Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522890 | XP_003603813.1 | 98.980 | 490 | 5 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1002 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522890 | sp|P93768|PSMD3_TOBAC | 85.743 | 491 | 66 | 2 | 1 | 490 | 1 | 488 | 0.0 | 826 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522890 | G7J5U6 | 98.980 | 490 | 5 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1002 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0479620 | Msa0522890 | 0.956113 | 6.328226e-114 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522890 | MtrunA17_Chr3g0143291 | 98.980 | 490 | 5 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1002 |
| Msa0522890 | MtrunA17_Chr1g0157071 | 85.567 | 485 | 56 | 5 | 1 | 482 | 1 | 474 | 0.0 | 792 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522890 | AT1G20200.1 | 82.653 | 490 | 83 | 1 | 1 | 490 | 1 | 488 | 0.0 | 810 |
| Msa0522890 | AT1G75990.1 | 81.633 | 490 | 87 | 1 | 1 | 490 | 1 | 487 | 0.0 | 785 |
Find 124 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGTCTTCTTCACTTGTT+AGG | 0.185790 | 3_4:+76245805 | Msa0522890:five_prime_UTR |
| TGAACGAAATTGAGCCAAAT+TGG | 0.232237 | 3_4:-76245860 | None:intergenic |
| TGACTTGTTATTGAATATTA+TGG | 0.258695 | 3_4:-76250765 | None:intergenic |
| TGGAGATCTGGCTGAAATTC+GGG | 0.287672 | 3_4:+76247521 | Msa0522890:CDS |
| GGCTGTCCGCATTGGAGATT+TGG | 0.288995 | 3_4:+76249838 | Msa0522890:intron |
| TTGGAGATTTGGAGCTGTTT+AGG | 0.292663 | 3_4:+76249849 | Msa0522890:CDS |
| CTCGATCATGTTCTCACTCC+TGG | 0.302582 | 3_4:+76246176 | Msa0522890:CDS |
| TCATATAGCCATGAACTTAC+TGG | 0.313557 | 3_4:+76247501 | Msa0522890:CDS |
| GAGCTTTACGAGCAGCTTGC+AGG | 0.339070 | 3_4:-76248193 | None:intergenic |
| CTGGAGATCTGGCTGAAATT+CGG | 0.352735 | 3_4:+76247520 | Msa0522890:CDS |
| CCAGATCTCCAGTAAGTTCA+TGG | 0.361028 | 3_4:-76247509 | None:intergenic |
| CGAAAACCCCGAGCTGCAAC+TGG | 0.373967 | 3_4:-76248215 | None:intergenic |
| CTAATGGAAGTTCTTCATAA+TGG | 0.374767 | 3_4:-76250421 | None:intergenic |
| GAAAATTCGGACTATTCAAT+TGG | 0.381260 | 3_4:+76248145 | Msa0522890:CDS |
| TCAGCATCAGCAACAGGATT+TGG | 0.384636 | 3_4:-76250034 | None:intergenic |
| TCTTCTACCTCGGGAAAATT+CGG | 0.396222 | 3_4:+76248132 | Msa0522890:CDS |
| TGACCACGTTGCTTCTTGTT+TGG | 0.396407 | 3_4:+76245787 | Msa0522890:five_prime_UTR |
| TAAAGCTCCAGTTGCAGCTC+GGG | 0.397705 | 3_4:+76248208 | Msa0522890:CDS |
| TTCTTACGCTGCAAAGTAGA+TGG | 0.406026 | 3_4:-76245948 | None:intergenic |
| ATCATAGTGCGTTTACTGTT+GGG | 0.406603 | 3_4:+76248260 | Msa0522890:CDS |
| TTGGTCTTCTTCACTTGTTA+GGG | 0.416132 | 3_4:+76245806 | Msa0522890:five_prime_UTR |
| CACTCTTCGCCATGATGAGT+TGG | 0.420792 | 3_4:+76247684 | Msa0522890:CDS |
| TTCACCCTACTAGTTGCAAT+CGG | 0.422424 | 3_4:+76250366 | Msa0522890:three_prime_UTR |
| ATCCTCCTCTGCAATATGTT+TGG | 0.422847 | 3_4:-76250314 | None:intergenic |
| GTTCTTCAGCTAGTGTTGCT+TGG | 0.427729 | 3_4:+76247418 | Msa0522890:CDS |
| ACTTCTCTGCCTGGTCATAT+AGG | 0.427888 | 3_4:-76247833 | None:intergenic |
| ATTGTGATTCATAGATTTGA+AGG | 0.432257 | 3_4:+76246034 | Msa0522890:intron |
| TGTCGTTATCTCTTCTACCT+CGG | 0.432513 | 3_4:+76248122 | Msa0522890:CDS |
| GTCGTTATCTCTTCTACCTC+GGG | 0.434794 | 3_4:+76248123 | Msa0522890:CDS |
| TCTTATAGTCCTTCACCATA+TGG | 0.437672 | 3_4:+76250491 | Msa0522890:three_prime_UTR |
| CCATGAACTTACTGGAGATC+TGG | 0.437963 | 3_4:+76247509 | Msa0522890:CDS |
| CCAAGCAATGCTGATTCAAC+AGG | 0.440687 | 3_4:-76250672 | None:intergenic |
| TAACAGTAAATTTCTAGCTC+AGG | 0.444215 | 3_4:-76247251 | None:intergenic |
| GAACGAAATTGAGCCAAATT+GGG | 0.450987 | 3_4:-76245859 | None:intergenic |
| AAATGGGTGGATGGTGTCTA+AGG | 0.451020 | 3_4:+76250114 | Msa0522890:CDS |
| TTGACCTCAACTTCTCTGCC+TGG | 0.452207 | 3_4:-76247842 | None:intergenic |
| TCGCCATGATGAGTTGGGTC+AGG | 0.453949 | 3_4:+76247690 | Msa0522890:CDS |
| ATGCTCTCAGCATCAGCAAC+AGG | 0.456927 | 3_4:-76250040 | None:intergenic |
| TATCATAGTGCGTTTACTGT+TGG | 0.459477 | 3_4:+76248259 | Msa0522890:CDS |
| TGGATGGTGTCTAAGGAAAC+AGG | 0.461685 | 3_4:+76250121 | Msa0522890:CDS |
| ACTAGCTGAAGAACAAGCTT+TGG | 0.471713 | 3_4:-76247409 | None:intergenic |
| AGTGTTTAGCTGTAGGGGTA+GGG | 0.475084 | 3_4:-76247223 | None:intergenic |
| AGATCCCGATTGCAACTAGT+AGG | 0.484380 | 3_4:-76250371 | None:intergenic |
| GTGTTTAGCTGTAGGGGTAG+GGG | 0.484533 | 3_4:-76247222 | None:intergenic |
| TGCGAAGCAGCAAATTAAGA+AGG | 0.487151 | 3_4:-76247794 | None:intergenic |
| GCAACAAGTGTTTAGCTGTA+GGG | 0.489547 | 3_4:-76247229 | None:intergenic |
| AACTTCCTTCGAGTAAGAAC+CGG | 0.493423 | 3_4:-76246078 | None:intergenic |
| GCTACATTGGATCATGCAAA+TGG | 0.497010 | 3_4:+76250097 | Msa0522890:CDS |
| CTGTCGATGTTATTGCATCT+AGG | 0.500017 | 3_4:+76247463 | Msa0522890:CDS |
| AGATGGAACTTGTGGAGAAA+CGG | 0.500179 | 3_4:-76245931 | None:intergenic |
| CTCCACGCATGAGCCTCAGC+TGG | 0.501442 | 3_4:+76250153 | Msa0522890:CDS |
| TCACCCTACTAGTTGCAATC+GGG | 0.501446 | 3_4:+76250367 | Msa0522890:three_prime_UTR |
| GTCTCCGACATAATGTCATC+AGG | 0.501605 | 3_4:+76249933 | Msa0522890:CDS |
| ACTCTTCGCCATGATGAGTT+GGG | 0.503587 | 3_4:+76247685 | Msa0522890:CDS |
| ACAACAGCAAGAGCAGGAAC+TGG | 0.505747 | 3_4:+76250291 | Msa0522890:CDS |
| GAATTCCAGGCTGTCCGCAT+TGG | 0.508181 | 3_4:+76249830 | Msa0522890:intron |
| GTGTCGAAGGCTATTCGTGA+TGG | 0.511320 | 3_4:+76250064 | Msa0522890:CDS |
| CCTGTTGAATCAGCATTGCT+TGG | 0.512911 | 3_4:+76250672 | Msa0522890:three_prime_UTR |
| ACATTTGTAAGCTCAAAGTA+AGG | 0.517576 | 3_4:-76248338 | None:intergenic |
| ATGAGTTCCGTCTGCACTGA+AGG | 0.520485 | 3_4:-76249897 | None:intergenic |
| GTAAAGCTCCAGTTGCAGCT+CGG | 0.520793 | 3_4:+76248207 | Msa0522890:CDS |
| TGTCGAAGGCTATTCGTGAT+GGG | 0.522093 | 3_4:+76250065 | Msa0522890:CDS |
| GTAAGAACCGGTCTCAATAA+CGG | 0.524017 | 3_4:-76246066 | None:intergenic |
| AGAGAGACAACAGCAAGAGC+AGG | 0.524456 | 3_4:+76250285 | Msa0522890:CDS |
| GAAACCTACTTGCATTGCAT+CGG | 0.524818 | 3_4:+76247656 | Msa0522890:intron |
| GGAGGATGATCATGAGATGG+AGG | 0.525489 | 3_4:+76247172 | Msa0522890:intron |
| AAGTGTTTAGCTGTAGGGGT+AGG | 0.526202 | 3_4:-76247224 | None:intergenic |
| AGCTAGTGAGATGCGAGAAT+AGG | 0.527722 | 3_4:-76249981 | None:intergenic |
| ATTGTGCATGTTAAGACAGA+AGG | 0.528644 | 3_4:-76250194 | None:intergenic |
| ATATGGTGAAGGACTATAAG+AGG | 0.528701 | 3_4:-76250489 | None:intergenic |
| TGAAGCACATTCAAACCAGC+AGG | 0.534748 | 3_4:+76247878 | Msa0522890:CDS |
| CGAACTGTCTTTATGCAGAA+AGG | 0.537836 | 3_4:+76248296 | Msa0522890:CDS |
| TGTAGGGGTAGGGGTTTGAA+TGG | 0.543905 | 3_4:-76247213 | None:intergenic |
| TTCGAATTCAATGTAACAAG+TGG | 0.544110 | 3_4:+76248234 | Msa0522890:CDS |
| TGCATAAAGACAGTTCGCTC+AGG | 0.545859 | 3_4:-76248290 | None:intergenic |
| CGACATAATGTCATCAGGAC+TGG | 0.551358 | 3_4:+76249938 | Msa0522890:CDS |
| GGCAGAGAAGTTGAGGTCAA+AGG | 0.552276 | 3_4:+76247845 | Msa0522890:CDS |
| GACAGAATGTGTCGCCCAGA+TGG | 0.554889 | 3_4:+76250731 | Msa0522890:three_prime_UTR |
| GGCAACAAGTGTTTAGCTGT+AGG | 0.555242 | 3_4:-76247230 | None:intergenic |
| TGTCTTTATGCAGAAAGGAA+TGG | 0.555289 | 3_4:+76248301 | Msa0522890:CDS |
| AAACCTGACCCAACTCATCA+TGG | 0.555876 | 3_4:-76247693 | None:intergenic |
| TTAGCATGAGGTTCAGAACC+AGG | 0.559671 | 3_4:-76246194 | None:intergenic |
| CAGACTGTGAGATTTCCATA+TGG | 0.561249 | 3_4:-76250506 | None:intergenic |
| GCGAAGCAGCAAATTAAGAA+GGG | 0.562737 | 3_4:-76247793 | None:intergenic |
| TGCTGAGAGCATTGTGTCGA+AGG | 0.568158 | 3_4:+76250051 | Msa0522890:CDS |
| GGATGATCATGAGATGGAGG+TGG | 0.570304 | 3_4:+76247175 | Msa0522890:CDS |
| TCGAATTCAATGTAACAAGT+GGG | 0.570948 | 3_4:+76248235 | Msa0522890:CDS |
| TTCGAACATAATTACTAGCA+AGG | 0.576402 | 3_4:-76250616 | None:intergenic |
| ATGACCAGGCAGAGAAGTTG+AGG | 0.578368 | 3_4:+76247838 | Msa0522890:CDS |
| ATAGGAGGATGATCATGAGA+TGG | 0.579908 | 3_4:+76247169 | Msa0522890:intron |
| CAACAAGTGTTTAGCTGTAG+GGG | 0.588492 | 3_4:-76247228 | None:intergenic |
| ATAGCGTCCGTTATTGAGAC+CGG | 0.589430 | 3_4:+76246059 | Msa0522890:CDS |
| GGCCAAACATATTGCAGAGG+AGG | 0.589837 | 3_4:+76250312 | Msa0522890:CDS |
| CAACTCATCATGGCGAAGAG+TGG | 0.590059 | 3_4:-76247683 | None:intergenic |
| GCAACCACCTTCAGTGCAGA+CGG | 0.594746 | 3_4:+76249890 | Msa0522890:CDS |
| GATCCCGATTGCAACTAGTA+GGG | 0.595058 | 3_4:-76250370 | None:intergenic |
| TGGGGCAATTGATGCTACAT+TGG | 0.595169 | 3_4:+76250084 | Msa0522890:CDS |
| CTACATTGGATCATGCAAAT+GGG | 0.597867 | 3_4:+76250098 | Msa0522890:CDS |
| ATGGAAATATAAGCAAATGT+CGG | 0.598463 | 3_4:-76250402 | None:intergenic |
| CAATCCGATGCAATGCAAGT+AGG | 0.600803 | 3_4:-76247660 | None:intergenic |
| GTGAGATTTCCATATGGTGA+AGG | 0.609669 | 3_4:-76250500 | None:intergenic |
| AAAGCTCCAGTTGCAGCTCG+GGG | 0.611705 | 3_4:+76248209 | Msa0522890:CDS |
| TACGCAGACAATTTAGCATG+AGG | 0.613498 | 3_4:-76246206 | None:intergenic |
| AGCCAGCTGAGGCTCATGCG+TGG | 0.615404 | 3_4:-76250155 | None:intergenic |
| GGTCATTCAGAGTAACACCT+TGG | 0.617949 | 3_4:-76250651 | None:intergenic |
| GGTTTGAATGGAAGATGTTG+TGG | 0.620968 | 3_4:-76247201 | None:intergenic |
| GGATCATGCAAATGGGTGGA+TGG | 0.621270 | 3_4:+76250105 | Msa0522890:CDS |
| TTTGAATGTGCTTCAAATCG+TGG | 0.621618 | 3_4:-76247870 | None:intergenic |
| TGAGACCGGTTCTTACTCGA+AGG | 0.622392 | 3_4:+76246073 | Msa0522890:CDS |
| ATTGTCTGCGTATCTTCCCA+AGG | 0.623168 | 3_4:+76246217 | Msa0522890:CDS |
| GGAGATCTGGCTGAAATTCG+GGG | 0.623695 | 3_4:+76247522 | Msa0522890:CDS |
| TGCAAAGTAGATGGAACTTG+TGG | 0.628606 | 3_4:-76245939 | None:intergenic |
| CGAGAATTGAAAGCCAGCTG+AGG | 0.642823 | 3_4:-76250166 | None:intergenic |
| GTCGAAGGCTATTCGTGATG+GGG | 0.643333 | 3_4:+76250066 | Msa0522890:CDS |
| CAGTCCTGATGACATTATGT+CGG | 0.646136 | 3_4:-76249937 | None:intergenic |
| TCACTACAACCTATATGACC+AGG | 0.647246 | 3_4:+76247824 | Msa0522890:CDS |
| TGTGGAGAAACGGAATTCGA+AGG | 0.647707 | 3_4:-76245921 | None:intergenic |
| TTCGTCTTACAATTGCATTG+AGG | 0.658485 | 3_4:+76246120 | Msa0522890:CDS |
| GAGATCTGGCTGAAATTCGG+GGG | 0.660656 | 3_4:+76247523 | Msa0522890:CDS |
| CATTGGATCATGCAAATGGG+TGG | 0.661664 | 3_4:+76250101 | Msa0522890:CDS |
| AGTTCCGTCTGCACTGAAGG+TGG | 0.692083 | 3_4:-76249894 | None:intergenic |
| ACTGGCCAAACATATTGCAG+AGG | 0.692977 | 3_4:+76250309 | Msa0522890:CDS |
| AGACCAAACAAGAAGCAACG+TGG | 0.750508 | 3_4:-76245790 | None:intergenic |
| ACAGCTCCAAATCTCCAATG+CGG | 0.755080 | 3_4:-76249844 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTGTACTTTT+TGG | + | chr3_4:76248009-76248028 | Msa0522890:intron | 10.0% |
| !!! | CTTTTTTAATAAAGAAAAAT+TGG | - | chr3_4:76248827-76248846 | None:intergenic | 10.0% |
| !! | TTAATAATTATAGATTCAAT+TGG | - | chr3_4:76249566-76249585 | None:intergenic | 10.0% |
| !!! | TTTTTTTTGTTGGTTATTTA+GGG | + | chr3_4:76246370-76246389 | Msa0522890:intron | 15.0% |
| !! | GTAATTTAGATTAAGAATTA+AGG | - | chr3_4:76246937-76246956 | None:intergenic | 15.0% |
| !! | AATTCTTAATCTAAATTACT+AGG | + | chr3_4:76246938-76246957 | Msa0522890:intron | 15.0% |
| !!! | TGTCTGATTTTTTATATTTT+AGG | + | chr3_4:76247386-76247405 | Msa0522890:intron | 15.0% |
| !! | TCTATATAATCAATAAATCA+AGG | + | chr3_4:76247565-76247584 | Msa0522890:intron | 15.0% |
| !! | ATATATTATTATGACAAACA+AGG | - | chr3_4:76248384-76248403 | None:intergenic | 15.0% |
| !! | TATTAAAAAAGTCAAAACAA+AGG | + | chr3_4:76248836-76248855 | Msa0522890:intron | 15.0% |
| !! | ATTAAAAAAGTCAAAACAAA+GGG | + | chr3_4:76248837-76248856 | Msa0522890:intron | 15.0% |
| !! | TAATTATTAATGTTATCTCA+AGG | + | chr3_4:76249576-76249595 | Msa0522890:intron | 15.0% |
| !!! | AAATGCATAAAATATTCTTT+TGG | - | chr3_4:76249663-76249682 | None:intergenic | 15.0% |
| !! | TGAAAAAAAGTCAATTAATT+AGG | + | chr3_4:76250592-76250611 | Msa0522890:three_prime_UTR | 15.0% |
| !! | CAAAATTCACAAATTGAAAA+CGG | - | chr3_4:76246012-76246031 | None:intergenic | 20.0% |
| !! | TTAACTTAGATTTAGCATTT+AGG | + | chr3_4:76246258-76246277 | Msa0522890:intron | 20.0% |
| !! | TAACTTAGATTTAGCATTTA+GGG | + | chr3_4:76246259-76246278 | Msa0522890:intron | 20.0% |
| !!! | GATGAATTAGTTTTTTTTGT+TGG | + | chr3_4:76246360-76246379 | Msa0522890:intron | 20.0% |
| !!! | GTTTTTTTTGTTGGTTATTT+AGG | + | chr3_4:76246369-76246388 | Msa0522890:intron | 20.0% |
| !! | GTAGTTTCAATTAAGAATTA+GGG | - | chr3_4:76246549-76246568 | None:intergenic | 20.0% |
| !!! | TGTTTTCTATGATTGTATTT+AGG | + | chr3_4:76246648-76246667 | Msa0522890:intron | 20.0% |
| !!! | GTTTTCTATGATTGTATTTA+GGG | + | chr3_4:76246649-76246668 | Msa0522890:intron | 20.0% |
| !! | TAAACACTTAAATGATAATC+AGG | + | chr3_4:76246872-76246891 | Msa0522890:intron | 20.0% |
| !! | TATCTTCATCAGAAAATATT+AGG | + | chr3_4:76247076-76247095 | Msa0522890:intron | 20.0% |
| !! | ATATAATCAATAAATCAAGG+AGG | + | chr3_4:76247568-76247587 | Msa0522890:intron | 20.0% |
| !!! | AACTTGTTTAAATCTTTTTG+TGG | + | chr3_4:76247619-76247638 | Msa0522890:intron | 20.0% |
| !!! | GAGAAGATTTTTTTATGTTA+GGG | + | chr3_4:76247730-76247749 | Msa0522890:intron | 20.0% |
| !! | GATAAGTTATAACTAAAAAG+TGG | - | chr3_4:76248522-76248541 | None:intergenic | 20.0% |
| !! | CTAACAAACATCTAATTTAT+AGG | - | chr3_4:76248776-76248795 | None:intergenic | 20.0% |
| !! | TTAAAAAAGTCAAAACAAAG+GGG | + | chr3_4:76248838-76248857 | Msa0522890:intron | 20.0% |
| !!! | GAGTACTTTTTGTATATAAA+TGG | + | chr3_4:76249035-76249054 | Msa0522890:intron | 20.0% |
| !!! | TTTTTGAATGTTCTAAATAC+AGG | + | chr3_4:76249208-76249227 | Msa0522890:intron | 20.0% |
| !! | TAAACTCTTAATCTCTTTAA+TGG | - | chr3_4:76249252-76249271 | None:intergenic | 20.0% |
| !! | TGAGAGATAGAAAATAAATA+AGG | + | chr3_4:76249362-76249381 | Msa0522890:intron | 20.0% |
| !! | GCAACAATTAACTATATTTA+GGG | - | chr3_4:76249410-76249429 | None:intergenic | 20.0% |
| !!! | AGAATATTTTATGCATTTGT+TGG | + | chr3_4:76249665-76249684 | Msa0522890:intron | 20.0% |
| !!! | GAAATTTTCAACTTTTGAAA+GGG | - | chr3_4:76250452-76250471 | None:intergenic | 20.0% |
| !!! | TGAAATTTTCAACTTTTGAA+AGG | - | chr3_4:76250453-76250472 | None:intergenic | 20.0% |
| !!! | TGAAAATTTCATTTTCTACA+TGG | + | chr3_4:76250462-76250481 | Msa0522890:three_prime_UTR | 20.0% |
| !! | CGTTTTCAATTTGTGAATTT+TGG | + | chr3_4:76246010-76246029 | Msa0522890:intron | 25.0% |
| ! | ATTGTGATTCATAGATTTGA+AGG | + | chr3_4:76246034-76246053 | Msa0522890:intron | 25.0% |
| ! | TTAAATCTACCATTGCATTT+AGG | + | chr3_4:76246337-76246356 | Msa0522890:intron | 25.0% |
| ! | TAAATCTACCATTGCATTTA+GGG | + | chr3_4:76246338-76246357 | Msa0522890:intron | 25.0% |
| !! | GACTATTTTCATACAGTTTA+TGG | - | chr3_4:76246464-76246483 | None:intergenic | 25.0% |
| ! | CGTAGTTTCAATTAAGAATT+AGG | - | chr3_4:76246550-76246569 | None:intergenic | 25.0% |
| ! | AATTCTTAATTGAAACTACG+AGG | + | chr3_4:76246550-76246569 | Msa0522890:intron | 25.0% |
| ! | ATTCTTAATTGAAACTACGA+GGG | + | chr3_4:76246551-76246570 | Msa0522890:intron | 25.0% |
| !! | ATTTTCATAACCTATCATAG+AGG | - | chr3_4:76246808-76246827 | None:intergenic | 25.0% |
| ! | GATTAAGAATTAAGGATGTT+TGG | - | chr3_4:76246929-76246948 | None:intergenic | 25.0% |
| !! | TTTTCTGATGAAGATAGAAA+GGG | - | chr3_4:76247072-76247091 | None:intergenic | 25.0% |
| !! | ATTTTCTGATGAAGATAGAA+AGG | - | chr3_4:76247073-76247092 | None:intergenic | 25.0% |
| !!! | AATTTTGTCACTGATTGTAT+AGG | + | chr3_4:76247151-76247170 | Msa0522890:intron | 25.0% |
| ! | TGAAAACATAAAAGCAATAC+AGG | - | chr3_4:76247330-76247349 | None:intergenic | 25.0% |
| !!! | GGAGAAGATTTTTTTATGTT+AGG | + | chr3_4:76247729-76247748 | Msa0522890:intron | 25.0% |
| ! | AAGGAGTAAGAATTAACAAA+AGG | - | chr3_4:76248062-76248081 | None:intergenic | 25.0% |
| ! | AATACTCCATAAAAACTAGT+CGG | - | chr3_4:76248469-76248488 | None:intergenic | 25.0% |
| ! | AAACACTCCTAAAAAATAAG+CGG | - | chr3_4:76248618-76248637 | None:intergenic | 25.0% |
| ! | AGCAAGTTAAAACTAAAAAG+TGG | - | chr3_4:76248689-76248708 | None:intergenic | 25.0% |
| ! | AATAGTCCTAAACAATAAGT+GGG | + | chr3_4:76248711-76248730 | Msa0522890:intron | 25.0% |
| ! | CAAACATCTAATTTATAGGT+GGG | - | chr3_4:76248772-76248791 | None:intergenic | 25.0% |
| ! | ACAAACATCTAATTTATAGG+TGG | - | chr3_4:76248773-76248792 | None:intergenic | 25.0% |
| !!! | TACAAAAAGTACTCATCATT+TGG | - | chr3_4:76249029-76249048 | None:intergenic | 25.0% |
| ! | ATAAGCATTTCATTACATCT+CGG | - | chr3_4:76249116-76249135 | None:intergenic | 25.0% |
| ! | CGCAACAATTAACTATATTT+AGG | - | chr3_4:76249411-76249430 | None:intergenic | 25.0% |
| ! | GAAGAAAGAAAATGGTTTAT+TGG | + | chr3_4:76249430-76249449 | Msa0522890:intron | 25.0% |
| !! | ATAAAATATTCTTTTGGCAC+AGG | - | chr3_4:76249657-76249676 | None:intergenic | 25.0% |
| !! | TCATTTGTTAATTCTCCATT+TGG | + | chr3_4:76249750-76249769 | Msa0522890:intron | 25.0% |
| ! | TATAGCAAATAACACAAGTA+TGG | - | chr3_4:76249780-76249799 | None:intergenic | 25.0% |
| ! | ATGGAAATATAAGCAAATGT+CGG | - | chr3_4:76250405-76250424 | None:intergenic | 25.0% |
| !!! | ATTCATGATGATGACTTTTA+TGG | + | chr3_4:76250534-76250553 | Msa0522890:three_prime_UTR | 25.0% |
| !!! | CTTTTATGGTTTGTTTCTTT+CGG | + | chr3_4:76250548-76250567 | Msa0522890:three_prime_UTR | 25.0% |
| !!! | TTTTATGGTTTGTTTCTTTC+GGG | + | chr3_4:76250549-76250568 | Msa0522890:three_prime_UTR | 25.0% |
| !! | TCGAAGTTTTTATTATTCCA+AGG | + | chr3_4:76250634-76250653 | Msa0522890:three_prime_UTR | 25.0% |
| !! | GAATGTTGTAAACTCTTTTT+AGG | + | chr3_4:76250694-76250713 | Msa0522890:three_prime_UTR | 25.0% |
| TAAGATGTGAAATCGATAGA+CGG | - | chr3_4:76245977-76245996 | None:intergenic | 30.0% | |
| TTAACACAAGTTTGTACCTT+GGG | - | chr3_4:76246236-76246255 | None:intergenic | 30.0% | |
| ATTAACACAAGTTTGTACCT+TGG | - | chr3_4:76246237-76246256 | None:intergenic | 30.0% | |
| TAATTCATCCCTAAATGCAA+TGG | - | chr3_4:76246349-76246368 | None:intergenic | 30.0% | |
| TTCTTAATTGAAACTACGAG+GGG | + | chr3_4:76246552-76246571 | Msa0522890:intron | 30.0% | |
| ! | GACTTTTTGACAGATCTTTT+AGG | + | chr3_4:76246758-76246777 | Msa0522890:intron | 30.0% |
| !!! | TTCTCTTCCTTTGTTTTTGA+CGG | + | chr3_4:76247102-76247121 | Msa0522890:intron | 30.0% |
| !! | TAACAGTAAATTTCTAGCTC+AGG | - | chr3_4:76247254-76247273 | None:intergenic | 30.0% |
| TGATCAGAAAAAATACAACG+AGG | + | chr3_4:76247298-76247317 | Msa0522890:CDS | 30.0% | |
| ! | ATGTTTTCAACTATGCAAAC+TGG | + | chr3_4:76247341-76247360 | Msa0522890:intron | 30.0% |
| ATCAATAAGCTTCATCACAA+GGG | - | chr3_4:76247991-76248010 | None:intergenic | 30.0% | |
| AATCAATAAGCTTCATCACA+AGG | - | chr3_4:76247992-76248011 | None:intergenic | 30.0% | |
| GAAAATTCGGACTATTCAAT+TGG | + | chr3_4:76248145-76248164 | Msa0522890:CDS | 30.0% | |
| TTCGAATTCAATGTAACAAG+TGG | + | chr3_4:76248234-76248253 | Msa0522890:CDS | 30.0% | |
| TCGAATTCAATGTAACAAGT+GGG | + | chr3_4:76248235-76248254 | Msa0522890:CDS | 30.0% | |
| ACATTTGTAAGCTCAAAGTA+AGG | - | chr3_4:76248341-76248360 | None:intergenic | 30.0% | |
| ACAAATGTAAGTCCACATTA+TGG | + | chr3_4:76248353-76248372 | Msa0522890:intron | 30.0% | |
| ACGACTACTAAAAAAAGAAG+TGG | + | chr3_4:76248551-76248570 | Msa0522890:intron | 30.0% | |
| CGACTACTAAAAAAAGAAGT+GGG | + | chr3_4:76248552-76248571 | Msa0522890:intron | 30.0% | |
| !!! | TTTACACCCGCTTATTTTTT+AGG | + | chr3_4:76248608-76248627 | Msa0522890:intron | 30.0% |
| AACACTCCTAAAAAATAAGC+GGG | - | chr3_4:76248617-76248636 | None:intergenic | 30.0% | |
| TTAGAAACTGTTAACTGAAG+TGG | + | chr3_4:76248637-76248656 | Msa0522890:intron | 30.0% | |
| ! | CACTTATTGTTTAGGACTAT+TGG | - | chr3_4:76248712-76248731 | None:intergenic | 30.0% |
| CAATAGTCCTAAACAATAAG+TGG | + | chr3_4:76248710-76248729 | Msa0522890:intron | 30.0% | |
| AAAGAAAGATGACAATGTGA+AGG | - | chr3_4:76248947-76248966 | None:intergenic | 30.0% | |
| ! | TTTTCTTCAACAATTGAGCT+AGG | - | chr3_4:76248976-76248995 | None:intergenic | 30.0% |
| ! | TTCACTATTTTCTGAGCATT+TGG | - | chr3_4:76249006-76249025 | None:intergenic | 30.0% |
| ATTGTTGCGAAGAAAGAAAA+TGG | + | chr3_4:76249422-76249441 | Msa0522890:intron | 30.0% | |
| ! | CACCTTTTAATGTTATCTCA+AGG | + | chr3_4:76249483-76249502 | Msa0522890:intron | 30.0% |
| ATTCCTTCTCAGATAAACTA+TGG | - | chr3_4:76249509-76249528 | None:intergenic | 30.0% | |
| !!! | GGTTCTATTTTTTCAGTCTT+TGG | + | chr3_4:76249686-76249705 | Msa0522890:intron | 30.0% |
| ! | TGTTAGTTTAGCTTATGTTG+TGG | + | chr3_4:76249808-76249827 | Msa0522890:intron | 30.0% |
| CTAATGGAAGTTCTTCATAA+TGG | - | chr3_4:76250424-76250443 | None:intergenic | 30.0% | |
| !! | TTTTGAAAGGGAAATGCTAA+TGG | - | chr3_4:76250440-76250459 | None:intergenic | 30.0% |
| ! | TTTCGGGATAATTGTGTTTT+TGG | + | chr3_4:76250565-76250584 | Msa0522890:three_prime_UTR | 30.0% |
| TTCGAACATAATTACTAGCA+AGG | - | chr3_4:76250619-76250638 | None:intergenic | 30.0% | |
| ! | TGGTGTAATTTTATCCATCT+GGG | - | chr3_4:76250748-76250767 | None:intergenic | 30.0% |
| ! | ATGGTGTAATTTTATCCATC+TGG | - | chr3_4:76250749-76250768 | None:intergenic | 30.0% |
| ! | TTTGGTCTTCTTCACTTGTT+AGG | + | chr3_4:76245805-76245824 | Msa0522890:five_prime_UTR | 35.0% |
| ! | TTGGTCTTCTTCACTTGTTA+GGG | + | chr3_4:76245806-76245825 | Msa0522890:five_prime_UTR | 35.0% |
| GAACGAAATTGAGCCAAATT+GGG | - | chr3_4:76245862-76245881 | None:intergenic | 35.0% | |
| TGAACGAAATTGAGCCAAAT+TGG | - | chr3_4:76245863-76245882 | None:intergenic | 35.0% | |
| TTCGTCTTACAATTGCATTG+AGG | + | chr3_4:76246120-76246139 | Msa0522890:CDS | 35.0% | |
| GTTGGTTATTTAGGGATGTT+TGG | + | chr3_4:76246378-76246397 | Msa0522890:intron | 35.0% | |
| GTTATTTAGGGATGTTTGGA+TGG | + | chr3_4:76246382-76246401 | Msa0522890:intron | 35.0% | |
| ACACTTGTGGAAACAACTTA+AGG | + | chr3_4:76246433-76246452 | Msa0522890:intron | 35.0% | |
| ! | TACTTGCAACTTTTGCAACA+TGG | + | chr3_4:76246607-76246626 | Msa0522890:intron | 35.0% |
| ! | TCTTTCTTGTTCTGCTGTTT+AGG | + | chr3_4:76246693-76246712 | Msa0522890:intron | 35.0% |
| ! | CTTTCTTGTTCTGCTGTTTA+GGG | + | chr3_4:76246694-76246713 | Msa0522890:intron | 35.0% |
| AAGTGTTTATGTCAGGAGAT+AGG | - | chr3_4:76246734-76246753 | None:intergenic | 35.0% | |
| TTCCATAAGTCCTCTATGAT+AGG | + | chr3_4:76246795-76246814 | Msa0522890:intron | 35.0% | |
| AACCTATCATAGAGGACTTA+TGG | - | chr3_4:76246800-76246819 | None:intergenic | 35.0% | |
| AAAGTCACAAGCAGTAAATG+GGG | - | chr3_4:76246991-76247010 | None:intergenic | 35.0% | |
| CAAAGTCACAAGCAGTAAAT+GGG | - | chr3_4:76246992-76247011 | None:intergenic | 35.0% | |
| ACAAAGTCACAAGCAGTAAA+TGG | - | chr3_4:76246993-76247012 | None:intergenic | 35.0% | |
| TGAAGATAGAAAGGGAAAGA+GGG | - | chr3_4:76247064-76247083 | None:intergenic | 35.0% | |
| ATGAAGATAGAAAGGGAAAG+AGG | - | chr3_4:76247065-76247084 | None:intergenic | 35.0% | |
| !!! | TCTCTTCCTTTGTTTTTGAC+GGG | + | chr3_4:76247103-76247122 | Msa0522890:intron | 35.0% |
| CTATTTCCCGTCAAAAACAA+AGG | - | chr3_4:76247112-76247131 | None:intergenic | 35.0% | |
| ! | TTTTTGACGGGAAATAGCAA+TGG | + | chr3_4:76247115-76247134 | Msa0522890:intron | 35.0% |
| ! | TTTGTCACTGATTGTATAGG+AGG | + | chr3_4:76247154-76247173 | Msa0522890:intron | 35.0% |
| TCAGAAAAAGTAGTACAAGC+AGG | - | chr3_4:76247277-76247296 | None:intergenic | 35.0% | |
| GGCAAATAATTGAATGCTCA+TGG | + | chr3_4:76247362-76247381 | Msa0522890:intron | 35.0% | |
| TCATATAGCCATGAACTTAC+TGG | + | chr3_4:76247501-76247520 | Msa0522890:CDS | 35.0% | |
| TCAGGTTTGTGTTCTACTTA+TGG | + | chr3_4:76247708-76247727 | Msa0522890:intron | 35.0% | |
| CTTACCTGTTGATGTATTTC+AGG | + | chr3_4:76247767-76247786 | Msa0522890:intron | 35.0% | |
| GTTTCCTGAAATACATCAAC+AGG | - | chr3_4:76247774-76247793 | None:intergenic | 35.0% | |
| TTTGAATGTGCTTCAAATCG+TGG | - | chr3_4:76247873-76247892 | None:intergenic | 35.0% | |
| ! | ACGAATTTCTTTTGTGCTCA+TGG | - | chr3_4:76247920-76247939 | None:intergenic | 35.0% |
| !! | GAGCACTGGAATAAAAAGTA+TGG | - | chr3_4:76247950-76247969 | None:intergenic | 35.0% |
| TATCATAGTGCGTTTACTGT+TGG | + | chr3_4:76248259-76248278 | Msa0522890:CDS | 35.0% | |
| ATCATAGTGCGTTTACTGTT+GGG | + | chr3_4:76248260-76248279 | Msa0522890:CDS | 35.0% | |
| TGTCTTTATGCAGAAAGGAA+TGG | + | chr3_4:76248301-76248320 | Msa0522890:CDS | 35.0% | |
| AACAAGGTTGAACCATAATG+TGG | - | chr3_4:76248368-76248387 | None:intergenic | 35.0% | |
| ATAAAAACTAGTCGGTGTAG+TGG | - | chr3_4:76248461-76248480 | None:intergenic | 35.0% | |
| !!! | ACTACACCGACTAGTTTTTA+TGG | + | chr3_4:76248460-76248479 | Msa0522890:intron | 35.0% |
| !! | ATTTTAGCAACATGCACCTT+AGG | + | chr3_4:76248486-76248505 | Msa0522890:intron | 35.0% |
| ! | TTTTAGCAACATGCACCTTA+GGG | + | chr3_4:76248487-76248506 | Msa0522890:intron | 35.0% |
| TGTATTCTAGCAAATGCCTA+TGG | + | chr3_4:76248575-76248594 | Msa0522890:intron | 35.0% | |
| GTATTCTAGCAAATGCCTAT+GGG | + | chr3_4:76248576-76248595 | Msa0522890:intron | 35.0% | |
| TGTAAATTAGTAGCTCCCAT+AGG | - | chr3_4:76248594-76248613 | None:intergenic | 35.0% | |
| ! | TTTTCTTCATCCATGTGTTG+TGG | - | chr3_4:76249065-76249084 | None:intergenic | 35.0% |
| ! | GAATGTTCTAAATACAGGTG+TGG | + | chr3_4:76249213-76249232 | Msa0522890:intron | 35.0% |
| !!! | GGAAAAAGGTGCTTTTTTCT+GGG | - | chr3_4:76249303-76249322 | None:intergenic | 35.0% |
| GGTTTATTGGTCCATGTAAA+AGG | + | chr3_4:76249443-76249462 | Msa0522890:intron | 35.0% | |
| GGCCTTGAGATAACATTAAA+AGG | - | chr3_4:76249488-76249507 | None:intergenic | 35.0% | |
| CAACCTTTCTTGCACAATTT+AGG | + | chr3_4:76249614-76249633 | Msa0522890:intron | 35.0% | |
| ! | AAATATTCTTTTGGCACAGG+TGG | - | chr3_4:76249654-76249673 | None:intergenic | 35.0% |
| CACAAGTATGGATATCCAAA+TGG | - | chr3_4:76249768-76249787 | None:intergenic | 35.0% | |
| CTGATGTTGCTAAAAAGTTG+AGG | + | chr3_4:76250002-76250021 | Msa0522890:CDS | 35.0% | |
| TGTTGCTAAAAAGTTGAGGT+TGG | + | chr3_4:76250006-76250025 | Msa0522890:CDS | 35.0% | |
| CTACATTGGATCATGCAAAT+GGG | + | chr3_4:76250098-76250117 | Msa0522890:CDS | 35.0% | |
| ATTGTGCATGTTAAGACAGA+AGG | - | chr3_4:76250197-76250216 | None:intergenic | 35.0% | |
| ATATGGTGAAGGACTATAAG+AGG | - | chr3_4:76250492-76250511 | None:intergenic | 35.0% | |
| TCTTATAGTCCTTCACCATA+TGG | + | chr3_4:76250491-76250510 | Msa0522890:three_prime_UTR | 35.0% | |
| ! | CTCTCAATTTTCGCCCAATT+TGG | + | chr3_4:76245846-76245865 | Msa0522890:five_prime_UTR | 40.0% |
| AGATGGAACTTGTGGAGAAA+CGG | - | chr3_4:76245934-76245953 | None:intergenic | 40.0% | |
| TGCAAAGTAGATGGAACTTG+TGG | - | chr3_4:76245942-76245961 | None:intergenic | 40.0% | |
| TTCTTACGCTGCAAAGTAGA+TGG | - | chr3_4:76245951-76245970 | None:intergenic | 40.0% | |
| GTAAGAACCGGTCTCAATAA+CGG | - | chr3_4:76246069-76246088 | None:intergenic | 40.0% | |
| AACTTCCTTCGAGTAAGAAC+CGG | - | chr3_4:76246081-76246100 | None:intergenic | 40.0% | |
| TACGCAGACAATTTAGCATG+AGG | - | chr3_4:76246209-76246228 | None:intergenic | 40.0% | |
| ACTTATTTGAGCTTGCCTAC+TGG | + | chr3_4:76246405-76246424 | Msa0522890:intron | 40.0% | |
| ATAGGAGGATGATCATGAGA+TGG | + | chr3_4:76247169-76247188 | Msa0522890:intron | 40.0% | |
| GGTTTGAATGGAAGATGTTG+TGG | - | chr3_4:76247204-76247223 | None:intergenic | 40.0% | |
| CAACAAGTGTTTAGCTGTAG+GGG | - | chr3_4:76247231-76247250 | None:intergenic | 40.0% | |
| GCAACAAGTGTTTAGCTGTA+GGG | - | chr3_4:76247232-76247251 | None:intergenic | 40.0% | |
| ACTAGCTGAAGAACAAGCTT+TGG | - | chr3_4:76247412-76247431 | None:intergenic | 40.0% | |
| CTGTCGATGTTATTGCATCT+AGG | + | chr3_4:76247463-76247482 | Msa0522890:CDS | 40.0% | |
| GAAACCTACTTGCATTGCAT+CGG | + | chr3_4:76247656-76247675 | Msa0522890:intron | 40.0% | |
| GCGAAGCAGCAAATTAAGAA+GGG | - | chr3_4:76247796-76247815 | None:intergenic | 40.0% | |
| TGCGAAGCAGCAAATTAAGA+AGG | - | chr3_4:76247797-76247816 | None:intergenic | 40.0% | |
| TCACTACAACCTATATGACC+AGG | + | chr3_4:76247824-76247843 | Msa0522890:CDS | 40.0% | |
| GATAGAACTAACATACCTGC+TGG | - | chr3_4:76247896-76247915 | None:intergenic | 40.0% | |
| AGAACAAGTGTGCACATGAA+AGG | - | chr3_4:76248081-76248100 | None:intergenic | 40.0% | |
| GAGATAACGACAGAACTGAA+AGG | - | chr3_4:76248114-76248133 | None:intergenic | 40.0% | |
| TGTCGTTATCTCTTCTACCT+CGG | + | chr3_4:76248122-76248141 | Msa0522890:CDS | 40.0% | |
| TCTTCTACCTCGGGAAAATT+CGG | + | chr3_4:76248132-76248151 | Msa0522890:CDS | 40.0% | |
| CGAACTGTCTTTATGCAGAA+AGG | + | chr3_4:76248296-76248315 | Msa0522890:CDS | 40.0% | |
| AAGTGGTTAAATGCACCCTA+AGG | - | chr3_4:76248505-76248524 | None:intergenic | 40.0% | |
| AAGTGGTTAAATGCACCTCA+AGG | + | chr3_4:76248654-76248673 | Msa0522890:intron | 40.0% | |
| CGTACACCCACTTATTGTTT+AGG | - | chr3_4:76248720-76248739 | None:intergenic | 40.0% | |
| TCTTGTCCAACTAACGTGTT+GGG | - | chr3_4:76248801-76248820 | None:intergenic | 40.0% | |
| ATCTTGTCCAACTAACGTGT+TGG | - | chr3_4:76248802-76248821 | None:intergenic | 40.0% | |
| TTGGAGGAAGATGAAACAAC+GGG | - | chr3_4:76248917-76248936 | None:intergenic | 40.0% | |
| GTTGGAGGAAGATGAAACAA+CGG | - | chr3_4:76248918-76248937 | None:intergenic | 40.0% | |
| GAAAGATGACAATGTGAAGG+AGG | - | chr3_4:76248944-76248963 | None:intergenic | 40.0% | |
| CTTCAACAATTGAGCTAGGA+AGG | - | chr3_4:76248972-76248991 | None:intergenic | 40.0% | |
| !!! | GGGAAAAAGGTGCTTTTTTC+TGG | - | chr3_4:76249304-76249323 | None:intergenic | 40.0% |
| GGAAAAAACGGAAGGGAAAA+AGG | - | chr3_4:76249317-76249336 | None:intergenic | 40.0% | |
| CGATTTCCCAGTGGAAAAAA+CGG | - | chr3_4:76249329-76249348 | None:intergenic | 40.0% | |
| CTAGTTTAACGATTTCCCAG+TGG | - | chr3_4:76249338-76249357 | None:intergenic | 40.0% | |
| ! | TTGGTCCATGTAAAAGGTGT+TGG | + | chr3_4:76249449-76249468 | Msa0522890:intron | 40.0% |
| !! | TGGTCCATGTAAAAGGTGTT+GGG | + | chr3_4:76249450-76249469 | Msa0522890:intron | 40.0% |
| ! | AGTACCCAACACCTTTTACA+TGG | - | chr3_4:76249457-76249476 | None:intergenic | 40.0% |
| AGGCCATAGTTTATCTGAGA+AGG | + | chr3_4:76249503-76249522 | Msa0522890:intron | 40.0% | |
| AGCTTATGTTGTGGAATTCC+AGG | + | chr3_4:76249817-76249836 | Msa0522890:intron | 40.0% | |
| ! | TTGGAGATTTGGAGCTGTTT+AGG | + | chr3_4:76249849-76249868 | Msa0522890:CDS | 40.0% |
| CAGTCCTGATGACATTATGT+CGG | - | chr3_4:76249940-76249959 | None:intergenic | 40.0% | |
| GCTACATTGGATCATGCAAA+TGG | + | chr3_4:76250097-76250116 | Msa0522890:CDS | 40.0% | |
| ATCCTCCTCTGCAATATGTT+TGG | - | chr3_4:76250317-76250336 | None:intergenic | 40.0% | |
| TTCACCCTACTAGTTGCAAT+CGG | + | chr3_4:76250366-76250385 | Msa0522890:three_prime_UTR | 40.0% | |
| GTGAGATTTCCATATGGTGA+AGG | - | chr3_4:76250503-76250522 | None:intergenic | 40.0% | |
| CAGACTGTGAGATTTCCATA+TGG | - | chr3_4:76250509-76250528 | None:intergenic | 40.0% | |
| TGACCACGTTGCTTCTTGTT+TGG | + | chr3_4:76245787-76245806 | Msa0522890:five_prime_UTR | 45.0% | |
| AGACCAAACAAGAAGCAACG+TGG | - | chr3_4:76245793-76245812 | None:intergenic | 45.0% | |
| TGTGGAGAAACGGAATTCGA+AGG | - | chr3_4:76245924-76245943 | None:intergenic | 45.0% | |
| ATAGCGTCCGTTATTGAGAC+CGG | + | chr3_4:76246059-76246078 | Msa0522890:CDS | 45.0% | |
| TTAGCATGAGGTTCAGAACC+AGG | - | chr3_4:76246197-76246216 | None:intergenic | 45.0% | |
| ATTGTCTGCGTATCTTCCCA+AGG | + | chr3_4:76246217-76246236 | Msa0522890:CDS | 45.0% | |
| CCACAAGTGTTTATGCCAGT+AGG | - | chr3_4:76246423-76246442 | None:intergenic | 45.0% | |
| CCTACTGGCATAAACACTTG+TGG | + | chr3_4:76246420-76246439 | Msa0522890:intron | 45.0% | |
| GTCTCGCAAGTGTTTATGTC+AGG | - | chr3_4:76246741-76246760 | None:intergenic | 45.0% | |
| AGTGTTTAGCTGTAGGGGTA+GGG | - | chr3_4:76247226-76247245 | None:intergenic | 45.0% | |
| AAGTGTTTAGCTGTAGGGGT+AGG | - | chr3_4:76247227-76247246 | None:intergenic | 45.0% | |
| GGCAACAAGTGTTTAGCTGT+AGG | - | chr3_4:76247233-76247252 | None:intergenic | 45.0% | |
| ! | GTTCTTCAGCTAGTGTTGCT+TGG | + | chr3_4:76247418-76247437 | Msa0522890:CDS | 45.0% |
| CCAGATCTCCAGTAAGTTCA+TGG | - | chr3_4:76247512-76247531 | None:intergenic | 45.0% | |
| CCATGAACTTACTGGAGATC+TGG | + | chr3_4:76247509-76247528 | Msa0522890:CDS | 45.0% | |
| CTGGAGATCTGGCTGAAATT+CGG | + | chr3_4:76247520-76247539 | Msa0522890:CDS | 45.0% | |
| TGGAGATCTGGCTGAAATTC+GGG | + | chr3_4:76247521-76247540 | Msa0522890:CDS | 45.0% | |
| CAATCCGATGCAATGCAAGT+AGG | - | chr3_4:76247663-76247682 | None:intergenic | 45.0% | |
| ACTCTTCGCCATGATGAGTT+GGG | + | chr3_4:76247685-76247704 | Msa0522890:CDS | 45.0% | |
| AAACCTGACCCAACTCATCA+TGG | - | chr3_4:76247696-76247715 | None:intergenic | 45.0% | |
| ACTTCTCTGCCTGGTCATAT+AGG | - | chr3_4:76247836-76247855 | None:intergenic | 45.0% | |
| TGAAGCACATTCAAACCAGC+AGG | + | chr3_4:76247878-76247897 | Msa0522890:CDS | 45.0% | |
| GTCGTTATCTCTTCTACCTC+GGG | + | chr3_4:76248123-76248142 | Msa0522890:CDS | 45.0% | |
| ! | GAATAGTCCGAATTTTCCCG+AGG | - | chr3_4:76248142-76248161 | None:intergenic | 45.0% |
| TGCATAAAGACAGTTCGCTC+AGG | - | chr3_4:76248293-76248312 | None:intergenic | 45.0% | |
| GTGTAGTGGTTAAGGGAGAT+AGG | - | chr3_4:76248447-76248466 | None:intergenic | 45.0% | |
| CTAGTCGGTGTAGTGGTTAA+GGG | - | chr3_4:76248454-76248473 | None:intergenic | 45.0% | |
| ACTAGTCGGTGTAGTGGTTA+AGG | - | chr3_4:76248455-76248474 | None:intergenic | 45.0% | |
| TGGGTGTACGTTAGCAAATC+CGG | + | chr3_4:76248730-76248749 | Msa0522890:intron | 45.0% | |
| TTAGCACCCAACACGTTAGT+TGG | + | chr3_4:76248792-76248811 | Msa0522890:intron | 45.0% | |
| ACAATGTGAAGGAGGATGGT+TGG | - | chr3_4:76248936-76248955 | None:intergenic | 45.0% | |
| GATGACAATGTGAAGGAGGA+TGG | - | chr3_4:76248940-76248959 | None:intergenic | 45.0% | |
| AAATGGCACACCACAACACA+TGG | + | chr3_4:76249052-76249071 | Msa0522890:intron | 45.0% | |
| ATCTCGGTCTATCTACAGAC+TGG | - | chr3_4:76249100-76249119 | None:intergenic | 45.0% | |
| !!! | TTCCCTTCCGTTTTTTCCAC+TGG | + | chr3_4:76249319-76249338 | Msa0522890:intron | 45.0% |
| !!! | TCCCTTCCGTTTTTTCCACT+GGG | + | chr3_4:76249320-76249339 | Msa0522890:intron | 45.0% |
| TCCCAGTGGAAAAAACGGAA+GGG | - | chr3_4:76249324-76249343 | None:intergenic | 45.0% | |
| TTCCCAGTGGAAAAAACGGA+AGG | - | chr3_4:76249325-76249344 | None:intergenic | 45.0% | |
| AAAGGTTGACCACTAGGCTA+TGG | - | chr3_4:76249602-76249621 | None:intergenic | 45.0% | |
| TGCAAGAAAGGTTGACCACT+AGG | - | chr3_4:76249608-76249627 | None:intergenic | 45.0% | |
| GGGCCTAAATTGTGCAAGAA+AGG | - | chr3_4:76249620-76249639 | None:intergenic | 45.0% | |
| CACAGGTGGTAACTAACTCA+GGG | - | chr3_4:76249640-76249659 | None:intergenic | 45.0% | |
| ACAGCTCCAAATCTCCAATG+CGG | - | chr3_4:76249847-76249866 | None:intergenic | 45.0% | |
| GTCTCCGACATAATGTCATC+AGG | + | chr3_4:76249933-76249952 | Msa0522890:CDS | 45.0% | |
| CGACATAATGTCATCAGGAC+TGG | + | chr3_4:76249938-76249957 | Msa0522890:CDS | 45.0% | |
| AGCTAGTGAGATGCGAGAAT+AGG | - | chr3_4:76249984-76250003 | None:intergenic | 45.0% | |
| TCAGCATCAGCAACAGGATT+TGG | - | chr3_4:76250037-76250056 | None:intergenic | 45.0% | |
| TGTCGAAGGCTATTCGTGAT+GGG | + | chr3_4:76250065-76250084 | Msa0522890:CDS | 45.0% | |
| TGGGGCAATTGATGCTACAT+TGG | + | chr3_4:76250084-76250103 | Msa0522890:CDS | 45.0% | |
| CATTGGATCATGCAAATGGG+TGG | + | chr3_4:76250101-76250120 | Msa0522890:CDS | 45.0% | |
| AAATGGGTGGATGGTGTCTA+AGG | + | chr3_4:76250114-76250133 | Msa0522890:CDS | 45.0% | |
| TGGATGGTGTCTAAGGAAAC+AGG | + | chr3_4:76250121-76250140 | Msa0522890:CDS | 45.0% | |
| ACTGGCCAAACATATTGCAG+AGG | + | chr3_4:76250309-76250328 | Msa0522890:CDS | 45.0% | |
| TCACCCTACTAGTTGCAATC+GGG | + | chr3_4:76250367-76250386 | Msa0522890:three_prime_UTR | 45.0% | |
| GATCCCGATTGCAACTAGTA+GGG | - | chr3_4:76250373-76250392 | None:intergenic | 45.0% | |
| AGATCCCGATTGCAACTAGT+AGG | - | chr3_4:76250374-76250393 | None:intergenic | 45.0% | |
| GGTCATTCAGAGTAACACCT+TGG | - | chr3_4:76250654-76250673 | None:intergenic | 45.0% | |
| !! | CCAAGCAATGCTGATTCAAC+AGG | - | chr3_4:76250675-76250694 | None:intergenic | 45.0% |
| CCTGTTGAATCAGCATTGCT+TGG | + | chr3_4:76250672-76250691 | Msa0522890:three_prime_UTR | 45.0% | |
| !! | AATATATAAGATTTATAAAT+AGG | - | chr3_4:76246291-76246310 | None:intergenic | 5.0% |
| !!! | TTAAATTTTTTATACAAATT+AGG | + | chr3_4:76246523-76246542 | Msa0522890:intron | 5.0% |
| !!! | TTTTTTAATAAAGAAAAATT+GGG | - | chr3_4:76248826-76248845 | None:intergenic | 5.0% |
| ! | TGAGACCGGTTCTTACTCGA+AGG | + | chr3_4:76246073-76246092 | Msa0522890:CDS | 50.0% |
| CTCGATCATGTTCTCACTCC+TGG | + | chr3_4:76246176-76246195 | Msa0522890:CDS | 50.0% | |
| GGAGGATGATCATGAGATGG+AGG | + | chr3_4:76247172-76247191 | Msa0522890:intron | 50.0% | |
| GGATGATCATGAGATGGAGG+TGG | + | chr3_4:76247175-76247194 | Msa0522890:CDS | 50.0% | |
| TGTAGGGGTAGGGGTTTGAA+TGG | - | chr3_4:76247216-76247235 | None:intergenic | 50.0% | |
| GTGTTTAGCTGTAGGGGTAG+GGG | - | chr3_4:76247225-76247244 | None:intergenic | 50.0% | |
| GGAGATCTGGCTGAAATTCG+GGG | + | chr3_4:76247522-76247541 | Msa0522890:CDS | 50.0% | |
| GAGATCTGGCTGAAATTCGG+GGG | + | chr3_4:76247523-76247542 | Msa0522890:CDS | 50.0% | |
| CAACTCATCATGGCGAAGAG+TGG | - | chr3_4:76247686-76247705 | None:intergenic | 50.0% | |
| CACTCTTCGCCATGATGAGT+TGG | + | chr3_4:76247684-76247703 | Msa0522890:CDS | 50.0% | |
| ATGACCAGGCAGAGAAGTTG+AGG | + | chr3_4:76247838-76247857 | Msa0522890:CDS | 50.0% | |
| TTGACCTCAACTTCTCTGCC+TGG | - | chr3_4:76247845-76247864 | None:intergenic | 50.0% | |
| GGCAGAGAAGTTGAGGTCAA+AGG | + | chr3_4:76247845-76247864 | Msa0522890:CDS | 50.0% | |
| TATTCCAGTGCTCACAGCTG+TGG | + | chr3_4:76247957-76247976 | Msa0522890:intron | 50.0% | |
| GTAAAGCTCCAGTTGCAGCT+CGG | + | chr3_4:76248207-76248226 | Msa0522890:CDS | 50.0% | |
| TAAAGCTCCAGTTGCAGCTC+GGG | + | chr3_4:76248208-76248227 | Msa0522890:CDS | 50.0% | |
| AAGTGGTTGCATACGCCTTG+AGG | - | chr3_4:76248672-76248691 | None:intergenic | 50.0% | |
| GGGTGTACGTTAGCAAATCC+GGG | + | chr3_4:76248731-76248750 | Msa0522890:intron | 50.0% | |
| GGGTGTGCAATAGCATTACC+CGG | - | chr3_4:76248752-76248771 | None:intergenic | 50.0% | |
| ATGTGAAGGAGGATGGTTGG+AGG | - | chr3_4:76248933-76248952 | None:intergenic | 50.0% | |
| ATCTCAAGGCCATAGCCTAG+TGG | + | chr3_4:76249590-76249609 | Msa0522890:intron | 50.0% | |
| GCACAGGTGGTAACTAACTC+AGG | - | chr3_4:76249641-76249660 | None:intergenic | 50.0% | |
| ATGAGTTCCGTCTGCACTGA+AGG | - | chr3_4:76249900-76249919 | None:intergenic | 50.0% | |
| ATGCTCTCAGCATCAGCAAC+AGG | - | chr3_4:76250043-76250062 | None:intergenic | 50.0% | |
| !! | TGCTGAGAGCATTGTGTCGA+AGG | + | chr3_4:76250051-76250070 | Msa0522890:CDS | 50.0% |
| GTGTCGAAGGCTATTCGTGA+TGG | + | chr3_4:76250064-76250083 | Msa0522890:CDS | 50.0% | |
| GTCGAAGGCTATTCGTGATG+GGG | + | chr3_4:76250066-76250085 | Msa0522890:CDS | 50.0% | |
| GGATCATGCAAATGGGTGGA+TGG | + | chr3_4:76250105-76250124 | Msa0522890:CDS | 50.0% | |
| CGAGAATTGAAAGCCAGCTG+AGG | - | chr3_4:76250169-76250188 | None:intergenic | 50.0% | |
| AGAGAGACAACAGCAAGAGC+AGG | + | chr3_4:76250285-76250304 | Msa0522890:CDS | 50.0% | |
| ACAACAGCAAGAGCAGGAAC+TGG | + | chr3_4:76250291-76250310 | Msa0522890:CDS | 50.0% | |
| GGCCAAACATATTGCAGAGG+AGG | + | chr3_4:76250312-76250331 | Msa0522890:CDS | 50.0% | |
| ! | TCGCCATGATGAGTTGGGTC+AGG | + | chr3_4:76247690-76247709 | Msa0522890:CDS | 55.0% |
| ATCACCACAGCTGTGAGCAC+TGG | - | chr3_4:76247964-76247983 | None:intergenic | 55.0% | |
| GAGCTTTACGAGCAGCTTGC+AGG | - | chr3_4:76248196-76248215 | None:intergenic | 55.0% | |
| AAAGCTCCAGTTGCAGCTCG+GGG | + | chr3_4:76248209-76248228 | Msa0522890:CDS | 55.0% | |
| GAATTCCAGGCTGTCCGCAT+TGG | + | chr3_4:76249830-76249849 | Msa0522890:intron | 55.0% | |
| AATCTCCAATGCGGACAGCC+TGG | - | chr3_4:76249838-76249857 | None:intergenic | 55.0% | |
| GGCTGTCCGCATTGGAGATT+TGG | + | chr3_4:76249838-76249857 | Msa0522890:intron | 55.0% | |
| GCAACCACCTTCAGTGCAGA+CGG | + | chr3_4:76249890-76249909 | Msa0522890:CDS | 55.0% | |
| AGTTCCGTCTGCACTGAAGG+TGG | - | chr3_4:76249897-76249916 | None:intergenic | 55.0% | |
| GACAGAATGTGTCGCCCAGA+TGG | + | chr3_4:76250731-76250750 | Msa0522890:three_prime_UTR | 55.0% | |
| CGAAAACCCCGAGCTGCAAC+TGG | - | chr3_4:76248218-76248237 | None:intergenic | 60.0% | |
| CTCCACGCATGAGCCTCAGC+TGG | + | chr3_4:76250153-76250172 | Msa0522890:CDS | 65.0% | |
| AGCCAGCTGAGGCTCATGCG+TGG | - | chr3_4:76250158-76250177 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 76245754 | 76250781 | 76245754 | ID=Msa0522890;Name=Msa0522890 |
| chr3_4 | mRNA | 76245754 | 76250781 | 76245754 | ID=Msa0522890-mRNA-1;Parent=Msa0522890;Name=Msa0522890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=131|1|1|1|1|1|8|430|490 |
| chr3_4 | exon | 76245754 | 76245963 | 76245754 | ID=Msa0522890-mRNA-1:exon:21966;Parent=Msa0522890-mRNA-1 |
| chr3_4 | exon | 76246048 | 76246238 | 76246048 | ID=Msa0522890-mRNA-1:exon:21967;Parent=Msa0522890-mRNA-1 |
| chr3_4 | exon | 76247173 | 76247319 | 76247173 | ID=Msa0522890-mRNA-1:exon:21968;Parent=Msa0522890-mRNA-1 |
| chr3_4 | exon | 76247408 | 76247544 | 76247408 | ID=Msa0522890-mRNA-1:exon:21969;Parent=Msa0522890-mRNA-1 |
| chr3_4 | exon | 76247657 | 76247711 | 76247657 | ID=Msa0522890-mRNA-1:exon:21970;Parent=Msa0522890-mRNA-1 |
| chr3_4 | exon | 76247789 | 76247899 | 76247789 | ID=Msa0522890-mRNA-1:exon:21971;Parent=Msa0522890-mRNA-1 |
| chr3_4 | exon | 76248119 | 76248358 | 76248119 | ID=Msa0522890-mRNA-1:exon:21972;Parent=Msa0522890-mRNA-1 |
| chr3_4 | exon | 76249839 | 76250781 | 76249839 | ID=Msa0522890-mRNA-1:exon:21973;Parent=Msa0522890-mRNA-1 |
| chr3_4 | five_prime_UTR | 76245754 | 76245884 | 76245754 | ID=Msa0522890-mRNA-1:five_prime_utr;Parent=Msa0522890-mRNA-1 |
| chr3_4 | CDS | 76245885 | 76245963 | 76245885 | ID=Msa0522890-mRNA-1:cds;Parent=Msa0522890-mRNA-1 |
| chr3_4 | CDS | 76246048 | 76246238 | 76246048 | ID=Msa0522890-mRNA-1:cds;Parent=Msa0522890-mRNA-1 |
| chr3_4 | CDS | 76247173 | 76247319 | 76247173 | ID=Msa0522890-mRNA-1:cds;Parent=Msa0522890-mRNA-1 |
| chr3_4 | CDS | 76247408 | 76247544 | 76247408 | ID=Msa0522890-mRNA-1:cds;Parent=Msa0522890-mRNA-1 |
| chr3_4 | CDS | 76247657 | 76247711 | 76247657 | ID=Msa0522890-mRNA-1:cds;Parent=Msa0522890-mRNA-1 |
| chr3_4 | CDS | 76247789 | 76247899 | 76247789 | ID=Msa0522890-mRNA-1:cds;Parent=Msa0522890-mRNA-1 |
| chr3_4 | CDS | 76248119 | 76248358 | 76248119 | ID=Msa0522890-mRNA-1:cds;Parent=Msa0522890-mRNA-1 |
| chr3_4 | CDS | 76249839 | 76250351 | 76249839 | ID=Msa0522890-mRNA-1:cds;Parent=Msa0522890-mRNA-1 |
| chr3_4 | three_prime_UTR | 76250352 | 76250781 | 76250352 | ID=Msa0522890-mRNA-1:three_prime_utr;Parent=Msa0522890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
