Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0522740 | XP_024634116.1 | 92.806 | 417 | 25 | 3 | 1 | 417 | 1 | 412 | 0.0 | 728 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0522740 | sp|Q9SCQ6|IDD2_ARATH | 48.000 | 400 | 195 | 6 | 22 | 414 | 34 | 427 | 7.58e-110 | 333 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0522740 | A0A396IZ01 | 92.086 | 417 | 25 | 4 | 1 | 417 | 1 | 409 | 0.0 | 717 |
Gene ID | Type | Classification |
---|---|---|
Msa0522740 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0384340 | Msa0522740 | 0.843572 | 1.290565e-58 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0522740 | MtrunA17_Chr3g0141431 | 92.086 | 417 | 25 | 4 | 1 | 417 | 1 | 409 | 0.0 | 717 |
Msa0522740 | MtrunA17_Chr8g0373541 | 48.380 | 432 | 147 | 10 | 15 | 380 | 26 | 447 | 1.11e-116 | 350 |
Msa0522740 | MtrunA17_Chr4g0040571 | 45.050 | 404 | 135 | 11 | 9 | 338 | 26 | 416 | 1.36e-105 | 321 |
Msa0522740 | MtrunA17_Chr1g0185121 | 51.703 | 323 | 127 | 7 | 15 | 330 | 33 | 333 | 3.37e-104 | 316 |
Msa0522740 | MtrunA17_Chr4g0029521 | 47.059 | 357 | 154 | 8 | 18 | 361 | 34 | 368 | 1.68e-102 | 313 |
Msa0522740 | MtrunA17_Chr1g0191991 | 54.890 | 317 | 113 | 8 | 19 | 328 | 60 | 353 | 3.53e-102 | 313 |
Msa0522740 | MtrunA17_Chr1g0181381 | 78.916 | 166 | 35 | 0 | 18 | 183 | 34 | 199 | 1.25e-101 | 311 |
Msa0522740 | MtrunA17_Chr2g0330171 | 50.592 | 338 | 125 | 9 | 20 | 350 | 44 | 346 | 1.83e-101 | 310 |
Msa0522740 | MtrunA17_Chr8g0342421 | 73.770 | 183 | 45 | 2 | 16 | 198 | 56 | 235 | 7.43e-100 | 307 |
Msa0522740 | MtrunA17_Chr7g0263941 | 50.459 | 327 | 105 | 8 | 18 | 332 | 30 | 311 | 1.14e-98 | 300 |
Msa0522740 | MtrunA17_Chr1g0162971 | 43.210 | 405 | 178 | 12 | 22 | 391 | 41 | 428 | 1.76e-97 | 298 |
Msa0522740 | MtrunA17_Chr1g0199101 | 76.829 | 164 | 37 | 1 | 20 | 183 | 45 | 207 | 8.13e-97 | 300 |
Msa0522740 | MtrunA17_Chr1g0151351 | 75.758 | 165 | 40 | 0 | 19 | 183 | 38 | 202 | 2.30e-96 | 296 |
Msa0522740 | MtrunA17_Chr7g0268961 | 52.201 | 318 | 103 | 9 | 32 | 329 | 32 | 320 | 9.14e-96 | 295 |
Msa0522740 | MtrunA17_Chr1g0163001 | 73.494 | 166 | 43 | 1 | 20 | 185 | 41 | 205 | 9.76e-94 | 291 |
Msa0522740 | MtrunA17_Chr2g0326381 | 72.892 | 166 | 45 | 0 | 22 | 187 | 32 | 197 | 9.26e-93 | 285 |
Msa0522740 | MtrunA17_Chr1g0210821 | 74.684 | 158 | 39 | 1 | 25 | 182 | 47 | 203 | 2.72e-91 | 286 |
Msa0522740 | MtrunA17_Chr2g0324991 | 78.788 | 132 | 27 | 1 | 33 | 164 | 3 | 133 | 3.76e-77 | 236 |
Msa0522740 | MtrunA17_Chr6g0479921 | 45.018 | 271 | 137 | 6 | 17 | 284 | 24 | 285 | 3.43e-69 | 226 |
Msa0522740 | MtrunA17_Chr8g0375521 | 59.615 | 156 | 62 | 1 | 22 | 176 | 27 | 182 | 8.05e-69 | 224 |
Msa0522740 | MtrunA17_Chr3g0123941 | 37.107 | 159 | 93 | 3 | 27 | 178 | 113 | 271 | 1.76e-24 | 103 |
Msa0522740 | MtrunA17_Chr1g0200421 | 35.714 | 154 | 88 | 3 | 36 | 178 | 236 | 389 | 7.58e-24 | 103 |
Msa0522740 | MtrunA17_Chr2g0320341 | 33.548 | 155 | 90 | 3 | 31 | 172 | 224 | 378 | 1.13e-23 | 102 |
Msa0522740 | MtrunA17_Chr8g0382121 | 35.526 | 152 | 87 | 5 | 35 | 175 | 109 | 260 | 5.26e-20 | 90.1 |
Msa0522740 | MtrunA17_Chr5g0422571 | 33.728 | 169 | 102 | 5 | 19 | 178 | 82 | 249 | 9.58e-20 | 89.0 |
Msa0522740 | MtrunA17_Chr8g0352011 | 34.783 | 138 | 80 | 4 | 43 | 172 | 171 | 306 | 1.20e-17 | 83.6 |
Msa0522740 | MtrunA17_Chr7g0258011 | 32.484 | 157 | 87 | 5 | 43 | 182 | 181 | 335 | 1.33e-17 | 83.6 |
Msa0522740 | MtrunA17_Chr2g0328921 | 31.928 | 166 | 95 | 5 | 15 | 172 | 123 | 278 | 1.49e-17 | 83.2 |
Msa0522740 | MtrunA17_Chr4g0026521 | 34.532 | 139 | 83 | 3 | 43 | 174 | 123 | 260 | 1.54e-17 | 82.8 |
Msa0522740 | MtrunA17_Chr1g0173841 | 33.571 | 140 | 83 | 4 | 43 | 174 | 220 | 357 | 4.99e-17 | 82.4 |
Msa0522740 | MtrunA17_Chr1g0198651 | 30.769 | 143 | 86 | 4 | 43 | 174 | 107 | 247 | 8.90e-17 | 80.5 |
Msa0522740 | MtrunA17_Chr4g0053341 | 31.293 | 147 | 93 | 3 | 33 | 172 | 69 | 214 | 1.49e-16 | 78.6 |
Msa0522740 | MtrunA17_Chr2g0321291 | 33.813 | 139 | 84 | 3 | 43 | 174 | 138 | 275 | 3.31e-16 | 79.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0522740 | AT3G50700.1 | 48.000 | 400 | 195 | 6 | 22 | 414 | 34 | 427 | 7.70e-111 | 333 |
Msa0522740 | AT3G13810.6 | 75.152 | 165 | 41 | 0 | 22 | 186 | 51 | 215 | 1.35e-97 | 301 |
Msa0522740 | AT3G13810.4 | 75.152 | 165 | 41 | 0 | 22 | 186 | 70 | 234 | 2.03e-97 | 301 |
Msa0522740 | AT3G13810.1 | 75.152 | 165 | 41 | 0 | 22 | 186 | 70 | 234 | 2.03e-97 | 301 |
Msa0522740 | AT3G13810.5 | 75.152 | 165 | 41 | 0 | 22 | 186 | 65 | 229 | 2.34e-97 | 300 |
Msa0522740 | AT1G03840.1 | 74.556 | 169 | 42 | 1 | 15 | 183 | 34 | 201 | 3.32e-97 | 300 |
Msa0522740 | AT1G55110.3 | 76.543 | 162 | 38 | 0 | 22 | 183 | 63 | 224 | 1.25e-96 | 297 |
Msa0522740 | AT1G55110.1 | 76.543 | 162 | 38 | 0 | 22 | 183 | 63 | 224 | 1.25e-96 | 297 |
Msa0522740 | AT1G55110.2 | 76.543 | 162 | 38 | 0 | 22 | 183 | 63 | 224 | 1.25e-96 | 297 |
Msa0522740 | AT1G14580.1 | 70.760 | 171 | 49 | 1 | 15 | 185 | 46 | 215 | 1.06e-95 | 295 |
Msa0522740 | AT1G14580.2 | 70.760 | 171 | 49 | 1 | 15 | 185 | 46 | 215 | 1.06e-95 | 295 |
Msa0522740 | AT4G02670.2 | 77.160 | 162 | 37 | 0 | 22 | 183 | 55 | 216 | 1.47e-95 | 293 |
Msa0522740 | AT4G02670.1 | 77.160 | 162 | 37 | 0 | 22 | 183 | 53 | 214 | 1.49e-95 | 292 |
Msa0522740 | AT5G03150.1 | 64.851 | 202 | 64 | 1 | 21 | 222 | 52 | 246 | 1.58e-95 | 296 |
Msa0522740 | AT1G14580.3 | 70.760 | 171 | 49 | 1 | 15 | 185 | 60 | 229 | 1.92e-95 | 295 |
Msa0522740 | AT2G02080.1 | 70.175 | 171 | 49 | 2 | 15 | 185 | 48 | 216 | 2.42e-94 | 293 |
Msa0522740 | AT2G02080.4 | 70.175 | 171 | 49 | 2 | 15 | 185 | 48 | 216 | 2.42e-94 | 293 |
Msa0522740 | AT2G02080.5 | 70.175 | 171 | 49 | 2 | 15 | 185 | 48 | 216 | 2.42e-94 | 293 |
Msa0522740 | AT2G02080.3 | 70.175 | 171 | 49 | 2 | 15 | 185 | 48 | 216 | 2.42e-94 | 293 |
Msa0522740 | AT1G03840.2 | 73.373 | 169 | 42 | 2 | 15 | 183 | 34 | 199 | 6.23e-94 | 291 |
Msa0522740 | AT5G60470.3 | 63.768 | 207 | 66 | 3 | 2 | 203 | 24 | 226 | 1.26e-93 | 289 |
Msa0522740 | AT5G60470.2 | 63.768 | 207 | 66 | 3 | 2 | 203 | 28 | 230 | 1.33e-93 | 289 |
Msa0522740 | AT5G44160.1 | 62.745 | 204 | 71 | 3 | 18 | 220 | 33 | 232 | 2.37e-93 | 289 |
Msa0522740 | AT3G45260.2 | 73.620 | 163 | 43 | 0 | 21 | 183 | 38 | 200 | 4.20e-93 | 288 |
Msa0522740 | AT3G45260.1 | 73.620 | 163 | 43 | 0 | 21 | 183 | 38 | 200 | 4.20e-93 | 288 |
Msa0522740 | AT3G13810.3 | 75.325 | 154 | 38 | 0 | 33 | 186 | 68 | 221 | 5.11e-91 | 284 |
Msa0522740 | AT3G13810.2 | 75.325 | 154 | 38 | 0 | 33 | 186 | 82 | 235 | 7.26e-91 | 284 |
Msa0522740 | AT2G02070.2 | 72.121 | 165 | 45 | 1 | 22 | 186 | 52 | 215 | 1.93e-90 | 285 |
Msa0522740 | AT2G02070.1 | 72.121 | 165 | 45 | 1 | 22 | 186 | 52 | 215 | 1.93e-90 | 285 |
Msa0522740 | AT5G60470.1 | 59.330 | 209 | 74 | 3 | 6 | 203 | 13 | 221 | 1.26e-86 | 271 |
Msa0522740 | AT5G44160.2 | 61.579 | 190 | 68 | 3 | 32 | 220 | 8 | 193 | 2.01e-85 | 267 |
Msa0522740 | AT2G02080.6 | 69.286 | 140 | 42 | 1 | 46 | 185 | 1 | 139 | 1.14e-77 | 248 |
Msa0522740 | AT2G02080.2 | 69.286 | 140 | 42 | 1 | 46 | 185 | 1 | 139 | 1.14e-77 | 248 |
Msa0522740 | AT1G68130.1 | 60.248 | 161 | 63 | 1 | 17 | 176 | 36 | 196 | 7.72e-71 | 229 |
Msa0522740 | AT2G01940.1 | 59.394 | 165 | 66 | 1 | 15 | 178 | 37 | 201 | 1.03e-70 | 229 |
Msa0522740 | AT1G25250.3 | 61.146 | 157 | 59 | 2 | 22 | 176 | 33 | 189 | 2.22e-69 | 224 |
Msa0522740 | AT2G01940.3 | 57.831 | 166 | 68 | 2 | 15 | 178 | 37 | 202 | 1.53e-66 | 219 |
Msa0522740 | AT1G25250.1 | 61.074 | 149 | 56 | 2 | 30 | 176 | 18 | 166 | 3.62e-66 | 215 |
Msa0522740 | AT5G66730.1 | 40.302 | 464 | 184 | 21 | 22 | 411 | 32 | 476 | 1.16e-64 | 215 |
Msa0522740 | AT1G68130.2 | 60.000 | 110 | 43 | 1 | 68 | 176 | 1 | 110 | 3.30e-44 | 157 |
Msa0522740 | AT2G01940.2 | 58.036 | 112 | 46 | 1 | 68 | 178 | 1 | 112 | 2.66e-43 | 155 |
Msa0522740 | AT1G25250.2 | 58.559 | 111 | 44 | 2 | 68 | 176 | 1 | 111 | 4.25e-42 | 150 |
Msa0522740 | AT5G22890.1 | 33.708 | 178 | 103 | 4 | 16 | 180 | 184 | 359 | 8.10e-24 | 102 |
Msa0522740 | AT1G34370.3 | 35.256 | 156 | 88 | 3 | 30 | 172 | 13 | 168 | 3.39e-23 | 99.0 |
Msa0522740 | AT1G34370.2 | 34.568 | 162 | 93 | 3 | 30 | 178 | 223 | 384 | 5.78e-23 | 101 |
Msa0522740 | AT1G34370.1 | 34.568 | 162 | 93 | 3 | 30 | 178 | 223 | 384 | 5.78e-23 | 101 |
Msa0522740 | AT1G13290.1 | 32.787 | 183 | 106 | 8 | 12 | 178 | 56 | 237 | 2.31e-18 | 85.5 |
Msa0522740 | AT1G51220.1 | 33.333 | 147 | 87 | 5 | 43 | 180 | 170 | 314 | 1.69e-17 | 83.6 |
Msa0522740 | AT3G20880.1 | 34.014 | 147 | 86 | 5 | 43 | 180 | 248 | 392 | 2.46e-17 | 84.0 |
Msa0522740 | AT3G57670.1 | 33.333 | 138 | 82 | 4 | 43 | 172 | 209 | 344 | 1.01e-16 | 81.6 |
Msa0522740 | AT1G08290.1 | 33.721 | 172 | 92 | 7 | 22 | 174 | 142 | 310 | 1.43e-16 | 80.9 |
Msa0522740 | AT1G34790.1 | 33.793 | 145 | 88 | 3 | 35 | 172 | 129 | 272 | 1.41e-15 | 77.4 |
Find 119 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTCTTGTTCTATATTCTT+TGG | 0.186815 | 3_4:-76044005 | Msa0522740:three_prime_UTR |
TCTGCTTTGCTCACATCTTT+TGG | 0.214858 | 3_4:-76044179 | Msa0522740:CDS |
GTGATCATTGTTGTTGTTAT+TGG | 0.219266 | 3_4:+76044529 | None:intergenic |
GCATCCTTGCTTCGTGCTTT+AGG | 0.267894 | 3_4:-76044410 | Msa0522740:CDS |
GTTGGTTGCTAGTAAAGTTT+TGG | 0.275277 | 3_4:+76047460 | None:intergenic |
CTAACACAGGGATCAAGTTT+TGG | 0.328062 | 3_4:+76047799 | None:intergenic |
TTATATACACCTGGCATTCC+AGG | 0.339087 | 3_4:+76047678 | None:intergenic |
ATCGAATCAATATCATTTAC+TGG | 0.347905 | 3_4:+76043967 | None:intergenic |
TAGACAAGAGTTTAGAAAAC+TGG | 0.354434 | 3_4:-76044134 | Msa0522740:three_prime_UTR |
CCCATGACCCGTGATCTTCT+CGG | 0.362988 | 3_4:-76044239 | Msa0522740:CDS |
GTGGCAGATTATCTTGGGCT+TGG | 0.371694 | 3_4:-76044302 | Msa0522740:CDS |
TGATATGATGAGGAGTATAT+TGG | 0.381830 | 3_4:+76047931 | None:intergenic |
TCTCGGTCTTAGCATGGGAT+TGG | 0.395080 | 3_4:-76044222 | Msa0522740:CDS |
GAGCCTGTGGCAGATTATCT+TGG | 0.397193 | 3_4:-76044308 | Msa0522740:CDS |
CTTCCCTGTGGGAATGAGAC+GGG | 0.408229 | 3_4:-76044278 | Msa0522740:CDS |
GAAAGCACGGTGAGAAGAAA+TGG | 0.413209 | 3_4:-76047223 | Msa0522740:CDS |
CCTCATCATATCATACTCAT+TGG | 0.418232 | 3_4:-76047921 | Msa0522740:five_prime_UTR |
ATCACTGATGATATTGTTGA+TGG | 0.423893 | 3_4:+76046864 | None:intergenic |
TTCTAAACTCTTGTCTATGC+AGG | 0.423930 | 3_4:+76044140 | None:intergenic |
CATGGCGGTGACAGCCTTGT+TGG | 0.441434 | 3_4:+76044695 | None:intergenic |
GGTTCCTTCTTCTTCTTCAC+CGG | 0.442532 | 3_4:-76046904 | Msa0522740:CDS |
ATGGCGGTGACAGCCTTGTT+GGG | 0.445830 | 3_4:+76044696 | None:intergenic |
CTCGGTCTTAGCATGGGATT+GGG | 0.446112 | 3_4:-76044221 | Msa0522740:CDS |
TTTCGTCGTTCGCTCGCTGC+CGG | 0.456453 | 3_4:+76047348 | None:intergenic |
AAAGCGATTACTTCAGCGTC+TGG | 0.457409 | 3_4:+76047488 | None:intergenic |
AGCCTGTGGCAGATTATCTT+GGG | 0.461391 | 3_4:-76044307 | Msa0522740:CDS |
ACCGAGAAGATCACGGGTCA+TGG | 0.464536 | 3_4:+76044238 | None:intergenic |
CGAAACCTCCCTGGAATGCC+AGG | 0.466668 | 3_4:-76047687 | Msa0522740:intron |
ACAACATGCCGTGGAAGCTC+CGG | 0.473951 | 3_4:-76047367 | Msa0522740:CDS |
GGAGTGAGTGGTGGCGTAGC+CGG | 0.477319 | 3_4:+76046885 | None:intergenic |
TGTGAAAAGTGAGAGGGTTG+TGG | 0.480243 | 3_4:+76044565 | None:intergenic |
AGCACGAAGCAAGGATGCAT+TGG | 0.486996 | 3_4:+76044415 | None:intergenic |
TGATCTTCTCGGTCTTAGCA+TGG | 0.494778 | 3_4:-76044228 | Msa0522740:CDS |
CTGGAAACAACTAGTTGTAC+TGG | 0.499057 | 3_4:-76044115 | Msa0522740:three_prime_UTR |
GTGAAAAGTGAGAGGGTTGT+GGG | 0.501902 | 3_4:+76044566 | None:intergenic |
TTCCCTGTGGGAATGAGACG+GGG | 0.506510 | 3_4:-76044277 | Msa0522740:CDS |
TGGTGAACGCAGGAAGGCTC+AGG | 0.513816 | 3_4:+76047299 | None:intergenic |
TACAGATCTCGCATATGAAA+CGG | 0.517803 | 3_4:+76047438 | None:intergenic |
GATCTTCTCGGTCTTAGCAT+GGG | 0.522076 | 3_4:-76044227 | Msa0522740:CDS |
GTTATTCCATTGATCTGTTG+TGG | 0.526630 | 3_4:+76044355 | None:intergenic |
GAAGATCACGGGTCATGGGC+TGG | 0.528136 | 3_4:+76044243 | None:intergenic |
TTGTTATTGGAGAGATAGAG+TGG | 0.529493 | 3_4:+76044542 | None:intergenic |
CTGTAACAAAGGATTCCAAC+GGG | 0.530824 | 3_4:-76047420 | Msa0522740:CDS |
GTTATTGTTATTGCTAACAC+AGG | 0.531187 | 3_4:+76047786 | None:intergenic |
AGAATATAGAACAAGAGAGT+TGG | 0.531503 | 3_4:+76044009 | None:intergenic |
ATATGCGAGATCTGTAACAA+AGG | 0.533818 | 3_4:-76047431 | Msa0522740:CDS |
CAGAAGGTTCTGCGATGGAA+TGG | 0.534515 | 3_4:-76046976 | Msa0522740:CDS |
TGTGTCCTCGCCGGTGAAGT+TGG | 0.538471 | 3_4:+76047387 | None:intergenic |
GCTCGCTGCCGGAGCTTCCA+CGG | 0.538801 | 3_4:+76047359 | None:intergenic |
TATATACACCTGGCATTCCA+GGG | 0.541617 | 3_4:+76047679 | None:intergenic |
CCGAGAAGATCACGGGTCAT+GGG | 0.542667 | 3_4:+76044239 | None:intergenic |
AATGCAGTAGCAGATAATAC+AGG | 0.542965 | 3_4:+76044473 | None:intergenic |
TTGGGCTTGGACTTCCCTGT+GGG | 0.543392 | 3_4:-76044289 | Msa0522740:CDS |
ACTTCCCTGTGGGAATGAGA+CGG | 0.547067 | 3_4:-76044279 | Msa0522740:CDS |
TTGTCGTCTACTCAGTGCTC+AGG | 0.547564 | 3_4:-76046828 | Msa0522740:intron |
GCAGCACCACAACAGATCAA+TGG | 0.551093 | 3_4:-76044361 | Msa0522740:CDS |
TGAGGAGTATATTGGACAAG+AGG | 0.551363 | 3_4:+76047939 | None:intergenic |
GTAGCAGATAATACAGGTTG+TGG | 0.552729 | 3_4:+76044479 | None:intergenic |
GTTGGAGATTCTGTTCCCGT+TGG | 0.557245 | 3_4:+76047405 | None:intergenic |
AGGTCACCGAGTGCTCTTGA+AGG | 0.557256 | 3_4:+76047272 | None:intergenic |
GTGAATGAGAGTTGGAAGGA+GGG | 0.557913 | 3_4:-76046954 | Msa0522740:CDS |
TAGTTGTACTGGCCCACCCC+AGG | 0.558567 | 3_4:-76044104 | Msa0522740:three_prime_UTR |
CTTGGGCTTGGACTTCCCTG+TGG | 0.559790 | 3_4:-76044290 | Msa0522740:CDS |
CACAATCCTTCAAGAGCACT+CGG | 0.561083 | 3_4:-76047278 | Msa0522740:CDS |
AGAGTGGTGTGAAAAGTGAG+AGG | 0.562539 | 3_4:+76044558 | None:intergenic |
AACAGAATCTCCAACTTCAC+CGG | 0.564489 | 3_4:-76047397 | Msa0522740:CDS |
ACGGCATGTTGTGTCCTCGC+CGG | 0.565267 | 3_4:+76047378 | None:intergenic |
TCCCTGTGGGAATGAGACGG+GGG | 0.566052 | 3_4:-76044276 | Msa0522740:CDS |
AGAGAGTATAAATGTGATTG+TGG | 0.571517 | 3_4:-76047128 | Msa0522740:CDS |
ATGGAATGGTGAATGAGAGT+TGG | 0.571967 | 3_4:-76046962 | Msa0522740:CDS |
GAAGTAGAAGCGTTTGAACA+TGG | 0.574940 | 3_4:+76044677 | None:intergenic |
ATCAACAATATCATCAGTGA+TGG | 0.575729 | 3_4:-76046862 | Msa0522740:CDS |
AGAGCACTCGGTGACCTCAC+AGG | 0.584571 | 3_4:-76047266 | Msa0522740:CDS |
AATGAGAGTTGGAAGGAGGG+TGG | 0.585791 | 3_4:-76046951 | Msa0522740:CDS |
AGCCCAAGATAATCTGCCAC+AGG | 0.587033 | 3_4:+76044305 | None:intergenic |
CTGTGTACACAACGAGGCGG+CGG | 0.589206 | 3_4:+76047839 | None:intergenic |
GCTAAGACCGAGAAGATCAC+GGG | 0.592165 | 3_4:+76044232 | None:intergenic |
TCTGTGATAGAGAAAGATGT+GGG | 0.592327 | 3_4:+76044590 | None:intergenic |
GGCGAGGACACAACATGCCG+TGG | 0.596259 | 3_4:-76047376 | Msa0522740:CDS |
CAAGCCTAAAGCACGAAGCA+AGG | 0.596303 | 3_4:+76044406 | None:intergenic |
TGCTAAGACCGAGAAGATCA+CGG | 0.597202 | 3_4:+76044231 | None:intergenic |
CCAATGAGTATGATATGATG+AGG | 0.598194 | 3_4:+76047921 | None:intergenic |
TGAAGGATTGTGGTGAACGC+AGG | 0.600303 | 3_4:+76047289 | None:intergenic |
GGTGAATGAGAGTTGGAAGG+AGG | 0.600831 | 3_4:-76046955 | Msa0522740:CDS |
AAAGTTCATATGAAGAACTG+TGG | 0.604717 | 3_4:-76047155 | Msa0522740:CDS |
GGACAAATACTTACGAGAGA+AGG | 0.614248 | 3_4:+76047860 | None:intergenic |
GATATTGTTGATGGAGTGAG+TGG | 0.614576 | 3_4:+76046873 | None:intergenic |
GACAAACGTACACTTTCTTG+CGG | 0.615008 | 3_4:+76047321 | None:intergenic |
TAGCAATAACGCTGTTGCCG+TGG | 0.616354 | 3_4:-76046925 | Msa0522740:CDS |
ATTGTTGATGGAGTGAGTGG+TGG | 0.622386 | 3_4:+76046876 | None:intergenic |
CCCTGTGGGAATGAGACGGG+GGG | 0.624937 | 3_4:-76044275 | Msa0522740:CDS |
ATACTTACGAGAGAAGGAAG+AGG | 0.628144 | 3_4:+76047866 | None:intergenic |
AAACGTACACTTTCTTGCGG+AGG | 0.628231 | 3_4:+76047324 | None:intergenic |
TCTGTAACAAAGGATTCCAA+CGG | 0.628991 | 3_4:-76047421 | Msa0522740:CDS |
GGATTGTGGTGAACGCAGGA+AGG | 0.629061 | 3_4:+76047293 | None:intergenic |
CACTGAGTAGACGACAAAGT+AGG | 0.633598 | 3_4:+76046834 | None:intergenic |
TTATTGTTATTGCTAACACA+GGG | 0.635591 | 3_4:+76047787 | None:intergenic |
GATCTCGCATATGAAACGGT+TGG | 0.639364 | 3_4:+76047442 | None:intergenic |
TACTTACGAGAGAAGGAAGA+GGG | 0.639493 | 3_4:+76047867 | None:intergenic |
ACGCACAGAAGGTTCTGCGA+TGG | 0.641919 | 3_4:-76046981 | Msa0522740:CDS |
GGTGTAGTAGAAAGTGCCAT+TGG | 0.644739 | 3_4:+76047729 | None:intergenic |
TAGCATGGGATTGGGTAGAG+AGG | 0.647406 | 3_4:-76044213 | Msa0522740:CDS |
GAGTGGTGTGAAAAGTGAGA+GGG | 0.666933 | 3_4:+76044559 | None:intergenic |
ACATTGCAGAAAACCCAACA+AGG | 0.670424 | 3_4:-76044709 | Msa0522740:CDS |
GTAGCCGGTGAAGAAGAAGA+AGG | 0.672927 | 3_4:+76046900 | None:intergenic |
TGAAGAAGAAGAAGGAACCA+CGG | 0.676573 | 3_4:+76046908 | None:intergenic |
GTAGTAGAAAGTGCCATTGG+TGG | 0.678545 | 3_4:+76047732 | None:intergenic |
AATGGTGAATGAGAGTTGGA+AGG | 0.679457 | 3_4:-76046958 | Msa0522740:CDS |
CGAGTGCTCTTGAAGGATTG+TGG | 0.681807 | 3_4:+76047279 | None:intergenic |
ACAGATCAATGGAATAACCA+TGG | 0.682178 | 3_4:-76044350 | Msa0522740:CDS |
TTCTGTGATAGAGAAAGATG+TGG | 0.682251 | 3_4:+76044589 | None:intergenic |
CTGTGATAGAGAAAGATGTG+GGG | 0.685180 | 3_4:+76044591 | None:intergenic |
AATCTCCAACTTCACCGGCG+AGG | 0.689245 | 3_4:-76047392 | Msa0522740:CDS |
AAAACAAGAGAATGAGCCTG+TGG | 0.695424 | 3_4:-76044321 | Msa0522740:CDS |
GATGTGGGGATATCTGAGTG+AGG | 0.723861 | 3_4:+76044605 | None:intergenic |
ATACACCTGGCATTCCAGGG+AGG | 0.741719 | 3_4:+76047682 | None:intergenic |
GTAGAAGCGTTTGAACATGG+CGG | 0.760919 | 3_4:+76044680 | None:intergenic |
GTACTGTGTACACAACGAGG+CGG | 0.772511 | 3_4:+76047836 | None:intergenic |
GGTGTACTGTGTACACAACG+AGG | 0.805771 | 3_4:+76047833 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGATTTATTTATATAATAG+TGG | + | chr3_4:76044254-76044273 | None:intergenic | 10.0% |
!!! | TTATTTGTTTATTTGTTAAT+AGG | - | chr3_4:76044879-76044898 | Msa0522740:intron | 10.0% |
!!! | ATTAAATTTATTGTTTTTTG+TGG | + | chr3_4:76045231-76045250 | None:intergenic | 10.0% |
!!! | AAAAAAATTGTTATTTTGAT+AGG | - | chr3_4:76045323-76045342 | Msa0522740:intron | 10.0% |
!! | ATAATAAATTCCTTATTATT+TGG | - | chr3_4:76045663-76045682 | Msa0522740:intron | 10.0% |
!!! | AGTTTTTTTTTTATTAAGAA+AGG | - | chr3_4:76045864-76045883 | Msa0522740:intron | 10.0% |
!! | AGATAAAATAATATGACAAA+TGG | + | chr3_4:76045369-76045388 | None:intergenic | 15.0% |
!!! | TTTGTCATATTATTTTATCT+AGG | - | chr3_4:76045369-76045388 | Msa0522740:intron | 15.0% |
!! | ACAAAACTGTAAATATTTAT+AGG | - | chr3_4:76045599-76045618 | Msa0522740:intron | 15.0% |
!! | CAAAACTGTAAATATTTATA+GGG | - | chr3_4:76045600-76045619 | Msa0522740:intron | 15.0% |
!! | CAGATAAAATAAATAGTATT+TGG | - | chr3_4:76045920-76045939 | Msa0522740:intron | 15.0% |
!! | ATAAAATAAATAGTATTTGG+TGG | - | chr3_4:76045923-76045942 | Msa0522740:intron | 15.0% |
!!! | CTTAAAGAAATTTTTTACTA+TGG | + | chr3_4:76046064-76046083 | None:intergenic | 15.0% |
!!! | ATAATTTTGAGACAAATTTT+TGG | + | chr3_4:76046212-76046231 | None:intergenic | 15.0% |
!!! | CAAATATCATTTTTATTTAC+AGG | - | chr3_4:76046236-76046255 | Msa0522740:intron | 15.0% |
!! | CATACTTTAATGTTATTATA+AGG | - | chr3_4:76046673-76046692 | Msa0522740:intron | 15.0% |
!!! | TTTTTTAAATTTTCTCAATC+AGG | - | chr3_4:76047063-76047082 | Msa0522740:intron | 15.0% |
!! | GATATTTATTTATATACACC+TGG | + | chr3_4:76044232-76044251 | None:intergenic | 20.0% |
!!! | TTTTGAGAGATAATTAAAGA+TGG | + | chr3_4:76044824-76044843 | None:intergenic | 20.0% |
!!! | TTGTTTATTTGTTAATAGGA+AGG | - | chr3_4:76044883-76044902 | Msa0522740:intron | 20.0% |
!! | TAGTAATTCATTTCCTATTT+GGG | - | chr3_4:76045103-76045122 | Msa0522740:intron | 20.0% |
!!! | TTGTTTTTTGTGGAAAATTA+AGG | + | chr3_4:76045221-76045240 | None:intergenic | 20.0% |
!!! | TCATTTGTTCTTTTTAATTG+TGG | - | chr3_4:76045268-76045287 | Msa0522740:intron | 20.0% |
!!! | TCTTTTTAATTGTGGTATTA+AGG | - | chr3_4:76045276-76045295 | Msa0522740:intron | 20.0% |
!! | CAAAACTGTGAATATTTATA+GGG | + | chr3_4:76045412-76045431 | None:intergenic | 20.0% |
!! | ACAAAACTGTGAATATTTAT+AGG | + | chr3_4:76045413-76045432 | None:intergenic | 20.0% |
!! | TGCTGATGAAAAAATTTATA+AGG | + | chr3_4:76045474-76045493 | None:intergenic | 20.0% |
!!! | AAAATTTCCATCAAGATTTT+TGG | - | chr3_4:76045509-76045528 | Msa0522740:intron | 20.0% |
!! | AGAGAGATAAATAGATAAAA+GGG | + | chr3_4:76045643-76045662 | None:intergenic | 20.0% |
!! | TAGAGAGATAAATAGATAAA+AGG | + | chr3_4:76045644-76045663 | None:intergenic | 20.0% |
!! | CTTCATTTATCCAAATAATA+AGG | + | chr3_4:76045676-76045695 | None:intergenic | 20.0% |
!!! | TTTTTTTTTCATCTTCCTTT+AGG | - | chr3_4:76046166-76046185 | Msa0522740:intron | 20.0% |
!! | AAATGAGAATAATATGATGA+GGG | + | chr3_4:76046302-76046321 | None:intergenic | 20.0% |
!! | TAAATGAGAATAATATGATG+AGG | + | chr3_4:76046303-76046322 | None:intergenic | 20.0% |
!!! | GGTTAATGCTTATTAATTTT+TGG | - | chr3_4:76046515-76046534 | Msa0522740:intron | 20.0% |
!!! | AAAACTTTTCTAGATTATCA+TGG | + | chr3_4:76046561-76046580 | None:intergenic | 20.0% |
!! | TCAAAGATCTTTATTAATCA+TGG | - | chr3_4:76046585-76046604 | Msa0522740:intron | 20.0% |
!! | AATCTTGAAAAAACAACTAA+TGG | + | chr3_4:76047146-76047165 | None:intergenic | 20.0% |
! | ATCATACTCATTGGAAAAAA+AGG | - | chr3_4:76043986-76044005 | Msa0522740:three_prime_UTR | 25.0% |
!! | TTATTGTTATTGCTAACACA+GGG | + | chr3_4:76044114-76044133 | None:intergenic | 25.0% |
! | CTAGTAATTCATTTCCTATT+TGG | - | chr3_4:76045102-76045121 | Msa0522740:intron | 25.0% |
!!! | TCATTTTTATTTACAGGTTG+AGG | - | chr3_4:76046242-76046261 | Msa0522740:intron | 25.0% |
!!! | CATTTTTATTTACAGGTTGA+GGG | - | chr3_4:76046243-76046262 | Msa0522740:intron | 25.0% |
!!! | ATTTCATTTTTGTGTTGTCT+CGG | + | chr3_4:76046274-76046293 | None:intergenic | 25.0% |
! | CAAAGTCCTTATACTATATT+TGG | + | chr3_4:76046738-76046757 | None:intergenic | 25.0% |
! | ACTAGTTAAGGAAACAAAAA+AGG | + | chr3_4:76046820-76046839 | None:intergenic | 25.0% |
!!! | CAATTGTCACTTTATAACAA+GGG | + | chr3_4:76046866-76046885 | None:intergenic | 25.0% |
!!! | TCAATTGTCACTTTATAACA+AGG | + | chr3_4:76046867-76046886 | None:intergenic | 25.0% |
! | AGCAAAACAAAAAAATTCCT+GGG | + | chr3_4:76047814-76047833 | None:intergenic | 25.0% |
! | AAGCAAAACAAAAAAATTCC+TGG | + | chr3_4:76047815-76047834 | None:intergenic | 25.0% |
! | ATCGAATCAATATCATTTAC+TGG | + | chr3_4:76047934-76047953 | None:intergenic | 25.0% |
! | TGATATGATGAGGAGTATAT+TGG | + | chr3_4:76043970-76043989 | None:intergenic | 30.0% |
! | GTTATTGTTATTGCTAACAC+AGG | + | chr3_4:76044115-76044134 | None:intergenic | 30.0% |
! | TTGGTTGCTAGTAAAGTTTT+GGG | + | chr3_4:76044440-76044459 | None:intergenic | 30.0% |
AAAGTTCATATGAAGAACTG+TGG | - | chr3_4:76044743-76044762 | Msa0522740:intron | 30.0% | |
! | AGAGAGTATAAATGTGATTG+TGG | - | chr3_4:76044770-76044789 | Msa0522740:intron | 30.0% |
! | ATAATTTTGTTACGCACAGA+AGG | - | chr3_4:76044906-76044925 | Msa0522740:intron | 30.0% |
ATCACTGATGATATTGTTGA+TGG | + | chr3_4:76045037-76045056 | None:intergenic | 30.0% | |
ATCAACAATATCATCAGTGA+TGG | - | chr3_4:76045036-76045055 | Msa0522740:intron | 30.0% | |
! | AATCTTTTCCAAAACAAAGG+CGG | + | chr3_4:76045160-76045179 | None:intergenic | 30.0% |
! | ACGAATCTTTTCCAAAACAA+AGG | + | chr3_4:76045163-76045182 | None:intergenic | 30.0% |
TTGCAATTGCAAATTGATAG+TGG | + | chr3_4:76045186-76045205 | None:intergenic | 30.0% | |
ACTATCAATTTGCAATTGCA+AGG | - | chr3_4:76045185-76045204 | Msa0522740:intron | 30.0% | |
CTATCAATTTGCAATTGCAA+GGG | - | chr3_4:76045186-76045205 | Msa0522740:intron | 30.0% | |
! | TGCTGACGGAAAATTTTATA+GGG | + | chr3_4:76045443-76045462 | None:intergenic | 30.0% |
! | ATGCTGACGGAAAATTTTAT+AGG | + | chr3_4:76045444-76045463 | None:intergenic | 30.0% |
ATAAGGACTAAAAATGCTGA+CGG | + | chr3_4:76045457-76045476 | None:intergenic | 30.0% | |
!! | TTGATGGAAATTTTTGACTG+GGG | + | chr3_4:76045503-76045522 | None:intergenic | 30.0% |
!! | CTTGATGGAAATTTTTGACT+GGG | + | chr3_4:76045504-76045523 | None:intergenic | 30.0% |
! | TCTTGATGGAAATTTTTGAC+TGG | + | chr3_4:76045505-76045524 | None:intergenic | 30.0% |
TTAAGGACCAAAAATCTTGA+TGG | + | chr3_4:76045519-76045538 | None:intergenic | 30.0% | |
! | CATTTTCCTTAAGCACTTTA+AGG | + | chr3_4:76045536-76045555 | None:intergenic | 30.0% |
TGACCATATAAGAATGTGTT+CGG | + | chr3_4:76045900-76045919 | None:intergenic | 30.0% | |
TCTCGCATATTATAACCTAA+AGG | + | chr3_4:76046184-76046203 | None:intergenic | 30.0% | |
CACTTGTAAATTTACTTGTG+TGG | - | chr3_4:76046494-76046513 | Msa0522740:intron | 30.0% | |
AGGGAACCAAATATAGTATA+AGG | - | chr3_4:76046729-76046748 | Msa0522740:intron | 30.0% | |
ACAATTGATCCTAAATGAAC+AGG | - | chr3_4:76046879-76046898 | Msa0522740:CDS | 30.0% | |
CAATTGATCCTAAATGAACA+GGG | - | chr3_4:76046880-76046899 | Msa0522740:CDS | 30.0% | |
AGTCAAAAGGGGAAAATAAT+AGG | - | chr3_4:76046914-76046933 | Msa0522740:CDS | 30.0% | |
AAAAGGGGAAAATAATAGGA+AGG | - | chr3_4:76046918-76046937 | Msa0522740:CDS | 30.0% | |
ATTGAATGCATAGAGCAAAA+CGG | + | chr3_4:76046964-76046983 | None:intergenic | 30.0% | |
! | GTGATCATTGTTGTTGTTAT+TGG | + | chr3_4:76047372-76047391 | None:intergenic | 30.0% |
TAGACAAGAGTTTAGAAAAC+TGG | - | chr3_4:76047764-76047783 | Msa0522740:exon | 30.0% | |
GCAAAACAAAAAAATTCCTG+GGG | + | chr3_4:76047813-76047832 | None:intergenic | 30.0% | |
!!! | TTTTGTTTTGCTTTTGTGAC+TGG | - | chr3_4:76047822-76047841 | Msa0522740:five_prime_UTR | 30.0% |
CCAAAAATAAGAAAGAGAGT+TGG | + | chr3_4:76047859-76047878 | None:intergenic | 30.0% | |
!!! | CCAACTCTCTTTCTTATTTT+TGG | - | chr3_4:76047856-76047875 | Msa0522740:five_prime_UTR | 30.0% |
!!! | ACTCTCTTTCTTATTTTTGG+AGG | - | chr3_4:76047859-76047878 | Msa0522740:five_prime_UTR | 30.0% |
!!! | CTCTCTTTCTTATTTTTGGA+GGG | - | chr3_4:76047860-76047879 | Msa0522740:five_prime_UTR | 30.0% |
AGAATATAGAACAAGAGAGT+TGG | + | chr3_4:76047892-76047911 | None:intergenic | 30.0% | |
CTCTCTTGTTCTATATTCTT+TGG | - | chr3_4:76047893-76047912 | Msa0522740:five_prime_UTR | 30.0% | |
CCAATGAGTATGATATGATG+AGG | + | chr3_4:76043980-76043999 | None:intergenic | 35.0% | |
CCTCATCATATCATACTCAT+TGG | - | chr3_4:76043977-76043996 | Msa0522740:three_prime_UTR | 35.0% | |
!!! | GAAGTATTTTTCTGAGGTTC+TGG | + | chr3_4:76044145-76044164 | None:intergenic | 35.0% |
GAAAAATACTTCACCACCAA+TGG | - | chr3_4:76044153-76044172 | Msa0522740:exon | 35.0% | |
!!! | AGGTTTCGCTTCTTTTTTGA+CGG | + | chr3_4:76044199-76044218 | None:intergenic | 35.0% |
! | GTTGGTTGCTAGTAAAGTTT+TGG | + | chr3_4:76044441-76044460 | None:intergenic | 35.0% |
TACAGATCTCGCATATGAAA+CGG | + | chr3_4:76044463-76044482 | None:intergenic | 35.0% | |
ATATGCGAGATCTGTAACAA+AGG | - | chr3_4:76044467-76044486 | Msa0522740:CDS | 35.0% | |
TCTGTAACAAAGGATTCCAA+CGG | - | chr3_4:76044477-76044496 | Msa0522740:CDS | 35.0% | |
! | AAGCACTTTTGTAGAAAGCA+CGG | - | chr3_4:76044662-76044681 | Msa0522740:CDS | 35.0% |
! | CAAAAGTGCAAAACCCAAAT+AGG | + | chr3_4:76045119-76045138 | None:intergenic | 35.0% |
! | ATCTTTTCCAAAACAAAGGC+GGG | + | chr3_4:76045159-76045178 | None:intergenic | 35.0% |
! | TTTGGTCCTTAAAGTGCTTA+AGG | - | chr3_4:76045527-76045546 | Msa0522740:intron | 35.0% |
TGCTTAAGGAAAATGTCACA+GGG | - | chr3_4:76045541-76045560 | Msa0522740:intron | 35.0% | |
AAGCCGAACACATTCTTATA+TGG | - | chr3_4:76045894-76045913 | Msa0522740:intron | 35.0% | |
GATTATCATGGAAGAATTGC+AGG | + | chr3_4:76046549-76046568 | None:intergenic | 35.0% | |
TTGAATGCATAGAGCAAAAC+GGG | + | chr3_4:76046963-76046982 | None:intergenic | 35.0% | |
TCTGTGATAGAGAAAGATGT+GGG | + | chr3_4:76047311-76047330 | None:intergenic | 35.0% | |
TTCTGTGATAGAGAAAGATG+TGG | + | chr3_4:76047312-76047331 | None:intergenic | 35.0% | |
! | TTGTTATTGGAGAGATAGAG+TGG | + | chr3_4:76047359-76047378 | None:intergenic | 35.0% |
!! | CAGTTTTGTAATGGGGAAAA+GGG | + | chr3_4:76047394-76047413 | None:intergenic | 35.0% |
!! | TGGAGATGCAGTTTTGTAAT+GGG | + | chr3_4:76047402-76047421 | None:intergenic | 35.0% |
AATGCAGTAGCAGATAATAC+AGG | + | chr3_4:76047428-76047447 | None:intergenic | 35.0% | |
GTTATTCCATTGATCTGTTG+TGG | + | chr3_4:76047546-76047565 | None:intergenic | 35.0% | |
ACAGATCAATGGAATAACCA+TGG | - | chr3_4:76047548-76047567 | Msa0522740:intron | 35.0% | |
!!! | TCTCTTGTTTTACATGACCA+TGG | + | chr3_4:76047568-76047587 | None:intergenic | 35.0% |
TTCTAAACTCTTGTCTATGC+AGG | + | chr3_4:76047761-76047780 | None:intergenic | 35.0% | |
AACAAAAAAATTCCTGGGGT+GGG | + | chr3_4:76047809-76047828 | None:intergenic | 35.0% | |
AAACAAAAAAATTCCTGGGG+TGG | + | chr3_4:76047810-76047829 | None:intergenic | 35.0% | |
! | TGAGGAGTATATTGGACAAG+AGG | + | chr3_4:76043962-76043981 | None:intergenic | 40.0% |
TACTTACGAGAGAAGGAAGA+GGG | + | chr3_4:76044034-76044053 | None:intergenic | 40.0% | |
ATACTTACGAGAGAAGGAAG+AGG | + | chr3_4:76044035-76044054 | None:intergenic | 40.0% | |
GGACAAATACTTACGAGAGA+AGG | + | chr3_4:76044041-76044060 | None:intergenic | 40.0% | |
!! | CAAGTTTTGGTGTAGTAGTG+TGG | + | chr3_4:76044089-76044108 | None:intergenic | 40.0% |
! | CTAACACAGGGATCAAGTTT+TGG | + | chr3_4:76044102-76044121 | None:intergenic | 40.0% |
!! | GGTGGTGAAGTATTTTTCTG+AGG | + | chr3_4:76044151-76044170 | None:intergenic | 40.0% |
!!! | TTTCGCTTCTTTTTTGACGG+TGG | + | chr3_4:76044196-76044215 | None:intergenic | 40.0% |
TATATACACCTGGCATTCCA+GGG | + | chr3_4:76044222-76044241 | None:intergenic | 40.0% | |
TTATATACACCTGGCATTCC+AGG | + | chr3_4:76044223-76044242 | None:intergenic | 40.0% | |
CTGTAACAAAGGATTCCAAC+GGG | - | chr3_4:76044478-76044497 | Msa0522740:CDS | 40.0% | |
AACAGAATCTCCAACTTCAC+CGG | - | chr3_4:76044501-76044520 | Msa0522740:CDS | 40.0% | |
GACAAACGTACACTTTCTTG+CGG | + | chr3_4:76044580-76044599 | None:intergenic | 40.0% | |
! | ATTGTGGCACTGTGTTTTCT+AGG | - | chr3_4:76044786-76044805 | Msa0522740:intron | 40.0% |
ATGGAATGGTGAATGAGAGT+TGG | - | chr3_4:76044936-76044955 | Msa0522740:intron | 40.0% | |
AATGGTGAATGAGAGTTGGA+AGG | - | chr3_4:76044940-76044959 | Msa0522740:intron | 40.0% | |
TGAAGAAGAAGAAGGAACCA+CGG | + | chr3_4:76044993-76045012 | None:intergenic | 40.0% | |
! | GATATTGTTGATGGAGTGAG+TGG | + | chr3_4:76045028-76045047 | None:intergenic | 40.0% |
!! | GGTTTTGCACTTTTGTTTCC+TGG | - | chr3_4:76045124-76045143 | Msa0522740:intron | 40.0% |
GTGCTTAAGGAAAATGTCAC+AGG | - | chr3_4:76045540-76045559 | Msa0522740:intron | 40.0% | |
TAGTAATGCAGCCCACATTA+TGG | - | chr3_4:76045779-76045798 | Msa0522740:intron | 40.0% | |
TGTGAGAGGATCCATAATGT+GGG | + | chr3_4:76045793-76045812 | None:intergenic | 40.0% | |
TTGTTTCCTTAACTAGTGCC+CGG | - | chr3_4:76046823-76046842 | Msa0522740:intron | 40.0% | |
TGATCCTAAATGAACAGGGA+AGG | - | chr3_4:76046884-76046903 | Msa0522740:CDS | 40.0% | |
GAAGGCAGTGTAAGTCAAAA+GGG | - | chr3_4:76046902-76046921 | Msa0522740:CDS | 40.0% | |
AAGGCAGTGTAAGTCAAAAG+GGG | - | chr3_4:76046903-76046922 | Msa0522740:CDS | 40.0% | |
TGAAACAGTGAAACACAAGG+GGG | + | chr3_4:76047015-76047034 | None:intergenic | 40.0% | |
CTGAAACAGTGAAACACAAG+GGG | + | chr3_4:76047016-76047035 | None:intergenic | 40.0% | |
CCTGAAACAGTGAAACACAA+GGG | + | chr3_4:76047017-76047036 | None:intergenic | 40.0% | |
ACCTGAAACAGTGAAACACA+AGG | + | chr3_4:76047018-76047037 | None:intergenic | 40.0% | |
ACATTGCAGAAAACCCAACA+AGG | - | chr3_4:76047189-76047208 | Msa0522740:CDS | 40.0% | |
!! | GAAGTAGAAGCGTTTGAACA+TGG | + | chr3_4:76047224-76047243 | None:intergenic | 40.0% |
CTGTGATAGAGAAAGATGTG+GGG | + | chr3_4:76047310-76047329 | None:intergenic | 40.0% | |
!! | GCAGTTTTGTAATGGGGAAA+AGG | + | chr3_4:76047395-76047414 | None:intergenic | 40.0% |
!! | GGAGATGCAGTTTTGTAATG+GGG | + | chr3_4:76047401-76047420 | None:intergenic | 40.0% |
!! | GTGGAGATGCAGTTTTGTAA+TGG | + | chr3_4:76047403-76047422 | None:intergenic | 40.0% |
GTAGCAGATAATACAGGTTG+TGG | + | chr3_4:76047422-76047441 | None:intergenic | 40.0% | |
AAAACAAGAGAATGAGCCTG+TGG | - | chr3_4:76047577-76047596 | Msa0522740:intron | 40.0% | |
! | TCTGCTTTGCTCACATCTTT+TGG | - | chr3_4:76047719-76047738 | Msa0522740:CDS | 40.0% |
! | CTTTGCTCACATCTTTTGGA+GGG | - | chr3_4:76047723-76047742 | Msa0522740:CDS | 40.0% |
CTGGAAACAACTAGTTGTAC+TGG | - | chr3_4:76047783-76047802 | Msa0522740:five_prime_UTR | 40.0% | |
!! | GTAGTAGAAAGTGCCATTGG+TGG | + | chr3_4:76044169-76044188 | None:intergenic | 45.0% |
!! | GGTGTAGTAGAAAGTGCCAT+TGG | + | chr3_4:76044172-76044191 | None:intergenic | 45.0% |
AAAAAGAAGCGAAACCTCCC+TGG | - | chr3_4:76044202-76044221 | Msa0522740:CDS | 45.0% | |
AAAGCGATTACTTCAGCGTC+TGG | + | chr3_4:76044413-76044432 | None:intergenic | 45.0% | |
GATCTCGCATATGAAACGGT+TGG | + | chr3_4:76044459-76044478 | None:intergenic | 45.0% | |
AAACGTACACTTTCTTGCGG+AGG | + | chr3_4:76044577-76044596 | None:intergenic | 45.0% | |
!! | CACAATCCTTCAAGAGCACT+CGG | - | chr3_4:76044620-76044639 | Msa0522740:CDS | 45.0% |
!!! | AGTGCTTTTTCACTCCTGTG+AGG | + | chr3_4:76044649-76044668 | None:intergenic | 45.0% |
! | GAAAGCACGGTGAGAAGAAA+TGG | - | chr3_4:76044675-76044694 | Msa0522740:CDS | 45.0% |
GTGAATGAGAGTTGGAAGGA+GGG | - | chr3_4:76044944-76044963 | Msa0522740:intron | 45.0% | |
GGTTCCTTCTTCTTCTTCAC+CGG | - | chr3_4:76044994-76045013 | Msa0522740:intron | 45.0% | |
! | ATTGTTGATGGAGTGAGTGG+TGG | + | chr3_4:76045025-76045044 | None:intergenic | 45.0% |
CACTGAGTAGACGACAAAGT+AGG | + | chr3_4:76045067-76045086 | None:intergenic | 45.0% | |
!! | TCTCAAACCCGCCTTTGTTT+TGG | - | chr3_4:76045149-76045168 | Msa0522740:intron | 45.0% |
GTGTGAGAGGATCCATAATG+TGG | + | chr3_4:76045794-76045813 | None:intergenic | 45.0% | |
ATCCTCTCACACGATGACAA+TGG | - | chr3_4:76045802-76045821 | Msa0522740:intron | 45.0% | |
TCCTCTCACACGATGACAAT+GGG | - | chr3_4:76045803-76045822 | Msa0522740:intron | 45.0% | |
AAAATGTTAACGAGTGCCCC+CGG | - | chr3_4:76046696-76046715 | Msa0522740:intron | 45.0% | |
TGTTTCCTTAACTAGTGCCC+GGG | - | chr3_4:76046824-76046843 | Msa0522740:intron | 45.0% | |
! | GTCTTGTTAACTAATGCCCC+GGG | + | chr3_4:76046844-76046863 | None:intergenic | 45.0% |
!! | GGTCTTGTTAACTAATGCCC+CGG | + | chr3_4:76046845-76046864 | None:intergenic | 45.0% |
ACTGCCTTCCCTGTTCATTT+AGG | + | chr3_4:76046891-76046910 | None:intergenic | 45.0% | |
GGAAGGCAGTGTAAGTCAAA+AGG | - | chr3_4:76046901-76046920 | Msa0522740:CDS | 45.0% | |
CACAAGGGGGAAAAAAGCTT+GGG | + | chr3_4:76047002-76047021 | None:intergenic | 45.0% | |
ACACAAGGGGGAAAAAAGCT+TGG | + | chr3_4:76047003-76047022 | None:intergenic | 45.0% | |
CCCTTGTGTTTCACTGTTTC+AGG | - | chr3_4:76047014-76047033 | Msa0522740:intron | 45.0% | |
!! | GTAGAAGCGTTTGAACATGG+CGG | + | chr3_4:76047221-76047240 | None:intergenic | 45.0% |
GTGAAAAGTGAGAGGGTTGT+GGG | + | chr3_4:76047335-76047354 | None:intergenic | 45.0% | |
TGTGAAAAGTGAGAGGGTTG+TGG | + | chr3_4:76047336-76047355 | None:intergenic | 45.0% | |
GAGTGGTGTGAAAAGTGAGA+GGG | + | chr3_4:76047342-76047361 | None:intergenic | 45.0% | |
AGAGTGGTGTGAAAAGTGAG+AGG | + | chr3_4:76047343-76047362 | None:intergenic | 45.0% | |
ACTCCAAAAAGCTGCTCAAG+TGG | - | chr3_4:76047448-76047467 | Msa0522740:CDS | 45.0% | |
CTCCAAAAAGCTGCTCAAGT+GGG | - | chr3_4:76047449-76047468 | Msa0522740:CDS | 45.0% | |
! | AACCCACTTGAGCAGCTTTT+TGG | + | chr3_4:76047454-76047473 | None:intergenic | 45.0% |
AGCCTGTGGCAGATTATCTT+GGG | - | chr3_4:76047591-76047610 | Msa0522740:intron | 45.0% | |
TGCTAAGACCGAGAAGATCA+CGG | + | chr3_4:76047670-76047689 | None:intergenic | 45.0% | |
TGATCTTCTCGGTCTTAGCA+TGG | - | chr3_4:76047670-76047689 | Msa0522740:intron | 45.0% | |
GATCTTCTCGGTCTTAGCAT+GGG | - | chr3_4:76047671-76047690 | Msa0522740:intron | 45.0% | |
! | GCTTTGCTCACATCTTTTGG+AGG | - | chr3_4:76047722-76047741 | Msa0522740:CDS | 45.0% |
GTACTGTGTACACAACGAGG+CGG | + | chr3_4:76044065-76044084 | None:intergenic | 50.0% | |
GGTGTACTGTGTACACAACG+AGG | + | chr3_4:76044068-76044087 | None:intergenic | 50.0% | |
!!! | CGCTTCTTTTTTGACGGTGG+CGG | + | chr3_4:76044193-76044212 | None:intergenic | 50.0% |
TCAGCGTCTGGATCTGCAAA+CGG | + | chr3_4:76044401-76044420 | None:intergenic | 50.0% | |
GTTGGAGATTCTGTTCCCGT+TGG | + | chr3_4:76044496-76044515 | None:intergenic | 50.0% | |
TGAAGGATTGTGGTGAACGC+AGG | + | chr3_4:76044612-76044631 | None:intergenic | 50.0% | |
CGAGTGCTCTTGAAGGATTG+TGG | + | chr3_4:76044622-76044641 | None:intergenic | 50.0% | |
CAGAAGGTTCTGCGATGGAA+TGG | - | chr3_4:76044922-76044941 | Msa0522740:intron | 50.0% | |
GGTGAATGAGAGTTGGAAGG+AGG | - | chr3_4:76044943-76044962 | Msa0522740:intron | 50.0% | |
AATGAGAGTTGGAAGGAGGG+TGG | - | chr3_4:76044947-76044966 | Msa0522740:intron | 50.0% | |
TAGCAATAACGCTGTTGCCG+TGG | - | chr3_4:76044973-76044992 | Msa0522740:intron | 50.0% | |
GTAGCCGGTGAAGAAGAAGA+AGG | + | chr3_4:76045001-76045020 | None:intergenic | 50.0% | |
TTGTCGTCTACTCAGTGCTC+AGG | - | chr3_4:76045070-76045089 | Msa0522740:intron | 50.0% | |
! | AAAGGCGGGTTTGAGATACC+AGG | + | chr3_4:76045145-76045164 | None:intergenic | 50.0% |
TGGGCTGCATTACTACTCAG+CGG | + | chr3_4:76045774-76045793 | None:intergenic | 50.0% | |
TCCCATTGTCATCGTGTGAG+AGG | + | chr3_4:76045807-76045826 | None:intergenic | 50.0% | |
TGGGACAGTGTGAGTCTTTG+TGG | - | chr3_4:76045822-76045841 | Msa0522740:intron | 50.0% | |
GGGACAGTGTGAGTCTTTGT+GGG | - | chr3_4:76045823-76045842 | Msa0522740:intron | 50.0% | |
CAGTGTGAGTCTTTGTGGGA+AGG | - | chr3_4:76045827-76045846 | Msa0522740:intron | 50.0% | |
TGGTTCCCTTAACGAGTGTC+CGG | + | chr3_4:76046718-76046737 | None:intergenic | 50.0% | |
GTTTCCTTAACTAGTGCCCG+GGG | - | chr3_4:76046825-76046844 | Msa0522740:intron | 50.0% | |
GGGAAAAAAGCTTGGGAGTG+GGG | + | chr3_4:76046995-76047014 | None:intergenic | 50.0% | |
GGGGAAAAAAGCTTGGGAGT+GGG | + | chr3_4:76046996-76047015 | None:intergenic | 50.0% | |
GATGTGGGGATATCTGAGTG+AGG | + | chr3_4:76047296-76047315 | None:intergenic | 50.0% | |
AGCACGAAGCAAGGATGCAT+TGG | + | chr3_4:76047486-76047505 | None:intergenic | 50.0% | |
GCATCCTTGCTTCGTGCTTT+AGG | - | chr3_4:76047488-76047507 | Msa0522740:CDS | 50.0% | |
CAAGCCTAAAGCACGAAGCA+AGG | + | chr3_4:76047495-76047514 | None:intergenic | 50.0% | |
GCAGCACCACAACAGATCAA+TGG | - | chr3_4:76047537-76047556 | Msa0522740:intron | 50.0% | |
GAGCCTGTGGCAGATTATCT+TGG | - | chr3_4:76047590-76047609 | Msa0522740:intron | 50.0% | |
AGCCCAAGATAATCTGCCAC+AGG | + | chr3_4:76047596-76047615 | None:intergenic | 50.0% | |
GTGGCAGATTATCTTGGGCT+TGG | - | chr3_4:76047596-76047615 | Msa0522740:intron | 50.0% | |
ACTTCCCTGTGGGAATGAGA+CGG | - | chr3_4:76047619-76047638 | Msa0522740:intron | 50.0% | |
GCTAAGACCGAGAAGATCAC+GGG | + | chr3_4:76047669-76047688 | None:intergenic | 50.0% | |
TCTCGGTCTTAGCATGGGAT+TGG | - | chr3_4:76047676-76047695 | Msa0522740:intron | 50.0% | |
CTCGGTCTTAGCATGGGATT+GGG | - | chr3_4:76047677-76047696 | Msa0522740:intron | 50.0% | |
TAGCATGGGATTGGGTAGAG+AGG | - | chr3_4:76047685-76047704 | Msa0522740:intron | 50.0% | |
ATACACCTGGCATTCCAGGG+AGG | + | chr3_4:76044219-76044238 | None:intergenic | 55.0% | |
AATCTCCAACTTCACCGGCG+AGG | - | chr3_4:76044506-76044525 | Msa0522740:CDS | 55.0% | |
ACAACATGCCGTGGAAGCTC+CGG | - | chr3_4:76044531-76044550 | Msa0522740:CDS | 55.0% | |
GGATTGTGGTGAACGCAGGA+AGG | + | chr3_4:76044608-76044627 | None:intergenic | 55.0% | |
AGGTCACCGAGTGCTCTTGA+AGG | + | chr3_4:76044629-76044648 | None:intergenic | 55.0% | |
ACGCACAGAAGGTTCTGCGA+TGG | - | chr3_4:76044917-76044936 | Msa0522740:intron | 55.0% | |
TTCCCTTAACGAGTGTCCGG+GGG | + | chr3_4:76046715-76046734 | None:intergenic | 55.0% | |
GTTCCCTTAACGAGTGTCCG+GGG | + | chr3_4:76046716-76046735 | None:intergenic | 55.0% | |
GGTTCCCTTAACGAGTGTCC+GGG | + | chr3_4:76046717-76046736 | None:intergenic | 55.0% | |
AATGCCCCGGGCACTAGTTA+AGG | + | chr3_4:76046832-76046851 | None:intergenic | 55.0% | |
GGGGGAAAAAAGCTTGGGAG+TGG | + | chr3_4:76046997-76047016 | None:intergenic | 55.0% | |
!! | ATGGCGGTGACAGCCTTGTT+GGG | + | chr3_4:76047205-76047224 | None:intergenic | 55.0% |
TTGGGCTTGGACTTCCCTGT+GGG | - | chr3_4:76047609-76047628 | Msa0522740:intron | 55.0% | |
CTTCCCTGTGGGAATGAGAC+GGG | - | chr3_4:76047620-76047639 | Msa0522740:intron | 55.0% | |
TTCCCTGTGGGAATGAGACG+GGG | - | chr3_4:76047621-76047640 | Msa0522740:intron | 55.0% | |
CCGAGAAGATCACGGGTCAT+GGG | + | chr3_4:76047662-76047681 | None:intergenic | 55.0% | |
CCCATGACCCGTGATCTTCT+CGG | - | chr3_4:76047659-76047678 | Msa0522740:intron | 55.0% | |
ACCGAGAAGATCACGGGTCA+TGG | + | chr3_4:76047663-76047682 | None:intergenic | 55.0% | |
CTGTGTACACAACGAGGCGG+CGG | + | chr3_4:76044062-76044081 | None:intergenic | 60.0% | |
CGAAACCTCCCTGGAATGCC+AGG | - | chr3_4:76044211-76044230 | Msa0522740:CDS | 60.0% | |
TGTGTCCTCGCCGGTGAAGT+TGG | + | chr3_4:76044514-76044533 | None:intergenic | 60.0% | |
ACGGCATGTTGTGTCCTCGC+CGG | + | chr3_4:76044523-76044542 | None:intergenic | 60.0% | |
TTTCGTCGTTCGCTCGCTGC+CGG | + | chr3_4:76044553-76044572 | None:intergenic | 60.0% | |
TGGTGAACGCAGGAAGGCTC+AGG | + | chr3_4:76044602-76044621 | None:intergenic | 60.0% | |
! | AGAGCACTCGGTGACCTCAC+AGG | - | chr3_4:76044632-76044651 | Msa0522740:CDS | 60.0% |
TGCCCCCGGACACTCGTTAA+GGG | - | chr3_4:76046710-76046729 | Msa0522740:intron | 60.0% | |
! | CATGGCGGTGACAGCCTTGT+TGG | + | chr3_4:76047206-76047225 | None:intergenic | 60.0% |
CTTGGGCTTGGACTTCCCTG+TGG | - | chr3_4:76047608-76047627 | Msa0522740:intron | 60.0% | |
TCCCTGTGGGAATGAGACGG+GGG | - | chr3_4:76047622-76047641 | Msa0522740:intron | 60.0% | |
GAAGATCACGGGTCATGGGC+TGG | + | chr3_4:76047658-76047677 | None:intergenic | 60.0% | |
! | TAGTTGTACTGGCCCACCCC+AGG | - | chr3_4:76047794-76047813 | Msa0522740:five_prime_UTR | 60.0% |
GGCGAGGACACAACATGCCG+TGG | - | chr3_4:76044522-76044541 | Msa0522740:CDS | 65.0% | |
! | GGAGTGAGTGGTGGCGTAGC+CGG | + | chr3_4:76045016-76045035 | None:intergenic | 65.0% |
GTGCCCCCGGACACTCGTTA+AGG | - | chr3_4:76046709-76046728 | Msa0522740:intron | 65.0% | |
CCCCCCGTCTCATTCCCACA+GGG | + | chr3_4:76047626-76047645 | None:intergenic | 65.0% | |
CCCTGTGGGAATGAGACGGG+GGG | - | chr3_4:76047623-76047642 | Msa0522740:intron | 65.0% | |
GCTCGCTGCCGGAGCTTCCA+CGG | + | chr3_4:76044542-76044561 | None:intergenic | 70.0% | |
GCCCCCCGTCTCATTCCCAC+AGG | + | chr3_4:76047627-76047646 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 76043949 | 76047971 | 76043949 | ID=Msa0522740;Name=Msa0522740 |
chr3_4 | mRNA | 76043949 | 76047971 | 76043949 | ID=Msa0522740-mRNA-1;Parent=Msa0522740;Name=Msa0522740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=190|1|1|1|1|1|4|205|420 |
chr3_4 | exon | 76043949 | 76044731 | 76043949 | ID=Msa0522740-mRNA-1:exon:21861;Parent=Msa0522740-mRNA-1 |
chr3_4 | exon | 76046829 | 76047019 | 76046829 | ID=Msa0522740-mRNA-1:exon:21860;Parent=Msa0522740-mRNA-1 |
chr3_4 | exon | 76047113 | 76047512 | 76047113 | ID=Msa0522740-mRNA-1:exon:21859;Parent=Msa0522740-mRNA-1 |
chr3_4 | exon | 76047688 | 76047971 | 76047688 | ID=Msa0522740-mRNA-1:exon:21858;Parent=Msa0522740-mRNA-1 |
chr3_4 | five_prime_UTR | 76047782 | 76047971 | 76047782 | ID=Msa0522740-mRNA-1:five_prime_utr;Parent=Msa0522740-mRNA-1 |
chr3_4 | CDS | 76047688 | 76047781 | 76047688 | ID=Msa0522740-mRNA-1:cds;Parent=Msa0522740-mRNA-1 |
chr3_4 | CDS | 76047113 | 76047512 | 76047113 | ID=Msa0522740-mRNA-1:cds;Parent=Msa0522740-mRNA-1 |
chr3_4 | CDS | 76046829 | 76047019 | 76046829 | ID=Msa0522740-mRNA-1:cds;Parent=Msa0522740-mRNA-1 |
chr3_4 | CDS | 76044154 | 76044731 | 76044154 | ID=Msa0522740-mRNA-1:cds;Parent=Msa0522740-mRNA-1 |
chr3_4 | three_prime_UTR | 76043949 | 76044153 | 76043949 | ID=Msa0522740-mRNA-1:three_prime_utr;Parent=Msa0522740-mRNA-1 |
Gene Sequence |
Protein sequence |