AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0522740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522740 MtrunA17_Chr3g0141431 92.086 417 25 4 1 417 1 409 0.0 717
Msa0522740 MtrunA17_Chr8g0373541 48.380 432 147 10 15 380 26 447 1.11e-116 350
Msa0522740 MtrunA17_Chr4g0040571 45.050 404 135 11 9 338 26 416 1.36e-105 321
Msa0522740 MtrunA17_Chr1g0185121 51.703 323 127 7 15 330 33 333 3.37e-104 316
Msa0522740 MtrunA17_Chr4g0029521 47.059 357 154 8 18 361 34 368 1.68e-102 313
Msa0522740 MtrunA17_Chr1g0191991 54.890 317 113 8 19 328 60 353 3.53e-102 313
Msa0522740 MtrunA17_Chr1g0181381 78.916 166 35 0 18 183 34 199 1.25e-101 311
Msa0522740 MtrunA17_Chr2g0330171 50.592 338 125 9 20 350 44 346 1.83e-101 310
Msa0522740 MtrunA17_Chr8g0342421 73.770 183 45 2 16 198 56 235 7.43e-100 307
Msa0522740 MtrunA17_Chr7g0263941 50.459 327 105 8 18 332 30 311 1.14e-98 300
Msa0522740 MtrunA17_Chr1g0162971 43.210 405 178 12 22 391 41 428 1.76e-97 298
Msa0522740 MtrunA17_Chr1g0199101 76.829 164 37 1 20 183 45 207 8.13e-97 300
Msa0522740 MtrunA17_Chr1g0151351 75.758 165 40 0 19 183 38 202 2.30e-96 296
Msa0522740 MtrunA17_Chr7g0268961 52.201 318 103 9 32 329 32 320 9.14e-96 295
Msa0522740 MtrunA17_Chr1g0163001 73.494 166 43 1 20 185 41 205 9.76e-94 291
Msa0522740 MtrunA17_Chr2g0326381 72.892 166 45 0 22 187 32 197 9.26e-93 285
Msa0522740 MtrunA17_Chr1g0210821 74.684 158 39 1 25 182 47 203 2.72e-91 286
Msa0522740 MtrunA17_Chr2g0324991 78.788 132 27 1 33 164 3 133 3.76e-77 236
Msa0522740 MtrunA17_Chr6g0479921 45.018 271 137 6 17 284 24 285 3.43e-69 226
Msa0522740 MtrunA17_Chr8g0375521 59.615 156 62 1 22 176 27 182 8.05e-69 224
Msa0522740 MtrunA17_Chr3g0123941 37.107 159 93 3 27 178 113 271 1.76e-24 103
Msa0522740 MtrunA17_Chr1g0200421 35.714 154 88 3 36 178 236 389 7.58e-24 103
Msa0522740 MtrunA17_Chr2g0320341 33.548 155 90 3 31 172 224 378 1.13e-23 102
Msa0522740 MtrunA17_Chr8g0382121 35.526 152 87 5 35 175 109 260 5.26e-20 90.1
Msa0522740 MtrunA17_Chr5g0422571 33.728 169 102 5 19 178 82 249 9.58e-20 89.0
Msa0522740 MtrunA17_Chr8g0352011 34.783 138 80 4 43 172 171 306 1.20e-17 83.6
Msa0522740 MtrunA17_Chr7g0258011 32.484 157 87 5 43 182 181 335 1.33e-17 83.6
Msa0522740 MtrunA17_Chr2g0328921 31.928 166 95 5 15 172 123 278 1.49e-17 83.2
Msa0522740 MtrunA17_Chr4g0026521 34.532 139 83 3 43 174 123 260 1.54e-17 82.8
Msa0522740 MtrunA17_Chr1g0173841 33.571 140 83 4 43 174 220 357 4.99e-17 82.4
Msa0522740 MtrunA17_Chr1g0198651 30.769 143 86 4 43 174 107 247 8.90e-17 80.5
Msa0522740 MtrunA17_Chr4g0053341 31.293 147 93 3 33 172 69 214 1.49e-16 78.6
Msa0522740 MtrunA17_Chr2g0321291 33.813 139 84 3 43 174 138 275 3.31e-16 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522740 AT3G50700.1 48.000 400 195 6 22 414 34 427 7.70e-111 333
Msa0522740 AT3G13810.6 75.152 165 41 0 22 186 51 215 1.35e-97 301
Msa0522740 AT3G13810.4 75.152 165 41 0 22 186 70 234 2.03e-97 301
Msa0522740 AT3G13810.1 75.152 165 41 0 22 186 70 234 2.03e-97 301
Msa0522740 AT3G13810.5 75.152 165 41 0 22 186 65 229 2.34e-97 300
Msa0522740 AT1G03840.1 74.556 169 42 1 15 183 34 201 3.32e-97 300
Msa0522740 AT1G55110.3 76.543 162 38 0 22 183 63 224 1.25e-96 297
Msa0522740 AT1G55110.1 76.543 162 38 0 22 183 63 224 1.25e-96 297
Msa0522740 AT1G55110.2 76.543 162 38 0 22 183 63 224 1.25e-96 297
Msa0522740 AT1G14580.1 70.760 171 49 1 15 185 46 215 1.06e-95 295
Msa0522740 AT1G14580.2 70.760 171 49 1 15 185 46 215 1.06e-95 295
Msa0522740 AT4G02670.2 77.160 162 37 0 22 183 55 216 1.47e-95 293
Msa0522740 AT4G02670.1 77.160 162 37 0 22 183 53 214 1.49e-95 292
Msa0522740 AT5G03150.1 64.851 202 64 1 21 222 52 246 1.58e-95 296
Msa0522740 AT1G14580.3 70.760 171 49 1 15 185 60 229 1.92e-95 295
Msa0522740 AT2G02080.1 70.175 171 49 2 15 185 48 216 2.42e-94 293
Msa0522740 AT2G02080.4 70.175 171 49 2 15 185 48 216 2.42e-94 293
Msa0522740 AT2G02080.5 70.175 171 49 2 15 185 48 216 2.42e-94 293
Msa0522740 AT2G02080.3 70.175 171 49 2 15 185 48 216 2.42e-94 293
Msa0522740 AT1G03840.2 73.373 169 42 2 15 183 34 199 6.23e-94 291
Msa0522740 AT5G60470.3 63.768 207 66 3 2 203 24 226 1.26e-93 289
Msa0522740 AT5G60470.2 63.768 207 66 3 2 203 28 230 1.33e-93 289
Msa0522740 AT5G44160.1 62.745 204 71 3 18 220 33 232 2.37e-93 289
Msa0522740 AT3G45260.2 73.620 163 43 0 21 183 38 200 4.20e-93 288
Msa0522740 AT3G45260.1 73.620 163 43 0 21 183 38 200 4.20e-93 288
Msa0522740 AT3G13810.3 75.325 154 38 0 33 186 68 221 5.11e-91 284
Msa0522740 AT3G13810.2 75.325 154 38 0 33 186 82 235 7.26e-91 284
Msa0522740 AT2G02070.2 72.121 165 45 1 22 186 52 215 1.93e-90 285
Msa0522740 AT2G02070.1 72.121 165 45 1 22 186 52 215 1.93e-90 285
Msa0522740 AT5G60470.1 59.330 209 74 3 6 203 13 221 1.26e-86 271
Msa0522740 AT5G44160.2 61.579 190 68 3 32 220 8 193 2.01e-85 267
Msa0522740 AT2G02080.6 69.286 140 42 1 46 185 1 139 1.14e-77 248
Msa0522740 AT2G02080.2 69.286 140 42 1 46 185 1 139 1.14e-77 248
Msa0522740 AT1G68130.1 60.248 161 63 1 17 176 36 196 7.72e-71 229
Msa0522740 AT2G01940.1 59.394 165 66 1 15 178 37 201 1.03e-70 229
Msa0522740 AT1G25250.3 61.146 157 59 2 22 176 33 189 2.22e-69 224
Msa0522740 AT2G01940.3 57.831 166 68 2 15 178 37 202 1.53e-66 219
Msa0522740 AT1G25250.1 61.074 149 56 2 30 176 18 166 3.62e-66 215
Msa0522740 AT5G66730.1 40.302 464 184 21 22 411 32 476 1.16e-64 215
Msa0522740 AT1G68130.2 60.000 110 43 1 68 176 1 110 3.30e-44 157
Msa0522740 AT2G01940.2 58.036 112 46 1 68 178 1 112 2.66e-43 155
Msa0522740 AT1G25250.2 58.559 111 44 2 68 176 1 111 4.25e-42 150
Msa0522740 AT5G22890.1 33.708 178 103 4 16 180 184 359 8.10e-24 102
Msa0522740 AT1G34370.3 35.256 156 88 3 30 172 13 168 3.39e-23 99.0
Msa0522740 AT1G34370.2 34.568 162 93 3 30 178 223 384 5.78e-23 101
Msa0522740 AT1G34370.1 34.568 162 93 3 30 178 223 384 5.78e-23 101
Msa0522740 AT1G13290.1 32.787 183 106 8 12 178 56 237 2.31e-18 85.5
Msa0522740 AT1G51220.1 33.333 147 87 5 43 180 170 314 1.69e-17 83.6
Msa0522740 AT3G20880.1 34.014 147 86 5 43 180 248 392 2.46e-17 84.0
Msa0522740 AT3G57670.1 33.333 138 82 4 43 172 209 344 1.01e-16 81.6
Msa0522740 AT1G08290.1 33.721 172 92 7 22 174 142 310 1.43e-16 80.9
Msa0522740 AT1G34790.1 33.793 145 88 3 35 172 129 272 1.41e-15 77.4

Find 119 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTTGTTCTATATTCTT+TGG 0.186815 3_4:-76044005 Msa0522740:three_prime_UTR
TCTGCTTTGCTCACATCTTT+TGG 0.214858 3_4:-76044179 Msa0522740:CDS
GTGATCATTGTTGTTGTTAT+TGG 0.219266 3_4:+76044529 None:intergenic
GCATCCTTGCTTCGTGCTTT+AGG 0.267894 3_4:-76044410 Msa0522740:CDS
GTTGGTTGCTAGTAAAGTTT+TGG 0.275277 3_4:+76047460 None:intergenic
CTAACACAGGGATCAAGTTT+TGG 0.328062 3_4:+76047799 None:intergenic
TTATATACACCTGGCATTCC+AGG 0.339087 3_4:+76047678 None:intergenic
ATCGAATCAATATCATTTAC+TGG 0.347905 3_4:+76043967 None:intergenic
TAGACAAGAGTTTAGAAAAC+TGG 0.354434 3_4:-76044134 Msa0522740:three_prime_UTR
CCCATGACCCGTGATCTTCT+CGG 0.362988 3_4:-76044239 Msa0522740:CDS
GTGGCAGATTATCTTGGGCT+TGG 0.371694 3_4:-76044302 Msa0522740:CDS
TGATATGATGAGGAGTATAT+TGG 0.381830 3_4:+76047931 None:intergenic
TCTCGGTCTTAGCATGGGAT+TGG 0.395080 3_4:-76044222 Msa0522740:CDS
GAGCCTGTGGCAGATTATCT+TGG 0.397193 3_4:-76044308 Msa0522740:CDS
CTTCCCTGTGGGAATGAGAC+GGG 0.408229 3_4:-76044278 Msa0522740:CDS
GAAAGCACGGTGAGAAGAAA+TGG 0.413209 3_4:-76047223 Msa0522740:CDS
CCTCATCATATCATACTCAT+TGG 0.418232 3_4:-76047921 Msa0522740:five_prime_UTR
ATCACTGATGATATTGTTGA+TGG 0.423893 3_4:+76046864 None:intergenic
TTCTAAACTCTTGTCTATGC+AGG 0.423930 3_4:+76044140 None:intergenic
CATGGCGGTGACAGCCTTGT+TGG 0.441434 3_4:+76044695 None:intergenic
GGTTCCTTCTTCTTCTTCAC+CGG 0.442532 3_4:-76046904 Msa0522740:CDS
ATGGCGGTGACAGCCTTGTT+GGG 0.445830 3_4:+76044696 None:intergenic
CTCGGTCTTAGCATGGGATT+GGG 0.446112 3_4:-76044221 Msa0522740:CDS
TTTCGTCGTTCGCTCGCTGC+CGG 0.456453 3_4:+76047348 None:intergenic
AAAGCGATTACTTCAGCGTC+TGG 0.457409 3_4:+76047488 None:intergenic
AGCCTGTGGCAGATTATCTT+GGG 0.461391 3_4:-76044307 Msa0522740:CDS
ACCGAGAAGATCACGGGTCA+TGG 0.464536 3_4:+76044238 None:intergenic
CGAAACCTCCCTGGAATGCC+AGG 0.466668 3_4:-76047687 Msa0522740:intron
ACAACATGCCGTGGAAGCTC+CGG 0.473951 3_4:-76047367 Msa0522740:CDS
GGAGTGAGTGGTGGCGTAGC+CGG 0.477319 3_4:+76046885 None:intergenic
TGTGAAAAGTGAGAGGGTTG+TGG 0.480243 3_4:+76044565 None:intergenic
AGCACGAAGCAAGGATGCAT+TGG 0.486996 3_4:+76044415 None:intergenic
TGATCTTCTCGGTCTTAGCA+TGG 0.494778 3_4:-76044228 Msa0522740:CDS
CTGGAAACAACTAGTTGTAC+TGG 0.499057 3_4:-76044115 Msa0522740:three_prime_UTR
GTGAAAAGTGAGAGGGTTGT+GGG 0.501902 3_4:+76044566 None:intergenic
TTCCCTGTGGGAATGAGACG+GGG 0.506510 3_4:-76044277 Msa0522740:CDS
TGGTGAACGCAGGAAGGCTC+AGG 0.513816 3_4:+76047299 None:intergenic
TACAGATCTCGCATATGAAA+CGG 0.517803 3_4:+76047438 None:intergenic
GATCTTCTCGGTCTTAGCAT+GGG 0.522076 3_4:-76044227 Msa0522740:CDS
GTTATTCCATTGATCTGTTG+TGG 0.526630 3_4:+76044355 None:intergenic
GAAGATCACGGGTCATGGGC+TGG 0.528136 3_4:+76044243 None:intergenic
TTGTTATTGGAGAGATAGAG+TGG 0.529493 3_4:+76044542 None:intergenic
CTGTAACAAAGGATTCCAAC+GGG 0.530824 3_4:-76047420 Msa0522740:CDS
GTTATTGTTATTGCTAACAC+AGG 0.531187 3_4:+76047786 None:intergenic
AGAATATAGAACAAGAGAGT+TGG 0.531503 3_4:+76044009 None:intergenic
ATATGCGAGATCTGTAACAA+AGG 0.533818 3_4:-76047431 Msa0522740:CDS
CAGAAGGTTCTGCGATGGAA+TGG 0.534515 3_4:-76046976 Msa0522740:CDS
TGTGTCCTCGCCGGTGAAGT+TGG 0.538471 3_4:+76047387 None:intergenic
GCTCGCTGCCGGAGCTTCCA+CGG 0.538801 3_4:+76047359 None:intergenic
TATATACACCTGGCATTCCA+GGG 0.541617 3_4:+76047679 None:intergenic
CCGAGAAGATCACGGGTCAT+GGG 0.542667 3_4:+76044239 None:intergenic
AATGCAGTAGCAGATAATAC+AGG 0.542965 3_4:+76044473 None:intergenic
TTGGGCTTGGACTTCCCTGT+GGG 0.543392 3_4:-76044289 Msa0522740:CDS
ACTTCCCTGTGGGAATGAGA+CGG 0.547067 3_4:-76044279 Msa0522740:CDS
TTGTCGTCTACTCAGTGCTC+AGG 0.547564 3_4:-76046828 Msa0522740:intron
GCAGCACCACAACAGATCAA+TGG 0.551093 3_4:-76044361 Msa0522740:CDS
TGAGGAGTATATTGGACAAG+AGG 0.551363 3_4:+76047939 None:intergenic
GTAGCAGATAATACAGGTTG+TGG 0.552729 3_4:+76044479 None:intergenic
GTTGGAGATTCTGTTCCCGT+TGG 0.557245 3_4:+76047405 None:intergenic
AGGTCACCGAGTGCTCTTGA+AGG 0.557256 3_4:+76047272 None:intergenic
GTGAATGAGAGTTGGAAGGA+GGG 0.557913 3_4:-76046954 Msa0522740:CDS
TAGTTGTACTGGCCCACCCC+AGG 0.558567 3_4:-76044104 Msa0522740:three_prime_UTR
CTTGGGCTTGGACTTCCCTG+TGG 0.559790 3_4:-76044290 Msa0522740:CDS
CACAATCCTTCAAGAGCACT+CGG 0.561083 3_4:-76047278 Msa0522740:CDS
AGAGTGGTGTGAAAAGTGAG+AGG 0.562539 3_4:+76044558 None:intergenic
AACAGAATCTCCAACTTCAC+CGG 0.564489 3_4:-76047397 Msa0522740:CDS
ACGGCATGTTGTGTCCTCGC+CGG 0.565267 3_4:+76047378 None:intergenic
TCCCTGTGGGAATGAGACGG+GGG 0.566052 3_4:-76044276 Msa0522740:CDS
AGAGAGTATAAATGTGATTG+TGG 0.571517 3_4:-76047128 Msa0522740:CDS
ATGGAATGGTGAATGAGAGT+TGG 0.571967 3_4:-76046962 Msa0522740:CDS
GAAGTAGAAGCGTTTGAACA+TGG 0.574940 3_4:+76044677 None:intergenic
ATCAACAATATCATCAGTGA+TGG 0.575729 3_4:-76046862 Msa0522740:CDS
AGAGCACTCGGTGACCTCAC+AGG 0.584571 3_4:-76047266 Msa0522740:CDS
AATGAGAGTTGGAAGGAGGG+TGG 0.585791 3_4:-76046951 Msa0522740:CDS
AGCCCAAGATAATCTGCCAC+AGG 0.587033 3_4:+76044305 None:intergenic
CTGTGTACACAACGAGGCGG+CGG 0.589206 3_4:+76047839 None:intergenic
GCTAAGACCGAGAAGATCAC+GGG 0.592165 3_4:+76044232 None:intergenic
TCTGTGATAGAGAAAGATGT+GGG 0.592327 3_4:+76044590 None:intergenic
GGCGAGGACACAACATGCCG+TGG 0.596259 3_4:-76047376 Msa0522740:CDS
CAAGCCTAAAGCACGAAGCA+AGG 0.596303 3_4:+76044406 None:intergenic
TGCTAAGACCGAGAAGATCA+CGG 0.597202 3_4:+76044231 None:intergenic
CCAATGAGTATGATATGATG+AGG 0.598194 3_4:+76047921 None:intergenic
TGAAGGATTGTGGTGAACGC+AGG 0.600303 3_4:+76047289 None:intergenic
GGTGAATGAGAGTTGGAAGG+AGG 0.600831 3_4:-76046955 Msa0522740:CDS
AAAGTTCATATGAAGAACTG+TGG 0.604717 3_4:-76047155 Msa0522740:CDS
GGACAAATACTTACGAGAGA+AGG 0.614248 3_4:+76047860 None:intergenic
GATATTGTTGATGGAGTGAG+TGG 0.614576 3_4:+76046873 None:intergenic
GACAAACGTACACTTTCTTG+CGG 0.615008 3_4:+76047321 None:intergenic
TAGCAATAACGCTGTTGCCG+TGG 0.616354 3_4:-76046925 Msa0522740:CDS
ATTGTTGATGGAGTGAGTGG+TGG 0.622386 3_4:+76046876 None:intergenic
CCCTGTGGGAATGAGACGGG+GGG 0.624937 3_4:-76044275 Msa0522740:CDS
ATACTTACGAGAGAAGGAAG+AGG 0.628144 3_4:+76047866 None:intergenic
AAACGTACACTTTCTTGCGG+AGG 0.628231 3_4:+76047324 None:intergenic
TCTGTAACAAAGGATTCCAA+CGG 0.628991 3_4:-76047421 Msa0522740:CDS
GGATTGTGGTGAACGCAGGA+AGG 0.629061 3_4:+76047293 None:intergenic
CACTGAGTAGACGACAAAGT+AGG 0.633598 3_4:+76046834 None:intergenic
TTATTGTTATTGCTAACACA+GGG 0.635591 3_4:+76047787 None:intergenic
GATCTCGCATATGAAACGGT+TGG 0.639364 3_4:+76047442 None:intergenic
TACTTACGAGAGAAGGAAGA+GGG 0.639493 3_4:+76047867 None:intergenic
ACGCACAGAAGGTTCTGCGA+TGG 0.641919 3_4:-76046981 Msa0522740:CDS
GGTGTAGTAGAAAGTGCCAT+TGG 0.644739 3_4:+76047729 None:intergenic
TAGCATGGGATTGGGTAGAG+AGG 0.647406 3_4:-76044213 Msa0522740:CDS
GAGTGGTGTGAAAAGTGAGA+GGG 0.666933 3_4:+76044559 None:intergenic
ACATTGCAGAAAACCCAACA+AGG 0.670424 3_4:-76044709 Msa0522740:CDS
GTAGCCGGTGAAGAAGAAGA+AGG 0.672927 3_4:+76046900 None:intergenic
TGAAGAAGAAGAAGGAACCA+CGG 0.676573 3_4:+76046908 None:intergenic
GTAGTAGAAAGTGCCATTGG+TGG 0.678545 3_4:+76047732 None:intergenic
AATGGTGAATGAGAGTTGGA+AGG 0.679457 3_4:-76046958 Msa0522740:CDS
CGAGTGCTCTTGAAGGATTG+TGG 0.681807 3_4:+76047279 None:intergenic
ACAGATCAATGGAATAACCA+TGG 0.682178 3_4:-76044350 Msa0522740:CDS
TTCTGTGATAGAGAAAGATG+TGG 0.682251 3_4:+76044589 None:intergenic
CTGTGATAGAGAAAGATGTG+GGG 0.685180 3_4:+76044591 None:intergenic
AATCTCCAACTTCACCGGCG+AGG 0.689245 3_4:-76047392 Msa0522740:CDS
AAAACAAGAGAATGAGCCTG+TGG 0.695424 3_4:-76044321 Msa0522740:CDS
GATGTGGGGATATCTGAGTG+AGG 0.723861 3_4:+76044605 None:intergenic
ATACACCTGGCATTCCAGGG+AGG 0.741719 3_4:+76047682 None:intergenic
GTAGAAGCGTTTGAACATGG+CGG 0.760919 3_4:+76044680 None:intergenic
GTACTGTGTACACAACGAGG+CGG 0.772511 3_4:+76047836 None:intergenic
GGTGTACTGTGTACACAACG+AGG 0.805771 3_4:+76047833 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATTTATTTATATAATAG+TGG + chr3_4:76044254-76044273 None:intergenic 10.0%
!!! TTATTTGTTTATTTGTTAAT+AGG - chr3_4:76044879-76044898 Msa0522740:intron 10.0%
!!! ATTAAATTTATTGTTTTTTG+TGG + chr3_4:76045231-76045250 None:intergenic 10.0%
!!! AAAAAAATTGTTATTTTGAT+AGG - chr3_4:76045323-76045342 Msa0522740:intron 10.0%
!! ATAATAAATTCCTTATTATT+TGG - chr3_4:76045663-76045682 Msa0522740:intron 10.0%
!!! AGTTTTTTTTTTATTAAGAA+AGG - chr3_4:76045864-76045883 Msa0522740:intron 10.0%
!! AGATAAAATAATATGACAAA+TGG + chr3_4:76045369-76045388 None:intergenic 15.0%
!!! TTTGTCATATTATTTTATCT+AGG - chr3_4:76045369-76045388 Msa0522740:intron 15.0%
!! ACAAAACTGTAAATATTTAT+AGG - chr3_4:76045599-76045618 Msa0522740:intron 15.0%
!! CAAAACTGTAAATATTTATA+GGG - chr3_4:76045600-76045619 Msa0522740:intron 15.0%
!! CAGATAAAATAAATAGTATT+TGG - chr3_4:76045920-76045939 Msa0522740:intron 15.0%
!! ATAAAATAAATAGTATTTGG+TGG - chr3_4:76045923-76045942 Msa0522740:intron 15.0%
!!! CTTAAAGAAATTTTTTACTA+TGG + chr3_4:76046064-76046083 None:intergenic 15.0%
!!! ATAATTTTGAGACAAATTTT+TGG + chr3_4:76046212-76046231 None:intergenic 15.0%
!!! CAAATATCATTTTTATTTAC+AGG - chr3_4:76046236-76046255 Msa0522740:intron 15.0%
!! CATACTTTAATGTTATTATA+AGG - chr3_4:76046673-76046692 Msa0522740:intron 15.0%
!!! TTTTTTAAATTTTCTCAATC+AGG - chr3_4:76047063-76047082 Msa0522740:intron 15.0%
!! GATATTTATTTATATACACC+TGG + chr3_4:76044232-76044251 None:intergenic 20.0%
!!! TTTTGAGAGATAATTAAAGA+TGG + chr3_4:76044824-76044843 None:intergenic 20.0%
!!! TTGTTTATTTGTTAATAGGA+AGG - chr3_4:76044883-76044902 Msa0522740:intron 20.0%
!! TAGTAATTCATTTCCTATTT+GGG - chr3_4:76045103-76045122 Msa0522740:intron 20.0%
!!! TTGTTTTTTGTGGAAAATTA+AGG + chr3_4:76045221-76045240 None:intergenic 20.0%
!!! TCATTTGTTCTTTTTAATTG+TGG - chr3_4:76045268-76045287 Msa0522740:intron 20.0%
!!! TCTTTTTAATTGTGGTATTA+AGG - chr3_4:76045276-76045295 Msa0522740:intron 20.0%
!! CAAAACTGTGAATATTTATA+GGG + chr3_4:76045412-76045431 None:intergenic 20.0%
!! ACAAAACTGTGAATATTTAT+AGG + chr3_4:76045413-76045432 None:intergenic 20.0%
!! TGCTGATGAAAAAATTTATA+AGG + chr3_4:76045474-76045493 None:intergenic 20.0%
!!! AAAATTTCCATCAAGATTTT+TGG - chr3_4:76045509-76045528 Msa0522740:intron 20.0%
!! AGAGAGATAAATAGATAAAA+GGG + chr3_4:76045643-76045662 None:intergenic 20.0%
!! TAGAGAGATAAATAGATAAA+AGG + chr3_4:76045644-76045663 None:intergenic 20.0%
!! CTTCATTTATCCAAATAATA+AGG + chr3_4:76045676-76045695 None:intergenic 20.0%
!!! TTTTTTTTTCATCTTCCTTT+AGG - chr3_4:76046166-76046185 Msa0522740:intron 20.0%
!! AAATGAGAATAATATGATGA+GGG + chr3_4:76046302-76046321 None:intergenic 20.0%
!! TAAATGAGAATAATATGATG+AGG + chr3_4:76046303-76046322 None:intergenic 20.0%
!!! GGTTAATGCTTATTAATTTT+TGG - chr3_4:76046515-76046534 Msa0522740:intron 20.0%
!!! AAAACTTTTCTAGATTATCA+TGG + chr3_4:76046561-76046580 None:intergenic 20.0%
!! TCAAAGATCTTTATTAATCA+TGG - chr3_4:76046585-76046604 Msa0522740:intron 20.0%
!! AATCTTGAAAAAACAACTAA+TGG + chr3_4:76047146-76047165 None:intergenic 20.0%
! ATCATACTCATTGGAAAAAA+AGG - chr3_4:76043986-76044005 Msa0522740:three_prime_UTR 25.0%
!! TTATTGTTATTGCTAACACA+GGG + chr3_4:76044114-76044133 None:intergenic 25.0%
! CTAGTAATTCATTTCCTATT+TGG - chr3_4:76045102-76045121 Msa0522740:intron 25.0%
!!! TCATTTTTATTTACAGGTTG+AGG - chr3_4:76046242-76046261 Msa0522740:intron 25.0%
!!! CATTTTTATTTACAGGTTGA+GGG - chr3_4:76046243-76046262 Msa0522740:intron 25.0%
!!! ATTTCATTTTTGTGTTGTCT+CGG + chr3_4:76046274-76046293 None:intergenic 25.0%
! CAAAGTCCTTATACTATATT+TGG + chr3_4:76046738-76046757 None:intergenic 25.0%
! ACTAGTTAAGGAAACAAAAA+AGG + chr3_4:76046820-76046839 None:intergenic 25.0%
!!! CAATTGTCACTTTATAACAA+GGG + chr3_4:76046866-76046885 None:intergenic 25.0%
!!! TCAATTGTCACTTTATAACA+AGG + chr3_4:76046867-76046886 None:intergenic 25.0%
! AGCAAAACAAAAAAATTCCT+GGG + chr3_4:76047814-76047833 None:intergenic 25.0%
! AAGCAAAACAAAAAAATTCC+TGG + chr3_4:76047815-76047834 None:intergenic 25.0%
! ATCGAATCAATATCATTTAC+TGG + chr3_4:76047934-76047953 None:intergenic 25.0%
! TGATATGATGAGGAGTATAT+TGG + chr3_4:76043970-76043989 None:intergenic 30.0%
! GTTATTGTTATTGCTAACAC+AGG + chr3_4:76044115-76044134 None:intergenic 30.0%
! TTGGTTGCTAGTAAAGTTTT+GGG + chr3_4:76044440-76044459 None:intergenic 30.0%
AAAGTTCATATGAAGAACTG+TGG - chr3_4:76044743-76044762 Msa0522740:intron 30.0%
! AGAGAGTATAAATGTGATTG+TGG - chr3_4:76044770-76044789 Msa0522740:intron 30.0%
! ATAATTTTGTTACGCACAGA+AGG - chr3_4:76044906-76044925 Msa0522740:intron 30.0%
ATCACTGATGATATTGTTGA+TGG + chr3_4:76045037-76045056 None:intergenic 30.0%
ATCAACAATATCATCAGTGA+TGG - chr3_4:76045036-76045055 Msa0522740:intron 30.0%
! AATCTTTTCCAAAACAAAGG+CGG + chr3_4:76045160-76045179 None:intergenic 30.0%
! ACGAATCTTTTCCAAAACAA+AGG + chr3_4:76045163-76045182 None:intergenic 30.0%
TTGCAATTGCAAATTGATAG+TGG + chr3_4:76045186-76045205 None:intergenic 30.0%
ACTATCAATTTGCAATTGCA+AGG - chr3_4:76045185-76045204 Msa0522740:intron 30.0%
CTATCAATTTGCAATTGCAA+GGG - chr3_4:76045186-76045205 Msa0522740:intron 30.0%
! TGCTGACGGAAAATTTTATA+GGG + chr3_4:76045443-76045462 None:intergenic 30.0%
! ATGCTGACGGAAAATTTTAT+AGG + chr3_4:76045444-76045463 None:intergenic 30.0%
ATAAGGACTAAAAATGCTGA+CGG + chr3_4:76045457-76045476 None:intergenic 30.0%
!! TTGATGGAAATTTTTGACTG+GGG + chr3_4:76045503-76045522 None:intergenic 30.0%
!! CTTGATGGAAATTTTTGACT+GGG + chr3_4:76045504-76045523 None:intergenic 30.0%
! TCTTGATGGAAATTTTTGAC+TGG + chr3_4:76045505-76045524 None:intergenic 30.0%
TTAAGGACCAAAAATCTTGA+TGG + chr3_4:76045519-76045538 None:intergenic 30.0%
! CATTTTCCTTAAGCACTTTA+AGG + chr3_4:76045536-76045555 None:intergenic 30.0%
TGACCATATAAGAATGTGTT+CGG + chr3_4:76045900-76045919 None:intergenic 30.0%
TCTCGCATATTATAACCTAA+AGG + chr3_4:76046184-76046203 None:intergenic 30.0%
CACTTGTAAATTTACTTGTG+TGG - chr3_4:76046494-76046513 Msa0522740:intron 30.0%
AGGGAACCAAATATAGTATA+AGG - chr3_4:76046729-76046748 Msa0522740:intron 30.0%
ACAATTGATCCTAAATGAAC+AGG - chr3_4:76046879-76046898 Msa0522740:CDS 30.0%
CAATTGATCCTAAATGAACA+GGG - chr3_4:76046880-76046899 Msa0522740:CDS 30.0%
AGTCAAAAGGGGAAAATAAT+AGG - chr3_4:76046914-76046933 Msa0522740:CDS 30.0%
AAAAGGGGAAAATAATAGGA+AGG - chr3_4:76046918-76046937 Msa0522740:CDS 30.0%
ATTGAATGCATAGAGCAAAA+CGG + chr3_4:76046964-76046983 None:intergenic 30.0%
! GTGATCATTGTTGTTGTTAT+TGG + chr3_4:76047372-76047391 None:intergenic 30.0%
TAGACAAGAGTTTAGAAAAC+TGG - chr3_4:76047764-76047783 Msa0522740:exon 30.0%
GCAAAACAAAAAAATTCCTG+GGG + chr3_4:76047813-76047832 None:intergenic 30.0%
!!! TTTTGTTTTGCTTTTGTGAC+TGG - chr3_4:76047822-76047841 Msa0522740:five_prime_UTR 30.0%
CCAAAAATAAGAAAGAGAGT+TGG + chr3_4:76047859-76047878 None:intergenic 30.0%
!!! CCAACTCTCTTTCTTATTTT+TGG - chr3_4:76047856-76047875 Msa0522740:five_prime_UTR 30.0%
!!! ACTCTCTTTCTTATTTTTGG+AGG - chr3_4:76047859-76047878 Msa0522740:five_prime_UTR 30.0%
!!! CTCTCTTTCTTATTTTTGGA+GGG - chr3_4:76047860-76047879 Msa0522740:five_prime_UTR 30.0%
AGAATATAGAACAAGAGAGT+TGG + chr3_4:76047892-76047911 None:intergenic 30.0%
CTCTCTTGTTCTATATTCTT+TGG - chr3_4:76047893-76047912 Msa0522740:five_prime_UTR 30.0%
CCAATGAGTATGATATGATG+AGG + chr3_4:76043980-76043999 None:intergenic 35.0%
CCTCATCATATCATACTCAT+TGG - chr3_4:76043977-76043996 Msa0522740:three_prime_UTR 35.0%
!!! GAAGTATTTTTCTGAGGTTC+TGG + chr3_4:76044145-76044164 None:intergenic 35.0%
GAAAAATACTTCACCACCAA+TGG - chr3_4:76044153-76044172 Msa0522740:exon 35.0%
!!! AGGTTTCGCTTCTTTTTTGA+CGG + chr3_4:76044199-76044218 None:intergenic 35.0%
! GTTGGTTGCTAGTAAAGTTT+TGG + chr3_4:76044441-76044460 None:intergenic 35.0%
TACAGATCTCGCATATGAAA+CGG + chr3_4:76044463-76044482 None:intergenic 35.0%
ATATGCGAGATCTGTAACAA+AGG - chr3_4:76044467-76044486 Msa0522740:CDS 35.0%
TCTGTAACAAAGGATTCCAA+CGG - chr3_4:76044477-76044496 Msa0522740:CDS 35.0%
! AAGCACTTTTGTAGAAAGCA+CGG - chr3_4:76044662-76044681 Msa0522740:CDS 35.0%
! CAAAAGTGCAAAACCCAAAT+AGG + chr3_4:76045119-76045138 None:intergenic 35.0%
! ATCTTTTCCAAAACAAAGGC+GGG + chr3_4:76045159-76045178 None:intergenic 35.0%
! TTTGGTCCTTAAAGTGCTTA+AGG - chr3_4:76045527-76045546 Msa0522740:intron 35.0%
TGCTTAAGGAAAATGTCACA+GGG - chr3_4:76045541-76045560 Msa0522740:intron 35.0%
AAGCCGAACACATTCTTATA+TGG - chr3_4:76045894-76045913 Msa0522740:intron 35.0%
GATTATCATGGAAGAATTGC+AGG + chr3_4:76046549-76046568 None:intergenic 35.0%
TTGAATGCATAGAGCAAAAC+GGG + chr3_4:76046963-76046982 None:intergenic 35.0%
TCTGTGATAGAGAAAGATGT+GGG + chr3_4:76047311-76047330 None:intergenic 35.0%
TTCTGTGATAGAGAAAGATG+TGG + chr3_4:76047312-76047331 None:intergenic 35.0%
! TTGTTATTGGAGAGATAGAG+TGG + chr3_4:76047359-76047378 None:intergenic 35.0%
!! CAGTTTTGTAATGGGGAAAA+GGG + chr3_4:76047394-76047413 None:intergenic 35.0%
!! TGGAGATGCAGTTTTGTAAT+GGG + chr3_4:76047402-76047421 None:intergenic 35.0%
AATGCAGTAGCAGATAATAC+AGG + chr3_4:76047428-76047447 None:intergenic 35.0%
GTTATTCCATTGATCTGTTG+TGG + chr3_4:76047546-76047565 None:intergenic 35.0%
ACAGATCAATGGAATAACCA+TGG - chr3_4:76047548-76047567 Msa0522740:intron 35.0%
!!! TCTCTTGTTTTACATGACCA+TGG + chr3_4:76047568-76047587 None:intergenic 35.0%
TTCTAAACTCTTGTCTATGC+AGG + chr3_4:76047761-76047780 None:intergenic 35.0%
AACAAAAAAATTCCTGGGGT+GGG + chr3_4:76047809-76047828 None:intergenic 35.0%
AAACAAAAAAATTCCTGGGG+TGG + chr3_4:76047810-76047829 None:intergenic 35.0%
! TGAGGAGTATATTGGACAAG+AGG + chr3_4:76043962-76043981 None:intergenic 40.0%
TACTTACGAGAGAAGGAAGA+GGG + chr3_4:76044034-76044053 None:intergenic 40.0%
ATACTTACGAGAGAAGGAAG+AGG + chr3_4:76044035-76044054 None:intergenic 40.0%
GGACAAATACTTACGAGAGA+AGG + chr3_4:76044041-76044060 None:intergenic 40.0%
!! CAAGTTTTGGTGTAGTAGTG+TGG + chr3_4:76044089-76044108 None:intergenic 40.0%
! CTAACACAGGGATCAAGTTT+TGG + chr3_4:76044102-76044121 None:intergenic 40.0%
!! GGTGGTGAAGTATTTTTCTG+AGG + chr3_4:76044151-76044170 None:intergenic 40.0%
!!! TTTCGCTTCTTTTTTGACGG+TGG + chr3_4:76044196-76044215 None:intergenic 40.0%
TATATACACCTGGCATTCCA+GGG + chr3_4:76044222-76044241 None:intergenic 40.0%
TTATATACACCTGGCATTCC+AGG + chr3_4:76044223-76044242 None:intergenic 40.0%
CTGTAACAAAGGATTCCAAC+GGG - chr3_4:76044478-76044497 Msa0522740:CDS 40.0%
AACAGAATCTCCAACTTCAC+CGG - chr3_4:76044501-76044520 Msa0522740:CDS 40.0%
GACAAACGTACACTTTCTTG+CGG + chr3_4:76044580-76044599 None:intergenic 40.0%
! ATTGTGGCACTGTGTTTTCT+AGG - chr3_4:76044786-76044805 Msa0522740:intron 40.0%
ATGGAATGGTGAATGAGAGT+TGG - chr3_4:76044936-76044955 Msa0522740:intron 40.0%
AATGGTGAATGAGAGTTGGA+AGG - chr3_4:76044940-76044959 Msa0522740:intron 40.0%
TGAAGAAGAAGAAGGAACCA+CGG + chr3_4:76044993-76045012 None:intergenic 40.0%
! GATATTGTTGATGGAGTGAG+TGG + chr3_4:76045028-76045047 None:intergenic 40.0%
!! GGTTTTGCACTTTTGTTTCC+TGG - chr3_4:76045124-76045143 Msa0522740:intron 40.0%
GTGCTTAAGGAAAATGTCAC+AGG - chr3_4:76045540-76045559 Msa0522740:intron 40.0%
TAGTAATGCAGCCCACATTA+TGG - chr3_4:76045779-76045798 Msa0522740:intron 40.0%
TGTGAGAGGATCCATAATGT+GGG + chr3_4:76045793-76045812 None:intergenic 40.0%
TTGTTTCCTTAACTAGTGCC+CGG - chr3_4:76046823-76046842 Msa0522740:intron 40.0%
TGATCCTAAATGAACAGGGA+AGG - chr3_4:76046884-76046903 Msa0522740:CDS 40.0%
GAAGGCAGTGTAAGTCAAAA+GGG - chr3_4:76046902-76046921 Msa0522740:CDS 40.0%
AAGGCAGTGTAAGTCAAAAG+GGG - chr3_4:76046903-76046922 Msa0522740:CDS 40.0%
TGAAACAGTGAAACACAAGG+GGG + chr3_4:76047015-76047034 None:intergenic 40.0%
CTGAAACAGTGAAACACAAG+GGG + chr3_4:76047016-76047035 None:intergenic 40.0%
CCTGAAACAGTGAAACACAA+GGG + chr3_4:76047017-76047036 None:intergenic 40.0%
ACCTGAAACAGTGAAACACA+AGG + chr3_4:76047018-76047037 None:intergenic 40.0%
ACATTGCAGAAAACCCAACA+AGG - chr3_4:76047189-76047208 Msa0522740:CDS 40.0%
!! GAAGTAGAAGCGTTTGAACA+TGG + chr3_4:76047224-76047243 None:intergenic 40.0%
CTGTGATAGAGAAAGATGTG+GGG + chr3_4:76047310-76047329 None:intergenic 40.0%
!! GCAGTTTTGTAATGGGGAAA+AGG + chr3_4:76047395-76047414 None:intergenic 40.0%
!! GGAGATGCAGTTTTGTAATG+GGG + chr3_4:76047401-76047420 None:intergenic 40.0%
!! GTGGAGATGCAGTTTTGTAA+TGG + chr3_4:76047403-76047422 None:intergenic 40.0%
GTAGCAGATAATACAGGTTG+TGG + chr3_4:76047422-76047441 None:intergenic 40.0%
AAAACAAGAGAATGAGCCTG+TGG - chr3_4:76047577-76047596 Msa0522740:intron 40.0%
! TCTGCTTTGCTCACATCTTT+TGG - chr3_4:76047719-76047738 Msa0522740:CDS 40.0%
! CTTTGCTCACATCTTTTGGA+GGG - chr3_4:76047723-76047742 Msa0522740:CDS 40.0%
CTGGAAACAACTAGTTGTAC+TGG - chr3_4:76047783-76047802 Msa0522740:five_prime_UTR 40.0%
!! GTAGTAGAAAGTGCCATTGG+TGG + chr3_4:76044169-76044188 None:intergenic 45.0%
!! GGTGTAGTAGAAAGTGCCAT+TGG + chr3_4:76044172-76044191 None:intergenic 45.0%
AAAAAGAAGCGAAACCTCCC+TGG - chr3_4:76044202-76044221 Msa0522740:CDS 45.0%
AAAGCGATTACTTCAGCGTC+TGG + chr3_4:76044413-76044432 None:intergenic 45.0%
GATCTCGCATATGAAACGGT+TGG + chr3_4:76044459-76044478 None:intergenic 45.0%
AAACGTACACTTTCTTGCGG+AGG + chr3_4:76044577-76044596 None:intergenic 45.0%
!! CACAATCCTTCAAGAGCACT+CGG - chr3_4:76044620-76044639 Msa0522740:CDS 45.0%
!!! AGTGCTTTTTCACTCCTGTG+AGG + chr3_4:76044649-76044668 None:intergenic 45.0%
! GAAAGCACGGTGAGAAGAAA+TGG - chr3_4:76044675-76044694 Msa0522740:CDS 45.0%
GTGAATGAGAGTTGGAAGGA+GGG - chr3_4:76044944-76044963 Msa0522740:intron 45.0%
GGTTCCTTCTTCTTCTTCAC+CGG - chr3_4:76044994-76045013 Msa0522740:intron 45.0%
! ATTGTTGATGGAGTGAGTGG+TGG + chr3_4:76045025-76045044 None:intergenic 45.0%
CACTGAGTAGACGACAAAGT+AGG + chr3_4:76045067-76045086 None:intergenic 45.0%
!! TCTCAAACCCGCCTTTGTTT+TGG - chr3_4:76045149-76045168 Msa0522740:intron 45.0%
GTGTGAGAGGATCCATAATG+TGG + chr3_4:76045794-76045813 None:intergenic 45.0%
ATCCTCTCACACGATGACAA+TGG - chr3_4:76045802-76045821 Msa0522740:intron 45.0%
TCCTCTCACACGATGACAAT+GGG - chr3_4:76045803-76045822 Msa0522740:intron 45.0%
AAAATGTTAACGAGTGCCCC+CGG - chr3_4:76046696-76046715 Msa0522740:intron 45.0%
TGTTTCCTTAACTAGTGCCC+GGG - chr3_4:76046824-76046843 Msa0522740:intron 45.0%
! GTCTTGTTAACTAATGCCCC+GGG + chr3_4:76046844-76046863 None:intergenic 45.0%
!! GGTCTTGTTAACTAATGCCC+CGG + chr3_4:76046845-76046864 None:intergenic 45.0%
ACTGCCTTCCCTGTTCATTT+AGG + chr3_4:76046891-76046910 None:intergenic 45.0%
GGAAGGCAGTGTAAGTCAAA+AGG - chr3_4:76046901-76046920 Msa0522740:CDS 45.0%
CACAAGGGGGAAAAAAGCTT+GGG + chr3_4:76047002-76047021 None:intergenic 45.0%
ACACAAGGGGGAAAAAAGCT+TGG + chr3_4:76047003-76047022 None:intergenic 45.0%
CCCTTGTGTTTCACTGTTTC+AGG - chr3_4:76047014-76047033 Msa0522740:intron 45.0%
!! GTAGAAGCGTTTGAACATGG+CGG + chr3_4:76047221-76047240 None:intergenic 45.0%
GTGAAAAGTGAGAGGGTTGT+GGG + chr3_4:76047335-76047354 None:intergenic 45.0%
TGTGAAAAGTGAGAGGGTTG+TGG + chr3_4:76047336-76047355 None:intergenic 45.0%
GAGTGGTGTGAAAAGTGAGA+GGG + chr3_4:76047342-76047361 None:intergenic 45.0%
AGAGTGGTGTGAAAAGTGAG+AGG + chr3_4:76047343-76047362 None:intergenic 45.0%
ACTCCAAAAAGCTGCTCAAG+TGG - chr3_4:76047448-76047467 Msa0522740:CDS 45.0%
CTCCAAAAAGCTGCTCAAGT+GGG - chr3_4:76047449-76047468 Msa0522740:CDS 45.0%
! AACCCACTTGAGCAGCTTTT+TGG + chr3_4:76047454-76047473 None:intergenic 45.0%
AGCCTGTGGCAGATTATCTT+GGG - chr3_4:76047591-76047610 Msa0522740:intron 45.0%
TGCTAAGACCGAGAAGATCA+CGG + chr3_4:76047670-76047689 None:intergenic 45.0%
TGATCTTCTCGGTCTTAGCA+TGG - chr3_4:76047670-76047689 Msa0522740:intron 45.0%
GATCTTCTCGGTCTTAGCAT+GGG - chr3_4:76047671-76047690 Msa0522740:intron 45.0%
! GCTTTGCTCACATCTTTTGG+AGG - chr3_4:76047722-76047741 Msa0522740:CDS 45.0%
GTACTGTGTACACAACGAGG+CGG + chr3_4:76044065-76044084 None:intergenic 50.0%
GGTGTACTGTGTACACAACG+AGG + chr3_4:76044068-76044087 None:intergenic 50.0%
!!! CGCTTCTTTTTTGACGGTGG+CGG + chr3_4:76044193-76044212 None:intergenic 50.0%
TCAGCGTCTGGATCTGCAAA+CGG + chr3_4:76044401-76044420 None:intergenic 50.0%
GTTGGAGATTCTGTTCCCGT+TGG + chr3_4:76044496-76044515 None:intergenic 50.0%
TGAAGGATTGTGGTGAACGC+AGG + chr3_4:76044612-76044631 None:intergenic 50.0%
CGAGTGCTCTTGAAGGATTG+TGG + chr3_4:76044622-76044641 None:intergenic 50.0%
CAGAAGGTTCTGCGATGGAA+TGG - chr3_4:76044922-76044941 Msa0522740:intron 50.0%
GGTGAATGAGAGTTGGAAGG+AGG - chr3_4:76044943-76044962 Msa0522740:intron 50.0%
AATGAGAGTTGGAAGGAGGG+TGG - chr3_4:76044947-76044966 Msa0522740:intron 50.0%
TAGCAATAACGCTGTTGCCG+TGG - chr3_4:76044973-76044992 Msa0522740:intron 50.0%
GTAGCCGGTGAAGAAGAAGA+AGG + chr3_4:76045001-76045020 None:intergenic 50.0%
TTGTCGTCTACTCAGTGCTC+AGG - chr3_4:76045070-76045089 Msa0522740:intron 50.0%
! AAAGGCGGGTTTGAGATACC+AGG + chr3_4:76045145-76045164 None:intergenic 50.0%
TGGGCTGCATTACTACTCAG+CGG + chr3_4:76045774-76045793 None:intergenic 50.0%
TCCCATTGTCATCGTGTGAG+AGG + chr3_4:76045807-76045826 None:intergenic 50.0%
TGGGACAGTGTGAGTCTTTG+TGG - chr3_4:76045822-76045841 Msa0522740:intron 50.0%
GGGACAGTGTGAGTCTTTGT+GGG - chr3_4:76045823-76045842 Msa0522740:intron 50.0%
CAGTGTGAGTCTTTGTGGGA+AGG - chr3_4:76045827-76045846 Msa0522740:intron 50.0%
TGGTTCCCTTAACGAGTGTC+CGG + chr3_4:76046718-76046737 None:intergenic 50.0%
GTTTCCTTAACTAGTGCCCG+GGG - chr3_4:76046825-76046844 Msa0522740:intron 50.0%
GGGAAAAAAGCTTGGGAGTG+GGG + chr3_4:76046995-76047014 None:intergenic 50.0%
GGGGAAAAAAGCTTGGGAGT+GGG + chr3_4:76046996-76047015 None:intergenic 50.0%
GATGTGGGGATATCTGAGTG+AGG + chr3_4:76047296-76047315 None:intergenic 50.0%
AGCACGAAGCAAGGATGCAT+TGG + chr3_4:76047486-76047505 None:intergenic 50.0%
GCATCCTTGCTTCGTGCTTT+AGG - chr3_4:76047488-76047507 Msa0522740:CDS 50.0%
CAAGCCTAAAGCACGAAGCA+AGG + chr3_4:76047495-76047514 None:intergenic 50.0%
GCAGCACCACAACAGATCAA+TGG - chr3_4:76047537-76047556 Msa0522740:intron 50.0%
GAGCCTGTGGCAGATTATCT+TGG - chr3_4:76047590-76047609 Msa0522740:intron 50.0%
AGCCCAAGATAATCTGCCAC+AGG + chr3_4:76047596-76047615 None:intergenic 50.0%
GTGGCAGATTATCTTGGGCT+TGG - chr3_4:76047596-76047615 Msa0522740:intron 50.0%
ACTTCCCTGTGGGAATGAGA+CGG - chr3_4:76047619-76047638 Msa0522740:intron 50.0%
GCTAAGACCGAGAAGATCAC+GGG + chr3_4:76047669-76047688 None:intergenic 50.0%
TCTCGGTCTTAGCATGGGAT+TGG - chr3_4:76047676-76047695 Msa0522740:intron 50.0%
CTCGGTCTTAGCATGGGATT+GGG - chr3_4:76047677-76047696 Msa0522740:intron 50.0%
TAGCATGGGATTGGGTAGAG+AGG - chr3_4:76047685-76047704 Msa0522740:intron 50.0%
ATACACCTGGCATTCCAGGG+AGG + chr3_4:76044219-76044238 None:intergenic 55.0%
AATCTCCAACTTCACCGGCG+AGG - chr3_4:76044506-76044525 Msa0522740:CDS 55.0%
ACAACATGCCGTGGAAGCTC+CGG - chr3_4:76044531-76044550 Msa0522740:CDS 55.0%
GGATTGTGGTGAACGCAGGA+AGG + chr3_4:76044608-76044627 None:intergenic 55.0%
AGGTCACCGAGTGCTCTTGA+AGG + chr3_4:76044629-76044648 None:intergenic 55.0%
ACGCACAGAAGGTTCTGCGA+TGG - chr3_4:76044917-76044936 Msa0522740:intron 55.0%
TTCCCTTAACGAGTGTCCGG+GGG + chr3_4:76046715-76046734 None:intergenic 55.0%
GTTCCCTTAACGAGTGTCCG+GGG + chr3_4:76046716-76046735 None:intergenic 55.0%
GGTTCCCTTAACGAGTGTCC+GGG + chr3_4:76046717-76046736 None:intergenic 55.0%
AATGCCCCGGGCACTAGTTA+AGG + chr3_4:76046832-76046851 None:intergenic 55.0%
GGGGGAAAAAAGCTTGGGAG+TGG + chr3_4:76046997-76047016 None:intergenic 55.0%
!! ATGGCGGTGACAGCCTTGTT+GGG + chr3_4:76047205-76047224 None:intergenic 55.0%
TTGGGCTTGGACTTCCCTGT+GGG - chr3_4:76047609-76047628 Msa0522740:intron 55.0%
CTTCCCTGTGGGAATGAGAC+GGG - chr3_4:76047620-76047639 Msa0522740:intron 55.0%
TTCCCTGTGGGAATGAGACG+GGG - chr3_4:76047621-76047640 Msa0522740:intron 55.0%
CCGAGAAGATCACGGGTCAT+GGG + chr3_4:76047662-76047681 None:intergenic 55.0%
CCCATGACCCGTGATCTTCT+CGG - chr3_4:76047659-76047678 Msa0522740:intron 55.0%
ACCGAGAAGATCACGGGTCA+TGG + chr3_4:76047663-76047682 None:intergenic 55.0%
CTGTGTACACAACGAGGCGG+CGG + chr3_4:76044062-76044081 None:intergenic 60.0%
CGAAACCTCCCTGGAATGCC+AGG - chr3_4:76044211-76044230 Msa0522740:CDS 60.0%
TGTGTCCTCGCCGGTGAAGT+TGG + chr3_4:76044514-76044533 None:intergenic 60.0%
ACGGCATGTTGTGTCCTCGC+CGG + chr3_4:76044523-76044542 None:intergenic 60.0%
TTTCGTCGTTCGCTCGCTGC+CGG + chr3_4:76044553-76044572 None:intergenic 60.0%
TGGTGAACGCAGGAAGGCTC+AGG + chr3_4:76044602-76044621 None:intergenic 60.0%
! AGAGCACTCGGTGACCTCAC+AGG - chr3_4:76044632-76044651 Msa0522740:CDS 60.0%
TGCCCCCGGACACTCGTTAA+GGG - chr3_4:76046710-76046729 Msa0522740:intron 60.0%
! CATGGCGGTGACAGCCTTGT+TGG + chr3_4:76047206-76047225 None:intergenic 60.0%
CTTGGGCTTGGACTTCCCTG+TGG - chr3_4:76047608-76047627 Msa0522740:intron 60.0%
TCCCTGTGGGAATGAGACGG+GGG - chr3_4:76047622-76047641 Msa0522740:intron 60.0%
GAAGATCACGGGTCATGGGC+TGG + chr3_4:76047658-76047677 None:intergenic 60.0%
! TAGTTGTACTGGCCCACCCC+AGG - chr3_4:76047794-76047813 Msa0522740:five_prime_UTR 60.0%
GGCGAGGACACAACATGCCG+TGG - chr3_4:76044522-76044541 Msa0522740:CDS 65.0%
! GGAGTGAGTGGTGGCGTAGC+CGG + chr3_4:76045016-76045035 None:intergenic 65.0%
GTGCCCCCGGACACTCGTTA+AGG - chr3_4:76046709-76046728 Msa0522740:intron 65.0%
CCCCCCGTCTCATTCCCACA+GGG + chr3_4:76047626-76047645 None:intergenic 65.0%
CCCTGTGGGAATGAGACGGG+GGG - chr3_4:76047623-76047642 Msa0522740:intron 65.0%
GCTCGCTGCCGGAGCTTCCA+CGG + chr3_4:76044542-76044561 None:intergenic 70.0%
GCCCCCCGTCTCATTCCCAC+AGG + chr3_4:76047627-76047646 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 76043949 76047971 76043949 ID=Msa0522740;Name=Msa0522740
chr3_4 mRNA 76043949 76047971 76043949 ID=Msa0522740-mRNA-1;Parent=Msa0522740;Name=Msa0522740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=190|1|1|1|1|1|4|205|420
chr3_4 exon 76043949 76044731 76043949 ID=Msa0522740-mRNA-1:exon:21861;Parent=Msa0522740-mRNA-1
chr3_4 exon 76046829 76047019 76046829 ID=Msa0522740-mRNA-1:exon:21860;Parent=Msa0522740-mRNA-1
chr3_4 exon 76047113 76047512 76047113 ID=Msa0522740-mRNA-1:exon:21859;Parent=Msa0522740-mRNA-1
chr3_4 exon 76047688 76047971 76047688 ID=Msa0522740-mRNA-1:exon:21858;Parent=Msa0522740-mRNA-1
chr3_4 five_prime_UTR 76047782 76047971 76047782 ID=Msa0522740-mRNA-1:five_prime_utr;Parent=Msa0522740-mRNA-1
chr3_4 CDS 76047688 76047781 76047688 ID=Msa0522740-mRNA-1:cds;Parent=Msa0522740-mRNA-1
chr3_4 CDS 76047113 76047512 76047113 ID=Msa0522740-mRNA-1:cds;Parent=Msa0522740-mRNA-1
chr3_4 CDS 76046829 76047019 76046829 ID=Msa0522740-mRNA-1:cds;Parent=Msa0522740-mRNA-1
chr3_4 CDS 76044154 76044731 76044154 ID=Msa0522740-mRNA-1:cds;Parent=Msa0522740-mRNA-1
chr3_4 three_prime_UTR 76043949 76044153 76043949 ID=Msa0522740-mRNA-1:three_prime_utr;Parent=Msa0522740-mRNA-1
Gene Sequence

>Msa0522740

ATGCCAGAACCTCAGAAAAATACTTCACCACCAATGGCACTTTCTACTACACCGCCACCGTCAAAAAAGAAGCGAAACCTCCCTGGAATGCCAGATCCAGACGCTGAAGTAATCGCTTTATCACCCAAAACTTTACTAGCAACCAACCGTTTCATATGCGAGATCTGTAACAAAGGATTCCAACGGGAACAGAATCTCCAACTTCACCGGCGAGGACACAACATGCCGTGGAAGCTCCGGCAGCGAGCGAACGACGAAATCCTCCGCAAGAAAGTGTACGTTTGTCCTGAGCCTTCCTGCGTTCACCACAATCCTTCAAGAGCACTCGGTGACCTCACAGGAGTGAAAAAGCACTTTTGTAGAAAGCACGGTGAGAAGAAATGGAAATGTGAACGTTGTTCTAAAAAATACGCTGCGAAATGTGATTTGAAAGTTCATATGAAGAACTGTGGAACTAGAGAGTATAAATGTGATTGTGGCACTGTGTTTTCTAGGAAGGATAATTTTGTTACGCACAGAAGGTTCTGCGATGGAATGGTGAATGAGAGTTGGAAGGAGGGTGGTAGTAGCAATAACGCTGTTGCCGTGGTTCCTTCTTCTTCTTCACCGGCTACGCCACCACTCACTCCATCAACAATATCATCAGTGATGGTGTCTCCTACTTTGTCGTCTACTCAGTGCTCAGACATTGCAGAAAACCCAACAAGGCTGTCACCGCCATGTTCAAACGCTTCTACTTCTACTTCTACTAGCTGTTGTTCTTCTTTCAGCAGTCTCATGTCAAGCTTGCCTCACTCAGATATCCCCACATCTTTCTCTATCACAGAACCCACAACCCTCTCACTTTTCACACCACTCTATCTCTCCAATAACAACAACAATGATCACCCTTTTCCCCATTACAAAACTGCATCTCCACAACCTGTATTATCTGCTACTGCATTACTCCAAAAAGCTGCTCAAGTGGGTTCATCTTCATCCAATGCATCCTTGCTTCGTGCTTTAGGCTTGAAAGACAACAGTGTCAGTATTAGCAGCACCACAACAGATCAATGGAATAACCATGGTCATGTAAAACAAGAGAATGAGCCTGTGGCAGATTATCTTGGGCTTGGACTTCCCTGTGGGAATGAGACGGGGGGCTCATCGAACCAGCCCATGACCCGTGATCTTCTCGGTCTTAGCATGGGATTGGGTAGAGAGGATGATGATCTTTCTGCTTTGCTCACATCTTTTGGAGGGAACTTCGATTCACCTGCATAG
Protein sequence

>Msa0522740

MPEPQKNTSPPMALSTTPPPSKKKRNLPGMPDPDAEVIALSPKTLLATNRFICEICNKGFQREQNLQLHRRGHNMPWKLRQRANDEILRKKVYVCPEPSCVHHNPSRALGDLTGVKKHFCRKHGEKKWKCERCSKKYAAKCDLKVHMKNCGTREYKCDCGTVFSRKDNFVTHRRFCDGMVNESWKEGGSSNNAVAVVPSSSSPATPPLTPSTISSVMVSPTLSSTQCSDIAENPTRLSPPCSNASTSTSTSCCSSFSSLMSSLPHSDIPTSFSITEPTTLSLFTPLYLSNNNNNDHPFPHYKTASPQPVLSATALLQKAAQVGSSSSNASLLRALGLKDNSVSISSTTTDQWNNHGHVKQENEPVADYLGLGLPCGNETGGSSNQPMTRDLLGLSMGLGREDDDLSALLTSFGGNFDSPA*