Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479620 | XP_003603813.1 | 98.980 | 490 | 5 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1002 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479620 | sp|P93768|PSMD3_TOBAC | 85.743 | 491 | 66 | 2 | 1 | 490 | 1 | 488 | 0.0 | 826 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479620 | G7J5U6 | 98.980 | 490 | 5 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1002 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0126160 | Msa0479620 | 0.807481 | 4.950339e-50 | -8.615850e-47 |
| Msa0479620 | Msa0519150 | 0.809160 | 2.171087e-50 | -8.615850e-47 |
| Msa0479620 | Msa0522890 | 0.956113 | 6.328226e-114 | -8.615850e-47 |
| Msa0479620 | Msa0656810 | 0.838371 | 2.991759e-57 | -8.615850e-47 |
| Msa0479620 | Msa0760090 | 0.802388 | 5.743659e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479620 | MtrunA17_Chr3g0143291 | 98.980 | 490 | 5 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1002 |
| Msa0479620 | MtrunA17_Chr1g0157071 | 85.567 | 485 | 56 | 5 | 1 | 482 | 1 | 474 | 0.0 | 792 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479620 | AT1G20200.1 | 82.653 | 490 | 83 | 1 | 1 | 490 | 1 | 488 | 0.0 | 810 |
| Msa0479620 | AT1G75990.1 | 81.633 | 490 | 87 | 1 | 1 | 490 | 1 | 487 | 0.0 | 785 |
Find 124 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACGAAATTGAGCGAAAT+TGG | 0.133810 | 3_3:+84610280 | None:intergenic |
| TTTGGTCTTCTTCACTTGTT+AGG | 0.185790 | 3_3:-84610335 | Msa0479620:five_prime_UTR |
| TGACTTGTTATTGAATATTA+TGG | 0.258695 | 3_3:+84605377 | None:intergenic |
| TGGAGATCTGGCTGAAATTC+GGG | 0.287672 | 3_3:-84608619 | Msa0479620:CDS |
| GGCTGTCCGCATTGGAGATT+TGG | 0.288995 | 3_3:-84606302 | Msa0479620:CDS |
| TTGGAGATTTGGAGCTGTTT+AGG | 0.292663 | 3_3:-84606291 | Msa0479620:CDS |
| CTCGATCATGTTCTCACTCC+TGG | 0.302582 | 3_3:-84609964 | Msa0479620:CDS |
| TCATATAGCCATGAACTTAC+TGG | 0.313557 | 3_3:-84608639 | Msa0479620:CDS |
| GAGCTTTACGAGCAGCTTGC+AGG | 0.339070 | 3_3:+84607947 | None:intergenic |
| CTGGAGATCTGGCTGAAATT+CGG | 0.352735 | 3_3:-84608620 | Msa0479620:CDS |
| CCAGATCTCCAGTAAGTTCA+TGG | 0.361028 | 3_3:+84608631 | None:intergenic |
| CGAAAACCCCGAGCTGCAAC+TGG | 0.373967 | 3_3:+84607925 | None:intergenic |
| CTAATGGAAGTTCTTCATAA+TGG | 0.374767 | 3_3:+84605719 | None:intergenic |
| GAAAATTCGGACTATTCAAT+TGG | 0.381260 | 3_3:-84607995 | Msa0479620:CDS |
| TCAGCATCAGCAACAGGATT+TGG | 0.384636 | 3_3:+84606106 | None:intergenic |
| TCTTCTACCTCGGGAAAATT+CGG | 0.396222 | 3_3:-84608008 | Msa0479620:CDS |
| TGACCACGTTGCTTCTTGTT+TGG | 0.396407 | 3_3:-84610353 | Msa0479620:five_prime_UTR |
| TAAAGCTCCAGTTGCAGCTC+GGG | 0.397705 | 3_3:-84607932 | Msa0479620:CDS |
| TTCTTACGCTGCAAAGTAGA+TGG | 0.406026 | 3_3:+84610192 | None:intergenic |
| ATCATAGTGCGTTTACTGTT+GGG | 0.406603 | 3_3:-84607880 | Msa0479620:CDS |
| GAACGAAATTGAGCGAAATT+GGG | 0.410230 | 3_3:+84610281 | None:intergenic |
| TTGGTCTTCTTCACTTGTTA+GGG | 0.416132 | 3_3:-84610334 | Msa0479620:five_prime_UTR |
| CACTCTTCGCCATGATGAGT+TGG | 0.420792 | 3_3:-84608456 | Msa0479620:CDS |
| TTCACCCTACTAGTTGCAAT+CGG | 0.422424 | 3_3:-84605774 | Msa0479620:three_prime_UTR |
| ATCCTCCTCTGCAATATGTT+TGG | 0.422847 | 3_3:+84605826 | None:intergenic |
| GTTCTTCAGCTAGTGTTGCT+TGG | 0.427729 | 3_3:-84608722 | Msa0479620:CDS |
| ACTTCTCTGCCTGGTCATAT+AGG | 0.427888 | 3_3:+84608307 | None:intergenic |
| ATTGTGATTCATAGATTTGA+AGG | 0.432257 | 3_3:-84610106 | Msa0479620:intron |
| TGTCGTTATCTCTTCTACCT+CGG | 0.432513 | 3_3:-84608018 | Msa0479620:CDS |
| GTCGTTATCTCTTCTACCTC+GGG | 0.434794 | 3_3:-84608017 | Msa0479620:CDS |
| TCTTATAGTCCTTCACCATA+TGG | 0.437672 | 3_3:-84605649 | Msa0479620:three_prime_UTR |
| CCATGAACTTACTGGAGATC+TGG | 0.437963 | 3_3:-84608631 | Msa0479620:CDS |
| CCAAGCAATGCTGATTCAAC+AGG | 0.440687 | 3_3:+84605470 | None:intergenic |
| TAACAGTAAATTTCTAGCTC+AGG | 0.444215 | 3_3:+84608889 | None:intergenic |
| AAATGGGTGGATGGTGTCTA+AGG | 0.451020 | 3_3:-84606026 | Msa0479620:CDS |
| TTGACCTCAACTTCTCTGCC+TGG | 0.452207 | 3_3:+84608298 | None:intergenic |
| TCGCCATGATGAGTTGGGTC+AGG | 0.453949 | 3_3:-84608450 | Msa0479620:intron |
| ATGCTCTCAGCATCAGCAAC+AGG | 0.456927 | 3_3:+84606100 | None:intergenic |
| TATCATAGTGCGTTTACTGT+TGG | 0.459477 | 3_3:-84607881 | Msa0479620:CDS |
| TGGATGGTGTCTAAGGAAAC+AGG | 0.461685 | 3_3:-84606019 | Msa0479620:CDS |
| ACTAGCTGAAGAACAAGCTT+TGG | 0.471713 | 3_3:+84608731 | None:intergenic |
| AGTGTTTAGCTGTAGGGGTA+GGG | 0.475084 | 3_3:+84608917 | None:intergenic |
| AGATCCCGATTGCAACTAGT+AGG | 0.484380 | 3_3:+84605769 | None:intergenic |
| GTGTTTAGCTGTAGGGGTAG+GGG | 0.484533 | 3_3:+84608918 | None:intergenic |
| TGCGAAGCAGCAAATTAAGA+AGG | 0.487151 | 3_3:+84608346 | None:intergenic |
| GCAACAAGTGTTTAGCTGTA+GGG | 0.489547 | 3_3:+84608911 | None:intergenic |
| AACTTCCTTCGAGTAAGAAC+CGG | 0.493423 | 3_3:+84610062 | None:intergenic |
| GCTACATTGGATCATGCAAA+TGG | 0.497010 | 3_3:-84606043 | Msa0479620:CDS |
| CTGTCGATGTTATTGCATCT+AGG | 0.500017 | 3_3:-84608677 | Msa0479620:CDS |
| AGATGGAACTTGTGGAGAAA+CGG | 0.500179 | 3_3:+84610209 | None:intergenic |
| CTCCACGCATGAGCCTCAGC+TGG | 0.501442 | 3_3:-84605987 | Msa0479620:CDS |
| TCACCCTACTAGTTGCAATC+GGG | 0.501446 | 3_3:-84605773 | Msa0479620:three_prime_UTR |
| GTCTCCGACATAATGTCATC+AGG | 0.501605 | 3_3:-84606207 | Msa0479620:CDS |
| ACTCTTCGCCATGATGAGTT+GGG | 0.503587 | 3_3:-84608455 | Msa0479620:CDS |
| ACAACAGCAAGAGCAGGAAC+TGG | 0.505747 | 3_3:-84605849 | Msa0479620:CDS |
| GAATTCCAGGCTGTCCGCAT+TGG | 0.508181 | 3_3:-84606310 | Msa0479620:intron |
| GTGTCGAAGGCTATTCGTGA+TGG | 0.511320 | 3_3:-84606076 | Msa0479620:CDS |
| CCTGTTGAATCAGCATTGCT+TGG | 0.512911 | 3_3:-84605470 | Msa0479620:three_prime_UTR |
| ACATTTGTAAGCTCAAAGTA+AGG | 0.517576 | 3_3:+84607802 | None:intergenic |
| ATGAGTTCCGTCTGCACTGA+AGG | 0.520485 | 3_3:+84606243 | None:intergenic |
| GTAAAGCTCCAGTTGCAGCT+CGG | 0.520793 | 3_3:-84607933 | Msa0479620:CDS |
| TGTCGAAGGCTATTCGTGAT+GGG | 0.522093 | 3_3:-84606075 | Msa0479620:CDS |
| GTAAGAACCGGTCTCAATAA+CGG | 0.524017 | 3_3:+84610074 | None:intergenic |
| AGAGAGACAACAGCAAGAGC+AGG | 0.524456 | 3_3:-84605855 | Msa0479620:CDS |
| GAAACCTACTTGCATTGCAT+CGG | 0.524818 | 3_3:-84608484 | Msa0479620:CDS |
| GGAGGATGATCATGAGATGG+AGG | 0.525489 | 3_3:-84608968 | Msa0479620:CDS |
| AAGTGTTTAGCTGTAGGGGT+AGG | 0.526202 | 3_3:+84608916 | None:intergenic |
| AGCTAGTGAGATGCGAGAAT+AGG | 0.527722 | 3_3:+84606159 | None:intergenic |
| ATTGTGCATGTTAAGACAGA+AGG | 0.528644 | 3_3:+84605946 | None:intergenic |
| ATATGGTGAAGGACTATAAG+AGG | 0.528701 | 3_3:+84605651 | None:intergenic |
| TGAAGCACATTCAAACCAGC+AGG | 0.534748 | 3_3:-84608262 | Msa0479620:intron |
| CGAACTGTCTTTATGCAGAA+AGG | 0.537836 | 3_3:-84607844 | Msa0479620:CDS |
| TGTAGGGGTAGGGGTTTGAA+TGG | 0.543905 | 3_3:+84608927 | None:intergenic |
| TTCGAATTCAATGTAACAAG+TGG | 0.544110 | 3_3:-84607906 | Msa0479620:CDS |
| TGCATAAAGACAGTTCGCTC+AGG | 0.545859 | 3_3:+84607850 | None:intergenic |
| CGACATAATGTCATCAGGAC+TGG | 0.551358 | 3_3:-84606202 | Msa0479620:CDS |
| GGCAGAGAAGTTGAGGTCAA+AGG | 0.552276 | 3_3:-84608295 | Msa0479620:CDS |
| AACAGACTGAGATTTCCATA+TGG | 0.554794 | 3_3:+84605634 | None:intergenic |
| GACAGAATGTGTCGCCCAGA+TGG | 0.554889 | 3_3:-84605411 | Msa0479620:three_prime_UTR |
| GGCAACAAGTGTTTAGCTGT+AGG | 0.555242 | 3_3:+84608910 | None:intergenic |
| TGTCTTTATGCAGAAAGGAA+TGG | 0.555289 | 3_3:-84607839 | Msa0479620:CDS |
| AAACCTGACCCAACTCATCA+TGG | 0.555876 | 3_3:+84608447 | None:intergenic |
| TTAGCATGAGGTTCAGAACC+AGG | 0.559671 | 3_3:+84609946 | None:intergenic |
| GCGAAGCAGCAAATTAAGAA+GGG | 0.562737 | 3_3:+84608347 | None:intergenic |
| TGCTGAGAGCATTGTGTCGA+AGG | 0.568158 | 3_3:-84606089 | Msa0479620:CDS |
| GGATGATCATGAGATGGAGG+TGG | 0.570304 | 3_3:-84608965 | Msa0479620:CDS |
| TCGAATTCAATGTAACAAGT+GGG | 0.570948 | 3_3:-84607905 | Msa0479620:CDS |
| TTCGAACATAATTACTAGCA+AGG | 0.576402 | 3_3:+84605526 | None:intergenic |
| ATGACCAGGCAGAGAAGTTG+AGG | 0.578368 | 3_3:-84608302 | Msa0479620:CDS |
| ATAGGAGGATGATCATGAGA+TGG | 0.579908 | 3_3:-84608971 | Msa0479620:intron |
| CAACAAGTGTTTAGCTGTAG+GGG | 0.588492 | 3_3:+84608912 | None:intergenic |
| ATAGCGTCCGTTATTGAGAC+CGG | 0.589430 | 3_3:-84610081 | Msa0479620:CDS |
| GGCCAAACATATTGCAGAGG+AGG | 0.589837 | 3_3:-84605828 | Msa0479620:CDS |
| CAACTCATCATGGCGAAGAG+TGG | 0.590059 | 3_3:+84608457 | None:intergenic |
| GCAACCACCTTCAGTGCAGA+CGG | 0.594746 | 3_3:-84606250 | Msa0479620:CDS |
| GATCCCGATTGCAACTAGTA+GGG | 0.595058 | 3_3:+84605770 | None:intergenic |
| TGGGGCAATTGATGCTACAT+TGG | 0.595169 | 3_3:-84606056 | Msa0479620:CDS |
| CTACATTGGATCATGCAAAT+GGG | 0.597867 | 3_3:-84606042 | Msa0479620:CDS |
| ATGGAAATATAAGCAAATGT+CGG | 0.598463 | 3_3:+84605738 | None:intergenic |
| CAATCCGATGCAATGCAAGT+AGG | 0.600803 | 3_3:+84608480 | None:intergenic |
| CTGAGATTTCCATATGGTGA+AGG | 0.602143 | 3_3:+84605640 | None:intergenic |
| AAAGCTCCAGTTGCAGCTCG+GGG | 0.611705 | 3_3:-84607931 | Msa0479620:CDS |
| TACGCAGACAATTTAGCATG+AGG | 0.613498 | 3_3:+84609934 | None:intergenic |
| AGCCAGCTGAGGCTCATGCG+TGG | 0.615404 | 3_3:+84605985 | None:intergenic |
| GGTCATTCAGAGTAACACCT+TGG | 0.617949 | 3_3:+84605491 | None:intergenic |
| GGTTTGAATGGAAGATGTTG+TGG | 0.620968 | 3_3:+84608939 | None:intergenic |
| GGATCATGCAAATGGGTGGA+TGG | 0.621270 | 3_3:-84606035 | Msa0479620:CDS |
| TTTGAATGTGCTTCAAATCG+TGG | 0.621618 | 3_3:+84608270 | None:intergenic |
| TGAGACCGGTTCTTACTCGA+AGG | 0.622392 | 3_3:-84610067 | Msa0479620:CDS |
| ATTGTCTGCGTATCTTCCCA+AGG | 0.623168 | 3_3:-84609923 | Msa0479620:intron |
| GGAGATCTGGCTGAAATTCG+GGG | 0.623695 | 3_3:-84608618 | Msa0479620:CDS |
| TGCAAAGTAGATGGAACTTG+TGG | 0.628606 | 3_3:+84610201 | None:intergenic |
| CGAGAATTGAAAGCCAGCTG+AGG | 0.642823 | 3_3:+84605974 | None:intergenic |
| GTCGAAGGCTATTCGTGATG+GGG | 0.643333 | 3_3:-84606074 | Msa0479620:CDS |
| CAGTCCTGATGACATTATGT+CGG | 0.646136 | 3_3:+84606203 | None:intergenic |
| TCACTACAACCTATATGACC+AGG | 0.647246 | 3_3:-84608316 | Msa0479620:CDS |
| TGTGGAGAAACGGAATTCGA+AGG | 0.647707 | 3_3:+84610219 | None:intergenic |
| TTCGTCTTACAATTGCATTG+AGG | 0.658485 | 3_3:-84610020 | Msa0479620:CDS |
| GAGATCTGGCTGAAATTCGG+GGG | 0.660656 | 3_3:-84608617 | Msa0479620:intron |
| CATTGGATCATGCAAATGGG+TGG | 0.661664 | 3_3:-84606039 | Msa0479620:CDS |
| AGTTCCGTCTGCACTGAAGG+TGG | 0.692083 | 3_3:+84606246 | None:intergenic |
| ACTGGCCAAACATATTGCAG+AGG | 0.692977 | 3_3:-84605831 | Msa0479620:CDS |
| AGACCAAACAAGAAGCAACG+TGG | 0.750508 | 3_3:+84610350 | None:intergenic |
| ACAGCTCCAAATCTCCAATG+CGG | 0.755080 | 3_3:+84606296 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATACGATTTATAAAT+AGG | + | chr3_3:84605920-84605939 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTGTACTTTT+TGG | - | chr3_3:84607638-84607657 | Msa0479620:intron | 10.0% |
| !!! | CATTTTTAATAAAGAAAAAT+TGG | + | chr3_3:84608456-84608475 | None:intergenic | 10.0% |
| !! | TTAATAATTATAGATTCAAT+TGG | + | chr3_3:84609195-84609214 | None:intergenic | 10.0% |
| !!! | TTTTTTTTGTTGGTTATTTA+GGG | - | chr3_3:84605999-84606018 | Msa0479620:CDS | 15.0% |
| !! | GTAATTTAGATTAAGAATTA+AGG | + | chr3_3:84606566-84606585 | None:intergenic | 15.0% |
| !! | AATTCTTAATCTAAATTACT+AGG | - | chr3_3:84606567-84606586 | Msa0479620:intron | 15.0% |
| !!! | TGTCTGATTTTTTATATTTT+AGG | - | chr3_3:84607015-84607034 | Msa0479620:intron | 15.0% |
| !! | TCTATATAATCAATAAATCA+AGG | - | chr3_3:84607194-84607213 | Msa0479620:intron | 15.0% |
| !! | ATATATTATTATGACAAACA+AGG | + | chr3_3:84608013-84608032 | None:intergenic | 15.0% |
| !! | TATTAAAAATGTCAAAACAA+AGG | - | chr3_3:84608465-84608484 | Msa0479620:CDS | 15.0% |
| !! | ATTAAAAATGTCAAAACAAA+GGG | - | chr3_3:84608466-84608485 | Msa0479620:CDS | 15.0% |
| !! | TAATTATTAATGTTATCTCA+AGG | - | chr3_3:84609205-84609224 | Msa0479620:intron | 15.0% |
| !!! | AAATGCATAAAATATTCTTT+TGG | + | chr3_3:84609292-84609311 | None:intergenic | 15.0% |
| !! | TGAAAAAAAGTCAATTAATT+AGG | - | chr3_3:84610219-84610238 | Msa0479620:CDS | 15.0% |
| !! | CAAAATTCACAAATTGAAAA+CGG | + | chr3_3:84605641-84605660 | None:intergenic | 20.0% |
| !! | TTAACTTAGATTTAGCATTT+AGG | - | chr3_3:84605887-84605906 | Msa0479620:CDS | 20.0% |
| !! | TAACTTAGATTTAGCATTTA+GGG | - | chr3_3:84605888-84605907 | Msa0479620:CDS | 20.0% |
| !!! | GATGAATTAGTTTTTTTTGT+TGG | - | chr3_3:84605989-84606008 | Msa0479620:CDS | 20.0% |
| !!! | GTTTTTTTTGTTGGTTATTT+AGG | - | chr3_3:84605998-84606017 | Msa0479620:CDS | 20.0% |
| !! | GTAGTTTCAATTAAGAATTA+GGG | + | chr3_3:84606178-84606197 | None:intergenic | 20.0% |
| !!! | TGTTTTCTATGATTGTATTT+AGG | - | chr3_3:84606277-84606296 | Msa0479620:CDS | 20.0% |
| !!! | GTTTTCTATGATTGTATTTA+GGG | - | chr3_3:84606278-84606297 | Msa0479620:CDS | 20.0% |
| !! | TAAACACTTAAATGATAATC+AGG | - | chr3_3:84606501-84606520 | Msa0479620:intron | 20.0% |
| !! | TATCTTCATCAGAAAATATT+AGG | - | chr3_3:84606705-84606724 | Msa0479620:intron | 20.0% |
| !! | ATATAATCAATAAATCAAGG+AGG | - | chr3_3:84607197-84607216 | Msa0479620:intron | 20.0% |
| !!! | AACTTGTTTAAATCTTTTTG+TGG | - | chr3_3:84607248-84607267 | Msa0479620:intron | 20.0% |
| !!! | GAGAAGATTTTTTTATGTTA+GGG | - | chr3_3:84607359-84607378 | Msa0479620:intron | 20.0% |
| !! | GATAAGTTATAACTAAAAAG+TGG | + | chr3_3:84608151-84608170 | None:intergenic | 20.0% |
| !! | CTAACAAACATCTAATTTAT+AGG | + | chr3_3:84608405-84608424 | None:intergenic | 20.0% |
| !! | TTAAAAATGTCAAAACAAAG+GGG | - | chr3_3:84608467-84608486 | Msa0479620:CDS | 20.0% |
| !!! | GAGTACTTTTTGTATATAAA+TGG | - | chr3_3:84608664-84608683 | Msa0479620:CDS | 20.0% |
| !!! | TTTTTGAATGTTCTAAATAC+AGG | - | chr3_3:84608837-84608856 | Msa0479620:intron | 20.0% |
| !! | TAAACTCTTAATCTCTTTAA+TGG | + | chr3_3:84608881-84608900 | None:intergenic | 20.0% |
| !! | TGAGAGATAGAAAATAAATA+AGG | - | chr3_3:84608991-84609010 | Msa0479620:intron | 20.0% |
| !! | GCAACAATTAACTATATTTA+GGG | + | chr3_3:84609039-84609058 | None:intergenic | 20.0% |
| !!! | AGAATATTTTATGCATTTGT+TGG | - | chr3_3:84609294-84609313 | Msa0479620:intron | 20.0% |
| !!! | GAAATTTTCAACTTTTGAAA+GGG | + | chr3_3:84610081-84610100 | None:intergenic | 20.0% |
| !!! | TGAAATTTTCAACTTTTGAA+AGG | + | chr3_3:84610082-84610101 | None:intergenic | 20.0% |
| !!! | TGAAAATTTCATTTTCTACA+TGG | - | chr3_3:84610091-84610110 | Msa0479620:CDS | 20.0% |
| !! | CGTTTTCAATTTGTGAATTT+TGG | - | chr3_3:84605639-84605658 | Msa0479620:three_prime_UTR | 25.0% |
| ! | ATTGTGATTCATAGATTTGA+AGG | - | chr3_3:84605663-84605682 | Msa0479620:three_prime_UTR | 25.0% |
| ! | TTAAATCTACCATTGCATTT+AGG | - | chr3_3:84605966-84605985 | Msa0479620:CDS | 25.0% |
| ! | TAAATCTACCATTGCATTTA+GGG | - | chr3_3:84605967-84605986 | Msa0479620:CDS | 25.0% |
| !! | GACTATTTTCATACAGTTTA+TGG | + | chr3_3:84606093-84606112 | None:intergenic | 25.0% |
| ! | CGTAGTTTCAATTAAGAATT+AGG | + | chr3_3:84606179-84606198 | None:intergenic | 25.0% |
| ! | AATTCTTAATTGAAACTACG+AGG | - | chr3_3:84606179-84606198 | Msa0479620:CDS | 25.0% |
| ! | ATTCTTAATTGAAACTACGA+GGG | - | chr3_3:84606180-84606199 | Msa0479620:CDS | 25.0% |
| !! | ATTTTCATAACCTATCATAG+AGG | + | chr3_3:84606437-84606456 | None:intergenic | 25.0% |
| ! | GATTAAGAATTAAGGATGTT+TGG | + | chr3_3:84606558-84606577 | None:intergenic | 25.0% |
| !! | TTTTCTGATGAAGATAGAAA+GGG | + | chr3_3:84606701-84606720 | None:intergenic | 25.0% |
| !! | ATTTTCTGATGAAGATAGAA+AGG | + | chr3_3:84606702-84606721 | None:intergenic | 25.0% |
| !!! | AATTTTGTCACTGATTGTAT+AGG | - | chr3_3:84606780-84606799 | Msa0479620:intron | 25.0% |
| ! | TGAAAACATAAAAGCAATAC+AGG | + | chr3_3:84606959-84606978 | None:intergenic | 25.0% |
| !!! | GGAGAAGATTTTTTTATGTT+AGG | - | chr3_3:84607358-84607377 | Msa0479620:intron | 25.0% |
| ! | AAGGAGTAAGAATTAACAAA+AGG | + | chr3_3:84607691-84607710 | None:intergenic | 25.0% |
| ! | AATACTCCATAAAAACTAGT+CGG | + | chr3_3:84608098-84608117 | None:intergenic | 25.0% |
| ! | ACTACTACTAAAAAAAGAAG+TGG | - | chr3_3:84608180-84608199 | Msa0479620:intron | 25.0% |
| ! | CTACTACTAAAAAAAGAAGT+GGG | - | chr3_3:84608181-84608200 | Msa0479620:intron | 25.0% |
| ! | AAACACTCCTAAAAAATAAG+CGG | + | chr3_3:84608247-84608266 | None:intergenic | 25.0% |
| ! | AGCAAGTTAAAACTAAAAAG+TGG | + | chr3_3:84608318-84608337 | None:intergenic | 25.0% |
| ! | AATAGTCCTAAACAATAAGT+GGG | - | chr3_3:84608340-84608359 | Msa0479620:CDS | 25.0% |
| ! | CAAACATCTAATTTATAGGT+GGG | + | chr3_3:84608401-84608420 | None:intergenic | 25.0% |
| ! | ACAAACATCTAATTTATAGG+TGG | + | chr3_3:84608402-84608421 | None:intergenic | 25.0% |
| !!! | TACAAAAAGTACTCATCATT+TGG | + | chr3_3:84608658-84608677 | None:intergenic | 25.0% |
| ! | ATAAGCATTTCATTACATCT+CGG | + | chr3_3:84608745-84608764 | None:intergenic | 25.0% |
| ! | CGCAACAATTAACTATATTT+AGG | + | chr3_3:84609040-84609059 | None:intergenic | 25.0% |
| ! | GAAGAAAGAAAATGGTTTAT+TGG | - | chr3_3:84609059-84609078 | Msa0479620:intron | 25.0% |
| !! | ATAAAATATTCTTTTGGCAC+AGG | + | chr3_3:84609286-84609305 | None:intergenic | 25.0% |
| !! | TCATTTGTTAATTCTCCATT+TGG | - | chr3_3:84609379-84609398 | Msa0479620:intron | 25.0% |
| ! | TATAGCAAATAACACAAGTA+TGG | + | chr3_3:84609409-84609428 | None:intergenic | 25.0% |
| ! | ATGGAAATATAAGCAAATGT+CGG | + | chr3_3:84610034-84610053 | None:intergenic | 25.0% |
| !!! | ATTCATGATGATGACTTTTA+TGG | - | chr3_3:84610161-84610180 | Msa0479620:intron | 25.0% |
| !!! | CTTTTATGGTTTGTTTCTTT+CGG | - | chr3_3:84610175-84610194 | Msa0479620:intron | 25.0% |
| !!! | TTTTATGGTTTGTTTCTTTC+GGG | - | chr3_3:84610176-84610195 | Msa0479620:intron | 25.0% |
| !! | TCGAAGTTTTTATTATTCCA+AGG | - | chr3_3:84610261-84610280 | Msa0479620:exon | 25.0% |
| !! | GAATGTTGTAAACTCTTTTT+AGG | - | chr3_3:84610321-84610340 | Msa0479620:five_prime_UTR | 25.0% |
| TTAACACAAGTTTGTACCTT+GGG | + | chr3_3:84605865-84605884 | None:intergenic | 30.0% | |
| ATTAACACAAGTTTGTACCT+TGG | + | chr3_3:84605866-84605885 | None:intergenic | 30.0% | |
| TAATTCATCCCTAAATGCAA+TGG | + | chr3_3:84605978-84605997 | None:intergenic | 30.0% | |
| TTCTTAATTGAAACTACGAG+GGG | - | chr3_3:84606181-84606200 | Msa0479620:CDS | 30.0% | |
| ! | GACTTTTTGACAGATCTTTT+AGG | - | chr3_3:84606387-84606406 | Msa0479620:intron | 30.0% |
| !!! | TTCTCTTCCTTTGTTTTTGA+CGG | - | chr3_3:84606731-84606750 | Msa0479620:intron | 30.0% |
| !! | TAACAGTAAATTTCTAGCTC+AGG | + | chr3_3:84606883-84606902 | None:intergenic | 30.0% |
| TGATCAGAAAAAATACAACG+AGG | - | chr3_3:84606927-84606946 | Msa0479620:intron | 30.0% | |
| ! | ATGTTTTCAACTATGCAAAC+TGG | - | chr3_3:84606970-84606989 | Msa0479620:intron | 30.0% |
| ATCAATAAGCTTCATCACAA+GGG | + | chr3_3:84607620-84607639 | None:intergenic | 30.0% | |
| AATCAATAAGCTTCATCACA+AGG | + | chr3_3:84607621-84607640 | None:intergenic | 30.0% | |
| GAAAATTCGGACTATTCAAT+TGG | - | chr3_3:84607774-84607793 | Msa0479620:intron | 30.0% | |
| TTCGAATTCAATGTAACAAG+TGG | - | chr3_3:84607863-84607882 | Msa0479620:CDS | 30.0% | |
| TCGAATTCAATGTAACAAGT+GGG | - | chr3_3:84607864-84607883 | Msa0479620:CDS | 30.0% | |
| ACATTTGTAAGCTCAAAGTA+AGG | + | chr3_3:84607970-84607989 | None:intergenic | 30.0% | |
| ACAAATGTAAGTCCACATTA+TGG | - | chr3_3:84607982-84608001 | Msa0479620:CDS | 30.0% | |
| !!! | TTTACACCCGCTTATTTTTT+AGG | - | chr3_3:84608237-84608256 | Msa0479620:intron | 30.0% |
| AACACTCCTAAAAAATAAGC+GGG | + | chr3_3:84608246-84608265 | None:intergenic | 30.0% | |
| TTAGAAACTGTTAACTGAAG+TGG | - | chr3_3:84608266-84608285 | Msa0479620:CDS | 30.0% | |
| ! | CACTTATTGTTTAGGACTAT+TGG | + | chr3_3:84608341-84608360 | None:intergenic | 30.0% |
| CAATAGTCCTAAACAATAAG+TGG | - | chr3_3:84608339-84608358 | Msa0479620:CDS | 30.0% | |
| AAAGAAAGATGACAATGTGA+AGG | + | chr3_3:84608576-84608595 | None:intergenic | 30.0% | |
| ! | TTTTCTTCAACAATTGAGCT+AGG | + | chr3_3:84608605-84608624 | None:intergenic | 30.0% |
| ! | TTCACTATTTTCTGAGCATT+TGG | + | chr3_3:84608635-84608654 | None:intergenic | 30.0% |
| ATTGTTGCGAAGAAAGAAAA+TGG | - | chr3_3:84609051-84609070 | Msa0479620:intron | 30.0% | |
| ! | CACCTTTTAATGTTATCTCA+AGG | - | chr3_3:84609112-84609131 | Msa0479620:intron | 30.0% |
| ATTCCTTCTCAGATAAACTA+TGG | + | chr3_3:84609138-84609157 | None:intergenic | 30.0% | |
| !!! | GGTTCTATTTTTTCAGTCTT+TGG | - | chr3_3:84609315-84609334 | Msa0479620:intron | 30.0% |
| ! | TGTTAGTTTAGCTTATGTTG+TGG | - | chr3_3:84609437-84609456 | Msa0479620:intron | 30.0% |
| CTAATGGAAGTTCTTCATAA+TGG | + | chr3_3:84610053-84610072 | None:intergenic | 30.0% | |
| !! | TTTTGAAAGGGAAATGCTAA+TGG | + | chr3_3:84610069-84610088 | None:intergenic | 30.0% |
| ! | TTTCGGGATAATTGTGTTTT+TGG | - | chr3_3:84610192-84610211 | Msa0479620:intron | 30.0% |
| TTCGAACATAATTACTAGCA+AGG | + | chr3_3:84610246-84610265 | None:intergenic | 30.0% | |
| ! | TGGTGTAATTTTATCCATCT+GGG | + | chr3_3:84610375-84610394 | None:intergenic | 30.0% |
| ! | ATGGTGTAATTTTATCCATC+TGG | + | chr3_3:84610376-84610395 | None:intergenic | 30.0% |
| ! | TTTGGTCTTCTTCACTTGTT+AGG | - | chr3_3:84605434-84605453 | Msa0479620:three_prime_UTR | 35.0% |
| ! | TTGGTCTTCTTCACTTGTTA+GGG | - | chr3_3:84605435-84605454 | Msa0479620:three_prime_UTR | 35.0% |
| GAACGAAATTGAGCGAAATT+GGG | + | chr3_3:84605491-84605510 | None:intergenic | 35.0% | |
| TGAACGAAATTGAGCGAAAT+TGG | + | chr3_3:84605492-84605511 | None:intergenic | 35.0% | |
| TGAGATGTGAAATCGATAGA+CGG | + | chr3_3:84605606-84605625 | None:intergenic | 35.0% | |
| TTCGTCTTACAATTGCATTG+AGG | - | chr3_3:84605749-84605768 | Msa0479620:three_prime_UTR | 35.0% | |
| GTTGGTTATTTAGGGATGTT+TGG | - | chr3_3:84606007-84606026 | Msa0479620:CDS | 35.0% | |
| GTTATTTAGGGATGTTTGGA+TGG | - | chr3_3:84606011-84606030 | Msa0479620:CDS | 35.0% | |
| ACACTTGTGGAAACAACTTA+AGG | - | chr3_3:84606062-84606081 | Msa0479620:CDS | 35.0% | |
| ! | TACTTGCAACTTTTGCAACA+TGG | - | chr3_3:84606236-84606255 | Msa0479620:CDS | 35.0% |
| ! | TCTTTCTTGTTCTGCTGTTT+AGG | - | chr3_3:84606322-84606341 | Msa0479620:intron | 35.0% |
| ! | CTTTCTTGTTCTGCTGTTTA+GGG | - | chr3_3:84606323-84606342 | Msa0479620:intron | 35.0% |
| AAGTGTTTATGTCAGGAGAT+AGG | + | chr3_3:84606363-84606382 | None:intergenic | 35.0% | |
| TTCCATAAGTCCTCTATGAT+AGG | - | chr3_3:84606424-84606443 | Msa0479620:intron | 35.0% | |
| AACCTATCATAGAGGACTTA+TGG | + | chr3_3:84606429-84606448 | None:intergenic | 35.0% | |
| AAAGTCACAAGCAGTAAATG+GGG | + | chr3_3:84606620-84606639 | None:intergenic | 35.0% | |
| CAAAGTCACAAGCAGTAAAT+GGG | + | chr3_3:84606621-84606640 | None:intergenic | 35.0% | |
| ACAAAGTCACAAGCAGTAAA+TGG | + | chr3_3:84606622-84606641 | None:intergenic | 35.0% | |
| TGAAGATAGAAAGGGAAAGA+GGG | + | chr3_3:84606693-84606712 | None:intergenic | 35.0% | |
| ATGAAGATAGAAAGGGAAAG+AGG | + | chr3_3:84606694-84606713 | None:intergenic | 35.0% | |
| !!! | TCTCTTCCTTTGTTTTTGAC+GGG | - | chr3_3:84606732-84606751 | Msa0479620:intron | 35.0% |
| CTATTTCCCGTCAAAAACAA+AGG | + | chr3_3:84606741-84606760 | None:intergenic | 35.0% | |
| ! | TTTTTGACGGGAAATAGCAA+TGG | - | chr3_3:84606744-84606763 | Msa0479620:intron | 35.0% |
| ! | TTTGTCACTGATTGTATAGG+AGG | - | chr3_3:84606783-84606802 | Msa0479620:intron | 35.0% |
| TCAGAAAAAGTAGTACAAGC+AGG | + | chr3_3:84606906-84606925 | None:intergenic | 35.0% | |
| GGCAAATAATTGAATGCTCA+TGG | - | chr3_3:84606991-84607010 | Msa0479620:intron | 35.0% | |
| TCATATAGCCATGAACTTAC+TGG | - | chr3_3:84607130-84607149 | Msa0479620:intron | 35.0% | |
| TCAGGTTTGTGTTCTACTTA+TGG | - | chr3_3:84607337-84607356 | Msa0479620:intron | 35.0% | |
| CTTACCTGTTGATGTATTTC+AGG | - | chr3_3:84607396-84607415 | Msa0479620:intron | 35.0% | |
| GTTTCCTGAAATACATCAAC+AGG | + | chr3_3:84607403-84607422 | None:intergenic | 35.0% | |
| TTTGAATGTGCTTCAAATCG+TGG | + | chr3_3:84607502-84607521 | None:intergenic | 35.0% | |
| ! | ACGAATTTCTTTTGTGCTCA+TGG | + | chr3_3:84607549-84607568 | None:intergenic | 35.0% |
| !! | GAGCACTGGAATAAAAAGTA+TGG | + | chr3_3:84607579-84607598 | None:intergenic | 35.0% |
| TATCATAGTGCGTTTACTGT+TGG | - | chr3_3:84607888-84607907 | Msa0479620:CDS | 35.0% | |
| ATCATAGTGCGTTTACTGTT+GGG | - | chr3_3:84607889-84607908 | Msa0479620:CDS | 35.0% | |
| TGTCTTTATGCAGAAAGGAA+TGG | - | chr3_3:84607930-84607949 | Msa0479620:CDS | 35.0% | |
| AACAAGGTTGAACCATAATG+TGG | + | chr3_3:84607997-84608016 | None:intergenic | 35.0% | |
| ATAAAAACTAGTCGGTGTAG+TGG | + | chr3_3:84608090-84608109 | None:intergenic | 35.0% | |
| !!! | ACTACACCGACTAGTTTTTA+TGG | - | chr3_3:84608089-84608108 | Msa0479620:intron | 35.0% |
| !! | ATTTTAGCAACATGCACCTT+AGG | - | chr3_3:84608115-84608134 | Msa0479620:intron | 35.0% |
| ! | TTTTAGCAACATGCACCTTA+GGG | - | chr3_3:84608116-84608135 | Msa0479620:intron | 35.0% |
| TGTATTCTAGCAAATGCCTA+TGG | - | chr3_3:84608204-84608223 | Msa0479620:intron | 35.0% | |
| GTATTCTAGCAAATGCCTAT+GGG | - | chr3_3:84608205-84608224 | Msa0479620:intron | 35.0% | |
| TGTAAATTAGTAGCTCCCAT+AGG | + | chr3_3:84608223-84608242 | None:intergenic | 35.0% | |
| ! | TTTTCTTCATCCATGTGTTG+TGG | + | chr3_3:84608694-84608713 | None:intergenic | 35.0% |
| ! | GAATGTTCTAAATACAGGTG+TGG | - | chr3_3:84608842-84608861 | Msa0479620:intron | 35.0% |
| GGAAAAAATGGAAGGGAAAA+AGG | + | chr3_3:84608946-84608965 | None:intergenic | 35.0% | |
| GGTTTATTGGTCCATGTAAA+AGG | - | chr3_3:84609072-84609091 | Msa0479620:intron | 35.0% | |
| GGCCTTGAGATAACATTAAA+AGG | + | chr3_3:84609117-84609136 | None:intergenic | 35.0% | |
| CAACCTTTCTTGCACAATTT+AGG | - | chr3_3:84609243-84609262 | Msa0479620:intron | 35.0% | |
| ! | AAATATTCTTTTGGCACAGG+TGG | + | chr3_3:84609283-84609302 | None:intergenic | 35.0% |
| CACAAGTATGGATATCCAAA+TGG | + | chr3_3:84609397-84609416 | None:intergenic | 35.0% | |
| CTGATGTTGCTAAAAAGTTG+AGG | - | chr3_3:84609631-84609650 | Msa0479620:intron | 35.0% | |
| TGTTGCTAAAAAGTTGAGGT+TGG | - | chr3_3:84609635-84609654 | Msa0479620:intron | 35.0% | |
| CTACATTGGATCATGCAAAT+GGG | - | chr3_3:84609727-84609746 | Msa0479620:intron | 35.0% | |
| ATTGTGCATGTTAAGACAGA+AGG | + | chr3_3:84609826-84609845 | None:intergenic | 35.0% | |
| ATATGGTGAAGGACTATAAG+AGG | + | chr3_3:84610121-84610140 | None:intergenic | 35.0% | |
| TCTTATAGTCCTTCACCATA+TGG | - | chr3_3:84610120-84610139 | Msa0479620:intron | 35.0% | |
| AACAGACTGAGATTTCCATA+TGG | + | chr3_3:84610138-84610157 | None:intergenic | 35.0% | |
| AGATGGAACTTGTGGAGAAA+CGG | + | chr3_3:84605563-84605582 | None:intergenic | 40.0% | |
| TGCAAAGTAGATGGAACTTG+TGG | + | chr3_3:84605571-84605590 | None:intergenic | 40.0% | |
| TTCTTACGCTGCAAAGTAGA+TGG | + | chr3_3:84605580-84605599 | None:intergenic | 40.0% | |
| GTAAGAACCGGTCTCAATAA+CGG | + | chr3_3:84605698-84605717 | None:intergenic | 40.0% | |
| AACTTCCTTCGAGTAAGAAC+CGG | + | chr3_3:84605710-84605729 | None:intergenic | 40.0% | |
| TACGCAGACAATTTAGCATG+AGG | + | chr3_3:84605838-84605857 | None:intergenic | 40.0% | |
| ACTTATTTGAGCTTGCCTAC+TGG | - | chr3_3:84606034-84606053 | Msa0479620:CDS | 40.0% | |
| ATAGGAGGATGATCATGAGA+TGG | - | chr3_3:84606798-84606817 | Msa0479620:intron | 40.0% | |
| GGTTTGAATGGAAGATGTTG+TGG | + | chr3_3:84606833-84606852 | None:intergenic | 40.0% | |
| CAACAAGTGTTTAGCTGTAG+GGG | + | chr3_3:84606860-84606879 | None:intergenic | 40.0% | |
| GCAACAAGTGTTTAGCTGTA+GGG | + | chr3_3:84606861-84606880 | None:intergenic | 40.0% | |
| ACTAGCTGAAGAACAAGCTT+TGG | + | chr3_3:84607041-84607060 | None:intergenic | 40.0% | |
| CTGTCGATGTTATTGCATCT+AGG | - | chr3_3:84607092-84607111 | Msa0479620:intron | 40.0% | |
| GAAACCTACTTGCATTGCAT+CGG | - | chr3_3:84607285-84607304 | Msa0479620:intron | 40.0% | |
| GCGAAGCAGCAAATTAAGAA+GGG | + | chr3_3:84607425-84607444 | None:intergenic | 40.0% | |
| TGCGAAGCAGCAAATTAAGA+AGG | + | chr3_3:84607426-84607445 | None:intergenic | 40.0% | |
| TCACTACAACCTATATGACC+AGG | - | chr3_3:84607453-84607472 | Msa0479620:intron | 40.0% | |
| GATAGAACTAACATACCTGC+TGG | + | chr3_3:84607525-84607544 | None:intergenic | 40.0% | |
| AGAACAAGTGTGCACATGAA+AGG | + | chr3_3:84607710-84607729 | None:intergenic | 40.0% | |
| GAGATAACGACAGAACTGAA+AGG | + | chr3_3:84607743-84607762 | None:intergenic | 40.0% | |
| TGTCGTTATCTCTTCTACCT+CGG | - | chr3_3:84607751-84607770 | Msa0479620:intron | 40.0% | |
| TCTTCTACCTCGGGAAAATT+CGG | - | chr3_3:84607761-84607780 | Msa0479620:intron | 40.0% | |
| CGAACTGTCTTTATGCAGAA+AGG | - | chr3_3:84607925-84607944 | Msa0479620:CDS | 40.0% | |
| AAGTGGTTAAATGCACCCTA+AGG | + | chr3_3:84608134-84608153 | None:intergenic | 40.0% | |
| AAGTGGTTAAATGCACCTCA+AGG | - | chr3_3:84608283-84608302 | Msa0479620:CDS | 40.0% | |
| CGTACACCCACTTATTGTTT+AGG | + | chr3_3:84608349-84608368 | None:intergenic | 40.0% | |
| TCTTGTCCAACTAACGTGTT+GGG | + | chr3_3:84608430-84608449 | None:intergenic | 40.0% | |
| ATCTTGTCCAACTAACGTGT+TGG | + | chr3_3:84608431-84608450 | None:intergenic | 40.0% | |
| TTGGAGGAAGATGAAACAAC+GGG | + | chr3_3:84608546-84608565 | None:intergenic | 40.0% | |
| GTTGGAGGAAGATGAAACAA+CGG | + | chr3_3:84608547-84608566 | None:intergenic | 40.0% | |
| GAAAGATGACAATGTGAAGG+AGG | + | chr3_3:84608573-84608592 | None:intergenic | 40.0% | |
| CTTCAACAATTGAGCTAGGA+AGG | + | chr3_3:84608601-84608620 | None:intergenic | 40.0% | |
| !!! | GGAAAAAGGCGCTTTTTTCT+GGG | + | chr3_3:84608932-84608951 | None:intergenic | 40.0% |
| !!! | TTCCCTTCCATTTTTTCCAC+TGG | - | chr3_3:84608948-84608967 | Msa0479620:CDS | 40.0% |
| !!! | TCCCTTCCATTTTTTCCACT+GGG | - | chr3_3:84608949-84608968 | Msa0479620:CDS | 40.0% |
| TCCCAGTGGAAAAAATGGAA+GGG | + | chr3_3:84608953-84608972 | None:intergenic | 40.0% | |
| TTCCCAGTGGAAAAAATGGA+AGG | + | chr3_3:84608954-84608973 | None:intergenic | 40.0% | |
| CGATTTCCCAGTGGAAAAAA+TGG | + | chr3_3:84608958-84608977 | None:intergenic | 40.0% | |
| CTAGTTTAACGATTTCCCAG+TGG | + | chr3_3:84608967-84608986 | None:intergenic | 40.0% | |
| ! | TTGGTCCATGTAAAAGGTGT+TGG | - | chr3_3:84609078-84609097 | Msa0479620:intron | 40.0% |
| !! | TGGTCCATGTAAAAGGTGTT+GGG | - | chr3_3:84609079-84609098 | Msa0479620:intron | 40.0% |
| ! | AGTACCCAACACCTTTTACA+TGG | + | chr3_3:84609086-84609105 | None:intergenic | 40.0% |
| AGGCCATAGTTTATCTGAGA+AGG | - | chr3_3:84609132-84609151 | Msa0479620:intron | 40.0% | |
| AGCTTATGTTGTGGAATTCC+AGG | - | chr3_3:84609446-84609465 | Msa0479620:intron | 40.0% | |
| ! | TTGGAGATTTGGAGCTGTTT+AGG | - | chr3_3:84609478-84609497 | Msa0479620:intron | 40.0% |
| CAGTCCTGATGACATTATGT+CGG | + | chr3_3:84609569-84609588 | None:intergenic | 40.0% | |
| GCTACATTGGATCATGCAAA+TGG | - | chr3_3:84609726-84609745 | Msa0479620:intron | 40.0% | |
| ATCCTCCTCTGCAATATGTT+TGG | + | chr3_3:84609946-84609965 | None:intergenic | 40.0% | |
| TTCACCCTACTAGTTGCAAT+CGG | - | chr3_3:84609995-84610014 | Msa0479620:CDS | 40.0% | |
| CTGAGATTTCCATATGGTGA+AGG | + | chr3_3:84610132-84610151 | None:intergenic | 40.0% | |
| TGACCACGTTGCTTCTTGTT+TGG | - | chr3_3:84605416-84605435 | Msa0479620:three_prime_UTR | 45.0% | |
| AGACCAAACAAGAAGCAACG+TGG | + | chr3_3:84605422-84605441 | None:intergenic | 45.0% | |
| TGTGGAGAAACGGAATTCGA+AGG | + | chr3_3:84605553-84605572 | None:intergenic | 45.0% | |
| ATAGCGTCCGTTATTGAGAC+CGG | - | chr3_3:84605688-84605707 | Msa0479620:three_prime_UTR | 45.0% | |
| TTAGCATGAGGTTCAGAACC+AGG | + | chr3_3:84605826-84605845 | None:intergenic | 45.0% | |
| ATTGTCTGCGTATCTTCCCA+AGG | - | chr3_3:84605846-84605865 | Msa0479620:CDS | 45.0% | |
| CCACAAGTGTTTATGCCAGT+AGG | + | chr3_3:84606052-84606071 | None:intergenic | 45.0% | |
| CCTACTGGCATAAACACTTG+TGG | - | chr3_3:84606049-84606068 | Msa0479620:CDS | 45.0% | |
| GTCTCGCAAGTGTTTATGTC+AGG | + | chr3_3:84606370-84606389 | None:intergenic | 45.0% | |
| AGTGTTTAGCTGTAGGGGTA+GGG | + | chr3_3:84606855-84606874 | None:intergenic | 45.0% | |
| AAGTGTTTAGCTGTAGGGGT+AGG | + | chr3_3:84606856-84606875 | None:intergenic | 45.0% | |
| GGCAACAAGTGTTTAGCTGT+AGG | + | chr3_3:84606862-84606881 | None:intergenic | 45.0% | |
| ! | GTTCTTCAGCTAGTGTTGCT+TGG | - | chr3_3:84607047-84607066 | Msa0479620:intron | 45.0% |
| CCAGATCTCCAGTAAGTTCA+TGG | + | chr3_3:84607141-84607160 | None:intergenic | 45.0% | |
| CCATGAACTTACTGGAGATC+TGG | - | chr3_3:84607138-84607157 | Msa0479620:intron | 45.0% | |
| CTGGAGATCTGGCTGAAATT+CGG | - | chr3_3:84607149-84607168 | Msa0479620:intron | 45.0% | |
| TGGAGATCTGGCTGAAATTC+GGG | - | chr3_3:84607150-84607169 | Msa0479620:intron | 45.0% | |
| CAATCCGATGCAATGCAAGT+AGG | + | chr3_3:84607292-84607311 | None:intergenic | 45.0% | |
| ACTCTTCGCCATGATGAGTT+GGG | - | chr3_3:84607314-84607333 | Msa0479620:intron | 45.0% | |
| AAACCTGACCCAACTCATCA+TGG | + | chr3_3:84607325-84607344 | None:intergenic | 45.0% | |
| ACTTCTCTGCCTGGTCATAT+AGG | + | chr3_3:84607465-84607484 | None:intergenic | 45.0% | |
| TGAAGCACATTCAAACCAGC+AGG | - | chr3_3:84607507-84607526 | Msa0479620:intron | 45.0% | |
| GTCGTTATCTCTTCTACCTC+GGG | - | chr3_3:84607752-84607771 | Msa0479620:intron | 45.0% | |
| ! | GAATAGTCCGAATTTTCCCG+AGG | + | chr3_3:84607771-84607790 | None:intergenic | 45.0% |
| TGCATAAAGACAGTTCGCTC+AGG | + | chr3_3:84607922-84607941 | None:intergenic | 45.0% | |
| GTGTAGTGGTTAAGGGAGAT+AGG | + | chr3_3:84608076-84608095 | None:intergenic | 45.0% | |
| CTAGTCGGTGTAGTGGTTAA+GGG | + | chr3_3:84608083-84608102 | None:intergenic | 45.0% | |
| ACTAGTCGGTGTAGTGGTTA+AGG | + | chr3_3:84608084-84608103 | None:intergenic | 45.0% | |
| TGGGTGTACGTTAGCAAATC+CGG | - | chr3_3:84608359-84608378 | Msa0479620:intron | 45.0% | |
| TTAGCACCCAACACGTTAGT+TGG | - | chr3_3:84608421-84608440 | Msa0479620:intron | 45.0% | |
| ACAATGTGAAGGAGGATGGT+TGG | + | chr3_3:84608565-84608584 | None:intergenic | 45.0% | |
| GATGACAATGTGAAGGAGGA+TGG | + | chr3_3:84608569-84608588 | None:intergenic | 45.0% | |
| AAATGGCACACCACAACACA+TGG | - | chr3_3:84608681-84608700 | Msa0479620:CDS | 45.0% | |
| ATCTCGGTCTATCTACAGAC+TGG | + | chr3_3:84608729-84608748 | None:intergenic | 45.0% | |
| !!! | GGGAAAAAGGCGCTTTTTTC+TGG | + | chr3_3:84608933-84608952 | None:intergenic | 45.0% |
| AAAGGTTGACCACTAGGCTA+TGG | + | chr3_3:84609231-84609250 | None:intergenic | 45.0% | |
| TGCAAGAAAGGTTGACCACT+AGG | + | chr3_3:84609237-84609256 | None:intergenic | 45.0% | |
| GGGCCTAAATTGTGCAAGAA+AGG | + | chr3_3:84609249-84609268 | None:intergenic | 45.0% | |
| CACAGGTGGTAACTAACTCA+GGG | + | chr3_3:84609269-84609288 | None:intergenic | 45.0% | |
| ACAGCTCCAAATCTCCAATG+CGG | + | chr3_3:84609476-84609495 | None:intergenic | 45.0% | |
| GTCTCCGACATAATGTCATC+AGG | - | chr3_3:84609562-84609581 | Msa0479620:intron | 45.0% | |
| CGACATAATGTCATCAGGAC+TGG | - | chr3_3:84609567-84609586 | Msa0479620:intron | 45.0% | |
| AGCTAGTGAGATGCGAGAAT+AGG | + | chr3_3:84609613-84609632 | None:intergenic | 45.0% | |
| TCAGCATCAGCAACAGGATT+TGG | + | chr3_3:84609666-84609685 | None:intergenic | 45.0% | |
| TGTCGAAGGCTATTCGTGAT+GGG | - | chr3_3:84609694-84609713 | Msa0479620:intron | 45.0% | |
| TGGGGCAATTGATGCTACAT+TGG | - | chr3_3:84609713-84609732 | Msa0479620:intron | 45.0% | |
| CATTGGATCATGCAAATGGG+TGG | - | chr3_3:84609730-84609749 | Msa0479620:intron | 45.0% | |
| AAATGGGTGGATGGTGTCTA+AGG | - | chr3_3:84609743-84609762 | Msa0479620:intron | 45.0% | |
| TGGATGGTGTCTAAGGAAAC+AGG | - | chr3_3:84609750-84609769 | Msa0479620:intron | 45.0% | |
| ACTGGCCAAACATATTGCAG+AGG | - | chr3_3:84609938-84609957 | Msa0479620:CDS | 45.0% | |
| TCACCCTACTAGTTGCAATC+GGG | - | chr3_3:84609996-84610015 | Msa0479620:CDS | 45.0% | |
| GATCCCGATTGCAACTAGTA+GGG | + | chr3_3:84610002-84610021 | None:intergenic | 45.0% | |
| AGATCCCGATTGCAACTAGT+AGG | + | chr3_3:84610003-84610022 | None:intergenic | 45.0% | |
| GGTCATTCAGAGTAACACCT+TGG | + | chr3_3:84610281-84610300 | None:intergenic | 45.0% | |
| !! | CCAAGCAATGCTGATTCAAC+AGG | + | chr3_3:84610302-84610321 | None:intergenic | 45.0% |
| CCTGTTGAATCAGCATTGCT+TGG | - | chr3_3:84610299-84610318 | Msa0479620:five_prime_UTR | 45.0% | |
| !!! | TTAAATTTTTTATACAAATT+AGG | - | chr3_3:84606152-84606171 | Msa0479620:CDS | 5.0% |
| !!! | ATTTTTAATAAAGAAAAATT+GGG | + | chr3_3:84608455-84608474 | None:intergenic | 5.0% |
| ! | TGAGACCGGTTCTTACTCGA+AGG | - | chr3_3:84605702-84605721 | Msa0479620:three_prime_UTR | 50.0% |
| CTCGATCATGTTCTCACTCC+TGG | - | chr3_3:84605805-84605824 | Msa0479620:exon | 50.0% | |
| GGAGGATGATCATGAGATGG+AGG | - | chr3_3:84606801-84606820 | Msa0479620:intron | 50.0% | |
| GGATGATCATGAGATGGAGG+TGG | - | chr3_3:84606804-84606823 | Msa0479620:intron | 50.0% | |
| TGTAGGGGTAGGGGTTTGAA+TGG | + | chr3_3:84606845-84606864 | None:intergenic | 50.0% | |
| GTGTTTAGCTGTAGGGGTAG+GGG | + | chr3_3:84606854-84606873 | None:intergenic | 50.0% | |
| GGAGATCTGGCTGAAATTCG+GGG | - | chr3_3:84607151-84607170 | Msa0479620:intron | 50.0% | |
| GAGATCTGGCTGAAATTCGG+GGG | - | chr3_3:84607152-84607171 | Msa0479620:intron | 50.0% | |
| CAACTCATCATGGCGAAGAG+TGG | + | chr3_3:84607315-84607334 | None:intergenic | 50.0% | |
| CACTCTTCGCCATGATGAGT+TGG | - | chr3_3:84607313-84607332 | Msa0479620:intron | 50.0% | |
| ATGACCAGGCAGAGAAGTTG+AGG | - | chr3_3:84607467-84607486 | Msa0479620:intron | 50.0% | |
| TTGACCTCAACTTCTCTGCC+TGG | + | chr3_3:84607474-84607493 | None:intergenic | 50.0% | |
| GGCAGAGAAGTTGAGGTCAA+AGG | - | chr3_3:84607474-84607493 | Msa0479620:intron | 50.0% | |
| TATTCCAGTGCTCACAGCTG+TGG | - | chr3_3:84607586-84607605 | Msa0479620:intron | 50.0% | |
| GTAAAGCTCCAGTTGCAGCT+CGG | - | chr3_3:84607836-84607855 | Msa0479620:CDS | 50.0% | |
| TAAAGCTCCAGTTGCAGCTC+GGG | - | chr3_3:84607837-84607856 | Msa0479620:CDS | 50.0% | |
| AAGTGGTTGCATACGCCTTG+AGG | + | chr3_3:84608301-84608320 | None:intergenic | 50.0% | |
| GGGTGTACGTTAGCAAATCC+GGG | - | chr3_3:84608360-84608379 | Msa0479620:intron | 50.0% | |
| GGGTGTGCAATAGCATTACC+CGG | + | chr3_3:84608381-84608400 | None:intergenic | 50.0% | |
| ATGTGAAGGAGGATGGTTGG+AGG | + | chr3_3:84608562-84608581 | None:intergenic | 50.0% | |
| ATCTCAAGGCCATAGCCTAG+TGG | - | chr3_3:84609219-84609238 | Msa0479620:intron | 50.0% | |
| GCACAGGTGGTAACTAACTC+AGG | + | chr3_3:84609270-84609289 | None:intergenic | 50.0% | |
| ATGAGTTCCGTCTGCACTGA+AGG | + | chr3_3:84609529-84609548 | None:intergenic | 50.0% | |
| ATGCTCTCAGCATCAGCAAC+AGG | + | chr3_3:84609672-84609691 | None:intergenic | 50.0% | |
| !! | TGCTGAGAGCATTGTGTCGA+AGG | - | chr3_3:84609680-84609699 | Msa0479620:intron | 50.0% |
| GTGTCGAAGGCTATTCGTGA+TGG | - | chr3_3:84609693-84609712 | Msa0479620:intron | 50.0% | |
| GTCGAAGGCTATTCGTGATG+GGG | - | chr3_3:84609695-84609714 | Msa0479620:intron | 50.0% | |
| GGATCATGCAAATGGGTGGA+TGG | - | chr3_3:84609734-84609753 | Msa0479620:intron | 50.0% | |
| CGAGAATTGAAAGCCAGCTG+AGG | + | chr3_3:84609798-84609817 | None:intergenic | 50.0% | |
| AGAGAGACAACAGCAAGAGC+AGG | - | chr3_3:84609914-84609933 | Msa0479620:intron | 50.0% | |
| ACAACAGCAAGAGCAGGAAC+TGG | - | chr3_3:84609920-84609939 | Msa0479620:intron | 50.0% | |
| GGCCAAACATATTGCAGAGG+AGG | - | chr3_3:84609941-84609960 | Msa0479620:CDS | 50.0% | |
| ! | TCGCCATGATGAGTTGGGTC+AGG | - | chr3_3:84607319-84607338 | Msa0479620:intron | 55.0% |
| ATCACCACAGCTGTGAGCAC+TGG | + | chr3_3:84607593-84607612 | None:intergenic | 55.0% | |
| GAGCTTTACGAGCAGCTTGC+AGG | + | chr3_3:84607825-84607844 | None:intergenic | 55.0% | |
| AAAGCTCCAGTTGCAGCTCG+GGG | - | chr3_3:84607838-84607857 | Msa0479620:CDS | 55.0% | |
| GAATTCCAGGCTGTCCGCAT+TGG | - | chr3_3:84609459-84609478 | Msa0479620:intron | 55.0% | |
| AATCTCCAATGCGGACAGCC+TGG | + | chr3_3:84609467-84609486 | None:intergenic | 55.0% | |
| GGCTGTCCGCATTGGAGATT+TGG | - | chr3_3:84609467-84609486 | Msa0479620:intron | 55.0% | |
| GCAACCACCTTCAGTGCAGA+CGG | - | chr3_3:84609519-84609538 | Msa0479620:intron | 55.0% | |
| AGTTCCGTCTGCACTGAAGG+TGG | + | chr3_3:84609526-84609545 | None:intergenic | 55.0% | |
| GACAGAATGTGTCGCCCAGA+TGG | - | chr3_3:84610358-84610377 | Msa0479620:five_prime_UTR | 55.0% | |
| CGAAAACCCCGAGCTGCAAC+TGG | + | chr3_3:84607847-84607866 | None:intergenic | 60.0% | |
| CTCCACGCATGAGCCTCAGC+TGG | - | chr3_3:84609782-84609801 | Msa0479620:intron | 65.0% | |
| AGCCAGCTGAGGCTCATGCG+TGG | + | chr3_3:84609787-84609806 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 84605383 | 84610408 | 84605383 | ID=Msa0479620;Name=Msa0479620 |
| chr3_3 | mRNA | 84605383 | 84610408 | 84605383 | ID=Msa0479620-mRNA-1;Parent=Msa0479620;Name=Msa0479620-mRNA-1;_AED=0.03;_eAED=0.03;_QI=131|1|1|1|1|1|8|428|490 |
| chr3_3 | exon | 84605383 | 84606323 | 84605383 | ID=Msa0479620-mRNA-1:exon:24081;Parent=Msa0479620-mRNA-1 |
| chr3_3 | exon | 84607804 | 84608043 | 84607804 | ID=Msa0479620-mRNA-1:exon:24080;Parent=Msa0479620-mRNA-1 |
| chr3_3 | exon | 84608263 | 84608373 | 84608263 | ID=Msa0479620-mRNA-1:exon:24079;Parent=Msa0479620-mRNA-1 |
| chr3_3 | exon | 84608451 | 84608505 | 84608451 | ID=Msa0479620-mRNA-1:exon:24078;Parent=Msa0479620-mRNA-1 |
| chr3_3 | exon | 84608618 | 84608754 | 84608618 | ID=Msa0479620-mRNA-1:exon:24077;Parent=Msa0479620-mRNA-1 |
| chr3_3 | exon | 84608843 | 84608989 | 84608843 | ID=Msa0479620-mRNA-1:exon:24076;Parent=Msa0479620-mRNA-1 |
| chr3_3 | exon | 84609924 | 84610114 | 84609924 | ID=Msa0479620-mRNA-1:exon:24075;Parent=Msa0479620-mRNA-1 |
| chr3_3 | exon | 84610199 | 84610408 | 84610199 | ID=Msa0479620-mRNA-1:exon:24074;Parent=Msa0479620-mRNA-1 |
| chr3_3 | five_prime_UTR | 84610278 | 84610408 | 84610278 | ID=Msa0479620-mRNA-1:five_prime_utr;Parent=Msa0479620-mRNA-1 |
| chr3_3 | CDS | 84610199 | 84610277 | 84610199 | ID=Msa0479620-mRNA-1:cds;Parent=Msa0479620-mRNA-1 |
| chr3_3 | CDS | 84609924 | 84610114 | 84609924 | ID=Msa0479620-mRNA-1:cds;Parent=Msa0479620-mRNA-1 |
| chr3_3 | CDS | 84608843 | 84608989 | 84608843 | ID=Msa0479620-mRNA-1:cds;Parent=Msa0479620-mRNA-1 |
| chr3_3 | CDS | 84608618 | 84608754 | 84608618 | ID=Msa0479620-mRNA-1:cds;Parent=Msa0479620-mRNA-1 |
| chr3_3 | CDS | 84608451 | 84608505 | 84608451 | ID=Msa0479620-mRNA-1:cds;Parent=Msa0479620-mRNA-1 |
| chr3_3 | CDS | 84608263 | 84608373 | 84608263 | ID=Msa0479620-mRNA-1:cds;Parent=Msa0479620-mRNA-1 |
| chr3_3 | CDS | 84607804 | 84608043 | 84607804 | ID=Msa0479620-mRNA-1:cds;Parent=Msa0479620-mRNA-1 |
| chr3_3 | CDS | 84605811 | 84606323 | 84605811 | ID=Msa0479620-mRNA-1:cds;Parent=Msa0479620-mRNA-1 |
| chr3_3 | three_prime_UTR | 84605383 | 84605810 | 84605383 | ID=Msa0479620-mRNA-1:three_prime_utr;Parent=Msa0479620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
