Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415370 | sp|Q9GZT6|CC90B_HUMAN | 27.919 | 197 | 124 | 2 | 42 | 220 | 56 | 252 | 4.21e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415370 | B7FKU2 | 97.321 | 224 | 4 | 1 | 1 | 222 | 1 | 224 | 3.03e-155 | 438 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0387010 | Msa1415370 | 0.829880 | 4.018259e-55 | -8.615850e-47 |
| Msa0523950 | Msa1415370 | 0.875879 | 2.174804e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415370 | MtrunA17_Chr3g0145131 | 96.460 | 226 | 4 | 1 | 1 | 222 | 1 | 226 | 7.32e-159 | 438 |
| Msa1415370 | MtrunA17_Chr8g0372241 | 74.877 | 203 | 49 | 1 | 22 | 222 | 39 | 241 | 9.93e-109 | 312 |
| Msa1415370 | MtrunA17_Chr5g0405011 | 69.907 | 216 | 57 | 2 | 7 | 222 | 26 | 233 | 1.26e-105 | 304 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415370 | AT2G16460.1 | 72.174 | 230 | 56 | 2 | 1 | 222 | 1 | 230 | 5.39e-114 | 325 |
| Msa1415370 | AT3G51090.1 | 73.958 | 192 | 50 | 0 | 31 | 222 | 107 | 298 | 8.42e-101 | 294 |
| Msa1415370 | AT3G51090.2 | 71.242 | 153 | 44 | 0 | 31 | 183 | 107 | 259 | 2.42e-72 | 221 |
| Msa1415370 | AT2G16460.2 | 66.071 | 168 | 49 | 1 | 1 | 160 | 1 | 168 | 7.32e-71 | 214 |
| Msa1415370 | AT2G35090.1 | 27.841 | 176 | 81 | 4 | 47 | 222 | 28 | 157 | 1.01e-13 | 67.0 |
| Msa1415370 | AT2G35070.2 | 27.711 | 166 | 74 | 3 | 47 | 212 | 28 | 147 | 3.17e-12 | 62.8 |
| Msa1415370 | AT2G35070.1 | 27.711 | 166 | 74 | 3 | 47 | 212 | 28 | 147 | 3.17e-12 | 62.8 |
Find 65 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAACATCATTGTTATTAA+TGG | 0.113327 | tig0024203:-44063 | Msa1415370:three_prime_UTR |
| TTTACGGATTAGAAGATTAA+TGG | 0.209722 | tig0024203:-44093 | Msa1415370:three_prime_UTR |
| ATAGAGAGAATTATTATTTA+CGG | 0.252202 | tig0024203:-44109 | Msa1415370:three_prime_UTR |
| CATACTTTGCAGCTTCTAAC+TGG | 0.256276 | tig0024203:+44486 | None:intergenic |
| ATGTTAAAATTGATTGTATT+TGG | 0.261246 | tig0024203:-44197 | Msa1415370:three_prime_UTR |
| AGAAGGAAGAAAGCGGGTTT+TGG | 0.273207 | tig0024203:-47640 | None:intergenic |
| ATTGTTATTAATGGAATGTT+AGG | 0.274192 | tig0024203:-44054 | Msa1415370:three_prime_UTR |
| ATTTAATCACAGACGCATTC+AGG | 0.308541 | tig0024203:-44664 | Msa1415370:intron |
| GTTATCGCCTCCGCTTGTTT+TGG | 0.313642 | tig0024203:+47260 | None:intergenic |
| ATCAAGTTTGTTTGTCAGAT+TGG | 0.379537 | tig0024203:+44611 | None:intergenic |
| GGCGAGACCCACTGCAGATA+TGG | 0.381238 | tig0024203:+44430 | None:intergenic |
| AATTCTATCTACTTTCTGAT+TGG | 0.391161 | tig0024203:+44155 | None:intergenic |
| CTCTATCTCTCTGGATTAGA+TGG | 0.405673 | tig0024203:-47569 | Msa1415370:exon |
| ATTGATTGTATTTGGTTGTT+GGG | 0.416764 | tig0024203:-44189 | Msa1415370:three_prime_UTR |
| AACAAGCGGAGGCGATAACT+TGG | 0.423397 | tig0024203:-47256 | Msa1415370:CDS |
| ACAATTCACCTTTGATTACA+TGG | 0.433146 | tig0024203:+44382 | None:intergenic |
| AATTGATTGTATTTGGTTGT+TGG | 0.449835 | tig0024203:-44190 | Msa1415370:three_prime_UTR |
| TACGGAATTTAGAGACGAAC+GGG | 0.458143 | tig0024203:-47289 | Msa1415370:CDS |
| ATCTGAAGTCAAAACTTCTC+AGG | 0.465665 | tig0024203:-47120 | Msa1415370:intron |
| TAGCACCAGGCATGTTTCAC+AGG | 0.468804 | tig0024203:-47467 | Msa1415370:CDS |
| GCATCAGCTCTCTATCTCTC+TGG | 0.470218 | tig0024203:-47578 | Msa1415370:five_prime_UTR |
| AAGTTTGTTTGTCAGATTGG+TGG | 0.471335 | tig0024203:+44614 | None:intergenic |
| CACTGCAGATATGGAGATAA+GGG | 0.479719 | tig0024203:+44439 | None:intergenic |
| ATCAAAGGTGAATTGTGTTA+TGG | 0.485398 | tig0024203:-44375 | Msa1415370:three_prime_UTR |
| GAGATTGACAAAGTCACTGC+TGG | 0.485809 | tig0024203:-44822 | Msa1415370:CDS |
| CCACTGCAGATATGGAGATA+AGG | 0.487152 | tig0024203:+44438 | None:intergenic |
| TGGACTTGAATCTTGAAAGA+AGG | 0.491978 | tig0024203:-44791 | Msa1415370:intron |
| TCTGACAAACAAACTTGATC+GGG | 0.498087 | tig0024203:-44607 | Msa1415370:intron |
| TTAACATGTTAATGAGGGCC+GGG | 0.498734 | tig0024203:+44213 | None:intergenic |
| AGTCACTGCTGGGCAACGAT+TGG | 0.500665 | tig0024203:-44811 | Msa1415370:CDS |
| TTTAACATGTTAATGAGGGC+CGG | 0.510450 | tig0024203:+44212 | None:intergenic |
| CTTCTACTTCTACTAGCACC+AGG | 0.511035 | tig0024203:-47480 | Msa1415370:CDS |
| TGAAGTTCTTAATGACAGCT+TGG | 0.512695 | tig0024203:-47225 | Msa1415370:CDS |
| ATCTGACAAACAAACTTGAT+CGG | 0.523172 | tig0024203:-44608 | Msa1415370:CDS |
| CTATAATATGATGCGGATCA+CGG | 0.523976 | tig0024203:+44409 | None:intergenic |
| AACTTCATGTGTAGTATCCC+CGG | 0.524399 | tig0024203:-44231 | Msa1415370:three_prime_UTR |
| CAATTCACCTTTGATTACAT+GGG | 0.537855 | tig0024203:+44383 | None:intergenic |
| ATACTTTGCAGCTTCTAACT+GGG | 0.540140 | tig0024203:+44487 | None:intergenic |
| CCTTATCTCCATATCTGCAG+TGG | 0.542460 | tig0024203:-44438 | Msa1415370:CDS |
| TGCTAGTAGAAGTAGAAGAA+AGG | 0.547264 | tig0024203:+47485 | None:intergenic |
| AATGTTACAAATGAAACTGC+AGG | 0.549552 | tig0024203:+44282 | None:intergenic |
| TAAGAAAGAAGGAAGAAAGC+GGG | 0.554167 | tig0024203:-47646 | None:intergenic |
| GAGGAATGCGCGTTTAACGT+TGG | 0.554552 | tig0024203:+47435 | None:intergenic |
| AACTGCAGGTCTTGTACCAA+TGG | 0.554731 | tig0024203:+44296 | None:intergenic |
| TTTGGCATTTCGGAGATCAA+AGG | 0.558059 | tig0024203:-44333 | Msa1415370:three_prime_UTR |
| TAACATGTTAATGAGGGCCG+GGG | 0.567134 | tig0024203:+44214 | None:intergenic |
| GCGTTTAACGTTGGAATCGA+CGG | 0.571613 | tig0024203:+47444 | None:intergenic |
| CTTATCTCCATATCTGCAGT+GGG | 0.571660 | tig0024203:-44437 | Msa1415370:CDS |
| ATAAGATGAGGACTGAATTG+AGG | 0.579482 | tig0024203:-44964 | Msa1415370:intron |
| GACGGCCTGTGAAACATGCC+TGG | 0.591005 | tig0024203:+47462 | None:intergenic |
| GGATACTACACATGAAGTTG+AGG | 0.592966 | tig0024203:+44235 | None:intergenic |
| ATAGTCTCCCATGTAATCAA+AGG | 0.599325 | tig0024203:-44390 | Msa1415370:exon |
| GATACTACACATGAAGTTGA+GGG | 0.600892 | tig0024203:+44236 | None:intergenic |
| AGAAAGGAATAAAGAAGCGA+CGG | 0.605280 | tig0024203:+47501 | None:intergenic |
| GATGTGATCAAATACTGCAT+AGG | 0.606023 | tig0024203:-44464 | Msa1415370:CDS |
| ACAAGCGGAGGCGATAACTT+GGG | 0.608734 | tig0024203:-47255 | Msa1415370:CDS |
| GTACGGAATTTAGAGACGAA+CGG | 0.611233 | tig0024203:-47290 | Msa1415370:CDS |
| ATAAGAAAGAAGGAAGAAAG+CGG | 0.624424 | tig0024203:-47647 | None:intergenic |
| AGATTGACAAAGTCACTGCT+GGG | 0.625895 | tig0024203:-44821 | Msa1415370:CDS |
| GTAATGACATAGATAAGATG+AGG | 0.649950 | tig0024203:-44976 | Msa1415370:CDS |
| GCTTCCTCCAAAACAAGCGG+AGG | 0.660706 | tig0024203:-47267 | Msa1415370:CDS |
| CGGGCTTCCTCCAAAACAAG+CGG | 0.661061 | tig0024203:-47270 | Msa1415370:CDS |
| TGGGAGACTATAATATGATG+CGG | 0.668275 | tig0024203:+44402 | None:intergenic |
| CTTGTACCAATGGAAAACAA+TGG | 0.671646 | tig0024203:+44306 | None:intergenic |
| CGAGTGCAAGTGTATCGACG+AGG | 0.710387 | tig0024203:+47416 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTTATAATAAGAATAT+GGG | - | tig0024203:44836-44855 | Msa1415370:intron | 10.0% |
| !! | AATTGAATTGAATTGAATTT+GGG | - | tig0024203:44342-44361 | Msa1415370:three_prime_UTR | 15.0% |
| !!! | AATTTATTGGTCTTTTAAAA+GGG | + | tig0024203:44790-44809 | None:intergenic | 15.0% |
| !!! | AAATTTATTGGTCTTTTAAA+AGG | + | tig0024203:44791-44810 | None:intergenic | 15.0% |
| !!! | GAGATTTTATAATAAGAATA+TGG | - | tig0024203:44835-44854 | Msa1415370:intron | 15.0% |
| !!! | CAGTTATGTTATTTATTTAT+AGG | - | tig0024203:45805-45824 | Msa1415370:intron | 15.0% |
| !! | ATAGTTTATTGAAAGTTTAT+GGG | - | tig0024203:45865-45884 | Msa1415370:intron | 15.0% |
| !! | ATAAATAAAGATGCAATATT+TGG | - | tig0024203:46391-46410 | Msa1415370:intron | 15.0% |
| !!! | CTCAATTTACAATTTTTTTT+TGG | - | tig0024203:47319-47338 | Msa1415370:intron | 15.0% |
| !! | ATGTTAAAATTGATTGTATT+TGG | - | tig0024203:47473-47492 | Msa1415370:CDS | 15.0% |
| !! | ATAGAGAGAATTATTATTTA+CGG | - | tig0024203:47561-47580 | Msa1415370:exon | 15.0% |
| !! | GAATTGAATTGAATTGAATT+TGG | - | tig0024203:44336-44355 | Msa1415370:three_prime_UTR | 20.0% |
| !!! | AATGTGCAAAATATCTTTTT+AGG | - | tig0024203:44683-44702 | Msa1415370:intron | 20.0% |
| !! | AAAATGCAAATTAAACTGAA+AGG | + | tig0024203:45294-45313 | None:intergenic | 20.0% |
| !! | AATTCCTAAATGACAATTAT+TGG | - | tig0024203:45405-45424 | Msa1415370:intron | 20.0% |
| !! | GATAGTTTATTGAAAGTTTA+TGG | - | tig0024203:45864-45883 | Msa1415370:intron | 20.0% |
| !! | AAGATATCTAATTCTTAGAA+GGG | - | tig0024203:45899-45918 | Msa1415370:intron | 20.0% |
| !! | TATTATATATGAGTAAACAC+TGG | + | tig0024203:46052-46071 | None:intergenic | 20.0% |
| !! | ATATAGATACCAATTTCTAT+CGG | - | tig0024203:46100-46119 | Msa1415370:intron | 20.0% |
| !!! | TAGATGTATTTTACTAAAAG+AGG | - | tig0024203:46201-46220 | Msa1415370:intron | 20.0% |
| !! | TTAGATGCAATAAGAAATTA+GGG | - | tig0024203:46230-46249 | Msa1415370:intron | 20.0% |
| !!! | TGCATCTTTATTTATAAATC+CGG | + | tig0024203:46386-46405 | None:intergenic | 20.0% |
| !! | TACAATATAGTACAATCTTA+GGG | + | tig0024203:46793-46812 | None:intergenic | 20.0% |
| !! | ATACAATATAGTACAATCTT+AGG | + | tig0024203:46794-46813 | None:intergenic | 20.0% |
| !! | ATAAATGTGATGATAACTTA+GGG | + | tig0024203:46976-46995 | None:intergenic | 20.0% |
| !! | AATAAATGTGATGATAACTT+AGG | + | tig0024203:46977-46996 | None:intergenic | 20.0% |
| !!! | TATGTATTTTGTTATTGAAG+TGG | - | tig0024203:47102-47121 | Msa1415370:intron | 20.0% |
| !!! | ACAATTTTTTTTTGGCATTT+CGG | - | tig0024203:47327-47346 | Msa1415370:intron | 20.0% |
| !!! | AGTTTCATTTGTAACATTTT+TGG | - | tig0024203:47393-47412 | Msa1415370:intron | 20.0% |
| !!! | GTTTCATTTGTAACATTTTT+GGG | - | tig0024203:47394-47413 | Msa1415370:intron | 20.0% |
| !!! | CAATTTTAACATGTTAATGA+GGG | + | tig0024203:47465-47484 | None:intergenic | 20.0% |
| !!! | TCAATTTTAACATGTTAATG+AGG | + | tig0024203:47466-47485 | None:intergenic | 20.0% |
| !!! | TGAAACATCATTGTTATTAA+TGG | - | tig0024203:47607-47626 | Msa1415370:five_prime_UTR | 20.0% |
| !!! | ATTGTTATTAATGGAATGTT+AGG | - | tig0024203:47616-47635 | Msa1415370:five_prime_UTR | 20.0% |
| ! | AAACCAAATTTCCATACAAT+TGG | - | tig0024203:44574-44593 | Msa1415370:intron | 25.0% |
| ! | AACCAAATTTCCATACAATT+GGG | - | tig0024203:44575-44594 | Msa1415370:intron | 25.0% |
| ! | AAAAATGCAACAAATGCTTA+TGG | + | tig0024203:44642-44661 | None:intergenic | 25.0% |
| !!! | GCAAAATATCTTTTTAGGTT+AGG | - | tig0024203:44688-44707 | Msa1415370:intron | 25.0% |
| ! | TAAAGATAAGTCCTAAAACA+TGG | - | tig0024203:44724-44743 | Msa1415370:intron | 25.0% |
| !!! | CAATTTTTTCACCATGTTTT+AGG | + | tig0024203:44738-44757 | None:intergenic | 25.0% |
| ! | TATAAAATCTCTGAATGTTC+AGG | + | tig0024203:44826-44845 | None:intergenic | 25.0% |
| !!! | GAGTGATGATGATATATTTT+TGG | - | tig0024203:44858-44877 | Msa1415370:intron | 25.0% |
| !! | TTTTAACAAACCATGCATTA+TGG | + | tig0024203:45088-45107 | None:intergenic | 25.0% |
| ! | CTGACTAAACTATATAGTAA+TGG | - | tig0024203:45208-45227 | Msa1415370:intron | 25.0% |
| !! | ACTTCCAATAATTGTCATTT+AGG | + | tig0024203:45412-45431 | None:intergenic | 25.0% |
| ! | GAATGAATAGAGAAAAGAAA+GGG | - | tig0024203:45827-45846 | Msa1415370:intron | 25.0% |
| ! | AATGAATAGAGAAAAGAAAG+GGG | - | tig0024203:45828-45847 | Msa1415370:intron | 25.0% |
| !! | CTTCTAAGAATTAGATATCT+TGG | + | tig0024203:45900-45919 | None:intergenic | 25.0% |
| ! | CAAGATATCTAATTCTTAGA+AGG | - | tig0024203:45898-45917 | Msa1415370:intron | 25.0% |
| ! | ACACAAATTGAAATAGGAAT+AGG | + | tig0024203:45974-45993 | None:intergenic | 25.0% |
| ! | TACAGATAAAGCATGTAATA+GGG | + | tig0024203:46134-46153 | None:intergenic | 25.0% |
| ! | TGTAACTTTATTCCTAAACA+AGG | - | tig0024203:46169-46188 | Msa1415370:intron | 25.0% |
| !!! | CTAAATTTAATGCCTTGTTT+AGG | + | tig0024203:46184-46203 | None:intergenic | 25.0% |
| ! | CTTAGATGCAATAAGAAATT+AGG | - | tig0024203:46229-46248 | Msa1415370:intron | 25.0% |
| ! | TAGATGCAATAAGAAATTAG+GGG | - | tig0024203:46231-46250 | Msa1415370:intron | 25.0% |
| !! | ATCTTTATTTATAAATCCGG+GGG | + | tig0024203:46383-46402 | None:intergenic | 25.0% |
| !! | CATCTTTATTTATAAATCCG+GGG | + | tig0024203:46384-46403 | None:intergenic | 25.0% |
| !! | GCATCTTTATTTATAAATCC+GGG | + | tig0024203:46385-46404 | None:intergenic | 25.0% |
| !!! | TTTGAAGTCTTTTGTGTATT+CGG | - | tig0024203:46437-46456 | Msa1415370:intron | 25.0% |
| ! | TATTTGAGTATAAACTTCCA+AGG | + | tig0024203:46738-46757 | None:intergenic | 25.0% |
| ! | TAATTGAAAAACTGCAAACA+TGG | - | tig0024203:46902-46921 | Msa1415370:intron | 25.0% |
| !!! | AAACATGGTTCTATTTTTTG+TGG | - | tig0024203:46917-46936 | Msa1415370:intron | 25.0% |
| !!! | TTGAAGTCTATATTGCTTTT+AGG | - | tig0024203:47142-47161 | Msa1415370:CDS | 25.0% |
| ! | AATTGATTGTATTTGGTTGT+TGG | - | tig0024203:47480-47499 | Msa1415370:CDS | 25.0% |
| ! | ATTGATTGTATTTGGTTGTT+GGG | - | tig0024203:47481-47500 | Msa1415370:CDS | 25.0% |
| ! | AATTCTATCTACTTTCTGAT+TGG | + | tig0024203:47518-47537 | None:intergenic | 25.0% |
| !!! | TTTACGGATTAGAAGATTAA+TGG | - | tig0024203:47577-47596 | Msa1415370:five_prime_UTR | 25.0% |
| !!! | TACAAACGTGCTTTTGATTT+GGG | - | tig0024203:44129-44148 | Msa1415370:three_prime_UTR | 30.0% |
| ! | CATCTCAGATTTTTGCATAT+CGG | + | tig0024203:44501-44520 | None:intergenic | 30.0% |
| AAAATTGATCACACTCTTTC+TGG | - | tig0024203:44751-44770 | Msa1415370:intron | 30.0% | |
| TACTGTATCTATCAAACAGA+AGG | - | tig0024203:44891-44910 | Msa1415370:intron | 30.0% | |
| CTATATGACATCTCAAAACT+CGG | + | tig0024203:44938-44957 | None:intergenic | 30.0% | |
| ACAAGACGTTGAAAAAGAAA+TGG | - | tig0024203:45033-45052 | Msa1415370:intron | 30.0% | |
| CAAGACGTTGAAAAAGAAAT+GGG | - | tig0024203:45034-45053 | Msa1415370:intron | 30.0% | |
| AAGAACTTAGTAAACTGCAA+AGG | - | tig0024203:45107-45126 | Msa1415370:intron | 30.0% | |
| ATTGCTGCATTATATATGCA+TGG | - | tig0024203:45139-45158 | Msa1415370:intron | 30.0% | |
| !!! | CTCTCTTTCACTTCTTTTTT+CGG | - | tig0024203:45164-45183 | Msa1415370:intron | 30.0% |
| !!! | TCTCTTTCACTTCTTTTTTC+GGG | - | tig0024203:45165-45184 | Msa1415370:intron | 30.0% |
| ACGTGATATTGTGATGAAAA+AGG | + | tig0024203:45240-45259 | None:intergenic | 30.0% | |
| TCATCACAATATCACGTATA+TGG | - | tig0024203:45243-45262 | Msa1415370:intron | 30.0% | |
| TGACAATTATTGGAAGTTCA+TGG | - | tig0024203:45415-45434 | Msa1415370:intron | 30.0% | |
| TATGATGTTGATACAAACTC+TGG | - | tig0024203:45616-45635 | Msa1415370:intron | 30.0% | |
| TATGTATACATGTAGGTGAT+TGG | - | tig0024203:45675-45694 | Msa1415370:intron | 30.0% | |
| TTGCATGATTCTAATTACGT+AGG | - | tig0024203:45732-45751 | Msa1415370:intron | 30.0% | |
| ATGATTCTAATTACGTAGGA+AGG | - | tig0024203:45736-45755 | Msa1415370:intron | 30.0% | |
| GGAATGAATAGAGAAAAGAA+AGG | - | tig0024203:45826-45845 | Msa1415370:intron | 30.0% | |
| ATGAATAGAGAAAAGAAAGG+GGG | - | tig0024203:45829-45848 | Msa1415370:intron | 30.0% | |
| ACTGAGACACAAATTGAAAT+AGG | + | tig0024203:45980-45999 | None:intergenic | 30.0% | |
| CTACAGATAAAGCATGTAAT+AGG | + | tig0024203:46135-46154 | None:intergenic | 30.0% | |
| TTACATGCTTTATCTGTAGA+CGG | - | tig0024203:46136-46155 | Msa1415370:intron | 30.0% | |
| TTAGGAATAAAGTTACAGTG+AGG | + | tig0024203:46166-46185 | None:intergenic | 30.0% | |
| ! | AAGATGCAATATTTGGAGTT+TGG | - | tig0024203:46398-46417 | Msa1415370:intron | 30.0% |
| ! | CAATATTTGGAGTTTGGATT+TGG | - | tig0024203:46404-46423 | Msa1415370:intron | 30.0% |
| ATAACATAGAAAAAACCCAC+AGG | + | tig0024203:46539-46558 | None:intergenic | 30.0% | |
| !! | TGTTATACTTTTGAGAACAC+AGG | - | tig0024203:46553-46572 | Msa1415370:intron | 30.0% |
| !! | TAAATCGTCCTTTTGATGAT+TGG | - | tig0024203:46620-46639 | Msa1415370:intron | 30.0% |
| GTAATGACATAGATAAGATG+AGG | - | tig0024203:46694-46713 | Msa1415370:intron | 30.0% | |
| ! | AAAATCAAATTTGCTTCAGG+TGG | + | tig0024203:46766-46785 | None:intergenic | 30.0% |
| ! | GTGAAAATCAAATTTGCTTC+AGG | + | tig0024203:46769-46788 | None:intergenic | 30.0% |
| ! | ATTTATTGATTGTCTGTGAC+AGG | - | tig0024203:46822-46841 | Msa1415370:intron | 30.0% |
| ! | ATCAAGTTTGTTTGTCAGAT+TGG | + | tig0024203:47062-47081 | None:intergenic | 30.0% |
| ATCTGACAAACAAACTTGAT+CGG | - | tig0024203:47062-47081 | Msa1415370:intron | 30.0% | |
| CAATTCACCTTTGATTACAT+GGG | + | tig0024203:47290-47309 | None:intergenic | 30.0% | |
| ACAATTCACCTTTGATTACA+TGG | + | tig0024203:47291-47310 | None:intergenic | 30.0% | |
| ATCAAAGGTGAATTGTGTTA+TGG | - | tig0024203:47295-47314 | Msa1415370:intron | 30.0% | |
| AATGTTACAAATGAAACTGC+AGG | + | tig0024203:47391-47410 | None:intergenic | 30.0% | |
| !! | GTACAAACGTGCTTTTGATT+TGG | - | tig0024203:44128-44147 | Msa1415370:three_prime_UTR | 35.0% |
| AGAAAGGAATAAAGAAGCGA+CGG | + | tig0024203:44172-44191 | None:intergenic | 35.0% | |
| TGCTAGTAGAAGTAGAAGAA+AGG | + | tig0024203:44188-44207 | None:intergenic | 35.0% | |
| TGAAGTTCTTAATGACAGCT+TGG | - | tig0024203:44445-44464 | Msa1415370:CDS | 35.0% | |
| ! | ATCTGAAGTCAAAACTTCTC+AGG | - | tig0024203:44550-44569 | Msa1415370:intron | 35.0% |
| GACCCAATTGTATGGAAATT+TGG | + | tig0024203:44580-44599 | None:intergenic | 35.0% | |
| TCAAACAGAAGGTTTAGCAT+CGG | - | tig0024203:44902-44921 | Msa1415370:intron | 35.0% | |
| ATTAATCAAGCATTCTCGTG+AGG | - | tig0024203:44991-45010 | Msa1415370:CDS | 35.0% | |
| AACCATGCATTATGGCAATA+TGG | + | tig0024203:45080-45099 | None:intergenic | 35.0% | |
| CGAAAAAAGAAGTGAAAGAG+AGG | + | tig0024203:45166-45185 | None:intergenic | 35.0% | |
| !!! | CTCTTTCACTTCTTTTTTCG+GGG | - | tig0024203:45166-45185 | Msa1415370:intron | 35.0% |
| ! | TATTGTGATGAAAAAGGTGC+TGG | + | tig0024203:45234-45253 | None:intergenic | 35.0% |
| AACTTCAGGAGAGATTTCAA+AGG | + | tig0024203:45322-45341 | None:intergenic | 35.0% | |
| CAAGTTATTTGCAGAACTTC+AGG | + | tig0024203:45336-45355 | None:intergenic | 35.0% | |
| !!! | TCTGGCTTTCATTTTGTTCT+TGG | - | tig0024203:45634-45653 | Msa1415370:intron | 35.0% |
| ! | CTTTCATTTTGTTCTTGGCA+GGG | - | tig0024203:45639-45658 | Msa1415370:intron | 35.0% |
| ! | TTTCATTTTGTTCTTGGCAG+GGG | - | tig0024203:45640-45659 | Msa1415370:intron | 35.0% |
| GGGAATCTATGTATACATGT+AGG | - | tig0024203:45668-45687 | Msa1415370:intron | 35.0% | |
| GCATGTTAGGCTTCTTATTA+CGG | - | tig0024203:45760-45779 | Msa1415370:intron | 35.0% | |
| TGAAAGTTTATGGGAATGAG+AGG | - | tig0024203:45874-45893 | Msa1415370:intron | 35.0% | |
| GGATAGTCTACAGTTACAAA+TGG | + | tig0024203:45953-45972 | None:intergenic | 35.0% | |
| TCAATTTGTGTCTCAGTTTC+AGG | - | tig0024203:45983-46002 | Msa1415370:intron | 35.0% | |
| AGAAATTAGGGGAAAGTGAT+TGG | - | tig0024203:46242-46261 | Msa1415370:intron | 35.0% | |
| GATAGCTAGGCATATTCTAT+AGG | - | tig0024203:46498-46517 | Msa1415370:intron | 35.0% | |
| AGGACGATTTAAACATCTGA+TGG | + | tig0024203:46611-46630 | None:intergenic | 35.0% | |
| ATAAGATGAGGACTGAATTG+AGG | - | tig0024203:46706-46725 | Msa1415370:intron | 35.0% | |
| TGGACTTGAATCTTGAAAGA+AGG | - | tig0024203:46879-46898 | Msa1415370:intron | 35.0% | |
| TTGATGCAGTAACCTCTTTA+TGG | - | tig0024203:46945-46964 | Msa1415370:intron | 35.0% | |
| CTTAGGGTTAAACCATAAAG+AGG | + | tig0024203:46960-46979 | None:intergenic | 35.0% | |
| ATTTAATCACAGACGCATTC+AGG | - | tig0024203:47006-47025 | Msa1415370:intron | 35.0% | |
| ! | AAGTTTGTTTGTCAGATTGG+TGG | + | tig0024203:47059-47078 | None:intergenic | 35.0% |
| TCTGACAAACAAACTTGATC+GGG | - | tig0024203:47063-47082 | Msa1415370:intron | 35.0% | |
| ATACTTTGCAGCTTCTAACT+GGG | + | tig0024203:47186-47205 | None:intergenic | 35.0% | |
| GATGTGATCAAATACTGCAT+AGG | - | tig0024203:47206-47225 | Msa1415370:CDS | 35.0% | |
| CTATAATATGATGCGGATCA+CGG | + | tig0024203:47264-47283 | None:intergenic | 35.0% | |
| TGGGAGACTATAATATGATG+CGG | + | tig0024203:47271-47290 | None:intergenic | 35.0% | |
| ATAGTCTCCCATGTAATCAA+AGG | - | tig0024203:47280-47299 | Msa1415370:CDS | 35.0% | |
| CTTGTACCAATGGAAAACAA+TGG | + | tig0024203:47367-47386 | None:intergenic | 35.0% | |
| GATACTACACATGAAGTTGA+GGG | + | tig0024203:47437-47456 | None:intergenic | 35.0% | |
| TTTAACATGTTAATGAGGGC+CGG | + | tig0024203:47461-47480 | None:intergenic | 35.0% | |
| ! | CTCTATCTCTCTGGATTAGA+TGG | - | tig0024203:44101-44120 | Msa1415370:three_prime_UTR | 40.0% |
| TCTAAATTCCGTACCTAGGT+AGG | + | tig0024203:44374-44393 | None:intergenic | 40.0% | |
| GTACGGAATTTAGAGACGAA+CGG | - | tig0024203:44380-44399 | Msa1415370:three_prime_UTR | 40.0% | |
| TACGGAATTTAGAGACGAAC+GGG | - | tig0024203:44381-44400 | Msa1415370:three_prime_UTR | 40.0% | |
| !! | AGCTTGTTGACCCAATTGTA+TGG | + | tig0024203:44588-44607 | None:intergenic | 40.0% |
| CAAACAGAAGGTTTAGCATC+GGG | - | tig0024203:44903-44922 | Msa1415370:intron | 40.0% | |
| AAACAGAAGGTTTAGCATCG+GGG | - | tig0024203:44904-44923 | Msa1415370:intron | 40.0% | |
| ! | GCTTTCATTTTGTTCTTGGC+AGG | - | tig0024203:45638-45657 | Msa1415370:intron | 40.0% |
| ! | TTCATTTTGTTCTTGGCAGG+GGG | - | tig0024203:45641-45660 | Msa1415370:intron | 40.0% |
| !! | AGAAAGGGGGAAGTGTTTAT+TGG | - | tig0024203:45842-45861 | Msa1415370:intron | 40.0% |
| AGACTCTCGAATTTCTTGGA+AGG | - | tig0024203:45924-45943 | Msa1415370:intron | 40.0% | |
| GACTCTCGAATTTCTTGGAA+GGG | - | tig0024203:45925-45944 | Msa1415370:intron | 40.0% | |
| ATTCTGTTTCAACAGAGGGA+TGG | + | tig0024203:46029-46048 | None:intergenic | 40.0% | |
| CTGGATTCTGTTTCAACAGA+GGG | + | tig0024203:46033-46052 | None:intergenic | 40.0% | |
| ACTGGATTCTGTTTCAACAG+AGG | + | tig0024203:46034-46053 | None:intergenic | 40.0% | |
| !!! | AGGGGAAAGTGATTGGTTTT+TGG | - | tig0024203:46249-46268 | Msa1415370:intron | 40.0% |
| !!! | AAGTGATTGGTTTTTGGCTG+AGG | - | tig0024203:46255-46274 | Msa1415370:intron | 40.0% |
| CAAATCTTCAACTGCTTCTG+CGG | - | tig0024203:46319-46338 | Msa1415370:intron | 40.0% | |
| CTTGTTTCAAATATCACCCC+CGG | - | tig0024203:46364-46383 | Msa1415370:intron | 40.0% | |
| AGCTATCTGTTGAGATGTTG+TGG | + | tig0024203:46485-46504 | None:intergenic | 40.0% | |
| CAACATCTCAACAGATAGCT+AGG | - | tig0024203:46485-46504 | Msa1415370:intron | 40.0% | |
| CATACTATGCACTTTCCTGT+GGG | - | tig0024203:46521-46540 | Msa1415370:intron | 40.0% | |
| !! | TACTTTTGAGAACACAGGAC+AGG | - | tig0024203:46558-46577 | Msa1415370:intron | 40.0% |
| CTGCATCACCAATCATCAAA+AGG | + | tig0024203:46631-46650 | None:intergenic | 40.0% | |
| !!! | CTTTTGATGATTGGTGATGC+AGG | - | tig0024203:46629-46648 | Msa1415370:intron | 40.0% |
| AGATTGACAAAGTCACTGCT+GGG | - | tig0024203:46849-46868 | Msa1415370:intron | 40.0% | |
| CATACTTTGCAGCTTCTAAC+TGG | + | tig0024203:47187-47206 | None:intergenic | 40.0% | |
| CACTGCAGATATGGAGATAA+GGG | + | tig0024203:47234-47253 | None:intergenic | 40.0% | |
| CTTATCTCCATATCTGCAGT+GGG | - | tig0024203:47233-47252 | Msa1415370:CDS | 40.0% | |
| TTTGGCATTTCGGAGATCAA+AGG | - | tig0024203:47337-47356 | Msa1415370:intron | 40.0% | |
| GGATACTACACATGAAGTTG+AGG | + | tig0024203:47438-47457 | None:intergenic | 40.0% | |
| AACTTCATGTGTAGTATCCC+CGG | - | tig0024203:47439-47458 | Msa1415370:CDS | 40.0% | |
| TTAACATGTTAATGAGGGCC+GGG | + | tig0024203:47460-47479 | None:intergenic | 40.0% | |
| CTTCTACTTCTACTAGCACC+AGG | - | tig0024203:44190-44209 | Msa1415370:three_prime_UTR | 45.0% | |
| GCGTTTAACGTTGGAATCGA+CGG | + | tig0024203:44229-44248 | None:intergenic | 45.0% | |
| ATTTGGGTACCTACCTACCT+AGG | - | tig0024203:44358-44377 | Msa1415370:three_prime_UTR | 45.0% | |
| AATTCCGTACCTAGGTAGGT+AGG | + | tig0024203:44370-44389 | None:intergenic | 45.0% | |
| CGTCTCTAAATTCCGTACCT+AGG | + | tig0024203:44378-44397 | None:intergenic | 45.0% | |
| GCAATATGGCCTACAAGTCT+AGG | + | tig0024203:45066-45085 | None:intergenic | 45.0% | |
| GGCCATATTGCCATAATGCA+TGG | - | tig0024203:45075-45094 | Msa1415370:intron | 45.0% | |
| GGGACGAACAAAAAGCTGAA+AGG | + | tig0024203:45452-45471 | None:intergenic | 45.0% | |
| TTTCCTGGGAACTGACTACA+GGG | + | tig0024203:45472-45491 | None:intergenic | 45.0% | |
| ! | TTTTCCTGGGAACTGACTAC+AGG | + | tig0024203:45473-45492 | None:intergenic | 45.0% |
| ! | AGAGTCGACGTGATTTTCCT+GGG | + | tig0024203:45486-45505 | None:intergenic | 45.0% |
| ! | AAGAGTCGACGTGATTTTCC+TGG | + | tig0024203:45487-45506 | None:intergenic | 45.0% |
| ! | TACGTAGGAAGGTGCATGTT+AGG | - | tig0024203:45747-45766 | Msa1415370:intron | 45.0% |
| GGAGAGACTCTCGAATTTCT+TGG | - | tig0024203:45920-45939 | Msa1415370:intron | 45.0% | |
| ACCAATTTCTATCGGTGCAC+TGG | - | tig0024203:46108-46127 | Msa1415370:intron | 45.0% | |
| CGCAGAAGCAGTTGAAGATT+TGG | + | tig0024203:46321-46340 | None:intergenic | 45.0% | |
| GCATACTATGCACTTTCCTG+TGG | - | tig0024203:46520-46539 | Msa1415370:intron | 45.0% | |
| CTGAATTGAGGTCTGTACCT+TGG | - | tig0024203:46718-46737 | Msa1415370:intron | 45.0% | |
| GAGATTGACAAAGTCACTGC+TGG | - | tig0024203:46848-46867 | Msa1415370:intron | 45.0% | |
| GAAGTGGAGAACGTTCAGTT+TGG | - | tig0024203:47118-47137 | Msa1415370:intron | 45.0% | |
| CCACTGCAGATATGGAGATA+AGG | + | tig0024203:47235-47254 | None:intergenic | 45.0% | |
| CCTTATCTCCATATCTGCAG+TGG | - | tig0024203:47232-47251 | Msa1415370:CDS | 45.0% | |
| ! | AACTGCAGGTCTTGTACCAA+TGG | + | tig0024203:47377-47396 | None:intergenic | 45.0% |
| TAACATGTTAATGAGGGCCG+GGG | + | tig0024203:47459-47478 | None:intergenic | 45.0% | |
| !! | TTAAATATTAAAAAAAAGAA+AGG | + | tig0024203:44614-44633 | None:intergenic | 5.0% |
| !! | AAAAGTAAATTAAAATTTAT+TGG | + | tig0024203:44803-44822 | None:intergenic | 5.0% |
| GCATCAGCTCTCTATCTCTC+TGG | - | tig0024203:44092-44111 | Msa1415370:three_prime_UTR | 50.0% | |
| TAGCACCAGGCATGTTTCAC+AGG | - | tig0024203:44203-44222 | Msa1415370:three_prime_UTR | 50.0% | |
| GAGGAATGCGCGTTTAACGT+TGG | + | tig0024203:44238-44257 | None:intergenic | 50.0% | |
| GGTACCTACCTACCTAGGTA+CGG | - | tig0024203:44363-44382 | Msa1415370:three_prime_UTR | 50.0% | |
| ! | GTTATCGCCTCCGCTTGTTT+TGG | + | tig0024203:44413-44432 | None:intergenic | 50.0% |
| AACAAGCGGAGGCGATAACT+TGG | - | tig0024203:44414-44433 | Msa1415370:CDS | 50.0% | |
| ACAAGCGGAGGCGATAACTT+GGG | - | tig0024203:44415-44434 | Msa1415370:CDS | 50.0% | |
| GGGTAGAGTCCTAGACTTGT+AGG | - | tig0024203:45054-45073 | Msa1415370:intron | 50.0% | |
| TTTGTTCTTGGCAGGGGGTT+TGG | - | tig0024203:45646-45665 | Msa1415370:intron | 50.0% | |
| TTGTTCTTGGCAGGGGGTTT+GGG | - | tig0024203:45647-45666 | Msa1415370:intron | 50.0% | |
| ! | GCCAGTGCACCGATAGAAAT+TGG | + | tig0024203:46112-46131 | None:intergenic | 50.0% |
| TCTTCAACTGCTTCTGCGGA+TGG | - | tig0024203:46323-46342 | Msa1415370:intron | 50.0% | |
| !! | GGAGCGCCATTGTTTTCCAT+TGG | - | tig0024203:47358-47377 | Msa1415370:intron | 50.0% |
| ! | CGAGTGCAAGTGTATCGACG+AGG | + | tig0024203:44257-44276 | None:intergenic | 55.0% |
| CGGGCTTCCTCCAAAACAAG+CGG | - | tig0024203:44400-44419 | Msa1415370:exon | 55.0% | |
| GCTTCCTCCAAAACAAGCGG+AGG | - | tig0024203:44403-44422 | Msa1415370:exon | 55.0% | |
| !!! | ATCGCCTCCGCTTGTTTTGG+AGG | + | tig0024203:44410-44429 | None:intergenic | 55.0% |
| ! | GAAGGTTTAGCATCGGGGAC+AGG | - | tig0024203:44909-44928 | Msa1415370:intron | 55.0% |
| TGTTCTTGGCAGGGGGTTTG+GGG | - | tig0024203:45648-45667 | Msa1415370:intron | 55.0% | |
| AGTCACTGCTGGGCAACGAT+TGG | - | tig0024203:46859-46878 | Msa1415370:intron | 55.0% | |
| GACGGCCTGTGAAACATGCC+TGG | + | tig0024203:44211-44230 | None:intergenic | 60.0% | |
| CGTCCCTGTAGTCAGTTCCC+AGG | - | tig0024203:45466-45485 | Msa1415370:intron | 60.0% | |
| GGCGAGACCCACTGCAGATA+TGG | + | tig0024203:47243-47262 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024203 | gene | 44036 | 47656 | 44036 | ID=Msa1415370;Name=Msa1415370 |
| tig0024203 | mRNA | 44036 | 47656 | 44036 | ID=Msa1415370-mRNA-1;Parent=Msa1415370;Name=Msa1415370-mRNA-1;_AED=0.06;_eAED=0.06;_QI=84|1|1|1|1|1|6|373|222 |
| tig0024203 | exon | 44036 | 44528 | 44036 | ID=Msa1415370-mRNA-1:exon:22369;Parent=Msa1415370-mRNA-1 |
| tig0024203 | exon | 44608 | 44674 | 44608 | ID=Msa1415370-mRNA-1:exon:22368;Parent=Msa1415370-mRNA-1 |
| tig0024203 | exon | 44792 | 44848 | 44792 | ID=Msa1415370-mRNA-1:exon:22367;Parent=Msa1415370-mRNA-1 |
| tig0024203 | exon | 44965 | 45041 | 44965 | ID=Msa1415370-mRNA-1:exon:22366;Parent=Msa1415370-mRNA-1 |
| tig0024203 | exon | 47121 | 47312 | 47121 | ID=Msa1415370-mRNA-1:exon:22365;Parent=Msa1415370-mRNA-1 |
| tig0024203 | exon | 47417 | 47656 | 47417 | ID=Msa1415370-mRNA-1:exon:22364;Parent=Msa1415370-mRNA-1 |
| tig0024203 | five_prime_UTR | 47573 | 47656 | 47573 | ID=Msa1415370-mRNA-1:five_prime_utr;Parent=Msa1415370-mRNA-1 |
| tig0024203 | CDS | 47417 | 47572 | 47417 | ID=Msa1415370-mRNA-1:cds;Parent=Msa1415370-mRNA-1 |
| tig0024203 | CDS | 47121 | 47312 | 47121 | ID=Msa1415370-mRNA-1:cds;Parent=Msa1415370-mRNA-1 |
| tig0024203 | CDS | 44965 | 45041 | 44965 | ID=Msa1415370-mRNA-1:cds;Parent=Msa1415370-mRNA-1 |
| tig0024203 | CDS | 44792 | 44848 | 44792 | ID=Msa1415370-mRNA-1:cds;Parent=Msa1415370-mRNA-1 |
| tig0024203 | CDS | 44608 | 44674 | 44608 | ID=Msa1415370-mRNA-1:cds;Parent=Msa1415370-mRNA-1 |
| tig0024203 | CDS | 44409 | 44528 | 44409 | ID=Msa1415370-mRNA-1:cds;Parent=Msa1415370-mRNA-1 |
| tig0024203 | three_prime_UTR | 44036 | 44408 | 44036 | ID=Msa1415370-mRNA-1:three_prime_utr;Parent=Msa1415370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
