |
| GATGGTGTTTGTTCTATTTG+TGG | 0.402818 | 3_4:+71473023 | Msa0519410:CDS |
| TTAGGTTCTGGGCAGTGCTC+AGG | 0.405256 | 3_4:-71472033 | None:intergenic |
| TTCTTCAATGCAACTCTCGC+AGG | 0.405765 | 3_4:-71472088 | None:intergenic |
| TGCTATTGCTGCTGCTTCCT+CGG | 0.411590 | 3_4:-71472268 | None:intergenic |
| TAGGTCTATTCAGGGATTTA+AGG | 0.416516 | 3_4:-71473919 | None:intergenic |
| CAATTTCTTCGTCTCTGTTA+CGG | 0.419439 | 3_4:+71472157 | Msa0519410:CDS |
| GAGAAGAATTCAGAGGTTTA+CGG | 0.421103 | 3_4:+71472588 | Msa0519410:CDS |
| ATCAAGTTCCAGATGGTGAT+TGG | 0.422173 | 3_4:+71473114 | Msa0519410:CDS |
| GTTGCTGGTGCTGCAGTCGA+AGG | 0.424343 | 3_4:-71472132 | None:intergenic |
| GCTGCTTCCTCGGATTCTCT+TGG | 0.429778 | 3_4:-71472258 | None:intergenic |
| CCCACCGAATTAGTAACTTC+TGG | 0.432390 | 3_4:-71472468 | None:intergenic |
| TCTGTCTGAAGAAGCTATTA+GGG | 0.432712 | 3_4:+71473351 | Msa0519410:CDS |
| TTTCACTATCACTGGATTTG+AGG | 0.433458 | 3_4:+71472791 | Msa0519410:CDS |
| CATAAACGCTTGAATTTCCA+TGG | 0.434704 | 3_4:+71473581 | Msa0519410:CDS |
| ACCATCCACTACTATCTTGT+TGG | 0.436953 | 3_4:+71472839 | Msa0519410:CDS |
| TATAAGAATTTATGGTCAAA+AGG | 0.441015 | 3_4:+71473655 | Msa0519410:CDS |
| TCAGAGTTCGCATGATCAAA+AGG | 0.443317 | 3_4:+71472899 | Msa0519410:CDS |
| CAGATAAAGCATCAATAGTT+GGG | 0.446006 | 3_4:-71473514 | None:intergenic |
| CCATCCACTACTATCTTGTT+GGG | 0.448687 | 3_4:+71472840 | Msa0519410:CDS |
| TGTTGCTTCTGCTGTTTCCT+CGG | 0.450642 | 3_4:-71472202 | None:intergenic |
| TCAGAGGATTGTGGTAGAAG+AGG | 0.451281 | 3_4:+71472540 | Msa0519410:CDS |
| CAGAGGATTGTGGTAGAAGA+GGG | 0.460042 | 3_4:+71472541 | Msa0519410:CDS |
| GACACGTGGACAAAAGTGTT+TGG | 0.461688 | 3_4:+71473818 | Msa0519410:CDS |
| AAATTGACACTTGTCTTCTC+CGG | 0.461887 | 3_4:-71473855 | None:intergenic |
| TGAACCAGAAGTTACTAATT+CGG | 0.467506 | 3_4:+71472464 | Msa0519410:CDS |
| CTGCAGTCGAAGGGTGTTTG+AGG | 0.471352 | 3_4:-71472122 | None:intergenic |
| TCAGGTTCTATGTTGAAATC+AGG | 0.477599 | 3_4:-71472015 | None:intergenic |
| GAGAAACAGTTGACACGCTT+AGG | 0.478300 | 3_4:+71473755 | Msa0519410:CDS |
| AGGCTCATGCTGGTTGTACA+AGG | 0.491245 | 3_4:+71472811 | Msa0519410:CDS |
| CAGAGTTCGCATGATCAAAA+GGG | 0.499686 | 3_4:+71472900 | Msa0519410:CDS |
| GGTCGTTGTTGGACTGTCAA+AGG | 0.500201 | 3_4:+71472871 | Msa0519410:CDS |
| GAGAGGGAAGGTATCAAAGA+GGG | 0.502506 | 3_4:+71472614 | Msa0519410:CDS |
| TACTACGGTGTCAACATCAA+TGG | 0.502626 | 3_4:+71472416 | Msa0519410:CDS |
| TTGTCTTCGATATTGTTCCT+TGG | 0.503462 | 3_4:-71473702 | None:intergenic |
| GGACAAAACCAATCACCATC+TGG | 0.506013 | 3_4:-71473122 | None:intergenic |
| ACTACTATCTTGTTGGGAGA+TGG | 0.506815 | 3_4:+71472846 | Msa0519410:CDS |
| ATCATCAGAAGTTGATTCAT+CGG | 0.513368 | 3_4:-71472304 | None:intergenic |
| ACTGGATTTGAGGCTCATGC+TGG | 0.514944 | 3_4:+71472801 | Msa0519410:CDS |
| AGGCCATGTAGGTCTATTCA+GGG | 0.515704 | 3_4:-71473927 | None:intergenic |
| TTGCTGGTGCTGCAGTCGAA+GGG | 0.516215 | 3_4:-71472131 | None:intergenic |
| GGGAGATGGAAGGTCGTTGT+TGG | 0.519941 | 3_4:+71472860 | Msa0519410:CDS |
| TATCAAAGAGGGAAGGTACA+AGG | 0.524975 | 3_4:+71472625 | Msa0519410:CDS |
| CCACGTGTCTATAGCATCCT+CGG | 0.528623 | 3_4:-71473804 | None:intergenic |
| CCGAAGCAAGTTCTGAAGTA+GGG | 0.528703 | 3_4:+71472973 | Msa0519410:CDS |
| TCTTCAATGCAACTCTCGCA+GGG | 0.531694 | 3_4:-71472087 | None:intergenic |
| GTTACTAATTCGGTGGGTAG+TGG | 0.540215 | 3_4:+71472474 | Msa0519410:CDS |
| TGCAGTCGAAGGGTGTTTGA+GGG | 0.545311 | 3_4:-71472121 | None:intergenic |
| GTCGTTGTTGGACTGTCAAA+GGG | 0.545406 | 3_4:+71472872 | Msa0519410:CDS |
| TCCGAAGCAAGTTCTGAAGT+AGG | 0.548155 | 3_4:+71472972 | Msa0519410:CDS |
| GAGAAGAATTCAGAGGATTG+TGG | 0.552564 | 3_4:+71472531 | Msa0519410:CDS |
| ACGCTTAGGAGTTGAAAGCT+TGG | 0.553379 | 3_4:+71473769 | Msa0519410:CDS |
| TGCGAGAGTTGCATTGAAGA+AGG | 0.557070 | 3_4:+71472090 | Msa0519410:CDS |
| CAAGCAATACAAGGCCATGT+AGG | 0.560703 | 3_4:-71473938 | None:intergenic |
| AACTACCATCAAGCAATACA+AGG | 0.564139 | 3_4:-71473947 | None:intergenic |
| CAGAGGTTTACGGTAAGAGA+GGG | 0.567218 | 3_4:+71472598 | Msa0519410:CDS |
| TCGGTGGGTAGTGGTAAAAG+AGG | 0.571961 | 3_4:+71472483 | Msa0519410:CDS |
| AAATCACATTATAGAAACCA+TGG | 0.572412 | 3_4:-71473598 | None:intergenic |
| GGTAGCCACGAAAACTATCT+CGG | 0.575564 | 3_4:-71473681 | None:intergenic |
| TATAATGGAGAAGAATTCAG+AGG | 0.575599 | 3_4:+71472581 | Msa0519410:CDS |
| TCAGAGGTTTACGGTAAGAG+AGG | 0.577597 | 3_4:+71472597 | Msa0519410:CDS |
| GTAACAATGTTGTCAAAAGA+GGG | 0.581494 | 3_4:+71472724 | Msa0519410:CDS |
| TGTTCTATTTGTGGTTTGGG+AGG | 0.585455 | 3_4:+71473032 | Msa0519410:CDS |
| AAAGCGACCAAGAGAATCCG+AGG | 0.592053 | 3_4:+71472251 | Msa0519410:CDS |
| AGAGAGGGAAGGTATCAAAG+AGG | 0.595325 | 3_4:+71472613 | Msa0519410:CDS |
| GTTTCCAAAGCAAATAATGA+TGG | 0.599744 | 3_4:+71473005 | Msa0519410:CDS |
| ACCAGAAGTTACTAATTCGG+TGG | 0.600989 | 3_4:+71472467 | Msa0519410:CDS |
| AATCCCTGAATAGACCTACA+TGG | 0.602735 | 3_4:+71473924 | Msa0519410:CDS |
| ATCTCCCAACAAGATAGTAG+TGG | 0.611048 | 3_4:-71472844 | None:intergenic |
| AAAGAGATTGATAGAATCCG+AGG | 0.615038 | 3_4:+71472185 | Msa0519410:CDS |
| CCCAACAAGATAGTAGTGGA+TGG | 0.616444 | 3_4:-71472840 | None:intergenic |
| AGAGGGAAGGTACAAGGGAA+AGG | 0.618121 | 3_4:+71472631 | Msa0519410:CDS |
| TTCTGAAGCAACTTCTGACG+AGG | 0.620210 | 3_4:+71472350 | Msa0519410:CDS |
| AAAGAAGAGAAAGTTGAATG+TGG | 0.626130 | 3_4:+71473463 | Msa0519410:CDS |
| CCAGAAGTTACTAATTCGGT+GGG | 0.626761 | 3_4:+71472468 | Msa0519410:CDS |
| CTGTTGAAGAATTTGAGTAG+TGG | 0.635697 | 3_4:+71473410 | Msa0519410:CDS |
| GAGAGTTGCATTGAAGAAGG+AGG | 0.635933 | 3_4:+71472093 | Msa0519410:CDS |
| GGGTAGTGGTAAAAGAGGAA+AGG | 0.636646 | 3_4:+71472488 | Msa0519410:CDS |
| AGAGTTGCATTGAAGAAGGA+GGG | 0.637310 | 3_4:+71472094 | Msa0519410:CDS |
| ATCAAAGAGGGAAGGTACAA+GGG | 0.637578 | 3_4:+71472626 | Msa0519410:CDS |
| CAAACGAGGTGGAATGCAGA+AGG | 0.643587 | 3_4:-71473080 | None:intergenic |
| CTATCTTGTTGGGAGATGGA+AGG | 0.647776 | 3_4:+71472850 | Msa0519410:CDS |
| GGGAAGGTATCAAAGAGGGA+AGG | 0.651040 | 3_4:+71472618 | Msa0519410:CDS |
| GGTCTCGATCAAGTTCCAGA+TGG | 0.651224 | 3_4:+71473107 | Msa0519410:CDS |
| AGAGTTCGCATGATCAAAAG+GGG | 0.652963 | 3_4:+71472901 | Msa0519410:CDS |
| TCTATGTTGAAATCAGGAGG+TGG | 0.653673 | 3_4:-71472009 | None:intergenic |
| GGTTCTATGTTGAAATCAGG+AGG | 0.654128 | 3_4:-71472012 | None:intergenic |
| GGTTTACGGTAAGAGAGGGA+AGG | 0.658054 | 3_4:+71472602 | Msa0519410:CDS |
| AAGATTTGGATCTAGTCACA+TGG | 0.660288 | 3_4:+71473271 | Msa0519410:CDS |
| AAGGAACAATATCGAAGACA+AGG | 0.663403 | 3_4:+71473704 | Msa0519410:CDS |
| TACAATGGAGAAGAATTCAG+AGG | 0.668290 | 3_4:+71472524 | Msa0519410:CDS |
| CCGAGGATGCTATAGACACG+TGG | 0.685477 | 3_4:+71473804 | Msa0519410:CDS |
| CGAGACCTAAACAAACGAGG+TGG | 0.704849 | 3_4:-71473091 | None:intergenic |
| CGTGTCTATAGCATCCTCGG+AGG | 0.738184 | 3_4:-71473801 | None:intergenic |
| TCAAAAGGGGAATCATTGTG+TGG | 0.749018 | 3_4:+71472914 | Msa0519410:CDS |
| GATCGAGACCTAAACAAACG+AGG | 0.763651 | 3_4:-71473094 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATTAAAGATGAGTATAA+TGG | + | chr3_4:71472566-71472585 | Msa0519410:CDS | 20.0% |
| !!! | GTTGATAAAGAATAAAGTTT+TGG | + | chr3_4:71472671-71472690 | Msa0519410:CDS | 20.0% |
| !!! | ATTTTATTTGCAACCTTAAT+TGG | - | chr3_4:71473380-71473399 | None:intergenic | 20.0% |
| !! | AGGTTGCAAATAAAATAAAT+TGG | + | chr3_4:71473384-71473403 | Msa0519410:CDS | 20.0% |
| !!! | TAATGTGATTTTAGAGAAAA+TGG | + | chr3_4:71473610-71473629 | Msa0519410:CDS | 20.0% |
| !!! | AATGTGATTTTAGAGAAAAT+GGG | + | chr3_4:71473611-71473630 | Msa0519410:CDS | 20.0% |
| !! | TATAAGAATTTATGGTCAAA+AGG | + | chr3_4:71473655-71473674 | Msa0519410:CDS | 20.0% |
| !! | AGTATTAAAGATGAGTATAA+TGG | + | chr3_4:71472566-71472585 | Msa0519410:CDS | 20.0% |
| !!! | GTTGATAAAGAATAAAGTTT+TGG | + | chr3_4:71472671-71472690 | Msa0519410:CDS | 20.0% |
| !!! | ATTTTATTTGCAACCTTAAT+TGG | - | chr3_4:71473380-71473399 | None:intergenic | 20.0% |
| !! | AGGTTGCAAATAAAATAAAT+TGG | + | chr3_4:71473384-71473403 | Msa0519410:CDS | 20.0% |
| !!! | TAATGTGATTTTAGAGAAAA+TGG | + | chr3_4:71473610-71473629 | Msa0519410:CDS | 20.0% |
| !!! | AATGTGATTTTAGAGAAAAT+GGG | + | chr3_4:71473611-71473630 | Msa0519410:CDS | 20.0% |
| !! | TATAAGAATTTATGGTCAAA+AGG | + | chr3_4:71473655-71473674 | Msa0519410:CDS | 20.0% |
| !! | TCTAAGAGAAATGTAGTTTT+TGG | - | chr3_4:71472064-71472083 | None:intergenic | 25.0% |
| ! | CAGTTCGATTAAAAAATCTA+CGG | + | chr3_4:71472392-71472411 | Msa0519410:CDS | 25.0% |
| ! | TAAAAAATCTACGGTTACTA+CGG | + | chr3_4:71472401-71472420 | Msa0519410:CDS | 25.0% |
| !!! | GGTTTTAAAAATGAGTACAA+TGG | + | chr3_4:71472509-71472528 | Msa0519410:CDS | 25.0% |
| !!! | AAGAATAAAGTTTTGGTTTC+TGG | + | chr3_4:71472678-71472697 | Msa0519410:CDS | 25.0% |
| !!! | AGAATAAAGTTTTGGTTTCT+GGG | + | chr3_4:71472679-71472698 | Msa0519410:CDS | 25.0% |
| ! | AAATCACATTATAGAAACCA+TGG | - | chr3_4:71473601-71473620 | None:intergenic | 25.0% |
| ! | GTTGCAACTATAAGAATTTA+TGG | + | chr3_4:71473647-71473666 | Msa0519410:CDS | 25.0% |
| !! | TCTAAGAGAAATGTAGTTTT+TGG | - | chr3_4:71472064-71472083 | None:intergenic | 25.0% |
| ! | CAGTTCGATTAAAAAATCTA+CGG | + | chr3_4:71472392-71472411 | Msa0519410:CDS | 25.0% |
| ! | TAAAAAATCTACGGTTACTA+CGG | + | chr3_4:71472401-71472420 | Msa0519410:CDS | 25.0% |
| !!! | GGTTTTAAAAATGAGTACAA+TGG | + | chr3_4:71472509-71472528 | Msa0519410:CDS | 25.0% |
| !!! | AAGAATAAAGTTTTGGTTTC+TGG | + | chr3_4:71472678-71472697 | Msa0519410:CDS | 25.0% |
| !!! | AGAATAAAGTTTTGGTTTCT+GGG | + | chr3_4:71472679-71472698 | Msa0519410:CDS | 25.0% |
| ! | AAATCACATTATAGAAACCA+TGG | - | chr3_4:71473601-71473620 | None:intergenic | 25.0% |
| ! | GTTGCAACTATAAGAATTTA+TGG | + | chr3_4:71473647-71473666 | Msa0519410:CDS | 25.0% |
| !!! | ATGTAGTTTTTGGCATTGTT+AGG | - | chr3_4:71472054-71472073 | None:intergenic | 30.0% |
| ! | ATCATCAGAAGTTGATTCAT+CGG | - | chr3_4:71472307-71472326 | None:intergenic | 30.0% |
| TGAACCAGAAGTTACTAATT+CGG | + | chr3_4:71472464-71472483 | Msa0519410:CDS | 30.0% | |
| ! | TATAATGGAGAAGAATTCAG+AGG | + | chr3_4:71472581-71472600 | Msa0519410:CDS | 30.0% |
| !! | AAAGGTATTCACTTGTTTCT+TGG | + | chr3_4:71472649-71472668 | Msa0519410:CDS | 30.0% |
| AGTAACAATGTTGTCAAAAG+AGG | + | chr3_4:71472723-71472742 | Msa0519410:CDS | 30.0% | |
| GTAACAATGTTGTCAAAAGA+GGG | + | chr3_4:71472724-71472743 | Msa0519410:CDS | 30.0% | |
| !!! | AGAGGGAGTTTATTTTATGA+TGG | + | chr3_4:71472741-71472760 | Msa0519410:CDS | 30.0% |
| GTTTCCAAAGCAAATAATGA+TGG | + | chr3_4:71473005-71473024 | Msa0519410:CDS | 30.0% | |
| AACACCATCATTATTTGCTT+TGG | - | chr3_4:71473012-71473031 | None:intergenic | 30.0% | |
| TGTTTGTTCTATTTGTGGTT+TGG | + | chr3_4:71473028-71473047 | Msa0519410:CDS | 30.0% | |
| GTTTGTTCTATTTGTGGTTT+GGG | + | chr3_4:71473029-71473048 | Msa0519410:CDS | 30.0% | |
| ! | CATATTTTGCAACAACAAGT+TGG | - | chr3_4:71473146-71473165 | None:intergenic | 30.0% |
| !!! | CACATTGTTGTTTGCATTTT+GGG | - | chr3_4:71473175-71473194 | None:intergenic | 30.0% |
| ! | TGTGAGCAAAATTTTCACTT+TGG | + | chr3_4:71473233-71473252 | Msa0519410:CDS | 30.0% |
| ! | TTTTCACTTTGGATGTGTAA+AGG | + | chr3_4:71473244-71473263 | Msa0519410:CDS | 30.0% |
| AAAGAAGAGAAAGTTGAATG+TGG | + | chr3_4:71473463-71473482 | Msa0519410:CDS | 30.0% | |
| ! | CAGATAAAGCATCAATAGTT+GGG | - | chr3_4:71473517-71473536 | None:intergenic | 30.0% |
| !!! | AAAGATGTCGTTTTTAGTAG+AGG | + | chr3_4:71473551-71473570 | Msa0519410:CDS | 30.0% |
| GAAAATGGGTAAAGTCATTT+CGG | + | chr3_4:71473625-71473644 | Msa0519410:CDS | 30.0% | |
| !!! | ATGTAGTTTTTGGCATTGTT+AGG | - | chr3_4:71472054-71472073 | None:intergenic | 30.0% |
| ! | ATCATCAGAAGTTGATTCAT+CGG | - | chr3_4:71472307-71472326 | None:intergenic | 30.0% |
| TGAACCAGAAGTTACTAATT+CGG | + | chr3_4:71472464-71472483 | Msa0519410:CDS | 30.0% | |
| ! | TATAATGGAGAAGAATTCAG+AGG | + | chr3_4:71472581-71472600 | Msa0519410:CDS | 30.0% |
| !! | AAAGGTATTCACTTGTTTCT+TGG | + | chr3_4:71472649-71472668 | Msa0519410:CDS | 30.0% |
| AGTAACAATGTTGTCAAAAG+AGG | + | chr3_4:71472723-71472742 | Msa0519410:CDS | 30.0% | |
| GTAACAATGTTGTCAAAAGA+GGG | + | chr3_4:71472724-71472743 | Msa0519410:CDS | 30.0% | |
| !!! | AGAGGGAGTTTATTTTATGA+TGG | + | chr3_4:71472741-71472760 | Msa0519410:CDS | 30.0% |
| GTTTCCAAAGCAAATAATGA+TGG | + | chr3_4:71473005-71473024 | Msa0519410:CDS | 30.0% | |
| AACACCATCATTATTTGCTT+TGG | - | chr3_4:71473012-71473031 | None:intergenic | 30.0% | |
| TGTTTGTTCTATTTGTGGTT+TGG | + | chr3_4:71473028-71473047 | Msa0519410:CDS | 30.0% | |
| GTTTGTTCTATTTGTGGTTT+GGG | + | chr3_4:71473029-71473048 | Msa0519410:CDS | 30.0% | |
| ! | CATATTTTGCAACAACAAGT+TGG | - | chr3_4:71473146-71473165 | None:intergenic | 30.0% |
| !!! | CACATTGTTGTTTGCATTTT+GGG | - | chr3_4:71473175-71473194 | None:intergenic | 30.0% |
| ! | TGTGAGCAAAATTTTCACTT+TGG | + | chr3_4:71473233-71473252 | Msa0519410:CDS | 30.0% |
| ! | TTTTCACTTTGGATGTGTAA+AGG | + | chr3_4:71473244-71473263 | Msa0519410:CDS | 30.0% |
| AAAGAAGAGAAAGTTGAATG+TGG | + | chr3_4:71473463-71473482 | Msa0519410:CDS | 30.0% | |
| ! | CAGATAAAGCATCAATAGTT+GGG | - | chr3_4:71473517-71473536 | None:intergenic | 30.0% |
| !!! | AAAGATGTCGTTTTTAGTAG+AGG | + | chr3_4:71473551-71473570 | Msa0519410:CDS | 30.0% |
| GAAAATGGGTAAAGTCATTT+CGG | + | chr3_4:71473625-71473644 | Msa0519410:CDS | 30.0% | |
| TCAGGTTCTATGTTGAAATC+AGG | - | chr3_4:71472018-71472037 | None:intergenic | 35.0% | |
| ! | TTTTGGCATTGTTAGGTTCT+GGG | - | chr3_4:71472047-71472066 | None:intergenic | 35.0% |
| !! | TTTTTGGCATTGTTAGGTTC+TGG | - | chr3_4:71472048-71472067 | None:intergenic | 35.0% |
| CAATTTCTTCGTCTCTGTTA+CGG | + | chr3_4:71472157-71472176 | Msa0519410:CDS | 35.0% | |
| AAAGAGATTGATAGAATCCG+AGG | + | chr3_4:71472185-71472204 | Msa0519410:CDS | 35.0% | |
| TACAATGGAGAAGAATTCAG+AGG | + | chr3_4:71472524-71472543 | Msa0519410:CDS | 35.0% | |
| GAGAAGAATTCAGAGGTTTA+CGG | + | chr3_4:71472588-71472607 | Msa0519410:CDS | 35.0% | |
| CGTGTTAATTTCACTATCAC+TGG | + | chr3_4:71472783-71472802 | Msa0519410:CDS | 35.0% | |
| TTTCACTATCACTGGATTTG+AGG | + | chr3_4:71472791-71472810 | Msa0519410:CDS | 35.0% | |
| GATGGTGTTTGTTCTATTTG+TGG | + | chr3_4:71473023-71473042 | Msa0519410:CDS | 35.0% | |
| !!! | GCACATTGTTGTTTGCATTT+TGG | - | chr3_4:71473176-71473195 | None:intergenic | 35.0% |
| TGTGTAAAGGCTACAAGATT+TGG | + | chr3_4:71473257-71473276 | Msa0519410:CDS | 35.0% | |
| AAGATTTGGATCTAGTCACA+TGG | + | chr3_4:71473271-71473290 | Msa0519410:CDS | 35.0% | |
| TGGAGAGCAATGTTAAAAAC+AGG | + | chr3_4:71473291-71473310 | Msa0519410:CDS | 35.0% | |
| GCAATGTTAAAAACAGGAAC+TGG | + | chr3_4:71473297-71473316 | Msa0519410:CDS | 35.0% | |
| TTCTGTCTGAAGAAGCTATT+AGG | + | chr3_4:71473350-71473369 | Msa0519410:CDS | 35.0% | |
| TCTGTCTGAAGAAGCTATTA+GGG | + | chr3_4:71473351-71473370 | Msa0519410:CDS | 35.0% | |
| GCTATTAGGGAAACCAATTA+AGG | + | chr3_4:71473364-71473383 | Msa0519410:CDS | 35.0% | |
| CTGTTGAAGAATTTGAGTAG+TGG | + | chr3_4:71473410-71473429 | Msa0519410:CDS | 35.0% | |
| ! | CCAGATAAAGCATCAATAGT+TGG | - | chr3_4:71473518-71473537 | None:intergenic | 35.0% |
| CCAACTATTGATGCTTTATC+TGG | + | chr3_4:71473515-71473534 | Msa0519410:CDS | 35.0% | |
| CATAAACGCTTGAATTTCCA+TGG | + | chr3_4:71473581-71473600 | Msa0519410:CDS | 35.0% | |
| TTGTCTTCGATATTGTTCCT+TGG | - | chr3_4:71473705-71473724 | None:intergenic | 35.0% | |
| AAGGAACAATATCGAAGACA+AGG | + | chr3_4:71473704-71473723 | Msa0519410:CDS | 35.0% | |
| !!! | CAAAAGTGTTTGGTTTTGCT+AGG | + | chr3_4:71473828-71473847 | Msa0519410:CDS | 35.0% |
| !!! | TTTGGTTTTGCTAGGATAAC+CGG | + | chr3_4:71473836-71473855 | Msa0519410:CDS | 35.0% |
| AAATTGACACTTGTCTTCTC+CGG | - | chr3_4:71473858-71473877 | None:intergenic | 35.0% | |
| TAGGTCTATTCAGGGATTTA+AGG | - | chr3_4:71473922-71473941 | None:intergenic | 35.0% | |
| TCAGGTTCTATGTTGAAATC+AGG | - | chr3_4:71472018-71472037 | None:intergenic | 35.0% | |
| ! | TTTTGGCATTGTTAGGTTCT+GGG | - | chr3_4:71472047-71472066 | None:intergenic | 35.0% |
| !! | TTTTTGGCATTGTTAGGTTC+TGG | - | chr3_4:71472048-71472067 | None:intergenic | 35.0% |
| CAATTTCTTCGTCTCTGTTA+CGG | + | chr3_4:71472157-71472176 | Msa0519410:CDS | 35.0% | |
| AAAGAGATTGATAGAATCCG+AGG | + | chr3_4:71472185-71472204 | Msa0519410:CDS | 35.0% | |
| TACAATGGAGAAGAATTCAG+AGG | + | chr3_4:71472524-71472543 | Msa0519410:CDS | 35.0% | |
| GAGAAGAATTCAGAGGTTTA+CGG | + | chr3_4:71472588-71472607 | Msa0519410:CDS | 35.0% | |
| CGTGTTAATTTCACTATCAC+TGG | + | chr3_4:71472783-71472802 | Msa0519410:CDS | 35.0% | |
| TTTCACTATCACTGGATTTG+AGG | + | chr3_4:71472791-71472810 | Msa0519410:CDS | 35.0% | |
| GATGGTGTTTGTTCTATTTG+TGG | + | chr3_4:71473023-71473042 | Msa0519410:CDS | 35.0% | |
| !!! | GCACATTGTTGTTTGCATTT+TGG | - | chr3_4:71473176-71473195 | None:intergenic | 35.0% |
| TGTGTAAAGGCTACAAGATT+TGG | + | chr3_4:71473257-71473276 | Msa0519410:CDS | 35.0% | |
| AAGATTTGGATCTAGTCACA+TGG | + | chr3_4:71473271-71473290 | Msa0519410:CDS | 35.0% | |
| TGGAGAGCAATGTTAAAAAC+AGG | + | chr3_4:71473291-71473310 | Msa0519410:CDS | 35.0% | |
| GCAATGTTAAAAACAGGAAC+TGG | + | chr3_4:71473297-71473316 | Msa0519410:CDS | 35.0% | |
| TTCTGTCTGAAGAAGCTATT+AGG | + | chr3_4:71473350-71473369 | Msa0519410:CDS | 35.0% | |
| TCTGTCTGAAGAAGCTATTA+GGG | + | chr3_4:71473351-71473370 | Msa0519410:CDS | 35.0% | |
| GCTATTAGGGAAACCAATTA+AGG | + | chr3_4:71473364-71473383 | Msa0519410:CDS | 35.0% | |
| CTGTTGAAGAATTTGAGTAG+TGG | + | chr3_4:71473410-71473429 | Msa0519410:CDS | 35.0% | |
| ! | CCAGATAAAGCATCAATAGT+TGG | - | chr3_4:71473518-71473537 | None:intergenic | 35.0% |
| CCAACTATTGATGCTTTATC+TGG | + | chr3_4:71473515-71473534 | Msa0519410:CDS | 35.0% | |
| CATAAACGCTTGAATTTCCA+TGG | + | chr3_4:71473581-71473600 | Msa0519410:CDS | 35.0% | |
| TTGTCTTCGATATTGTTCCT+TGG | - | chr3_4:71473705-71473724 | None:intergenic | 35.0% | |
| AAGGAACAATATCGAAGACA+AGG | + | chr3_4:71473704-71473723 | Msa0519410:CDS | 35.0% | |
| !!! | CAAAAGTGTTTGGTTTTGCT+AGG | + | chr3_4:71473828-71473847 | Msa0519410:CDS | 35.0% |
| !!! | TTTGGTTTTGCTAGGATAAC+CGG | + | chr3_4:71473836-71473855 | Msa0519410:CDS | 35.0% |
| AAATTGACACTTGTCTTCTC+CGG | - | chr3_4:71473858-71473877 | None:intergenic | 35.0% | |
| TAGGTCTATTCAGGGATTTA+AGG | - | chr3_4:71473922-71473941 | None:intergenic | 35.0% | |
| TCTATGTTGAAATCAGGAGG+TGG | - | chr3_4:71472012-71472031 | None:intergenic | 40.0% | |
| GGTTCTATGTTGAAATCAGG+AGG | - | chr3_4:71472015-71472034 | None:intergenic | 40.0% | |
| AGAGTTGCATTGAAGAAGGA+GGG | + | chr3_4:71472094-71472113 | Msa0519410:CDS | 40.0% | |
| ! | TACTACGGTGTCAACATCAA+TGG | + | chr3_4:71472416-71472435 | Msa0519410:CDS | 40.0% |
| ACCAGAAGTTACTAATTCGG+TGG | + | chr3_4:71472467-71472486 | Msa0519410:CDS | 40.0% | |
| CCAGAAGTTACTAATTCGGT+GGG | + | chr3_4:71472468-71472487 | Msa0519410:CDS | 40.0% | |
| GAGAAGAATTCAGAGGATTG+TGG | + | chr3_4:71472531-71472550 | Msa0519410:CDS | 40.0% | |
| ! | TATCAAAGAGGGAAGGTACA+AGG | + | chr3_4:71472625-71472644 | Msa0519410:CDS | 40.0% |
| ! | ATCAAAGAGGGAAGGTACAA+GGG | + | chr3_4:71472626-71472645 | Msa0519410:CDS | 40.0% |
| ACCATCCACTACTATCTTGT+TGG | + | chr3_4:71472839-71472858 | Msa0519410:CDS | 40.0% | |
| CCATCCACTACTATCTTGTT+GGG | + | chr3_4:71472840-71472859 | Msa0519410:CDS | 40.0% | |
| ATCTCCCAACAAGATAGTAG+TGG | - | chr3_4:71472847-71472866 | None:intergenic | 40.0% | |
| ACTACTATCTTGTTGGGAGA+TGG | + | chr3_4:71472846-71472865 | Msa0519410:CDS | 40.0% | |
| TCAGAGTTCGCATGATCAAA+AGG | + | chr3_4:71472899-71472918 | Msa0519410:CDS | 40.0% | |
| CAGAGTTCGCATGATCAAAA+GGG | + | chr3_4:71472900-71472919 | Msa0519410:CDS | 40.0% | |
| AGAGTTCGCATGATCAAAAG+GGG | + | chr3_4:71472901-71472920 | Msa0519410:CDS | 40.0% | |
| TCAAAAGGGGAATCATTGTG+TGG | + | chr3_4:71472914-71472933 | Msa0519410:CDS | 40.0% | |
| ! | TGTTCTATTTGTGGTTTGGG+AGG | + | chr3_4:71473032-71473051 | Msa0519410:CDS | 40.0% |
| ATCAAGTTCCAGATGGTGAT+TGG | + | chr3_4:71473114-71473133 | Msa0519410:CDS | 40.0% | |
| !! | TGGTTTTGCAGTGTAGTTTG+CGG | + | chr3_4:71473317-71473336 | Msa0519410:CDS | 40.0% |
| AATCCCTGAATAGACCTACA+TGG | + | chr3_4:71473924-71473943 | Msa0519410:CDS | 40.0% | |
| TCTATGTTGAAATCAGGAGG+TGG | - | chr3_4:71472012-71472031 | None:intergenic | 40.0% | |
| GGTTCTATGTTGAAATCAGG+AGG | - | chr3_4:71472015-71472034 | None:intergenic | 40.0% | |
| AGAGTTGCATTGAAGAAGGA+GGG | + | chr3_4:71472094-71472113 | Msa0519410:CDS | 40.0% | |
| ! | TACTACGGTGTCAACATCAA+TGG | + | chr3_4:71472416-71472435 | Msa0519410:CDS | 40.0% |
| ACCAGAAGTTACTAATTCGG+TGG | + | chr3_4:71472467-71472486 | Msa0519410:CDS | 40.0% | |
| CCAGAAGTTACTAATTCGGT+GGG | + | chr3_4:71472468-71472487 | Msa0519410:CDS | 40.0% | |
| GAGAAGAATTCAGAGGATTG+TGG | + | chr3_4:71472531-71472550 | Msa0519410:CDS | 40.0% | |
| ! | TATCAAAGAGGGAAGGTACA+AGG | + | chr3_4:71472625-71472644 | Msa0519410:CDS | 40.0% |
| ! | ATCAAAGAGGGAAGGTACAA+GGG | + | chr3_4:71472626-71472645 | Msa0519410:CDS | 40.0% |
| ACCATCCACTACTATCTTGT+TGG | + | chr3_4:71472839-71472858 | Msa0519410:CDS | 40.0% | |
| CCATCCACTACTATCTTGTT+GGG | + | chr3_4:71472840-71472859 | Msa0519410:CDS | 40.0% | |
| ATCTCCCAACAAGATAGTAG+TGG | - | chr3_4:71472847-71472866 | None:intergenic | 40.0% | |
| ACTACTATCTTGTTGGGAGA+TGG | + | chr3_4:71472846-71472865 | Msa0519410:CDS | 40.0% | |
| TCAGAGTTCGCATGATCAAA+AGG | + | chr3_4:71472899-71472918 | Msa0519410:CDS | 40.0% | |
| CAGAGTTCGCATGATCAAAA+GGG | + | chr3_4:71472900-71472919 | Msa0519410:CDS | 40.0% | |
| AGAGTTCGCATGATCAAAAG+GGG | + | chr3_4:71472901-71472920 | Msa0519410:CDS | 40.0% | |
| TCAAAAGGGGAATCATTGTG+TGG | + | chr3_4:71472914-71472933 | Msa0519410:CDS | 40.0% | |
| ! | TGTTCTATTTGTGGTTTGGG+AGG | + | chr3_4:71473032-71473051 | Msa0519410:CDS | 40.0% |
| ATCAAGTTCCAGATGGTGAT+TGG | + | chr3_4:71473114-71473133 | Msa0519410:CDS | 40.0% | |
| !! | TGGTTTTGCAGTGTAGTTTG+CGG | + | chr3_4:71473317-71473336 | Msa0519410:CDS | 40.0% |
| AATCCCTGAATAGACCTACA+TGG | + | chr3_4:71473924-71473943 | Msa0519410:CDS | 40.0% | |
| TCTTCAATGCAACTCTCGCA+GGG | - | chr3_4:71472090-71472109 | None:intergenic | 45.0% | |
| TTCTTCAATGCAACTCTCGC+AGG | - | chr3_4:71472091-71472110 | None:intergenic | 45.0% | |
| TGCGAGAGTTGCATTGAAGA+AGG | + | chr3_4:71472090-71472109 | Msa0519410:CDS | 45.0% | |
| GAGAGTTGCATTGAAGAAGG+AGG | + | chr3_4:71472093-71472112 | Msa0519410:CDS | 45.0% | |
| ! | GACGAAGAAATTGCTGTTGC+TGG | - | chr3_4:71472150-71472169 | None:intergenic | 45.0% |
| !! | TGTTGCTTCTGCTGTTTCCT+CGG | - | chr3_4:71472205-71472224 | None:intergenic | 45.0% |
| !! | TTCTGAAGCAACTTCTGACG+AGG | + | chr3_4:71472350-71472369 | Msa0519410:CDS | 45.0% |
| CCCACCGAATTAGTAACTTC+TGG | - | chr3_4:71472471-71472490 | None:intergenic | 45.0% | |
| ! | GTTACTAATTCGGTGGGTAG+TGG | + | chr3_4:71472474-71472493 | Msa0519410:CDS | 45.0% |
| ! | GGGTAGTGGTAAAAGAGGAA+AGG | + | chr3_4:71472488-71472507 | Msa0519410:CDS | 45.0% |
| TCAGAGGATTGTGGTAGAAG+AGG | + | chr3_4:71472540-71472559 | Msa0519410:CDS | 45.0% | |
| CAGAGGATTGTGGTAGAAGA+GGG | + | chr3_4:71472541-71472560 | Msa0519410:CDS | 45.0% | |
| TCAGAGGTTTACGGTAAGAG+AGG | + | chr3_4:71472597-71472616 | Msa0519410:CDS | 45.0% | |
| CAGAGGTTTACGGTAAGAGA+GGG | + | chr3_4:71472598-71472617 | Msa0519410:CDS | 45.0% | |
| !! | AGAGAGGGAAGGTATCAAAG+AGG | + | chr3_4:71472613-71472632 | Msa0519410:CDS | 45.0% |
| !! | GAGAGGGAAGGTATCAAAGA+GGG | + | chr3_4:71472614-71472633 | Msa0519410:CDS | 45.0% |
| !! | GGGACTACTGTGTTTTGTTG+TGG | + | chr3_4:71472699-71472718 | Msa0519410:CDS | 45.0% |
| ! | CCCAACAAGATAGTAGTGGA+TGG | - | chr3_4:71472843-71472862 | None:intergenic | 45.0% |
| CTATCTTGTTGGGAGATGGA+AGG | + | chr3_4:71472850-71472869 | Msa0519410:CDS | 45.0% | |
| GTCGTTGTTGGACTGTCAAA+GGG | + | chr3_4:71472872-71472891 | Msa0519410:CDS | 45.0% | |
| !! | TCCGAAGCAAGTTCTGAAGT+AGG | + | chr3_4:71472972-71472991 | Msa0519410:CDS | 45.0% |
| ! | CCCTACTTCAGAACTTGCTT+CGG | - | chr3_4:71472976-71472995 | None:intergenic | 45.0% |
| !! | CCGAAGCAAGTTCTGAAGTA+GGG | + | chr3_4:71472973-71472992 | Msa0519410:CDS | 45.0% |
| GCATTCCACCTCGTTTGTTT+AGG | + | chr3_4:71473086-71473105 | Msa0519410:CDS | 45.0% | |
| GATCGAGACCTAAACAAACG+AGG | - | chr3_4:71473097-71473116 | None:intergenic | 45.0% | |
| GGACAAAACCAATCACCATC+TGG | - | chr3_4:71473125-71473144 | None:intergenic | 45.0% | |
| !! | GGTTTTGCAGTGTAGTTTGC+GGG | + | chr3_4:71473318-71473337 | Msa0519410:CDS | 45.0% |
| GGTAGCCACGAAAACTATCT+CGG | - | chr3_4:71473684-71473703 | None:intergenic | 45.0% | |
| ! | GATAGTTTTCGTGGCTACCA+AGG | + | chr3_4:71473685-71473704 | Msa0519410:CDS | 45.0% |
| GAGAAACAGTTGACACGCTT+AGG | + | chr3_4:71473755-71473774 | Msa0519410:CDS | 45.0% | |
| ACGCTTAGGAGTTGAAAGCT+TGG | + | chr3_4:71473769-71473788 | Msa0519410:CDS | 45.0% | |
| !! | GACACGTGGACAAAAGTGTT+TGG | + | chr3_4:71473818-71473837 | Msa0519410:CDS | 45.0% |
| AGGCCATGTAGGTCTATTCA+GGG | - | chr3_4:71473930-71473949 | None:intergenic | 45.0% | |
| AAGGCCATGTAGGTCTATTC+AGG | - | chr3_4:71473931-71473950 | None:intergenic | 45.0% | |
| CAAGCAATACAAGGCCATGT+AGG | - | chr3_4:71473941-71473960 | None:intergenic | 45.0% | |
| TCTTCAATGCAACTCTCGCA+GGG | - | chr3_4:71472090-71472109 | None:intergenic | 45.0% | |
| TTCTTCAATGCAACTCTCGC+AGG | - | chr3_4:71472091-71472110 | None:intergenic | 45.0% | |
| TGCGAGAGTTGCATTGAAGA+AGG | + | chr3_4:71472090-71472109 | Msa0519410:CDS | 45.0% | |
| GAGAGTTGCATTGAAGAAGG+AGG | + | chr3_4:71472093-71472112 | Msa0519410:CDS | 45.0% | |
| ! | GACGAAGAAATTGCTGTTGC+TGG | - | chr3_4:71472150-71472169 | None:intergenic | 45.0% |
| !! | TGTTGCTTCTGCTGTTTCCT+CGG | - | chr3_4:71472205-71472224 | None:intergenic | 45.0% |
| !! | TTCTGAAGCAACTTCTGACG+AGG | + | chr3_4:71472350-71472369 | Msa0519410:CDS | 45.0% |
| CCCACCGAATTAGTAACTTC+TGG | - | chr3_4:71472471-71472490 | None:intergenic | 45.0% | |
| ! | GTTACTAATTCGGTGGGTAG+TGG | + | chr3_4:71472474-71472493 | Msa0519410:CDS | 45.0% |
| ! | GGGTAGTGGTAAAAGAGGAA+AGG | + | chr3_4:71472488-71472507 | Msa0519410:CDS | 45.0% |
| TCAGAGGATTGTGGTAGAAG+AGG | + | chr3_4:71472540-71472559 | Msa0519410:CDS | 45.0% | |
| CAGAGGATTGTGGTAGAAGA+GGG | + | chr3_4:71472541-71472560 | Msa0519410:CDS | 45.0% | |
| TCAGAGGTTTACGGTAAGAG+AGG | + | chr3_4:71472597-71472616 | Msa0519410:CDS | 45.0% | |
| CAGAGGTTTACGGTAAGAGA+GGG | + | chr3_4:71472598-71472617 | Msa0519410:CDS | 45.0% | |
| !! | AGAGAGGGAAGGTATCAAAG+AGG | + | chr3_4:71472613-71472632 | Msa0519410:CDS | 45.0% |
| !! | GAGAGGGAAGGTATCAAAGA+GGG | + | chr3_4:71472614-71472633 | Msa0519410:CDS | 45.0% |
| !! | GGGACTACTGTGTTTTGTTG+TGG | + | chr3_4:71472699-71472718 | Msa0519410:CDS | 45.0% |
| ! | CCCAACAAGATAGTAGTGGA+TGG | - | chr3_4:71472843-71472862 | None:intergenic | 45.0% |
| CTATCTTGTTGGGAGATGGA+AGG | + | chr3_4:71472850-71472869 | Msa0519410:CDS | 45.0% | |
| GTCGTTGTTGGACTGTCAAA+GGG | + | chr3_4:71472872-71472891 | Msa0519410:CDS | 45.0% | |
| !! | TCCGAAGCAAGTTCTGAAGT+AGG | + | chr3_4:71472972-71472991 | Msa0519410:CDS | 45.0% |
| ! | CCCTACTTCAGAACTTGCTT+CGG | - | chr3_4:71472976-71472995 | None:intergenic | 45.0% |
| !! | CCGAAGCAAGTTCTGAAGTA+GGG | + | chr3_4:71472973-71472992 | Msa0519410:CDS | 45.0% |
| GCATTCCACCTCGTTTGTTT+AGG | + | chr3_4:71473086-71473105 | Msa0519410:CDS | 45.0% | |
| GATCGAGACCTAAACAAACG+AGG | - | chr3_4:71473097-71473116 | None:intergenic | 45.0% | |
| GGACAAAACCAATCACCATC+TGG | - | chr3_4:71473125-71473144 | None:intergenic | 45.0% | |
| !! | GGTTTTGCAGTGTAGTTTGC+GGG | + | chr3_4:71473318-71473337 | Msa0519410:CDS | 45.0% |
| GGTAGCCACGAAAACTATCT+CGG | - | chr3_4:71473684-71473703 | None:intergenic | 45.0% | |
| ! | GATAGTTTTCGTGGCTACCA+AGG | + | chr3_4:71473685-71473704 | Msa0519410:CDS | 45.0% |
| GAGAAACAGTTGACACGCTT+AGG | + | chr3_4:71473755-71473774 | Msa0519410:CDS | 45.0% | |
| ACGCTTAGGAGTTGAAAGCT+TGG | + | chr3_4:71473769-71473788 | Msa0519410:CDS | 45.0% | |
| !! | GACACGTGGACAAAAGTGTT+TGG | + | chr3_4:71473818-71473837 | Msa0519410:CDS | 45.0% |
| AGGCCATGTAGGTCTATTCA+GGG | - | chr3_4:71473930-71473949 | None:intergenic | 45.0% | |
| AAGGCCATGTAGGTCTATTC+AGG | - | chr3_4:71473931-71473950 | None:intergenic | 45.0% | |
| CAAGCAATACAAGGCCATGT+AGG | - | chr3_4:71473941-71473960 | None:intergenic | 45.0% | |
| !! | TGCAGTCGAAGGGTGTTTGA+GGG | - | chr3_4:71472124-71472143 | None:intergenic | 50.0% |
| AAAGCGACCAAGAGAATCCG+AGG | + | chr3_4:71472251-71472270 | Msa0519410:CDS | 50.0% | |
| ! | TGCTATTGCTGCTGCTTCCT+CGG | - | chr3_4:71472271-71472290 | None:intergenic | 50.0% |
| ! | TCGGTGGGTAGTGGTAAAAG+AGG | + | chr3_4:71472483-71472502 | Msa0519410:CDS | 50.0% |
| GGTTTACGGTAAGAGAGGGA+AGG | + | chr3_4:71472602-71472621 | Msa0519410:CDS | 50.0% | |
| !! | GGGAAGGTATCAAAGAGGGA+AGG | + | chr3_4:71472618-71472637 | Msa0519410:CDS | 50.0% |
| ! | AGAGGGAAGGTACAAGGGAA+AGG | + | chr3_4:71472631-71472650 | Msa0519410:CDS | 50.0% |
| ! | ACTGGATTTGAGGCTCATGC+TGG | + | chr3_4:71472801-71472820 | Msa0519410:CDS | 50.0% |
| ! | AGGCTCATGCTGGTTGTACA+AGG | + | chr3_4:71472811-71472830 | Msa0519410:CDS | 50.0% |
| GGTCGTTGTTGGACTGTCAA+AGG | + | chr3_4:71472871-71472890 | Msa0519410:CDS | 50.0% | |
| CAAACGAGGTGGAATGCAGA+AGG | - | chr3_4:71473083-71473102 | None:intergenic | 50.0% | |
| CGAGACCTAAACAAACGAGG+TGG | - | chr3_4:71473094-71473113 | None:intergenic | 50.0% | |
| GGTCTCGATCAAGTTCCAGA+TGG | + | chr3_4:71473107-71473126 | Msa0519410:CDS | 50.0% | |
| ! | GGTTGCCGAGATAGTTTTCG+TGG | + | chr3_4:71473676-71473695 | Msa0519410:CDS | 50.0% |
| !!! | CTTGGTTTTGCATTCCTCCG+AGG | + | chr3_4:71473787-71473806 | Msa0519410:CDS | 50.0% |
| CCACGTGTCTATAGCATCCT+CGG | - | chr3_4:71473807-71473826 | None:intergenic | 50.0% | |
| !! | TGCAGTCGAAGGGTGTTTGA+GGG | - | chr3_4:71472124-71472143 | None:intergenic | 50.0% |
| AAAGCGACCAAGAGAATCCG+AGG | + | chr3_4:71472251-71472270 | Msa0519410:CDS | 50.0% | |
| ! | TGCTATTGCTGCTGCTTCCT+CGG | - | chr3_4:71472271-71472290 | None:intergenic | 50.0% |
| ! | TCGGTGGGTAGTGGTAAAAG+AGG | + | chr3_4:71472483-71472502 | Msa0519410:CDS | 50.0% |
| GGTTTACGGTAAGAGAGGGA+AGG | + | chr3_4:71472602-71472621 | Msa0519410:CDS | 50.0% | |
| !! | GGGAAGGTATCAAAGAGGGA+AGG | + | chr3_4:71472618-71472637 | Msa0519410:CDS | 50.0% |
| ! | AGAGGGAAGGTACAAGGGAA+AGG | + | chr3_4:71472631-71472650 | Msa0519410:CDS | 50.0% |
| ! | ACTGGATTTGAGGCTCATGC+TGG | + | chr3_4:71472801-71472820 | Msa0519410:CDS | 50.0% |
| ! | AGGCTCATGCTGGTTGTACA+AGG | + | chr3_4:71472811-71472830 | Msa0519410:CDS | 50.0% |
| GGTCGTTGTTGGACTGTCAA+AGG | + | chr3_4:71472871-71472890 | Msa0519410:CDS | 50.0% | |
| CAAACGAGGTGGAATGCAGA+AGG | - | chr3_4:71473083-71473102 | None:intergenic | 50.0% | |
| CGAGACCTAAACAAACGAGG+TGG | - | chr3_4:71473094-71473113 | None:intergenic | 50.0% | |
| GGTCTCGATCAAGTTCCAGA+TGG | + | chr3_4:71473107-71473126 | Msa0519410:CDS | 50.0% | |
| ! | GGTTGCCGAGATAGTTTTCG+TGG | + | chr3_4:71473676-71473695 | Msa0519410:CDS | 50.0% |
| !!! | CTTGGTTTTGCATTCCTCCG+AGG | + | chr3_4:71473787-71473806 | Msa0519410:CDS | 50.0% |
| CCACGTGTCTATAGCATCCT+CGG | - | chr3_4:71473807-71473826 | None:intergenic | 50.0% | |
| !! | TTAGGTTCTGGGCAGTGCTC+AGG | - | chr3_4:71472036-71472055 | None:intergenic | 55.0% |
| !! | CTGCAGTCGAAGGGTGTTTG+AGG | - | chr3_4:71472125-71472144 | None:intergenic | 55.0% |
| !! | TTGCTGGTGCTGCAGTCGAA+GGG | - | chr3_4:71472134-71472153 | None:intergenic | 55.0% |
| GCTGCTTCCTCGGATTCTCT+TGG | - | chr3_4:71472261-71472280 | None:intergenic | 55.0% | |
| GGGAGATGGAAGGTCGTTGT+TGG | + | chr3_4:71472860-71472879 | Msa0519410:CDS | 55.0% | |
| CGTGTCTATAGCATCCTCGG+AGG | - | chr3_4:71473804-71473823 | None:intergenic | 55.0% | |
| CCGAGGATGCTATAGACACG+TGG | + | chr3_4:71473804-71473823 | Msa0519410:CDS | 55.0% | |
| !! | TTAGGTTCTGGGCAGTGCTC+AGG | - | chr3_4:71472036-71472055 | None:intergenic | 55.0% |
| !! | CTGCAGTCGAAGGGTGTTTG+AGG | - | chr3_4:71472125-71472144 | None:intergenic | 55.0% |
| !! | TTGCTGGTGCTGCAGTCGAA+GGG | - | chr3_4:71472134-71472153 | None:intergenic | 55.0% |
| GCTGCTTCCTCGGATTCTCT+TGG | - | chr3_4:71472261-71472280 | None:intergenic | 55.0% | |
| GGGAGATGGAAGGTCGTTGT+TGG | + | chr3_4:71472860-71472879 | Msa0519410:CDS | 55.0% | |
| CGTGTCTATAGCATCCTCGG+AGG | - | chr3_4:71473804-71473823 | None:intergenic | 55.0% | |
| CCGAGGATGCTATAGACACG+TGG | + | chr3_4:71473804-71473823 | Msa0519410:CDS | 55.0% | |
| !! | GTTGCTGGTGCTGCAGTCGA+AGG | - | chr3_4:71472135-71472154 | None:intergenic | 60.0% |
| !! | GTTGCTGGTGCTGCAGTCGA+AGG | - | chr3_4:71472135-71472154 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 71471994 | 71473961 | 71471994 | ID=Msa0519410;Name=Msa0519410 |
| chr3_4 | mRNA | 71471994 | 71473961 | 71471994 | ID=Msa0519410-mRNA-1;Parent=Msa0519410;Name=Msa0519410-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|-1|0|1|-1|1|1|0|655 |
| chr3_4 | exon | 71471994 | 71473961 | 71471994 | ID=Msa0519410-mRNA-1:exon:19644;Parent=Msa0519410-mRNA-1 |
| chr3_4 | CDS | 71471994 | 71473961 | 71471994 | ID=Msa0519410-mRNA-1:cds;Parent=Msa0519410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
