AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0384340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384340 MtrunA17_Chr3g0141431 91.885 419 24 5 1 419 1 409 0.0 714
Msa0384340 MtrunA17_Chr8g0373541 48.605 430 150 10 16 382 26 447 1.62e-116 350
Msa0384340 MtrunA17_Chr1g0185121 52.336 321 129 7 16 332 33 333 2.08e-103 314
Msa0384340 MtrunA17_Chr4g0029521 45.604 364 150 8 19 363 34 368 8.90e-103 314
Msa0384340 MtrunA17_Chr1g0181381 74.444 180 44 1 5 184 22 199 4.32e-102 312
Msa0384340 MtrunA17_Chr8g0342421 48.098 368 141 10 2 356 45 375 6.88e-102 312
Msa0384340 MtrunA17_Chr2g0330171 49.408 338 130 8 21 352 44 346 1.73e-100 307
Msa0384340 MtrunA17_Chr1g0191991 54.403 318 114 8 20 330 60 353 2.25e-100 309
Msa0384340 MtrunA17_Chr4g0040571 70.879 182 52 1 10 191 26 206 5.40e-99 304
Msa0384340 MtrunA17_Chr7g0263941 50.305 328 105 8 19 334 30 311 1.03e-98 300
Msa0384340 MtrunA17_Chr1g0199101 72.131 183 50 1 2 184 26 207 1.95e-97 301
Msa0384340 MtrunA17_Chr1g0162971 42.716 405 181 12 23 393 41 428 4.76e-97 297
Msa0384340 MtrunA17_Chr7g0268961 51.935 310 117 7 33 331 32 320 4.90e-96 296
Msa0384340 MtrunA17_Chr1g0163001 72.455 167 45 1 21 187 41 206 1.35e-93 291
Msa0384340 MtrunA17_Chr2g0326381 72.289 166 46 0 23 188 32 197 3.53e-92 284
Msa0384340 MtrunA17_Chr1g0210821 74.051 158 40 1 26 183 47 203 5.12e-91 286
Msa0384340 MtrunA17_Chr2g0324991 78.030 132 28 1 34 165 3 133 1.28e-76 234
Msa0384340 MtrunA17_Chr6g0479921 45.588 272 135 7 18 286 24 285 8.11e-71 230
Msa0384340 MtrunA17_Chr8g0375521 60.256 156 61 1 23 177 27 182 1.07e-69 226
Msa0384340 MtrunA17_Chr3g0123941 38.750 160 89 4 28 179 113 271 1.13e-24 103
Msa0384340 MtrunA17_Chr1g0200421 36.364 154 87 3 37 179 236 389 4.68e-24 104
Msa0384340 MtrunA17_Chr2g0320341 33.548 155 90 3 32 173 224 378 1.63e-23 101
Msa0384340 MtrunA17_Chr8g0382121 35.526 152 87 5 36 176 109 260 8.32e-20 89.7
Msa0384340 MtrunA17_Chr5g0422571 33.136 169 103 5 20 179 82 249 4.32e-19 87.0
Msa0384340 MtrunA17_Chr8g0352011 34.058 138 81 4 44 173 171 306 5.89e-17 81.6
Msa0384340 MtrunA17_Chr2g0328921 31.325 166 96 5 16 173 123 278 6.12e-17 81.3
Msa0384340 MtrunA17_Chr7g0258011 31.847 157 88 5 44 183 181 335 6.18e-17 81.6
Msa0384340 MtrunA17_Chr4g0026521 33.813 139 84 3 44 175 123 260 6.94e-17 80.9
Msa0384340 MtrunA17_Chr1g0173841 32.857 140 84 4 44 175 220 357 2.15e-16 80.5
Msa0384340 MtrunA17_Chr1g0198651 30.405 148 89 5 44 179 107 252 3.94e-16 78.6
Msa0384340 MtrunA17_Chr4g0053341 30.612 147 94 3 34 173 69 214 5.31e-16 77.0
Msa0384340 MtrunA17_Chr2g0321291 33.094 139 85 3 44 175 138 275 1.81e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384340 AT3G50700.1 47.202 411 201 7 12 416 27 427 6.49e-111 333
Msa0384340 AT3G13810.6 74.545 165 42 0 23 187 51 215 3.84e-97 300
Msa0384340 AT3G13810.5 74.545 165 42 0 23 187 65 229 4.36e-97 300
Msa0384340 AT3G13810.4 74.545 165 42 0 23 187 70 234 6.09e-97 300
Msa0384340 AT3G13810.1 74.545 165 42 0 23 187 70 234 6.09e-97 300
Msa0384340 AT1G03840.1 73.964 169 43 1 16 184 34 201 7.30e-97 299
Msa0384340 AT1G55110.3 75.926 162 39 0 23 184 63 224 2.62e-96 296
Msa0384340 AT1G55110.1 75.926 162 39 0 23 184 63 224 2.62e-96 296
Msa0384340 AT1G55110.2 75.926 162 39 0 23 184 63 224 2.62e-96 296
Msa0384340 AT1G14580.1 69.942 173 51 1 14 186 44 215 4.57e-96 296
Msa0384340 AT1G14580.2 69.942 173 51 1 14 186 44 215 4.57e-96 296
Msa0384340 AT1G14580.3 69.942 173 51 1 14 186 58 229 6.77e-96 296
Msa0384340 AT5G03150.1 64.039 203 65 1 22 224 52 246 3.59e-95 295
Msa0384340 AT4G02670.1 70.053 187 45 1 23 209 53 228 4.63e-95 291
Msa0384340 AT4G02670.2 70.053 187 45 1 23 209 55 230 4.82e-95 291
Msa0384340 AT2G02080.1 69.364 173 51 2 14 186 46 216 1.70e-94 293
Msa0384340 AT2G02080.4 69.364 173 51 2 14 186 46 216 1.70e-94 293
Msa0384340 AT2G02080.5 69.364 173 51 2 14 186 46 216 1.70e-94 293
Msa0384340 AT2G02080.3 69.364 173 51 2 14 186 46 216 1.70e-94 293
Msa0384340 AT1G03840.2 72.781 169 43 2 16 184 34 199 1.11e-93 291
Msa0384340 AT5G44160.1 66.667 186 61 1 1 186 15 199 1.97e-93 289
Msa0384340 AT3G45260.2 73.006 163 44 0 22 184 38 200 1.42e-92 286
Msa0384340 AT3G45260.1 73.006 163 44 0 22 184 38 200 1.42e-92 286
Msa0384340 AT5G60470.2 59.375 224 80 3 14 235 36 250 2.25e-92 286
Msa0384340 AT5G60470.3 59.375 224 80 3 14 235 32 246 2.83e-92 286
Msa0384340 AT3G13810.3 74.675 154 39 0 34 187 68 221 1.48e-90 283
Msa0384340 AT3G13810.2 74.675 154 39 0 34 187 82 235 1.66e-90 283
Msa0384340 AT2G02070.2 71.515 165 46 1 23 187 52 215 3.86e-90 285
Msa0384340 AT2G02070.1 71.515 165 46 1 23 187 52 215 3.86e-90 285
Msa0384340 AT5G60470.1 55.263 228 89 3 13 235 22 241 1.53e-85 268
Msa0384340 AT5G44160.2 60.733 191 69 3 33 222 8 193 5.22e-85 266
Msa0384340 AT2G02080.6 68.571 140 43 1 47 186 1 139 2.09e-77 247
Msa0384340 AT2G02080.2 68.571 140 43 1 47 186 1 139 2.09e-77 247
Msa0384340 AT2G01940.1 54.000 200 89 2 16 214 37 234 3.28e-72 234
Msa0384340 AT1G68130.1 60.870 161 62 1 18 177 36 196 1.33e-71 231
Msa0384340 AT1G25250.3 61.783 157 58 2 23 177 33 189 4.07e-70 226
Msa0384340 AT2G01940.3 52.736 201 91 3 16 214 37 235 5.72e-68 223
Msa0384340 AT1G25250.1 61.745 149 55 2 31 177 18 166 6.85e-67 217
Msa0384340 AT5G66730.1 39.783 460 193 18 23 413 32 476 4.63e-64 214
Msa0384340 AT1G68130.2 60.909 110 42 1 69 177 1 110 4.73e-45 159
Msa0384340 AT2G01940.2 51.020 147 69 2 69 214 1 145 1.14e-44 159
Msa0384340 AT1G25250.2 59.459 111 43 2 69 177 1 111 7.92e-43 152
Msa0384340 AT5G22890.1 33.708 178 103 4 17 181 184 359 2.20e-23 101
Msa0384340 AT1G34370.3 35.897 156 87 4 31 173 13 168 3.49e-23 99.0
Msa0384340 AT1G34370.2 35.185 162 92 4 31 179 223 384 6.26e-23 101
Msa0384340 AT1G34370.1 35.185 162 92 4 31 179 223 384 6.26e-23 101
Msa0384340 AT1G13290.1 31.088 193 116 8 3 179 46 237 2.30e-17 82.8
Msa0384340 AT1G51220.1 32.653 147 88 5 44 181 170 314 6.43e-17 82.0
Msa0384340 AT3G20880.1 33.333 147 87 5 44 181 248 392 8.41e-17 82.4
Msa0384340 AT1G08290.1 33.721 172 92 7 23 175 142 310 2.92e-16 80.1
Msa0384340 AT3G57670.1 32.609 138 83 4 44 173 209 344 4.85e-16 79.7
Msa0384340 AT1G34790.1 33.103 145 89 3 36 173 129 272 6.13e-15 75.5

Find 119 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTTGTTCTATATTCTT+TGG 0.186815 3_1:-87386398 Msa0384340:three_prime_UTR
TCTGCTTTGCTCACATCTTT+TGG 0.214858 3_1:-87386572 Msa0384340:CDS
GTGATCATTGTTGTTGTTAT+TGG 0.219266 3_1:+87386922 None:intergenic
GCATCCTTGCTTCGTGCTTT+AGG 0.267894 3_1:-87386803 Msa0384340:CDS
GTTGGTTGCTAGTAAAGTTT+TGG 0.275277 3_1:+87389868 None:intergenic
CTAACACAGGGATCAAGTTT+TGG 0.328062 3_1:+87390210 None:intergenic
TTATATACACCTGGCATTCC+AGG 0.339087 3_1:+87390086 None:intergenic
ATCGAATCAATATCATTTAC+TGG 0.347905 3_1:+87386360 None:intergenic
TTTCGTCGTTCGCTCGCTTC+CGG 0.352048 3_1:+87389756 None:intergenic
TAGACAAGAGTTTAGAAAAC+TGG 0.354434 3_1:-87386527 Msa0384340:three_prime_UTR
CCCATGACCCGTGATCTTCT+CGG 0.362988 3_1:-87386632 Msa0384340:CDS
GTGGCAGATTATCTTGGGCT+TGG 0.371694 3_1:-87386695 Msa0384340:CDS
TGATATGATGAGGAGTATAT+TGG 0.381830 3_1:+87390342 None:intergenic
TCTCGGTCTTAGCATGGGAT+TGG 0.395080 3_1:-87386615 Msa0384340:CDS
GAGCCTGTGGCAGATTATCT+TGG 0.397193 3_1:-87386701 Msa0384340:CDS
CTTCCCTGTGGGAATGAGAC+GGG 0.408229 3_1:-87386671 Msa0384340:CDS
GAAAGCACGGTGAGAAGAAA+TGG 0.413209 3_1:-87389631 Msa0384340:CDS
CCTCATCATATCATACTCAT+TGG 0.418232 3_1:-87390332 Msa0384340:five_prime_UTR
ATCACTGATGATATTGTTGA+TGG 0.423893 3_1:+87389269 None:intergenic
TTCTAAACTCTTGTCTATGC+AGG 0.423930 3_1:+87386533 None:intergenic
CATGGCGGTGACAGCCTTGT+TGG 0.441434 3_1:+87387088 None:intergenic
ATGGCGGTGACAGCCTTGTT+GGG 0.445830 3_1:+87387089 None:intergenic
CTCGGTCTTAGCATGGGATT+GGG 0.446112 3_1:-87386614 Msa0384340:CDS
AAAGCGATTACTTCAGCGTC+TGG 0.457409 3_1:+87389896 None:intergenic
AGCCTGTGGCAGATTATCTT+GGG 0.461391 3_1:-87386700 Msa0384340:CDS
ACCGAGAAGATCACGGGTCA+TGG 0.464536 3_1:+87386631 None:intergenic
CGAAACCTCCCTGGAATGCC+AGG 0.466668 3_1:-87390095 Msa0384340:intron
GGAGTGAGTGGTGGCGTAGC+CGG 0.477319 3_1:+87389290 None:intergenic
TGTGAAAAGTGAGAGGGTTG+TGG 0.480243 3_1:+87386958 None:intergenic
AGCACGAAGCAAGGATGCAT+TGG 0.486996 3_1:+87386808 None:intergenic
ACAACATGCCGTGGAAGCTC+CGG 0.494508 3_1:-87389775 Msa0384340:CDS
TGATCTTCTCGGTCTTAGCA+TGG 0.494778 3_1:-87386621 Msa0384340:CDS
CTGGAAACAACTAGTTGTAC+TGG 0.499057 3_1:-87386508 Msa0384340:three_prime_UTR
GTGAAAAGTGAGAGGGTTGT+GGG 0.501902 3_1:+87386959 None:intergenic
TTCCCTGTGGGAATGAGACG+GGG 0.506510 3_1:-87386670 Msa0384340:CDS
TGGTGAACGCAGGAAGGCTC+AGG 0.513816 3_1:+87389707 None:intergenic
TACAGATCTCGCATATGAAA+CGG 0.517803 3_1:+87389846 None:intergenic
GATCTTCTCGGTCTTAGCAT+GGG 0.522076 3_1:-87386620 Msa0384340:CDS
GTTATTCCATTGATCTGTTG+TGG 0.526630 3_1:+87386748 None:intergenic
GAAGATCACGGGTCATGGGC+TGG 0.528136 3_1:+87386636 None:intergenic
TTGTTATTGGAGAGATAGAG+TGG 0.529493 3_1:+87386935 None:intergenic
CTGTAACAAAGGATTCCAAC+GGG 0.530824 3_1:-87389828 Msa0384340:CDS
GTTATTGTTATTGCTAACAC+AGG 0.531187 3_1:+87390197 None:intergenic
AGAATATAGAACAAGAGAGT+TGG 0.531503 3_1:+87386402 None:intergenic
ATATGCGAGATCTGTAACAA+AGG 0.533818 3_1:-87389839 Msa0384340:CDS
CAGAAGGTTCTGCGATGGAA+TGG 0.534515 3_1:-87389384 Msa0384340:CDS
TGTGTCCTCGCCGGTGAAGT+TGG 0.538471 3_1:+87389795 None:intergenic
TATATACACCTGGCATTCCA+GGG 0.541617 3_1:+87390087 None:intergenic
CCGAGAAGATCACGGGTCAT+GGG 0.542667 3_1:+87386632 None:intergenic
AATGCAGTAGCAGATAATAC+AGG 0.542965 3_1:+87386866 None:intergenic
TTGGGCTTGGACTTCCCTGT+GGG 0.543392 3_1:-87386682 Msa0384340:CDS
GCTCGCTTCCGGAGCTTCCA+CGG 0.544769 3_1:+87389767 None:intergenic
ACTTCCCTGTGGGAATGAGA+CGG 0.547067 3_1:-87386672 Msa0384340:CDS
TTGTCGTCTACTCAGTGCTC+AGG 0.547564 3_1:-87389233 Msa0384340:intron
GCAGCACCACAACAGATCAA+TGG 0.551093 3_1:-87386754 Msa0384340:CDS
TGAGGAGTATATTGGACAAG+AGG 0.551363 3_1:+87390350 None:intergenic
GTAGCAGATAATACAGGTTG+TGG 0.552729 3_1:+87386872 None:intergenic
AAAGTTCATATGAAGAGTTG+TGG 0.555520 3_1:-87389563 Msa0384340:CDS
GTTGGAGATTCTGTTCCCGT+TGG 0.557245 3_1:+87389813 None:intergenic
AGGTCACCGAGTGCTCTTGA+AGG 0.557256 3_1:+87389680 None:intergenic
GTGAATGAGAGTTGGAAGGA+GGG 0.557913 3_1:-87389362 Msa0384340:CDS
TAGTTGTACTGGCCCACCCC+AGG 0.558567 3_1:-87386497 Msa0384340:three_prime_UTR
CTTGGGCTTGGACTTCCCTG+TGG 0.559790 3_1:-87386683 Msa0384340:CDS
CACAATCCTTCAAGAGCACT+CGG 0.561083 3_1:-87389686 Msa0384340:CDS
AGAGTGGTGTGAAAAGTGAG+AGG 0.562539 3_1:+87386951 None:intergenic
AACAGAATCTCCAACTTCAC+CGG 0.564489 3_1:-87389805 Msa0384340:CDS
ACGGCATGTTGTGTCCTCGC+CGG 0.565267 3_1:+87389786 None:intergenic
TCCCTGTGGGAATGAGACGG+GGG 0.566052 3_1:-87386669 Msa0384340:CDS
AGAGAGTATAAATGTGATTG+TGG 0.571517 3_1:-87389536 Msa0384340:CDS
ATGGAATGGTGAATGAGAGT+TGG 0.571967 3_1:-87389370 Msa0384340:CDS
GAAGTAGAAGCGTTTGAACA+TGG 0.574940 3_1:+87387070 None:intergenic
ATCAACAATATCATCAGTGA+TGG 0.575729 3_1:-87389267 Msa0384340:CDS
AGAGCACTCGGTGACCTCAC+AGG 0.584571 3_1:-87389674 Msa0384340:CDS
AATGAGAGTTGGAAGGAGGG+TGG 0.585791 3_1:-87389359 Msa0384340:CDS
AGCCCAAGATAATCTGCCAC+AGG 0.587033 3_1:+87386698 None:intergenic
ATACTTACTAGAGAAGGAAG+AGG 0.588637 3_1:+87390277 None:intergenic
CTGTGTACACAACGAGGCGG+CGG 0.589206 3_1:+87390250 None:intergenic
GCCGGTGAAGAAGAAGAAGA+AGG 0.591860 3_1:+87389308 None:intergenic
GCTAAGACCGAGAAGATCAC+GGG 0.592165 3_1:+87386625 None:intergenic
TCTGTGATAGAGAAAGATGT+GGG 0.592327 3_1:+87386983 None:intergenic
GGCGAGGACACAACATGCCG+TGG 0.596259 3_1:-87389784 Msa0384340:CDS
CAAGCCTAAAGCACGAAGCA+AGG 0.596303 3_1:+87386799 None:intergenic
TGCTAAGACCGAGAAGATCA+CGG 0.597202 3_1:+87386624 None:intergenic
GGACAAATACTTACTAGAGA+AGG 0.597381 3_1:+87390271 None:intergenic
CCAATGAGTATGATATGATG+AGG 0.598194 3_1:+87390332 None:intergenic
TGAAGGATTGTGGTGAACGC+AGG 0.600303 3_1:+87389697 None:intergenic
GGTGAATGAGAGTTGGAAGG+AGG 0.600831 3_1:-87389363 Msa0384340:CDS
GGTGGCGGTGTAGTAGAAAG+TGG 0.610378 3_1:+87390131 None:intergenic
GATATTGTTGATGGAGTGAG+TGG 0.614576 3_1:+87389278 None:intergenic
GACAAACGTACACTTTCTTG+CGG 0.615008 3_1:+87389729 None:intergenic
TAGCAATAACGCTGTTGCCG+TGG 0.616354 3_1:-87389333 Msa0384340:CDS
ATTGTTGATGGAGTGAGTGG+TGG 0.622386 3_1:+87389281 None:intergenic
GTAGTAGAAAGTGGCATTGG+TGG 0.622904 3_1:+87390140 None:intergenic
CCCTGTGGGAATGAGACGGG+GGG 0.624937 3_1:-87386668 Msa0384340:CDS
AAACGTACACTTTCTTGCGG+AGG 0.628231 3_1:+87389732 None:intergenic
TCTGTAACAAAGGATTCCAA+CGG 0.628991 3_1:-87389829 Msa0384340:CDS
GGATTGTGGTGAACGCAGGA+AGG 0.629061 3_1:+87389701 None:intergenic
CACTGAGTAGACGACAAAGT+AGG 0.633598 3_1:+87389239 None:intergenic
TTATTGTTATTGCTAACACA+GGG 0.635591 3_1:+87390198 None:intergenic
GATCTCGCATATGAAACGGT+TGG 0.639364 3_1:+87389850 None:intergenic
ACGCACAGAAGGTTCTGCGA+TGG 0.641919 3_1:-87389389 Msa0384340:CDS
GGTGTAGTAGAAAGTGGCAT+TGG 0.645281 3_1:+87390137 None:intergenic
TACTTACTAGAGAAGGAAGA+GGG 0.646668 3_1:+87390278 None:intergenic
TAGCATGGGATTGGGTAGAG+AGG 0.647406 3_1:-87386606 Msa0384340:CDS
AGAAGAAGAAGAAGGAACCA+CGG 0.661668 3_1:+87389316 None:intergenic
GAGTGGTGTGAAAAGTGAGA+GGG 0.666933 3_1:+87386952 None:intergenic
ACATTGCAGAAAACCCAACA+AGG 0.670424 3_1:-87387102 Msa0384340:CDS
AATGGTGAATGAGAGTTGGA+AGG 0.679457 3_1:-87389366 Msa0384340:CDS
CGAGTGCTCTTGAAGGATTG+TGG 0.681807 3_1:+87389687 None:intergenic
ACAGATCAATGGAATAACCA+TGG 0.682178 3_1:-87386743 Msa0384340:CDS
TTCTGTGATAGAGAAAGATG+TGG 0.682251 3_1:+87386982 None:intergenic
CTGTGATAGAGAAAGATGTG+GGG 0.685180 3_1:+87386984 None:intergenic
AATCTCCAACTTCACCGGCG+AGG 0.689245 3_1:-87389800 Msa0384340:CDS
AAAACAAGAGAATGAGCCTG+TGG 0.695424 3_1:-87386714 Msa0384340:CDS
GATGTGGGGATATCTGAGTG+AGG 0.723861 3_1:+87386998 None:intergenic
ATACACCTGGCATTCCAGGG+AGG 0.741719 3_1:+87390090 None:intergenic
GTAGAAGCGTTTGAACATGG+CGG 0.760919 3_1:+87387073 None:intergenic
AGTGTACTGTGTACACAACG+AGG 0.778628 3_1:+87390244 None:intergenic
GTACTGTGTACACAACGAGG+CGG 0.807010 3_1:+87390247 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATTTATTTATATAATAG+TGG + chr3_1:87386650-87386669 None:intergenic 10.0%
!!! TTATTTGTTTATTTGTTAAT+AGG - chr3_1:87387275-87387294 Msa0384340:intron 10.0%
!!! TTAAATTTATTGTTTTTTTG+TGG + chr3_1:87387630-87387649 None:intergenic 10.0%
!!! AAAAAAATTGTTATTTTGAT+AGG - chr3_1:87387723-87387742 Msa0384340:intron 10.0%
!! ATAATAAATTCCTTATTATT+TGG - chr3_1:87388064-87388083 Msa0384340:intron 10.0%
!!! AAGTTTTTTTTTATTAAGAA+AGG - chr3_1:87388275-87388294 Msa0384340:intron 10.0%
!! AGATAAAATAATATGACAAA+TGG + chr3_1:87387769-87387788 None:intergenic 15.0%
!!! TTTGTCATATTATTTTATCT+AGG - chr3_1:87387769-87387788 Msa0384340:intron 15.0%
!! CAGATAAAATAAATAGTATT+TGG - chr3_1:87388331-87388350 Msa0384340:intron 15.0%
!! ATAAAATAAATAGTATTTGG+TGG - chr3_1:87388334-87388353 Msa0384340:intron 15.0%
!!! CTTAAAGAAATTTTTTACTA+TGG + chr3_1:87388475-87388494 None:intergenic 15.0%
!!! ATAATTTTGAGACAAATTTT+TGG + chr3_1:87388623-87388642 None:intergenic 15.0%
!!! CAAATATCATTTTTATTTAC+AGG - chr3_1:87388647-87388666 Msa0384340:intron 15.0%
!! CATACTTTAATGTTATTATA+AGG - chr3_1:87389084-87389103 Msa0384340:intron 15.0%
!!! TTTTTTAAATTTTCTCAATC+AGG - chr3_1:87389474-87389493 Msa0384340:intron 15.0%
!! GATATTTATTTATATACACC+TGG + chr3_1:87386628-87386647 None:intergenic 20.0%
!!! TTTTGAGAGATAATTAAAGA+TGG + chr3_1:87387220-87387239 None:intergenic 20.0%
!!! TTGTTTATTTGTTAATAGGA+AGG - chr3_1:87387279-87387298 Msa0384340:intron 20.0%
!! TAGTAATTCATTTCCTATTT+GGG - chr3_1:87387502-87387521 Msa0384340:intron 20.0%
!!! TGTTTTTTTGTGGAAAATTA+AGG + chr3_1:87387620-87387639 None:intergenic 20.0%
!!! TCATTTGTTCTTTTTAATTG+TGG - chr3_1:87387668-87387687 Msa0384340:intron 20.0%
!!! TCTTTTTAATTGTGGTATTA+AGG - chr3_1:87387676-87387695 Msa0384340:intron 20.0%
!! CAAAACTGTGAATATTTATA+GGG + chr3_1:87388001-87388020 None:intergenic 20.0%
!! ACAAAACTGTGAATATTTAT+AGG + chr3_1:87388000-87388019 None:intergenic 20.0%
!!! GTCCTTATAAATTTTTTCAT+CGG - chr3_1:87387869-87387888 Msa0384340:intron 20.0%
!!! AAAATTTCCATCAAGATTTT+TGG - chr3_1:87387909-87387928 Msa0384340:intron 20.0%
!! ACAAAACTGTGAATATTTAT+AGG - chr3_1:87388000-87388019 Msa0384340:intron 20.0%
!! CAAAACTGTGAATATTTATA+GGG - chr3_1:87388001-87388020 Msa0384340:intron 20.0%
!! AGAGAGATAAATAGATAAAA+GGG + chr3_1:87388044-87388063 None:intergenic 20.0%
!! TAGAGAGATAAATAGATAAA+AGG + chr3_1:87388045-87388064 None:intergenic 20.0%
!! CTTCATTTATCCAAATAATA+AGG + chr3_1:87388077-87388096 None:intergenic 20.0%
!!! TTTTTTTTTCATCTTCCTTT+AGG - chr3_1:87388577-87388596 Msa0384340:intron 20.0%
!! AAATGAGAATAATATGATGA+GGG + chr3_1:87388713-87388732 None:intergenic 20.0%
!! TAAATGAGAATAATATGATG+AGG + chr3_1:87388714-87388733 None:intergenic 20.0%
!!! GGTTAATGCTTATTAATTTT+TGG - chr3_1:87388926-87388945 Msa0384340:intron 20.0%
!!! AAAACTTTTCTAGATTATCA+TGG + chr3_1:87388972-87388991 None:intergenic 20.0%
!! TCAAAGATCTTTATTAATCA+TGG - chr3_1:87388996-87389015 Msa0384340:intron 20.0%
!! AATCTTGAAAAAACAACTAA+TGG + chr3_1:87389557-87389576 None:intergenic 20.0%
! ATCATACTCATTGGAAAAAA+AGG - chr3_1:87386379-87386398 Msa0384340:three_prime_UTR 25.0%
!! TTATTGTTATTGCTAACACA+GGG + chr3_1:87386507-87386526 None:intergenic 25.0%
! CTAGTAATTCATTTCCTATT+TGG - chr3_1:87387501-87387520 Msa0384340:intron 25.0%
! TGCCGATGAAAAAATTTATA+AGG + chr3_1:87387874-87387893 None:intergenic 25.0%
!!! TTGATGGAAATTTTTGATTG+GGG + chr3_1:87387903-87387922 None:intergenic 25.0%
!!! CTTGATGGAAATTTTTGATT+GGG + chr3_1:87387904-87387923 None:intergenic 25.0%
!! TCTTGATGGAAATTTTTGAT+TGG + chr3_1:87387905-87387924 None:intergenic 25.0%
!! ATTTTCCTTAAGCACTTTTA+AGG + chr3_1:87387936-87387955 None:intergenic 25.0%
!!! TCATTTTTATTTACAGGTTG+AGG - chr3_1:87388653-87388672 Msa0384340:intron 25.0%
!!! CATTTTTATTTACAGGTTGA+GGG - chr3_1:87388654-87388673 Msa0384340:intron 25.0%
!!! ATTTCATTTTTGTGTTGTCT+CGG + chr3_1:87388685-87388704 None:intergenic 25.0%
! CAAAGTCCTTATACTATATT+TGG + chr3_1:87389149-87389168 None:intergenic 25.0%
!!! CAATTGTCACTTTATAACAA+GGG + chr3_1:87389277-87389296 None:intergenic 25.0%
!!! TCAATTGTCACTTTATAACA+AGG + chr3_1:87389278-87389297 None:intergenic 25.0%
! AGCAAAACAAAAAAATTCCT+GGG + chr3_1:87390225-87390244 None:intergenic 25.0%
! AAGCAAAACAAAAAAATTCC+TGG + chr3_1:87390226-87390245 None:intergenic 25.0%
! CCAAAAATAAAAAAGAGAGT+TGG + chr3_1:87390270-87390289 None:intergenic 25.0%
!!! CCAACTCTCTTTTTTATTTT+TGG - chr3_1:87390267-87390286 Msa0384340:five_prime_UTR 25.0%
!!! ACTCTCTTTTTTATTTTTGG+AGG - chr3_1:87390270-87390289 Msa0384340:five_prime_UTR 25.0%
!!! CTCTCTTTTTTATTTTTGGA+GGG - chr3_1:87390271-87390290 Msa0384340:five_prime_UTR 25.0%
! ATCGAATCAATATCATTTAC+TGG + chr3_1:87390345-87390364 None:intergenic 25.0%
! TGATATGATGAGGAGTATAT+TGG + chr3_1:87386363-87386382 None:intergenic 30.0%
! GTTATTGTTATTGCTAACAC+AGG + chr3_1:87386508-87386527 None:intergenic 30.0%
! TTGGTTGCTAGTAAAGTTTT+GGG + chr3_1:87386836-87386855 None:intergenic 30.0%
AAAGTTCATATGAAGAGTTG+TGG - chr3_1:87387139-87387158 Msa0384340:intron 30.0%
! AGAGAGTATAAATGTGATTG+TGG - chr3_1:87387166-87387185 Msa0384340:intron 30.0%
! ATAATTTTGTTACGCACAGA+AGG - chr3_1:87387302-87387321 Msa0384340:intron 30.0%
ATCACTGATGATATTGTTGA+TGG + chr3_1:87387436-87387455 None:intergenic 30.0%
ATCAACAATATCATCAGTGA+TGG - chr3_1:87387435-87387454 Msa0384340:intron 30.0%
! AATGTTTTCCAAAACAAAGG+CGG + chr3_1:87387559-87387578 None:intergenic 30.0%
! ACGAATGTTTTCCAAAACAA+AGG + chr3_1:87387562-87387581 None:intergenic 30.0%
TTGCAATTGCAAATTGATAG+TGG + chr3_1:87387585-87387604 None:intergenic 30.0%
ACTATCAATTTGCAATTGCA+AGG - chr3_1:87387584-87387603 Msa0384340:intron 30.0%
CTATCAATTTGCAATTGCAA+GGG - chr3_1:87387585-87387604 Msa0384340:intron 30.0%
! TGCTGACGGAAAATTTTATA+GGG + chr3_1:87387843-87387862 None:intergenic 30.0%
! ATGCTGACGGAAAATTTTAT+AGG + chr3_1:87387844-87387863 None:intergenic 30.0%
ATAAGGACTAAAAATGCTGA+CGG + chr3_1:87387857-87387876 None:intergenic 30.0%
TTAAGGACCAAAAATCTTGA+TGG + chr3_1:87387919-87387938 None:intergenic 30.0%
TGACCATATAAGAATGTGTT+CGG + chr3_1:87388311-87388330 None:intergenic 30.0%
TCTCGCATATTATAACCTAA+AGG + chr3_1:87388595-87388614 None:intergenic 30.0%
CACTTGTAAATTTACTTGTG+TGG - chr3_1:87388905-87388924 Msa0384340:intron 30.0%
AGGGAACCAAATATAGTATA+AGG - chr3_1:87389140-87389159 Msa0384340:intron 30.0%
ACAATTGATCCTAAATGAAC+AGG - chr3_1:87389290-87389309 Msa0384340:CDS 30.0%
CAATTGATCCTAAATGAACA+GGG - chr3_1:87389291-87389310 Msa0384340:CDS 30.0%
AGTCAAAAGGGGAAAATAAT+AGG - chr3_1:87389325-87389344 Msa0384340:CDS 30.0%
AAAAGGGGAAAATAATAGGA+AGG - chr3_1:87389329-87389348 Msa0384340:CDS 30.0%
ATTGAATGCATAGAGCAAAA+CGG + chr3_1:87389375-87389394 None:intergenic 30.0%
! GTGATCATTGTTGTTGTTAT+TGG + chr3_1:87389783-87389802 None:intergenic 30.0%
TAGACAAGAGTTTAGAAAAC+TGG - chr3_1:87390175-87390194 Msa0384340:exon 30.0%
GCAAAACAAAAAAATTCCTG+GGG + chr3_1:87390224-87390243 None:intergenic 30.0%
!!! TTTTGTTTTGCTTTTGTGAC+TGG - chr3_1:87390233-87390252 Msa0384340:five_prime_UTR 30.0%
AGAATATAGAACAAGAGAGT+TGG + chr3_1:87390303-87390322 None:intergenic 30.0%
CTCTCTTGTTCTATATTCTT+TGG - chr3_1:87390304-87390323 Msa0384340:five_prime_UTR 30.0%
CCAATGAGTATGATATGATG+AGG + chr3_1:87386373-87386392 None:intergenic 35.0%
CCTCATCATATCATACTCAT+TGG - chr3_1:87386370-87386389 Msa0384340:three_prime_UTR 35.0%
TACTTACTAGAGAAGGAAGA+GGG + chr3_1:87386427-87386446 None:intergenic 35.0%
ATACTTACTAGAGAAGGAAG+AGG + chr3_1:87386428-87386447 None:intergenic 35.0%
GGACAAATACTTACTAGAGA+AGG + chr3_1:87386434-87386453 None:intergenic 35.0%
!!! GTAGTATTTTTCTGAGGTTC+TGG + chr3_1:87386538-87386557 None:intergenic 35.0%
! GGTGAAGTAGTATTTTTCTG+AGG + chr3_1:87386544-87386563 None:intergenic 35.0%
!!! AGGTTTCGCTTCTTTTTTGA+CGG + chr3_1:87386595-87386614 None:intergenic 35.0%
! GTTGGTTGCTAGTAAAGTTT+TGG + chr3_1:87386837-87386856 None:intergenic 35.0%
TACAGATCTCGCATATGAAA+CGG + chr3_1:87386859-87386878 None:intergenic 35.0%
ATATGCGAGATCTGTAACAA+AGG - chr3_1:87386863-87386882 Msa0384340:CDS 35.0%
TCTGTAACAAAGGATTCCAA+CGG - chr3_1:87386873-87386892 Msa0384340:CDS 35.0%
! AAGCACTTTTGTAGAAAGCA+CGG - chr3_1:87387058-87387077 Msa0384340:CDS 35.0%
! CAAAAGTGCAAAACCCAAAT+AGG + chr3_1:87387518-87387537 None:intergenic 35.0%
! ATGTTTTCCAAAACAAAGGC+GGG + chr3_1:87387558-87387577 None:intergenic 35.0%
!! TTGGTCCTTAAAAGTGCTTA+AGG - chr3_1:87387928-87387947 Msa0384340:intron 35.0%
TGCTTAAGGAAAATGTCACA+GGG - chr3_1:87387942-87387961 Msa0384340:intron 35.0%
TAGTAATGCAGCTCACATTA+TGG - chr3_1:87388180-87388199 Msa0384340:intron 35.0%
AAGCCGAACACATTCTTATA+TGG - chr3_1:87388305-87388324 Msa0384340:intron 35.0%
GATTATCATGGAAGAATTGC+AGG + chr3_1:87388960-87388979 None:intergenic 35.0%
TTGAATGCATAGAGCAAAAC+GGG + chr3_1:87389374-87389393 None:intergenic 35.0%
TCTGTGATAGAGAAAGATGT+GGG + chr3_1:87389722-87389741 None:intergenic 35.0%
TTCTGTGATAGAGAAAGATG+TGG + chr3_1:87389723-87389742 None:intergenic 35.0%
! TTGTTATTGGAGAGATAGAG+TGG + chr3_1:87389770-87389789 None:intergenic 35.0%
!! CAGTTTTGTAATGGGGAAAA+GGG + chr3_1:87389805-87389824 None:intergenic 35.0%
!! TGGAGATGCAGTTTTGTAAT+GGG + chr3_1:87389813-87389832 None:intergenic 35.0%
AATGCAGTAGCAGATAATAC+AGG + chr3_1:87389839-87389858 None:intergenic 35.0%
GTTATTCCATTGATCTGTTG+TGG + chr3_1:87389957-87389976 None:intergenic 35.0%
ACAGATCAATGGAATAACCA+TGG - chr3_1:87389959-87389978 Msa0384340:intron 35.0%
!!! TCTCTTGTTTTACATGACCA+TGG + chr3_1:87389979-87389998 None:intergenic 35.0%
TTCTAAACTCTTGTCTATGC+AGG + chr3_1:87390172-87390191 None:intergenic 35.0%
AACAAAAAAATTCCTGGGGT+GGG + chr3_1:87390220-87390239 None:intergenic 35.0%
AAACAAAAAAATTCCTGGGG+TGG + chr3_1:87390221-87390240 None:intergenic 35.0%
! TGAGGAGTATATTGGACAAG+AGG + chr3_1:87386355-87386374 None:intergenic 40.0%
! CTAACACAGGGATCAAGTTT+TGG + chr3_1:87386495-87386514 None:intergenic 40.0%
!!! TTTCGCTTCTTTTTTGACGG+TGG + chr3_1:87386592-87386611 None:intergenic 40.0%
TATATACACCTGGCATTCCA+GGG + chr3_1:87386618-87386637 None:intergenic 40.0%
TTATATACACCTGGCATTCC+AGG + chr3_1:87386619-87386638 None:intergenic 40.0%
CTGTAACAAAGGATTCCAAC+GGG - chr3_1:87386874-87386893 Msa0384340:CDS 40.0%
AACAGAATCTCCAACTTCAC+CGG - chr3_1:87386897-87386916 Msa0384340:CDS 40.0%
GACAAACGTACACTTTCTTG+CGG + chr3_1:87386976-87386995 None:intergenic 40.0%
! ATTGTGGCACTGTGTTTTCT+AGG - chr3_1:87387182-87387201 Msa0384340:intron 40.0%
ATGGAATGGTGAATGAGAGT+TGG - chr3_1:87387332-87387351 Msa0384340:intron 40.0%
AATGGTGAATGAGAGTTGGA+AGG - chr3_1:87387336-87387355 Msa0384340:intron 40.0%
AGAAGAAGAAGAAGGAACCA+CGG + chr3_1:87387389-87387408 None:intergenic 40.0%
TCCTTCTTCTTCTTCTTCAC+CGG - chr3_1:87387393-87387412 Msa0384340:intron 40.0%
! GATATTGTTGATGGAGTGAG+TGG + chr3_1:87387427-87387446 None:intergenic 40.0%
!! GGTTTTGCACTTTTGTTTCC+TGG - chr3_1:87387523-87387542 Msa0384340:intron 40.0%
GTGCTTAAGGAAAATGTCAC+AGG - chr3_1:87387941-87387960 Msa0384340:intron 40.0%
TTGTTTCCTTAACTAGTGCC+CGG - chr3_1:87389234-87389253 Msa0384340:CDS 40.0%
TGATCCTAAATGAACAGGGA+AGG - chr3_1:87389295-87389314 Msa0384340:CDS 40.0%
GAAGGCAGTGTAAGTCAAAA+GGG - chr3_1:87389313-87389332 Msa0384340:CDS 40.0%
AAGGCAGTGTAAGTCAAAAG+GGG - chr3_1:87389314-87389333 Msa0384340:CDS 40.0%
TGAAACAGTGAAACACAAGG+GGG + chr3_1:87389426-87389445 None:intergenic 40.0%
CTGAAACAGTGAAACACAAG+GGG + chr3_1:87389427-87389446 None:intergenic 40.0%
CCTGAAACAGTGAAACACAA+GGG + chr3_1:87389428-87389447 None:intergenic 40.0%
ACCTGAAACAGTGAAACACA+AGG + chr3_1:87389429-87389448 None:intergenic 40.0%
ACATTGCAGAAAACCCAACA+AGG - chr3_1:87389600-87389619 Msa0384340:CDS 40.0%
!! GAAGTAGAAGCGTTTGAACA+TGG + chr3_1:87389635-87389654 None:intergenic 40.0%
CTGTGATAGAGAAAGATGTG+GGG + chr3_1:87389721-87389740 None:intergenic 40.0%
!! GCAGTTTTGTAATGGGGAAA+AGG + chr3_1:87389806-87389825 None:intergenic 40.0%
!! GGAGATGCAGTTTTGTAATG+GGG + chr3_1:87389812-87389831 None:intergenic 40.0%
!! GTGGAGATGCAGTTTTGTAA+TGG + chr3_1:87389814-87389833 None:intergenic 40.0%
GTAGCAGATAATACAGGTTG+TGG + chr3_1:87389833-87389852 None:intergenic 40.0%
AAAACAAGAGAATGAGCCTG+TGG - chr3_1:87389988-87390007 Msa0384340:intron 40.0%
! TCTGCTTTGCTCACATCTTT+TGG - chr3_1:87390130-87390149 Msa0384340:CDS 40.0%
! CTTTGCTCACATCTTTTGGA+GGG - chr3_1:87390134-87390153 Msa0384340:CDS 40.0%
CTGGAAACAACTAGTTGTAC+TGG - chr3_1:87390194-87390213 Msa0384340:five_prime_UTR 40.0%
AGTGTACTGTGTACACAACG+AGG + chr3_1:87386461-87386480 None:intergenic 45.0%
! GTAGTAGAAAGTGGCATTGG+TGG + chr3_1:87386565-87386584 None:intergenic 45.0%
GGTGTAGTAGAAAGTGGCAT+TGG + chr3_1:87386568-87386587 None:intergenic 45.0%
AAAAAGAAGCGAAACCTCCC+TGG - chr3_1:87386598-87386617 Msa0384340:CDS 45.0%
AAAGCGATTACTTCAGCGTC+TGG + chr3_1:87386809-87386828 None:intergenic 45.0%
GATCTCGCATATGAAACGGT+TGG + chr3_1:87386855-87386874 None:intergenic 45.0%
AAACGTACACTTTCTTGCGG+AGG + chr3_1:87386973-87386992 None:intergenic 45.0%
!! CACAATCCTTCAAGAGCACT+CGG - chr3_1:87387016-87387035 Msa0384340:CDS 45.0%
!!! AGTGCTTTTTCACTCCTGTG+AGG + chr3_1:87387045-87387064 None:intergenic 45.0%
! GAAAGCACGGTGAGAAGAAA+TGG - chr3_1:87387071-87387090 Msa0384340:CDS 45.0%
GTGAATGAGAGTTGGAAGGA+GGG - chr3_1:87387340-87387359 Msa0384340:intron 45.0%
! ATTGTTGATGGAGTGAGTGG+TGG + chr3_1:87387424-87387443 None:intergenic 45.0%
CACTGAGTAGACGACAAAGT+AGG + chr3_1:87387466-87387485 None:intergenic 45.0%
!! TCTCAAACCCGCCTTTGTTT+TGG - chr3_1:87387548-87387567 Msa0384340:intron 45.0%
TGAGCTGCATTACTACTCAG+CGG + chr3_1:87388175-87388194 None:intergenic 45.0%
ATCCTCTCACACGATGACAA+TGG - chr3_1:87388203-87388222 Msa0384340:intron 45.0%
TCCTCTCACACGATGACAAT+GGG - chr3_1:87388204-87388223 Msa0384340:intron 45.0%
AAAATGTTAACGAGTGCCCC+CGG - chr3_1:87389107-87389126 Msa0384340:intron 45.0%
TGTTTCCTTAACTAGTGCCC+GGG - chr3_1:87389235-87389254 Msa0384340:CDS 45.0%
! GTCTTGTTAACTAATGCCCC+GGG + chr3_1:87389255-87389274 None:intergenic 45.0%
!! GGTCTTGTTAACTAATGCCC+CGG + chr3_1:87389256-87389275 None:intergenic 45.0%
ACTGCCTTCCCTGTTCATTT+AGG + chr3_1:87389302-87389321 None:intergenic 45.0%
GGAAGGCAGTGTAAGTCAAA+AGG - chr3_1:87389312-87389331 Msa0384340:CDS 45.0%
CACAAGGGGGAAAAAAGCTT+GGG + chr3_1:87389413-87389432 None:intergenic 45.0%
ACACAAGGGGGAAAAAAGCT+TGG + chr3_1:87389414-87389433 None:intergenic 45.0%
CCCTTGTGTTTCACTGTTTC+AGG - chr3_1:87389425-87389444 Msa0384340:intron 45.0%
!! GTAGAAGCGTTTGAACATGG+CGG + chr3_1:87389632-87389651 None:intergenic 45.0%
GTGAAAAGTGAGAGGGTTGT+GGG + chr3_1:87389746-87389765 None:intergenic 45.0%
TGTGAAAAGTGAGAGGGTTG+TGG + chr3_1:87389747-87389766 None:intergenic 45.0%
GAGTGGTGTGAAAAGTGAGA+GGG + chr3_1:87389753-87389772 None:intergenic 45.0%
AGAGTGGTGTGAAAAGTGAG+AGG + chr3_1:87389754-87389773 None:intergenic 45.0%
ACTCCAAAAAGCTGCTCAAG+TGG - chr3_1:87389859-87389878 Msa0384340:CDS 45.0%
CTCCAAAAAGCTGCTCAAGT+GGG - chr3_1:87389860-87389879 Msa0384340:CDS 45.0%
! AACCCACTTGAGCAGCTTTT+TGG + chr3_1:87389865-87389884 None:intergenic 45.0%
AGCCTGTGGCAGATTATCTT+GGG - chr3_1:87390002-87390021 Msa0384340:intron 45.0%
TGCTAAGACCGAGAAGATCA+CGG + chr3_1:87390081-87390100 None:intergenic 45.0%
TGATCTTCTCGGTCTTAGCA+TGG - chr3_1:87390081-87390100 Msa0384340:intron 45.0%
GATCTTCTCGGTCTTAGCAT+GGG - chr3_1:87390082-87390101 Msa0384340:intron 45.0%
! GCTTTGCTCACATCTTTTGG+AGG - chr3_1:87390133-87390152 Msa0384340:CDS 45.0%
!!! AAAATATGATTTTATTTTAT+AGG - chr3_1:87387970-87387989 Msa0384340:intron 5.0%
!!! AAATATGATTTTATTTTATA+GGG - chr3_1:87387971-87387990 Msa0384340:intron 5.0%
GTACTGTGTACACAACGAGG+CGG + chr3_1:87386458-87386477 None:intergenic 50.0%
!!! CGCTTCTTTTTTGACGGTGG+CGG + chr3_1:87386589-87386608 None:intergenic 50.0%
TCAGCGTCTGGATCTGCAAA+CGG + chr3_1:87386797-87386816 None:intergenic 50.0%
GTTGGAGATTCTGTTCCCGT+TGG + chr3_1:87386892-87386911 None:intergenic 50.0%
TGAAGGATTGTGGTGAACGC+AGG + chr3_1:87387008-87387027 None:intergenic 50.0%
CGAGTGCTCTTGAAGGATTG+TGG + chr3_1:87387018-87387037 None:intergenic 50.0%
CAGAAGGTTCTGCGATGGAA+TGG - chr3_1:87387318-87387337 Msa0384340:intron 50.0%
GGTGAATGAGAGTTGGAAGG+AGG - chr3_1:87387339-87387358 Msa0384340:intron 50.0%
AATGAGAGTTGGAAGGAGGG+TGG - chr3_1:87387343-87387362 Msa0384340:intron 50.0%
TAGCAATAACGCTGTTGCCG+TGG - chr3_1:87387369-87387388 Msa0384340:intron 50.0%
GCCGGTGAAGAAGAAGAAGA+AGG + chr3_1:87387397-87387416 None:intergenic 50.0%
TTGTCGTCTACTCAGTGCTC+AGG - chr3_1:87387469-87387488 Msa0384340:intron 50.0%
! AAAGGCGGGTTTGAGATACC+AGG + chr3_1:87387544-87387563 None:intergenic 50.0%
TCCCATTGTCATCGTGTGAG+AGG + chr3_1:87388208-87388227 None:intergenic 50.0%
TGGTTCCCTTAACGAGTGTC+CGG + chr3_1:87389129-87389148 None:intergenic 50.0%
GTTTCCTTAACTAGTGCCCG+GGG - chr3_1:87389236-87389255 Msa0384340:CDS 50.0%
GGGAAAAAAGCTTGGGAGTG+GGG + chr3_1:87389406-87389425 None:intergenic 50.0%
GGGGAAAAAAGCTTGGGAGT+GGG + chr3_1:87389407-87389426 None:intergenic 50.0%
GATGTGGGGATATCTGAGTG+AGG + chr3_1:87389707-87389726 None:intergenic 50.0%
AGCACGAAGCAAGGATGCAT+TGG + chr3_1:87389897-87389916 None:intergenic 50.0%
GCATCCTTGCTTCGTGCTTT+AGG - chr3_1:87389899-87389918 Msa0384340:CDS 50.0%
CAAGCCTAAAGCACGAAGCA+AGG + chr3_1:87389906-87389925 None:intergenic 50.0%
GCAGCACCACAACAGATCAA+TGG - chr3_1:87389948-87389967 Msa0384340:intron 50.0%
GAGCCTGTGGCAGATTATCT+TGG - chr3_1:87390001-87390020 Msa0384340:intron 50.0%
AGCCCAAGATAATCTGCCAC+AGG + chr3_1:87390007-87390026 None:intergenic 50.0%
GTGGCAGATTATCTTGGGCT+TGG - chr3_1:87390007-87390026 Msa0384340:intron 50.0%
ACTTCCCTGTGGGAATGAGA+CGG - chr3_1:87390030-87390049 Msa0384340:intron 50.0%
GCTAAGACCGAGAAGATCAC+GGG + chr3_1:87390080-87390099 None:intergenic 50.0%
TCTCGGTCTTAGCATGGGAT+TGG - chr3_1:87390087-87390106 Msa0384340:intron 50.0%
CTCGGTCTTAGCATGGGATT+GGG - chr3_1:87390088-87390107 Msa0384340:intron 50.0%
TAGCATGGGATTGGGTAGAG+AGG - chr3_1:87390096-87390115 Msa0384340:CDS 50.0%
! GGTGGCGGTGTAGTAGAAAG+TGG + chr3_1:87386574-87386593 None:intergenic 55.0%
ATACACCTGGCATTCCAGGG+AGG + chr3_1:87386615-87386634 None:intergenic 55.0%
AATCTCCAACTTCACCGGCG+AGG - chr3_1:87386902-87386921 Msa0384340:CDS 55.0%
ACAACATGCCGTGGAAGCTC+CGG - chr3_1:87386927-87386946 Msa0384340:CDS 55.0%
TTTCGTCGTTCGCTCGCTTC+CGG + chr3_1:87386949-87386968 None:intergenic 55.0%
GGATTGTGGTGAACGCAGGA+AGG + chr3_1:87387004-87387023 None:intergenic 55.0%
AGGTCACCGAGTGCTCTTGA+AGG + chr3_1:87387025-87387044 None:intergenic 55.0%
ACGCACAGAAGGTTCTGCGA+TGG - chr3_1:87387313-87387332 Msa0384340:intron 55.0%
TGGGACAGTGTGAGTCTCTG+TGG - chr3_1:87388223-87388242 Msa0384340:intron 55.0%
GGGACAGTGTGAGTCTCTGT+GGG - chr3_1:87388224-87388243 Msa0384340:intron 55.0%
CAGTGTGAGTCTCTGTGGGA+AGG - chr3_1:87388228-87388247 Msa0384340:intron 55.0%
TTCCCTTAACGAGTGTCCGG+GGG + chr3_1:87389126-87389145 None:intergenic 55.0%
GTTCCCTTAACGAGTGTCCG+GGG + chr3_1:87389127-87389146 None:intergenic 55.0%
GGTTCCCTTAACGAGTGTCC+GGG + chr3_1:87389128-87389147 None:intergenic 55.0%
AATGCCCCGGGCACTAGTTA+AGG + chr3_1:87389243-87389262 None:intergenic 55.0%
GGGGGAAAAAAGCTTGGGAG+TGG + chr3_1:87389408-87389427 None:intergenic 55.0%
!! ATGGCGGTGACAGCCTTGTT+GGG + chr3_1:87389616-87389635 None:intergenic 55.0%
TTGGGCTTGGACTTCCCTGT+GGG - chr3_1:87390020-87390039 Msa0384340:intron 55.0%
CTTCCCTGTGGGAATGAGAC+GGG - chr3_1:87390031-87390050 Msa0384340:intron 55.0%
TTCCCTGTGGGAATGAGACG+GGG - chr3_1:87390032-87390051 Msa0384340:intron 55.0%
CCGAGAAGATCACGGGTCAT+GGG + chr3_1:87390073-87390092 None:intergenic 55.0%
CCCATGACCCGTGATCTTCT+CGG - chr3_1:87390070-87390089 Msa0384340:intron 55.0%
ACCGAGAAGATCACGGGTCA+TGG + chr3_1:87390074-87390093 None:intergenic 55.0%
CTGTGTACACAACGAGGCGG+CGG + chr3_1:87386455-87386474 None:intergenic 60.0%
CGAAACCTCCCTGGAATGCC+AGG - chr3_1:87386607-87386626 Msa0384340:CDS 60.0%
TGTGTCCTCGCCGGTGAAGT+TGG + chr3_1:87386910-87386929 None:intergenic 60.0%
ACGGCATGTTGTGTCCTCGC+CGG + chr3_1:87386919-87386938 None:intergenic 60.0%
TGGTGAACGCAGGAAGGCTC+AGG + chr3_1:87386998-87387017 None:intergenic 60.0%
! AGAGCACTCGGTGACCTCAC+AGG - chr3_1:87387028-87387047 Msa0384340:CDS 60.0%
TGCCCCCGGACACTCGTTAA+GGG - chr3_1:87389121-87389140 Msa0384340:intron 60.0%
! CATGGCGGTGACAGCCTTGT+TGG + chr3_1:87389617-87389636 None:intergenic 60.0%
CTTGGGCTTGGACTTCCCTG+TGG - chr3_1:87390019-87390038 Msa0384340:intron 60.0%
TCCCTGTGGGAATGAGACGG+GGG - chr3_1:87390033-87390052 Msa0384340:intron 60.0%
GAAGATCACGGGTCATGGGC+TGG + chr3_1:87390069-87390088 None:intergenic 60.0%
! TAGTTGTACTGGCCCACCCC+AGG - chr3_1:87390205-87390224 Msa0384340:five_prime_UTR 60.0%
GGCGAGGACACAACATGCCG+TGG - chr3_1:87386918-87386937 Msa0384340:CDS 65.0%
GCTCGCTTCCGGAGCTTCCA+CGG + chr3_1:87386938-87386957 None:intergenic 65.0%
! GGAGTGAGTGGTGGCGTAGC+CGG + chr3_1:87387415-87387434 None:intergenic 65.0%
GTGCCCCCGGACACTCGTTA+AGG - chr3_1:87389120-87389139 Msa0384340:intron 65.0%
CCCCCCGTCTCATTCCCACA+GGG + chr3_1:87390037-87390056 None:intergenic 65.0%
CCCTGTGGGAATGAGACGGG+GGG - chr3_1:87390034-87390053 Msa0384340:intron 65.0%
GCCCCCCGTCTCATTCCCAC+AGG + chr3_1:87390038-87390057 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 87386342 87390382 87386342 ID=Msa0384340;Name=Msa0384340
chr3_1 mRNA 87386342 87390382 87386342 ID=Msa0384340-mRNA-1;Parent=Msa0384340;Name=Msa0384340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=190|1|1|1|1|1|4|205|422
chr3_1 exon 87386342 87387124 87386342 ID=Msa0384340-mRNA-1:exon:23419;Parent=Msa0384340-mRNA-1
chr3_1 exon 87389234 87389427 87389234 ID=Msa0384340-mRNA-1:exon:23418;Parent=Msa0384340-mRNA-1
chr3_1 exon 87389521 87389920 87389521 ID=Msa0384340-mRNA-1:exon:23417;Parent=Msa0384340-mRNA-1
chr3_1 exon 87390096 87390382 87390096 ID=Msa0384340-mRNA-1:exon:23416;Parent=Msa0384340-mRNA-1
chr3_1 five_prime_UTR 87390193 87390382 87390193 ID=Msa0384340-mRNA-1:five_prime_utr;Parent=Msa0384340-mRNA-1
chr3_1 CDS 87390096 87390192 87390096 ID=Msa0384340-mRNA-1:cds;Parent=Msa0384340-mRNA-1
chr3_1 CDS 87389521 87389920 87389521 ID=Msa0384340-mRNA-1:cds;Parent=Msa0384340-mRNA-1
chr3_1 CDS 87389234 87389427 87389234 ID=Msa0384340-mRNA-1:cds;Parent=Msa0384340-mRNA-1
chr3_1 CDS 87386547 87387124 87386547 ID=Msa0384340-mRNA-1:cds;Parent=Msa0384340-mRNA-1
chr3_1 three_prime_UTR 87386342 87386546 87386342 ID=Msa0384340-mRNA-1:three_prime_utr;Parent=Msa0384340-mRNA-1
Gene Sequence

>Msa0384340

ATGCCAGAACCTCAGAAAAATACTACTTCACCACCAATGCCACTTTCTACTACACCGCCACCGTCAAAAAAGAAGCGAAACCTCCCTGGAATGCCAGATCCAGACGCTGAAGTAATCGCTTTATCACCCAAAACTTTACTAGCAACCAACCGTTTCATATGCGAGATCTGTAACAAAGGATTCCAACGGGAACAGAATCTCCAACTTCACCGGCGAGGACACAACATGCCGTGGAAGCTCCGGAAGCGAGCGAACGACGAAATCCTCCGCAAGAAAGTGTACGTTTGTCCTGAGCCTTCCTGCGTTCACCACAATCCTTCAAGAGCACTCGGTGACCTCACAGGAGTGAAAAAGCACTTTTGTAGAAAGCACGGTGAGAAGAAATGGAAATGTGAACGTTGTTCTAAAAAATACGCTGCGAAATGTGATTTGAAAGTTCATATGAAGAGTTGTGGAACTAGAGAGTATAAATGTGATTGTGGCACTGTGTTTTCTAGGAAGGATAATTTTGTTACGCACAGAAGGTTCTGCGATGGAATGGTGAATGAGAGTTGGAAGGAGGGTGGTAGTAGCAATAACGCTGTTGCCGTGGTTCCTTCTTCTTCTTCTTCACCGGCTACGCCACCACTCACTCCATCAACAATATCATCAGTGATGGTGTCTCCTACTTTGTCGTCTACTCAGTGCTCAGACATTGCAGAAAACCCAACAAGGCTGTCACCGCCATGTTCAAACGCTTCTACTTCTACTTCTACTAGCTGTTGTTCTTCTTTCAGCAGTCTCATGTCAAGCTTGCCTCACTCAGATATCCCCACATCTTTCTCTATCACAGAACCCACAACCCTCTCACTTTTCACACCACTCTATCTCTCCAATAACAACAACAATGATCACCCTTTTCCCCATTACAAAACTGCATCTCCACAACCTGTATTATCTGCTACTGCATTACTCCAAAAAGCTGCTCAAGTGGGTTCATCTTCATCCAATGCATCCTTGCTTCGTGCTTTAGGCTTGAAAGACAACAGTGTCAGTATTAGCAGCACCACAACAGATCAATGGAATAACCATGGTCATGTAAAACAAGAGAATGAGCCTGTGGCAGATTATCTTGGGCTTGGACTTCCCTGTGGGAATGAGACGGGGGGCTCATCGAACCAGCCCATGACCCGTGATCTTCTCGGTCTTAGCATGGGATTGGGTAGAGAGGATGATGATCTTTCTGCTTTGCTCACATCTTTTGGAGGGAACTTCGATTCACCTGCATAG
Protein sequence

>Msa0384340

MPEPQKNTTSPPMPLSTTPPPSKKKRNLPGMPDPDAEVIALSPKTLLATNRFICEICNKGFQREQNLQLHRRGHNMPWKLRKRANDEILRKKVYVCPEPSCVHHNPSRALGDLTGVKKHFCRKHGEKKWKCERCSKKYAAKCDLKVHMKSCGTREYKCDCGTVFSRKDNFVTHRRFCDGMVNESWKEGGSSNNAVAVVPSSSSSPATPPLTPSTISSVMVSPTLSSTQCSDIAENPTRLSPPCSNASTSTSTSCCSSFSSLMSSLPHSDIPTSFSITEPTTLSLFTPLYLSNNNNNDHPFPHYKTASPQPVLSATALLQKAAQVGSSSSNASLLRALGLKDNSVSISSTTTDQWNNHGHVKQENEPVADYLGLGLPCGNETGGSSNQPMTRDLLGLSMGLGREDDDLSALLTSFGGNFDSPA*