Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523950 | ACJ85376.1 | 97.321 | 224 | 4 | 1 | 1 | 222 | 1 | 224 | 6.35e-155 | 438 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523950 | sp|Q9GZT6|CC90B_HUMAN | 27.919 | 197 | 124 | 2 | 42 | 220 | 56 | 252 | 4.21e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523950 | B7FKU2 | 97.321 | 224 | 4 | 1 | 1 | 222 | 1 | 224 | 3.03e-155 | 438 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0387010 | Msa0523950 | 0.930474 | 1.553613e-93 | -8.615850e-47 |
| Msa0523950 | Msa1415370 | 0.875879 | 2.174804e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523950 | MtrunA17_Chr3g0145131 | 96.460 | 226 | 4 | 1 | 1 | 222 | 1 | 226 | 7.32e-159 | 438 |
| Msa0523950 | MtrunA17_Chr8g0372241 | 74.877 | 203 | 49 | 1 | 22 | 222 | 39 | 241 | 9.93e-109 | 312 |
| Msa0523950 | MtrunA17_Chr5g0405011 | 69.907 | 216 | 57 | 2 | 7 | 222 | 26 | 233 | 1.26e-105 | 304 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523950 | AT2G16460.1 | 72.174 | 230 | 56 | 2 | 1 | 222 | 1 | 230 | 5.39e-114 | 325 |
| Msa0523950 | AT3G51090.1 | 73.958 | 192 | 50 | 0 | 31 | 222 | 107 | 298 | 8.42e-101 | 294 |
| Msa0523950 | AT3G51090.2 | 71.242 | 153 | 44 | 0 | 31 | 183 | 107 | 259 | 2.42e-72 | 221 |
| Msa0523950 | AT2G16460.2 | 66.071 | 168 | 49 | 1 | 1 | 160 | 1 | 168 | 7.32e-71 | 214 |
| Msa0523950 | AT2G35090.1 | 27.841 | 176 | 81 | 4 | 47 | 222 | 28 | 157 | 1.01e-13 | 67.0 |
| Msa0523950 | AT2G35070.2 | 27.711 | 166 | 74 | 3 | 47 | 212 | 28 | 147 | 3.17e-12 | 62.8 |
| Msa0523950 | AT2G35070.1 | 27.711 | 166 | 74 | 3 | 47 | 212 | 28 | 147 | 3.17e-12 | 62.8 |
Find 65 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAACATCATTGTTATTAA+TGG | 0.113327 | 3_4:-77412629 | Msa0523950:three_prime_UTR |
| TTTACGGATTAGAAGATTAA+TGG | 0.209722 | 3_4:-77412659 | Msa0523950:three_prime_UTR |
| ATAGAGAGAATTATTATTTA+CGG | 0.252202 | 3_4:-77412675 | Msa0523950:three_prime_UTR |
| CATACTTTGCAGCTTCTAAC+TGG | 0.256276 | 3_4:+77413052 | None:intergenic |
| AGAAGGAAGAAAGCGGGTTT+TGG | 0.273207 | 3_4:-77416208 | None:intergenic |
| ATTGTTATTAATGGAATGTT+AGG | 0.274192 | 3_4:-77412620 | Msa0523950:three_prime_UTR |
| ATTTAATCACAGACGCATTC+AGG | 0.308541 | 3_4:-77413230 | Msa0523950:intron |
| GTTATCGCCTCCGCTTGTTT+TGG | 0.313642 | 3_4:+77415828 | None:intergenic |
| ATCAAGTTTGTTTGTCAGAT+TGG | 0.379537 | 3_4:+77413177 | None:intergenic |
| GGCGAGACCCACTGCAGATA+TGG | 0.381238 | 3_4:+77412996 | None:intergenic |
| AATTCTATCTACTTTCTGAT+TGG | 0.391161 | 3_4:+77412721 | None:intergenic |
| CTCTATCTCTCTGGATTAGA+TGG | 0.405673 | 3_4:-77416137 | Msa0523950:exon |
| AACAAGCGGAGGCGATAACT+TGG | 0.423397 | 3_4:-77415824 | Msa0523950:CDS |
| ATTGATTGCATTTGGTTGTT+GGG | 0.432442 | 3_4:-77412755 | Msa0523950:three_prime_UTR |
| ACAATTCACCTTTGATTACA+TGG | 0.433146 | 3_4:+77412948 | None:intergenic |
| ATGTTAAAATTGATTGCATT+TGG | 0.442337 | 3_4:-77412763 | Msa0523950:three_prime_UTR |
| AATTGATTGCATTTGGTTGT+TGG | 0.455614 | 3_4:-77412756 | Msa0523950:three_prime_UTR |
| TACGGAATTTAGAGACGAAC+GGG | 0.458143 | 3_4:-77415857 | Msa0523950:CDS |
| ATCTGAAGTCAAAACTTCTC+AGG | 0.465665 | 3_4:-77415688 | Msa0523950:intron |
| TAGCACCAGGCATGTTTCAC+AGG | 0.468804 | 3_4:-77416035 | Msa0523950:CDS |
| GCATCAGCTCTCTATCTCTC+TGG | 0.470218 | 3_4:-77416146 | Msa0523950:five_prime_UTR |
| AAGTTTGTTTGTCAGATTGG+TGG | 0.471335 | 3_4:+77413180 | None:intergenic |
| CACTGCAGATATGGAGATAA+GGG | 0.479719 | 3_4:+77413005 | None:intergenic |
| ATCAAAGGTGAATTGTGTTA+TGG | 0.485398 | 3_4:-77412941 | Msa0523950:three_prime_UTR |
| GAGATTGACAAAGTCACTGC+TGG | 0.485809 | 3_4:-77413388 | Msa0523950:CDS |
| CCACTGCAGATATGGAGATA+AGG | 0.487152 | 3_4:+77413004 | None:intergenic |
| TGGACTTGAATCTTGAAAGA+AGG | 0.491978 | 3_4:-77413357 | Msa0523950:intron |
| TCTGACAAACAAACTTGATC+GGG | 0.498087 | 3_4:-77413173 | Msa0523950:intron |
| TTAACATGTTAATGAGGGCC+GGG | 0.498734 | 3_4:+77412779 | None:intergenic |
| AGTCACTGCTGGGCAACGAT+TGG | 0.500665 | 3_4:-77413377 | Msa0523950:CDS |
| TTTAACATGTTAATGAGGGC+CGG | 0.510450 | 3_4:+77412778 | None:intergenic |
| CTTCTACTTCTACTAGCACC+AGG | 0.511035 | 3_4:-77416048 | Msa0523950:CDS |
| TGAAGTTCTTAATGACAGCT+TGG | 0.512695 | 3_4:-77415793 | Msa0523950:CDS |
| ATCTGACAAACAAACTTGAT+CGG | 0.523172 | 3_4:-77413174 | Msa0523950:CDS |
| CTATAATATGATGCGGATCA+CGG | 0.523976 | 3_4:+77412975 | None:intergenic |
| AACTTCATGTGTAGTATCCC+CGG | 0.524399 | 3_4:-77412797 | Msa0523950:three_prime_UTR |
| CAATTCACCTTTGATTACAT+GGG | 0.537855 | 3_4:+77412949 | None:intergenic |
| ATACTTTGCAGCTTCTAACT+GGG | 0.540140 | 3_4:+77413053 | None:intergenic |
| CCTTATCTCCATATCTGCAG+TGG | 0.542460 | 3_4:-77413004 | Msa0523950:CDS |
| TGCTAGTAGAAGTAGAAGAA+AGG | 0.547264 | 3_4:+77416053 | None:intergenic |
| AATGTTACAAATGAAACTGC+AGG | 0.549552 | 3_4:+77412848 | None:intergenic |
| TAAGAAAGAAGGAAGAAAGC+GGG | 0.554167 | 3_4:-77416214 | None:intergenic |
| GAGGAATGCGCGTTTAACGT+TGG | 0.554552 | 3_4:+77416003 | None:intergenic |
| AACTGCAGGTCTTGTACCAA+TGG | 0.554731 | 3_4:+77412862 | None:intergenic |
| TTTGGCATTTCGGAGATCAA+AGG | 0.558059 | 3_4:-77412899 | Msa0523950:three_prime_UTR |
| TAACATGTTAATGAGGGCCG+GGG | 0.567134 | 3_4:+77412780 | None:intergenic |
| GCGTTTAACGTTGGAATCGA+CGG | 0.571613 | 3_4:+77416012 | None:intergenic |
| CTTATCTCCATATCTGCAGT+GGG | 0.571660 | 3_4:-77413003 | Msa0523950:CDS |
| ATAAGATGAGGACTGAATTG+AGG | 0.579482 | 3_4:-77413530 | Msa0523950:intron |
| GACGGCCTGTGAAACATGCC+TGG | 0.591005 | 3_4:+77416030 | None:intergenic |
| GGATACTACACATGAAGTTG+AGG | 0.592966 | 3_4:+77412801 | None:intergenic |
| ATAGTCTCCCATGTAATCAA+AGG | 0.599325 | 3_4:-77412956 | Msa0523950:exon |
| GATACTACACATGAAGTTGA+GGG | 0.600892 | 3_4:+77412802 | None:intergenic |
| AGAAAGGAATAAAGAAGCGA+CGG | 0.605280 | 3_4:+77416069 | None:intergenic |
| GATGTGATCAAATACTGCAT+AGG | 0.606023 | 3_4:-77413030 | Msa0523950:CDS |
| ACAAGCGGAGGCGATAACTT+GGG | 0.608734 | 3_4:-77415823 | Msa0523950:CDS |
| GTACGGAATTTAGAGACGAA+CGG | 0.611233 | 3_4:-77415858 | Msa0523950:CDS |
| ATAAGAAAGAAGGAAGAAAG+CGG | 0.624424 | 3_4:-77416215 | None:intergenic |
| AGATTGACAAAGTCACTGCT+GGG | 0.625895 | 3_4:-77413387 | Msa0523950:CDS |
| GTAATGACATAGATAAGATG+AGG | 0.649950 | 3_4:-77413542 | Msa0523950:CDS |
| GCTTCCTCCAAAACAAGCGG+AGG | 0.660706 | 3_4:-77415835 | Msa0523950:CDS |
| CGGGCTTCCTCCAAAACAAG+CGG | 0.661061 | 3_4:-77415838 | Msa0523950:CDS |
| TGGGAGACTATAATATGATG+CGG | 0.668275 | 3_4:+77412968 | None:intergenic |
| CTTGTACCAATGGAAAACAA+TGG | 0.671646 | 3_4:+77412872 | None:intergenic |
| CGAGTGCAAGTGTATCGACG+AGG | 0.710387 | 3_4:+77415984 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTTATAATAAGAATAT+AGG | - | chr3_4:77413404-77413423 | Msa0523950:intron | 10.0% |
| !! | AATTGAATTGAATTGAATTT+GGG | - | chr3_4:77412908-77412927 | Msa0523950:three_prime_UTR | 15.0% |
| !!! | AATTTATTGGTCTTTTAAAA+GGG | + | chr3_4:77413358-77413377 | None:intergenic | 15.0% |
| !!! | AAATTTATTGGTCTTTTAAA+AGG | + | chr3_4:77413359-77413378 | None:intergenic | 15.0% |
| !!! | CAGTTATGTTATTTATTTAT+AGG | - | chr3_4:77414373-77414392 | Msa0523950:intron | 15.0% |
| !! | ATAGTTTATTGAAAGTTTAT+GGG | - | chr3_4:77414433-77414452 | Msa0523950:intron | 15.0% |
| !! | ATAAATAAAGATGCAATATT+TGG | - | chr3_4:77414959-77414978 | Msa0523950:intron | 15.0% |
| !!! | TATATATTTTGTTATTGAAG+TGG | - | chr3_4:77415670-77415689 | Msa0523950:intron | 15.0% |
| !!! | CTCAATTTACAATTTTTTTT+TGG | - | chr3_4:77415887-77415906 | Msa0523950:intron | 15.0% |
| !! | ATAGAGAGAATTATTATTTA+CGG | - | chr3_4:77416129-77416148 | Msa0523950:exon | 15.0% |
| !! | GAATTGAATTGAATTGAATT+TGG | - | chr3_4:77412902-77412921 | Msa0523950:three_prime_UTR | 20.0% |
| !!! | AATGTGCAAAATATCTTTTT+AGG | - | chr3_4:77413251-77413270 | Msa0523950:intron | 20.0% |
| !! | AAAATGCAAATTAAACTGAA+AGG | + | chr3_4:77413862-77413881 | None:intergenic | 20.0% |
| !! | AATTCCTAAATGACAATTAT+TGG | - | chr3_4:77413973-77413992 | Msa0523950:intron | 20.0% |
| !! | GATAGTTTATTGAAAGTTTA+TGG | - | chr3_4:77414432-77414451 | Msa0523950:intron | 20.0% |
| !! | AAGATATCTAATTCTTAGAA+GGG | - | chr3_4:77414467-77414486 | Msa0523950:intron | 20.0% |
| !! | TATTATATATGAGTAAACAC+TGG | + | chr3_4:77414620-77414639 | None:intergenic | 20.0% |
| !!! | TAGATGTATTTTACTAAAAG+AGG | - | chr3_4:77414769-77414788 | Msa0523950:intron | 20.0% |
| !! | TTAGATGCAATAAGAAATTA+GGG | - | chr3_4:77414798-77414817 | Msa0523950:intron | 20.0% |
| !!! | TGCATCTTTATTTATAAATC+CGG | + | chr3_4:77414954-77414973 | None:intergenic | 20.0% |
| !! | TACAATATAGTACAATCTTA+GGG | + | chr3_4:77415361-77415380 | None:intergenic | 20.0% |
| !! | ATACAATATAGTACAATCTT+AGG | + | chr3_4:77415362-77415381 | None:intergenic | 20.0% |
| !!! | AAACATGGTTATATTTTTTG+TGG | - | chr3_4:77415485-77415504 | Msa0523950:intron | 20.0% |
| !! | ATAAATGTGATGATAACTTA+GGG | + | chr3_4:77415544-77415563 | None:intergenic | 20.0% |
| !! | AATAAATGTGATGATAACTT+AGG | + | chr3_4:77415545-77415564 | None:intergenic | 20.0% |
| !!! | ACAATTTTTTTTTGGCATTT+CGG | - | chr3_4:77415895-77415914 | Msa0523950:intron | 20.0% |
| !!! | AGTTTCATTTGTAACATTTT+TGG | - | chr3_4:77415961-77415980 | Msa0523950:intron | 20.0% |
| !!! | GTTTCATTTGTAACATTTTT+GGG | - | chr3_4:77415962-77415981 | Msa0523950:intron | 20.0% |
| !!! | CAATTTTAACATGTTAATGA+GGG | + | chr3_4:77416033-77416052 | None:intergenic | 20.0% |
| !!! | TCAATTTTAACATGTTAATG+AGG | + | chr3_4:77416034-77416053 | None:intergenic | 20.0% |
| !! | ATGTTAAAATTGATTGCATT+TGG | - | chr3_4:77416041-77416060 | Msa0523950:CDS | 20.0% |
| !!! | TGAAACATCATTGTTATTAA+TGG | - | chr3_4:77416175-77416194 | Msa0523950:five_prime_UTR | 20.0% |
| !!! | ATTGTTATTAATGGAATGTT+AGG | - | chr3_4:77416184-77416203 | Msa0523950:five_prime_UTR | 20.0% |
| ! | AAACCAAATTTCCATACAAT+TGG | - | chr3_4:77413140-77413159 | Msa0523950:intron | 25.0% |
| ! | AACCAAATTTCCATACAATT+GGG | - | chr3_4:77413141-77413160 | Msa0523950:intron | 25.0% |
| ! | AAAAATGCAACAAATGCTTA+TGG | + | chr3_4:77413210-77413229 | None:intergenic | 25.0% |
| !!! | GCAAAATATCTTTTTAGGTT+AGG | - | chr3_4:77413256-77413275 | Msa0523950:intron | 25.0% |
| ! | TAAAGATAAGTCCTAAAACA+TGG | - | chr3_4:77413292-77413311 | Msa0523950:intron | 25.0% |
| !!! | CAATTTTTTCACCATGTTTT+AGG | + | chr3_4:77413306-77413325 | None:intergenic | 25.0% |
| ! | TATAAAATCTCTGAATGTTC+AGG | + | chr3_4:77413394-77413413 | None:intergenic | 25.0% |
| !!! | GAGTGATGATGATATATTTT+TGG | - | chr3_4:77413426-77413445 | Msa0523950:intron | 25.0% |
| ! | TATTGTATCTATCAAACAGA+AGG | - | chr3_4:77413459-77413478 | Msa0523950:intron | 25.0% |
| ! | ATAAGACGTTGAAAAAGAAA+TGG | - | chr3_4:77413601-77413620 | Msa0523950:intron | 25.0% |
| ! | TAAGACGTTGAAAAAGAAAT+GGG | - | chr3_4:77413602-77413621 | Msa0523950:intron | 25.0% |
| !! | TTTTAACAAACCATGCATTA+TGG | + | chr3_4:77413656-77413675 | None:intergenic | 25.0% |
| ! | CTGACTAAACTATATAGTAA+TGG | - | chr3_4:77413776-77413795 | Msa0523950:intron | 25.0% |
| !! | ACTTCCAATAATTGTCATTT+AGG | + | chr3_4:77413980-77413999 | None:intergenic | 25.0% |
| ! | TATGTATACATGTAGATGAT+TGG | - | chr3_4:77414243-77414262 | Msa0523950:intron | 25.0% |
| ! | TTGCATGATTCTAATTATGT+AGG | - | chr3_4:77414300-77414319 | Msa0523950:intron | 25.0% |
| ! | ATGATTCTAATTATGTAGGA+AGG | - | chr3_4:77414304-77414323 | Msa0523950:intron | 25.0% |
| ! | GAATGAATAGAGAAAAGAAA+GGG | - | chr3_4:77414395-77414414 | Msa0523950:intron | 25.0% |
| ! | AATGAATAGAGAAAAGAAAG+GGG | - | chr3_4:77414396-77414415 | Msa0523950:intron | 25.0% |
| !! | CTTCTAAGAATTAGATATCT+TGG | + | chr3_4:77414468-77414487 | None:intergenic | 25.0% |
| ! | CAAGATATCTAATTCTTAGA+AGG | - | chr3_4:77414466-77414485 | Msa0523950:intron | 25.0% |
| ! | ACACAAATTGAAATAGGAAT+AGG | + | chr3_4:77414542-77414561 | None:intergenic | 25.0% |
| ! | ATATAGATACCAGTTTCTAT+CGG | - | chr3_4:77414668-77414687 | Msa0523950:intron | 25.0% |
| ! | TGTAACTTTATTCCTAAACA+AGG | - | chr3_4:77414737-77414756 | Msa0523950:intron | 25.0% |
| !!! | CTAAATTTAATGCCTTGTTT+AGG | + | chr3_4:77414752-77414771 | None:intergenic | 25.0% |
| ! | CTTAGATGCAATAAGAAATT+AGG | - | chr3_4:77414797-77414816 | Msa0523950:intron | 25.0% |
| ! | TAGATGCAATAAGAAATTAG+GGG | - | chr3_4:77414799-77414818 | Msa0523950:intron | 25.0% |
| !! | ATCTTTATTTATAAATCCGG+GGG | + | chr3_4:77414951-77414970 | None:intergenic | 25.0% |
| !! | CATCTTTATTTATAAATCCG+GGG | + | chr3_4:77414952-77414971 | None:intergenic | 25.0% |
| !! | GCATCTTTATTTATAAATCC+GGG | + | chr3_4:77414953-77414972 | None:intergenic | 25.0% |
| !!! | TTTGAAGTCTTTTGTGTATT+CGG | - | chr3_4:77415005-77415024 | Msa0523950:intron | 25.0% |
| ! | TATTTGAGTATAAACTTCCA+AGG | + | chr3_4:77415306-77415325 | None:intergenic | 25.0% |
| ! | TAATTGAAAAACTGCAAACA+TGG | - | chr3_4:77415470-77415489 | Msa0523950:intron | 25.0% |
| !!! | TTGAAGTCTATATTGCTTTT+AGG | - | chr3_4:77415710-77415729 | Msa0523950:CDS | 25.0% |
| ! | AATTCTATCTACTTTCTGAT+TGG | + | chr3_4:77416086-77416105 | None:intergenic | 25.0% |
| !!! | TTTACGGATTAGAAGATTAA+TGG | - | chr3_4:77416145-77416164 | Msa0523950:five_prime_UTR | 25.0% |
| !!! | TACAAACGTGCTTTTGATTT+GGG | - | chr3_4:77412695-77412714 | Msa0523950:three_prime_UTR | 30.0% |
| ! | CATCTCAGATTTTTGCATAT+CGG | + | chr3_4:77413067-77413086 | None:intergenic | 30.0% |
| AAAATTGATCACACTCTTTC+TGG | - | chr3_4:77413319-77413338 | Msa0523950:intron | 30.0% | |
| CTATATGACATCTCAAAACT+CGG | + | chr3_4:77413506-77413525 | None:intergenic | 30.0% | |
| AAGAACTTAGTAAACTGCAA+AGG | - | chr3_4:77413675-77413694 | Msa0523950:intron | 30.0% | |
| ATTGCTGCATTATATATGCA+TGG | - | chr3_4:77413707-77413726 | Msa0523950:intron | 30.0% | |
| !!! | CTCTCTTTCACTTCTTTTTT+CGG | - | chr3_4:77413732-77413751 | Msa0523950:intron | 30.0% |
| !!! | TCTCTTTCACTTCTTTTTTC+GGG | - | chr3_4:77413733-77413752 | Msa0523950:intron | 30.0% |
| TGACAATTATTGGAAGTTCA+TGG | - | chr3_4:77413983-77414002 | Msa0523950:intron | 30.0% | |
| TATGATGTTGATACAAACTC+TGG | - | chr3_4:77414184-77414203 | Msa0523950:intron | 30.0% | |
| ! | TTTCATTTTGTTCTTGGCAT+GGG | - | chr3_4:77414208-77414227 | Msa0523950:intron | 30.0% |
| GGAATGAATAGAGAAAAGAA+AGG | - | chr3_4:77414394-77414413 | Msa0523950:intron | 30.0% | |
| ATGAATAGAGAAAAGAAAGG+GGG | - | chr3_4:77414397-77414416 | Msa0523950:intron | 30.0% | |
| ACTGAGACACAAATTGAAAT+AGG | + | chr3_4:77414548-77414567 | None:intergenic | 30.0% | |
| AACAGATAAAGCGTGTAATA+GGG | + | chr3_4:77414702-77414721 | None:intergenic | 30.0% | |
| TTAGGAATAAAGTTACAGTG+AGG | + | chr3_4:77414734-77414753 | None:intergenic | 30.0% | |
| ! | AAGATGCAATATTTGGAGTT+TGG | - | chr3_4:77414966-77414985 | Msa0523950:intron | 30.0% |
| ! | CAATATTTGGAGTTTGGATT+TGG | - | chr3_4:77414972-77414991 | Msa0523950:intron | 30.0% |
| ! | GATAGCTAGGCATATTTTAT+AGG | - | chr3_4:77415066-77415085 | Msa0523950:intron | 30.0% |
| ATAACATAGAAAAAACCCAC+AGG | + | chr3_4:77415107-77415126 | None:intergenic | 30.0% | |
| !! | TGTTATACTTTTGAGAACAC+AGG | - | chr3_4:77415121-77415140 | Msa0523950:intron | 30.0% |
| GTAATGACATAGATAAGATG+AGG | - | chr3_4:77415262-77415281 | Msa0523950:intron | 30.0% | |
| ! | AAAATCAAATTTGCTTCAGG+TGG | + | chr3_4:77415334-77415353 | None:intergenic | 30.0% |
| ! | GTGAAAATCAAATTTGCTTC+AGG | + | chr3_4:77415337-77415356 | None:intergenic | 30.0% |
| ! | ATTTATTGATTGTCTGTGAC+AGG | - | chr3_4:77415390-77415409 | Msa0523950:intron | 30.0% |
| ! | ATCAAGTTTGTTTGTCAGAT+TGG | + | chr3_4:77415630-77415649 | None:intergenic | 30.0% |
| ATCTGACAAACAAACTTGAT+CGG | - | chr3_4:77415630-77415649 | Msa0523950:intron | 30.0% | |
| CAATTCACCTTTGATTACAT+GGG | + | chr3_4:77415858-77415877 | None:intergenic | 30.0% | |
| ACAATTCACCTTTGATTACA+TGG | + | chr3_4:77415859-77415878 | None:intergenic | 30.0% | |
| ATCAAAGGTGAATTGTGTTA+TGG | - | chr3_4:77415863-77415882 | Msa0523950:intron | 30.0% | |
| AATGTTACAAATGAAACTGC+AGG | + | chr3_4:77415959-77415978 | None:intergenic | 30.0% | |
| AATTGATTGCATTTGGTTGT+TGG | - | chr3_4:77416048-77416067 | Msa0523950:CDS | 30.0% | |
| ATTGATTGCATTTGGTTGTT+GGG | - | chr3_4:77416049-77416068 | Msa0523950:CDS | 30.0% | |
| !! | GTACAAACGTGCTTTTGATT+TGG | - | chr3_4:77412694-77412713 | Msa0523950:three_prime_UTR | 35.0% |
| AGAAAGGAATAAAGAAGCGA+CGG | + | chr3_4:77412738-77412757 | None:intergenic | 35.0% | |
| TGCTAGTAGAAGTAGAAGAA+AGG | + | chr3_4:77412754-77412773 | None:intergenic | 35.0% | |
| TGAAGTTCTTAATGACAGCT+TGG | - | chr3_4:77413011-77413030 | Msa0523950:CDS | 35.0% | |
| ! | ATCTGAAGTCAAAACTTCTC+AGG | - | chr3_4:77413116-77413135 | Msa0523950:intron | 35.0% |
| GACCCAATTGTATGGAAATT+TGG | + | chr3_4:77413146-77413165 | None:intergenic | 35.0% | |
| TCAAACAGAAGGTTTAGCAT+CGG | - | chr3_4:77413470-77413489 | Msa0523950:intron | 35.0% | |
| ATTAATCAAGCATTCTCGTG+AGG | - | chr3_4:77413559-77413578 | Msa0523950:CDS | 35.0% | |
| AACCATGCATTATGGCAATA+TGG | + | chr3_4:77413648-77413667 | None:intergenic | 35.0% | |
| CGAAAAAAGAAGTGAAAGAG+AGG | + | chr3_4:77413734-77413753 | None:intergenic | 35.0% | |
| !!! | CTCTTTCACTTCTTTTTTCG+GGG | - | chr3_4:77413734-77413753 | Msa0523950:intron | 35.0% |
| ACGTGATATTGTGACGAAAA+AGG | + | chr3_4:77413808-77413827 | None:intergenic | 35.0% | |
| TCGTCACAATATCACGTATA+TGG | - | chr3_4:77413811-77413830 | Msa0523950:intron | 35.0% | |
| AACTTCAGGAGAGATTTCAA+AGG | + | chr3_4:77413890-77413909 | None:intergenic | 35.0% | |
| CAAGTTATTTGCAGAACTTC+AGG | + | chr3_4:77413904-77413923 | None:intergenic | 35.0% | |
| !!! | TCTGGCTTTCATTTTGTTCT+TGG | - | chr3_4:77414202-77414221 | Msa0523950:intron | 35.0% |
| ! | CTTTCATTTTGTTCTTGGCA+TGG | - | chr3_4:77414207-77414226 | Msa0523950:intron | 35.0% |
| ! | TTCATTTTGTTCTTGGCATG+GGG | - | chr3_4:77414209-77414228 | Msa0523950:intron | 35.0% |
| GCATGTTAGGCTTCTTATTA+CGG | - | chr3_4:77414328-77414347 | Msa0523950:intron | 35.0% | |
| TGAAAGTTTATGGGAATGAG+AGG | - | chr3_4:77414442-77414461 | Msa0523950:intron | 35.0% | |
| GGATAGTCTACAGTTACAAA+TGG | + | chr3_4:77414521-77414540 | None:intergenic | 35.0% | |
| TCAATTTGTGTCTCAGTTTC+AGG | - | chr3_4:77414551-77414570 | Msa0523950:intron | 35.0% | |
| CAACAGATAAAGCGTGTAAT+AGG | + | chr3_4:77414703-77414722 | None:intergenic | 35.0% | |
| TTACACGCTTTATCTGTTGA+CGG | - | chr3_4:77414704-77414723 | Msa0523950:intron | 35.0% | |
| AGAAATTAGGGGAAAGTGAT+TGG | - | chr3_4:77414810-77414829 | Msa0523950:intron | 35.0% | |
| !! | TAAGTCGTCCTTTTGATGAT+TGG | - | chr3_4:77415188-77415207 | Msa0523950:intron | 35.0% |
| ATAAGATGAGGACTGAATTG+AGG | - | chr3_4:77415274-77415293 | Msa0523950:intron | 35.0% | |
| TGGACTTGAATCTTGAAAGA+AGG | - | chr3_4:77415447-77415466 | Msa0523950:intron | 35.0% | |
| TTGATGCAGTAACCTCTTTA+TGG | - | chr3_4:77415513-77415532 | Msa0523950:intron | 35.0% | |
| CTTAGGGTTAAACCATAAAG+AGG | + | chr3_4:77415528-77415547 | None:intergenic | 35.0% | |
| ATTTAATCACAGACGCATTC+AGG | - | chr3_4:77415574-77415593 | Msa0523950:intron | 35.0% | |
| ! | AAGTTTGTTTGTCAGATTGG+TGG | + | chr3_4:77415627-77415646 | None:intergenic | 35.0% |
| TCTGACAAACAAACTTGATC+GGG | - | chr3_4:77415631-77415650 | Msa0523950:intron | 35.0% | |
| ATACTTTGCAGCTTCTAACT+GGG | + | chr3_4:77415754-77415773 | None:intergenic | 35.0% | |
| GATGTGATCAAATACTGCAT+AGG | - | chr3_4:77415774-77415793 | Msa0523950:CDS | 35.0% | |
| CTATAATATGATGCGGATCA+CGG | + | chr3_4:77415832-77415851 | None:intergenic | 35.0% | |
| TGGGAGACTATAATATGATG+CGG | + | chr3_4:77415839-77415858 | None:intergenic | 35.0% | |
| ATAGTCTCCCATGTAATCAA+AGG | - | chr3_4:77415848-77415867 | Msa0523950:CDS | 35.0% | |
| CTTGTACCAATGGAAAACAA+TGG | + | chr3_4:77415935-77415954 | None:intergenic | 35.0% | |
| GATACTACACATGAAGTTGA+GGG | + | chr3_4:77416005-77416024 | None:intergenic | 35.0% | |
| TTTAACATGTTAATGAGGGC+CGG | + | chr3_4:77416029-77416048 | None:intergenic | 35.0% | |
| ! | CTCTATCTCTCTGGATTAGA+TGG | - | chr3_4:77412667-77412686 | Msa0523950:three_prime_UTR | 40.0% |
| TCTAAATTCCGTACCTAGGT+AGG | + | chr3_4:77412940-77412959 | None:intergenic | 40.0% | |
| GTACGGAATTTAGAGACGAA+CGG | - | chr3_4:77412946-77412965 | Msa0523950:three_prime_UTR | 40.0% | |
| TACGGAATTTAGAGACGAAC+GGG | - | chr3_4:77412947-77412966 | Msa0523950:three_prime_UTR | 40.0% | |
| !! | AGCTTGTTGACCCAATTGTA+TGG | + | chr3_4:77413154-77413173 | None:intergenic | 40.0% |
| CAAACAGAAGGTTTAGCATC+GGG | - | chr3_4:77413471-77413490 | Msa0523950:intron | 40.0% | |
| AAACAGAAGGTTTAGCATCG+GGG | - | chr3_4:77413472-77413491 | Msa0523950:intron | 40.0% | |
| ! | TATTGTGACGAAAAAGGTGC+TGG | + | chr3_4:77413802-77413821 | None:intergenic | 40.0% |
| ! | TATGTAGGAAGGTGCATGTT+AGG | - | chr3_4:77414315-77414334 | Msa0523950:intron | 40.0% |
| !! | AGAAAGGGGGAAGTGTTTAT+TGG | - | chr3_4:77414410-77414429 | Msa0523950:intron | 40.0% |
| AGACTCTCGAATTTCTTGGA+AGG | - | chr3_4:77414492-77414511 | Msa0523950:intron | 40.0% | |
| GACTCTCGAATTTCTTGGAA+GGG | - | chr3_4:77414493-77414512 | Msa0523950:intron | 40.0% | |
| ATTCTGTTTCAACAGAGGGA+TGG | + | chr3_4:77414597-77414616 | None:intergenic | 40.0% | |
| CTGGATTCTGTTTCAACAGA+GGG | + | chr3_4:77414601-77414620 | None:intergenic | 40.0% | |
| ACTGGATTCTGTTTCAACAG+AGG | + | chr3_4:77414602-77414621 | None:intergenic | 40.0% | |
| !!! | AGGGGAAAGTGATTGGTTTT+TGG | - | chr3_4:77414817-77414836 | Msa0523950:intron | 40.0% |
| !!! | AAGTGATTGGTTTTTGGCTG+AGG | - | chr3_4:77414823-77414842 | Msa0523950:intron | 40.0% |
| CAAATCTTCAACTGCTTCTG+CGG | - | chr3_4:77414887-77414906 | Msa0523950:intron | 40.0% | |
| CTTGTTTCAAATATCACCCC+CGG | - | chr3_4:77414932-77414951 | Msa0523950:intron | 40.0% | |
| AGCTATCTGTTGAGATGTTG+TGG | + | chr3_4:77415053-77415072 | None:intergenic | 40.0% | |
| CAACATCTCAACAGATAGCT+AGG | - | chr3_4:77415053-77415072 | Msa0523950:intron | 40.0% | |
| CATACTATGCACTTTCCTGT+GGG | - | chr3_4:77415089-77415108 | Msa0523950:intron | 40.0% | |
| !! | TACTTTTGAGAACACAGGAC+AGG | - | chr3_4:77415126-77415145 | Msa0523950:intron | 40.0% |
| AGGACGACTTAAACATCTGA+TGG | + | chr3_4:77415179-77415198 | None:intergenic | 40.0% | |
| CTGCATCACCAATCATCAAA+AGG | + | chr3_4:77415199-77415218 | None:intergenic | 40.0% | |
| !!! | CTTTTGATGATTGGTGATGC+AGG | - | chr3_4:77415197-77415216 | Msa0523950:intron | 40.0% |
| AGATTGACAAAGTCACTGCT+GGG | - | chr3_4:77415417-77415436 | Msa0523950:intron | 40.0% | |
| CATACTTTGCAGCTTCTAAC+TGG | + | chr3_4:77415755-77415774 | None:intergenic | 40.0% | |
| CACTGCAGATATGGAGATAA+GGG | + | chr3_4:77415802-77415821 | None:intergenic | 40.0% | |
| CTTATCTCCATATCTGCAGT+GGG | - | chr3_4:77415801-77415820 | Msa0523950:CDS | 40.0% | |
| TTTGGCATTTCGGAGATCAA+AGG | - | chr3_4:77415905-77415924 | Msa0523950:intron | 40.0% | |
| GGATACTACACATGAAGTTG+AGG | + | chr3_4:77416006-77416025 | None:intergenic | 40.0% | |
| AACTTCATGTGTAGTATCCC+CGG | - | chr3_4:77416007-77416026 | Msa0523950:CDS | 40.0% | |
| TTAACATGTTAATGAGGGCC+GGG | + | chr3_4:77416028-77416047 | None:intergenic | 40.0% | |
| CTTCTACTTCTACTAGCACC+AGG | - | chr3_4:77412756-77412775 | Msa0523950:three_prime_UTR | 45.0% | |
| GCGTTTAACGTTGGAATCGA+CGG | + | chr3_4:77412795-77412814 | None:intergenic | 45.0% | |
| ATTTGGGTACCTACCTACCT+AGG | - | chr3_4:77412924-77412943 | Msa0523950:three_prime_UTR | 45.0% | |
| AATTCCGTACCTAGGTAGGT+AGG | + | chr3_4:77412936-77412955 | None:intergenic | 45.0% | |
| CGTCTCTAAATTCCGTACCT+AGG | + | chr3_4:77412944-77412963 | None:intergenic | 45.0% | |
| GCAATATGGCCTACAAGTCT+AGG | + | chr3_4:77413634-77413653 | None:intergenic | 45.0% | |
| GGCCATATTGCCATAATGCA+TGG | - | chr3_4:77413643-77413662 | Msa0523950:intron | 45.0% | |
| GGGACGAACAAAAAGCTGAA+AGG | + | chr3_4:77414020-77414039 | None:intergenic | 45.0% | |
| TTTCCTGGGAACTGACTACA+GGG | + | chr3_4:77414040-77414059 | None:intergenic | 45.0% | |
| ! | TTTTCCTGGGAACTGACTAC+AGG | + | chr3_4:77414041-77414060 | None:intergenic | 45.0% |
| ! | AGAGTCGACGTGATTTTCCT+GGG | + | chr3_4:77414054-77414073 | None:intergenic | 45.0% |
| ! | AAGAGTCGACGTGATTTTCC+TGG | + | chr3_4:77414055-77414074 | None:intergenic | 45.0% |
| TTTGTTCTTGGCATGGGGTT+TGG | - | chr3_4:77414214-77414233 | Msa0523950:intron | 45.0% | |
| TTGTTCTTGGCATGGGGTTT+GGG | - | chr3_4:77414215-77414234 | Msa0523950:intron | 45.0% | |
| GGAGAGACTCTCGAATTTCT+TGG | - | chr3_4:77414488-77414507 | Msa0523950:intron | 45.0% | |
| CGCAGAAGCAGTTGAAGATT+TGG | + | chr3_4:77414889-77414908 | None:intergenic | 45.0% | |
| GCATACTATGCACTTTCCTG+TGG | - | chr3_4:77415088-77415107 | Msa0523950:intron | 45.0% | |
| CTGAATTGAGGTCTGTACCT+TGG | - | chr3_4:77415286-77415305 | Msa0523950:intron | 45.0% | |
| GAGATTGACAAAGTCACTGC+TGG | - | chr3_4:77415416-77415435 | Msa0523950:intron | 45.0% | |
| GAAGTGGAGAACGTTCAGTT+TGG | - | chr3_4:77415686-77415705 | Msa0523950:intron | 45.0% | |
| CCACTGCAGATATGGAGATA+AGG | + | chr3_4:77415803-77415822 | None:intergenic | 45.0% | |
| CCTTATCTCCATATCTGCAG+TGG | - | chr3_4:77415800-77415819 | Msa0523950:CDS | 45.0% | |
| ! | AACTGCAGGTCTTGTACCAA+TGG | + | chr3_4:77415945-77415964 | None:intergenic | 45.0% |
| TAACATGTTAATGAGGGCCG+GGG | + | chr3_4:77416027-77416046 | None:intergenic | 45.0% | |
| !! | AAATATTAAAAAAAAAAGAA+AGG | + | chr3_4:77413180-77413199 | None:intergenic | 5.0% |
| !! | AAAAGTAAATTAAAATTTAT+TGG | + | chr3_4:77413371-77413390 | None:intergenic | 5.0% |
| GCATCAGCTCTCTATCTCTC+TGG | - | chr3_4:77412658-77412677 | Msa0523950:three_prime_UTR | 50.0% | |
| TAGCACCAGGCATGTTTCAC+AGG | - | chr3_4:77412769-77412788 | Msa0523950:three_prime_UTR | 50.0% | |
| GAGGAATGCGCGTTTAACGT+TGG | + | chr3_4:77412804-77412823 | None:intergenic | 50.0% | |
| GGTACCTACCTACCTAGGTA+CGG | - | chr3_4:77412929-77412948 | Msa0523950:three_prime_UTR | 50.0% | |
| ! | GTTATCGCCTCCGCTTGTTT+TGG | + | chr3_4:77412979-77412998 | None:intergenic | 50.0% |
| AACAAGCGGAGGCGATAACT+TGG | - | chr3_4:77412980-77412999 | Msa0523950:CDS | 50.0% | |
| ACAAGCGGAGGCGATAACTT+GGG | - | chr3_4:77412981-77413000 | Msa0523950:CDS | 50.0% | |
| GGGTAGAGTCCTAGACTTGT+AGG | - | chr3_4:77413622-77413641 | Msa0523950:intron | 50.0% | |
| TGTTCTTGGCATGGGGTTTG+GGG | - | chr3_4:77414216-77414235 | Msa0523950:intron | 50.0% | |
| ACCAGTTTCTATCGGTGCAC+TGG | - | chr3_4:77414676-77414695 | Msa0523950:intron | 50.0% | |
| TCTTCAACTGCTTCTGCGGA+TGG | - | chr3_4:77414891-77414910 | Msa0523950:intron | 50.0% | |
| !! | GGAGCGCCATTGTTTTCCAT+TGG | - | chr3_4:77415926-77415945 | Msa0523950:intron | 50.0% |
| ! | CGAGTGCAAGTGTATCGACG+AGG | + | chr3_4:77412823-77412842 | None:intergenic | 55.0% |
| CGGGCTTCCTCCAAAACAAG+CGG | - | chr3_4:77412966-77412985 | Msa0523950:exon | 55.0% | |
| GCTTCCTCCAAAACAAGCGG+AGG | - | chr3_4:77412969-77412988 | Msa0523950:exon | 55.0% | |
| !!! | ATCGCCTCCGCTTGTTTTGG+AGG | + | chr3_4:77412976-77412995 | None:intergenic | 55.0% |
| ! | GAAGGTTTAGCATCGGGGAC+AGG | - | chr3_4:77413477-77413496 | Msa0523950:intron | 55.0% |
| ! | GCCAGTGCACCGATAGAAAC+TGG | + | chr3_4:77414680-77414699 | None:intergenic | 55.0% |
| AGTCACTGCTGGGCAACGAT+TGG | - | chr3_4:77415427-77415446 | Msa0523950:intron | 55.0% | |
| GACGGCCTGTGAAACATGCC+TGG | + | chr3_4:77412777-77412796 | None:intergenic | 60.0% | |
| CGTCCCTGTAGTCAGTTCCC+AGG | - | chr3_4:77414034-77414053 | Msa0523950:intron | 60.0% | |
| GGCGAGACCCACTGCAGATA+TGG | + | chr3_4:77415811-77415830 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77412602 | 77416224 | 77412602 | ID=Msa0523950;Name=Msa0523950 |
| chr3_4 | mRNA | 77412602 | 77416224 | 77412602 | ID=Msa0523950-mRNA-1;Parent=Msa0523950;Name=Msa0523950-mRNA-1;_AED=0.06;_eAED=0.06;_QI=84|1|1|1|1|1|6|373|222 |
| chr3_4 | exon | 77412602 | 77413094 | 77412602 | ID=Msa0523950-mRNA-1:exon:22728;Parent=Msa0523950-mRNA-1 |
| chr3_4 | exon | 77413174 | 77413240 | 77413174 | ID=Msa0523950-mRNA-1:exon:22727;Parent=Msa0523950-mRNA-1 |
| chr3_4 | exon | 77413358 | 77413414 | 77413358 | ID=Msa0523950-mRNA-1:exon:22726;Parent=Msa0523950-mRNA-1 |
| chr3_4 | exon | 77413531 | 77413607 | 77413531 | ID=Msa0523950-mRNA-1:exon:22725;Parent=Msa0523950-mRNA-1 |
| chr3_4 | exon | 77415689 | 77415880 | 77415689 | ID=Msa0523950-mRNA-1:exon:22724;Parent=Msa0523950-mRNA-1 |
| chr3_4 | exon | 77415985 | 77416224 | 77415985 | ID=Msa0523950-mRNA-1:exon:22723;Parent=Msa0523950-mRNA-1 |
| chr3_4 | five_prime_UTR | 77416141 | 77416224 | 77416141 | ID=Msa0523950-mRNA-1:five_prime_utr;Parent=Msa0523950-mRNA-1 |
| chr3_4 | CDS | 77415985 | 77416140 | 77415985 | ID=Msa0523950-mRNA-1:cds;Parent=Msa0523950-mRNA-1 |
| chr3_4 | CDS | 77415689 | 77415880 | 77415689 | ID=Msa0523950-mRNA-1:cds;Parent=Msa0523950-mRNA-1 |
| chr3_4 | CDS | 77413531 | 77413607 | 77413531 | ID=Msa0523950-mRNA-1:cds;Parent=Msa0523950-mRNA-1 |
| chr3_4 | CDS | 77413358 | 77413414 | 77413358 | ID=Msa0523950-mRNA-1:cds;Parent=Msa0523950-mRNA-1 |
| chr3_4 | CDS | 77413174 | 77413240 | 77413174 | ID=Msa0523950-mRNA-1:cds;Parent=Msa0523950-mRNA-1 |
| chr3_4 | CDS | 77412975 | 77413094 | 77412975 | ID=Msa0523950-mRNA-1:cds;Parent=Msa0523950-mRNA-1 |
| chr3_4 | three_prime_UTR | 77412602 | 77412974 | 77412602 | ID=Msa0523950-mRNA-1:three_prime_utr;Parent=Msa0523950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
