Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526960 | XP_003626081.1 | 96.970 | 429 | 13 | 0 | 1 | 429 | 1 | 429 | 0.0 | 854 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526960 | sp|Q7T0X5|CHMP7_XENLA | 25.806 | 372 | 244 | 11 | 14 | 363 | 9 | 370 | 1.80e-20 | 96.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526960 | G7KUN7 | 96.970 | 429 | 13 | 0 | 1 | 429 | 1 | 429 | 0.0 | 854 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0526960 | Msa1127750 | 0.808571 | 2.900931e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526960 | MtrunA17_Chr7g0270881 | 96.970 | 429 | 13 | 0 | 1 | 429 | 1 | 429 | 0.0 | 854 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526960 | AT3G62080.1 | 59.184 | 343 | 139 | 1 | 5 | 346 | 6 | 348 | 6.87e-151 | 435 |
| Msa0526960 | AT3G62080.2 | 59.184 | 343 | 139 | 1 | 5 | 346 | 45 | 387 | 1.79e-150 | 435 |
Find 109 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTTAACTCATTGTAATT+AGG | 0.185814 | 3_4:+81118306 | Msa0526960:three_prime_UTR |
| ATTTCTCCAGAAAATGAAAT+TGG | 0.195539 | 3_4:-81114275 | None:intergenic |
| TTGTTAACTCATTGTAATTA+GGG | 0.240114 | 3_4:+81118307 | Msa0526960:three_prime_UTR |
| TAGTCTTCAATATTATTTAA+AGG | 0.250144 | 3_4:-81114102 | None:intergenic |
| TTATGAGGAGAAAATGAAAA+TGG | 0.255298 | 3_4:-81114318 | None:intergenic |
| AGGTCCTTTGAGCACACTTT+TGG | 0.261254 | 3_4:+81118372 | Msa0526960:three_prime_UTR |
| AAGAGAAGAAAAGGGGAAAA+TGG | 0.265624 | 3_4:+81114144 | Msa0526960:exon |
| CTGAGCCGTGGAAGCACCTT+GGG | 0.290935 | 3_4:-81118351 | None:intergenic |
| CAACCTTAAGCATAGGAATT+AGG | 0.305336 | 3_4:-81115165 | None:intergenic |
| CTCTCAGCAGCAGCATTATC+TGG | 0.321416 | 3_4:+81116711 | Msa0526960:CDS |
| GATTCTTCAGCCATGATATC+TGG | 0.338412 | 3_4:-81115136 | None:intergenic |
| GCAGTGGCTTCTCTACATTC+TGG | 0.347417 | 3_4:+81117434 | Msa0526960:CDS |
| CAAAGAGCAAAGAGAAGAAA+AGG | 0.349207 | 3_4:+81114135 | Msa0526960:five_prime_UTR |
| AGTCTTCAATATTATTTAAA+GGG | 0.354221 | 3_4:-81114101 | None:intergenic |
| TGAAGAAGGAACTGCAACTT+TGG | 0.366943 | 3_4:+81118027 | Msa0526960:CDS |
| CATTACGATGAAGAAATTTC+AGG | 0.370723 | 3_4:+81116299 | Msa0526960:CDS |
| GGTCCTAATTCCTATGCTTA+AGG | 0.379944 | 3_4:+81115162 | Msa0526960:CDS |
| TTTCTTCATCGTAATGATAC+AGG | 0.382998 | 3_4:-81116292 | None:intergenic |
| TTCTCTCACTTTCAGACTTA+CGG | 0.391970 | 3_4:-81118173 | None:intergenic |
| GTGATGTTCTGTACTTGATT+TGG | 0.400685 | 3_4:+81116751 | Msa0526960:CDS |
| TCTCCTCATAAAACCTTCTC+AGG | 0.418140 | 3_4:+81114330 | Msa0526960:CDS |
| CCTCTACAAATTCGTTCTTA+AGG | 0.421500 | 3_4:-81116401 | None:intergenic |
| TCTGCGAATCAATGCTCTCT+TGG | 0.434409 | 3_4:-81117766 | None:intergenic |
| GATAACTTCGTCGTTCCAAT+CGG | 0.436175 | 3_4:-81114203 | None:intergenic |
| TTTCTCCAGAAAATGAAATT+GGG | 0.437602 | 3_4:-81114274 | None:intergenic |
| TATGAGGAGAAAATGAAAAT+GGG | 0.446251 | 3_4:-81114317 | None:intergenic |
| CAGTGGCTTCTCTACATTCT+GGG | 0.449968 | 3_4:+81117435 | Msa0526960:CDS |
| AAAGAGCAAAGAGAAGAAAA+GGG | 0.451481 | 3_4:+81114136 | Msa0526960:five_prime_UTR |
| GTTTCTGAAGCTATGCAGAT+TGG | 0.453095 | 3_4:+81117680 | Msa0526960:CDS |
| AGCTGGTCTGATTATTAAGT+TGG | 0.457903 | 3_4:-81115110 | None:intergenic |
| AACAATTAGATGTGATTGAC+AGG | 0.458580 | 3_4:+81116793 | Msa0526960:CDS |
| CCAAGGTGCTTCCACGGCTC+AGG | 0.467021 | 3_4:+81118352 | Msa0526960:three_prime_UTR |
| GGTTTACATTGCTAAATTTG+CGG | 0.468527 | 3_4:-81118152 | None:intergenic |
| GCCATGATATCTGGTGTAGC+TGG | 0.492519 | 3_4:-81115127 | None:intergenic |
| GCACCTTGGGGTGCCAAATG+AGG | 0.492611 | 3_4:-81118338 | None:intergenic |
| TTCGCAGAAGGAAGTTGAAA+AGG | 0.493419 | 3_4:+81117781 | Msa0526960:CDS |
| AACATCTATCAGAAAGTCAC+TGG | 0.493712 | 3_4:+81116262 | Msa0526960:CDS |
| AACTTTCAGACCGTCCAGTC+GGG | 0.495099 | 3_4:+81118089 | Msa0526960:CDS |
| GGCACCCCAAGGTGCTTCCA+CGG | 0.496578 | 3_4:+81118346 | Msa0526960:three_prime_UTR |
| AATGAAATTGGGTTGCCAAT+CGG | 0.497801 | 3_4:-81114263 | None:intergenic |
| GTAATGTTGAGGTATCTGTC+AGG | 0.502229 | 3_4:+81116351 | Msa0526960:CDS |
| TTTGTGTATCGACGATGTAC+TGG | 0.503242 | 3_4:+81114473 | Msa0526960:CDS |
| AGTTGCAGTTCCTTCTTCAC+TGG | 0.503366 | 3_4:-81118023 | None:intergenic |
| ATAACTTCGTCGTTCCAATC+GGG | 0.505272 | 3_4:-81114202 | None:intergenic |
| CCTGAGCCGTGGAAGCACCT+TGG | 0.507046 | 3_4:-81118352 | None:intergenic |
| TTGCCAATCGGATCTTTGAC+CGG | 0.507149 | 3_4:-81114251 | None:intergenic |
| AGAGCTGGCTCTTGAGAAAG+AGG | 0.509308 | 3_4:+81117970 | Msa0526960:CDS |
| ACCAGCTACACCAGATATCA+TGG | 0.510570 | 3_4:+81115126 | Msa0526960:CDS |
| CTAATTATCGAGTCTCTAGT+AGG | 0.511665 | 3_4:+81118397 | Msa0526960:three_prime_UTR |
| AAGAAATTTCAGGAGATATG+TGG | 0.514245 | 3_4:+81116309 | Msa0526960:CDS |
| GTACATCGTCGATACACAAA+GGG | 0.517215 | 3_4:-81114470 | None:intergenic |
| AAGACAACTACCAGTGAAGA+AGG | 0.528975 | 3_4:+81118013 | Msa0526960:CDS |
| AACATTACAGAAGCTTCATC+CGG | 0.530777 | 3_4:-81116336 | None:intergenic |
| TGGGAGAATCTTCCACTCGT+TGG | 0.534081 | 3_4:-81115070 | None:intergenic |
| TTCTTGACTTCCCGACTGGA+CGG | 0.535316 | 3_4:-81118099 | None:intergenic |
| AGCTATGCAGATTGGAGCAC+GGG | 0.538575 | 3_4:+81117688 | Msa0526960:CDS |
| AACCCTCATTTGGCACCCCA+AGG | 0.539468 | 3_4:+81118335 | Msa0526960:three_prime_UTR |
| GTGGTTCTTGACTTCCCGAC+TGG | 0.540242 | 3_4:-81118103 | None:intergenic |
| CACCTTGGGGTGCCAAATGA+GGG | 0.540899 | 3_4:-81118337 | None:intergenic |
| GTATGCAAGGGAGCTGAAGT+TGG | 0.544956 | 3_4:+81117478 | Msa0526960:CDS |
| TCAGGAGATATGTGGAGGGC+CGG | 0.546577 | 3_4:+81116317 | Msa0526960:CDS |
| GGAACAGAAAATTAGCCCTC+AGG | 0.547297 | 3_4:+81117456 | Msa0526960:CDS |
| TGTAAAAGATTTCATAGCAA+AGG | 0.558892 | 3_4:+81114174 | Msa0526960:CDS |
| TGATGCAGAGTCAACGAAAA+CGG | 0.560271 | 3_4:+81117568 | Msa0526960:CDS |
| ACCACTCATGCGGCATCTGA+AGG | 0.561230 | 3_4:+81118121 | Msa0526960:CDS |
| AGAACTCGACTTTGAATGGA+GGG | 0.569869 | 3_4:-81118472 | None:intergenic |
| TAGCAAAGGAAGTTCCCGAT+TGG | 0.572493 | 3_4:+81114188 | Msa0526960:CDS |
| TTTCCGGTCAAAGATCCGAT+TGG | 0.575498 | 3_4:+81114248 | Msa0526960:CDS |
| AATTAGCCCTCAGGTATGCA+AGG | 0.576840 | 3_4:+81117465 | Msa0526960:CDS |
| CAGTCTCTAATGTATAATGA+AGG | 0.585812 | 3_4:+81115016 | Msa0526960:intron |
| TTGCTAACAACCTTAAGCAT+AGG | 0.586456 | 3_4:-81115172 | None:intergenic |
| TGCTCAAAGGACCTGAGCCG+TGG | 0.588717 | 3_4:-81118363 | None:intergenic |
| CTAGTAGGTAGTACCTGAGA+AGG | 0.589294 | 3_4:-81114343 | None:intergenic |
| AATGATTGGTTTAATCGAGG+AGG | 0.590003 | 3_4:+81114441 | Msa0526960:CDS |
| CGAACTTGAAGAGTTAGAGC+TGG | 0.590091 | 3_4:+81117955 | Msa0526960:CDS |
| AAGAGCAAAGAGAAGAAAAG+GGG | 0.595766 | 3_4:+81114137 | Msa0526960:five_prime_UTR |
| AAGCTATGCAGATTGGAGCA+CGG | 0.597275 | 3_4:+81117687 | Msa0526960:CDS |
| TTGAGGTATCTGTCAGGGTG+TGG | 0.599641 | 3_4:+81116357 | Msa0526960:CDS |
| TCGTTGATATCTGTGTATGA+TGG | 0.601282 | 3_4:-81117917 | None:intergenic |
| CAAAGAAAATAAGATAAGCG+TGG | 0.607783 | 3_4:+81117715 | Msa0526960:CDS |
| TCCTTCAGATGCCGCATGAG+TGG | 0.609145 | 3_4:-81118122 | None:intergenic |
| AAACTTTCAGACCGTCCAGT+CGG | 0.612549 | 3_4:+81118088 | Msa0526960:CDS |
| GAGGGAGACGCTCATTTGAG+AGG | 0.617408 | 3_4:-81118454 | None:intergenic |
| AAGAACTCGACTTTGAATGG+AGG | 0.618714 | 3_4:-81118473 | None:intergenic |
| TAATGTTGAGGTATCTGTCA+GGG | 0.619571 | 3_4:+81116352 | Msa0526960:CDS |
| ATGAAGCTTCTGTAATGTTG+AGG | 0.620445 | 3_4:+81116340 | Msa0526960:CDS |
| AGTCCCAAAAGTGTGCTCAA+AGG | 0.620636 | 3_4:-81118376 | None:intergenic |
| AGAGAGCATTGATTCGCAGA+AGG | 0.621110 | 3_4:+81117769 | Msa0526960:CDS |
| TCAGCTCCCTTGCATACCTG+AGG | 0.625490 | 3_4:-81117472 | None:intergenic |
| GAAGGTGACATCACAAGACG+TGG | 0.627827 | 3_4:+81115034 | Msa0526960:CDS |
| CCTTAAGAACGAATTTGTAG+AGG | 0.628302 | 3_4:+81116401 | Msa0526960:CDS |
| AAGGAAGTTGAAAAGGCACT+AGG | 0.631815 | 3_4:+81117788 | Msa0526960:CDS |
| CAGCTCCCTTGCATACCTGA+GGG | 0.632956 | 3_4:-81117471 | None:intergenic |
| AAATTTCAGGAGATATGTGG+AGG | 0.635846 | 3_4:+81116312 | Msa0526960:CDS |
| AGTACATCGTCGATACACAA+AGG | 0.640214 | 3_4:-81114471 | None:intergenic |
| AGAGGCTCAAGTTGATACAC+CGG | 0.640753 | 3_4:+81117988 | Msa0526960:CDS |
| AAAAGCTTTGAATCGAGCAA+CGG | 0.643739 | 3_4:-81114227 | None:intergenic |
| TATCATGGCTGAAGAATCTG+TGG | 0.645941 | 3_4:+81115141 | Msa0526960:CDS |
| GATCTTGTTGATCCAACGAG+TGG | 0.652189 | 3_4:+81115058 | Msa0526960:CDS |
| AATAGAGTAGAGGAAGTACA+TGG | 0.652329 | 3_4:+81117536 | Msa0526960:CDS |
| GAAGTCAAGAACCACTCATG+CGG | 0.652468 | 3_4:+81118111 | Msa0526960:CDS |
| ATTAGCCCTCAGGTATGCAA+GGG | 0.658310 | 3_4:+81117466 | Msa0526960:CDS |
| TAGGTCAAGAAAATCAGCAG+TGG | 0.659396 | 3_4:+81117418 | Msa0526960:intron |
| TGAGCCGTGGAAGCACCTTG+GGG | 0.664588 | 3_4:-81118350 | None:intergenic |
| TGGAACAGCACAGTATCTGT+CGG | 0.667033 | 3_4:+81116377 | Msa0526960:CDS |
| AAGGTGACATCACAAGACGT+GGG | 0.668042 | 3_4:+81115035 | Msa0526960:CDS |
| AATTTCAGGAGATATGTGGA+GGG | 0.688878 | 3_4:+81116313 | Msa0526960:CDS |
| AGGTGACATCACAAGACGTG+GGG | 0.712242 | 3_4:+81115036 | Msa0526960:CDS |
| TACATCGTCGATACACAAAG+GGG | 0.757838 | 3_4:-81114469 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAACAAATTTC+AGG | - | chr3_4:81114413-81114432 | None:intergenic | 10.0% |
| !!! | GAAATTTGTTTTTTTTTTTT+AGG | + | chr3_4:81114413-81114432 | Msa0526960:intron | 10.0% |
| !! | ATAGTAATAATTAGAAAAAA+TGG | - | chr3_4:81115688-81115707 | None:intergenic | 10.0% |
| !!! | CATTCATTTATTTATTTTTT+TGG | + | chr3_4:81117880-81117899 | Msa0526960:intron | 10.0% |
| !! | ACATCTAAAAAAAATTTATA+TGG | + | chr3_4:81118420-81118439 | Msa0526960:three_prime_UTR | 10.0% |
| !! | CATCTAAAAAAAATTTATAT+GGG | + | chr3_4:81118421-81118440 | Msa0526960:three_prime_UTR | 10.0% |
| !! | ATCTAAAAAAAATTTATATG+GGG | + | chr3_4:81118422-81118441 | Msa0526960:three_prime_UTR | 10.0% |
| !! | AGTCTTCAATATTATTTAAA+GGG | - | chr3_4:81114104-81114123 | None:intergenic | 15.0% |
| !! | TAGTCTTCAATATTATTTAA+AGG | - | chr3_4:81114105-81114124 | None:intergenic | 15.0% |
| !!! | TTTTTTAGGTTAAAAATGAT+TGG | + | chr3_4:81114427-81114446 | Msa0526960:intron | 15.0% |
| !! | TTTCTAATTATTACTATTGT+AGG | + | chr3_4:81115691-81115710 | Msa0526960:intron | 15.0% |
| !!! | TACTTTTAAAAATTATTCTG+CGG | + | chr3_4:81115941-81115960 | Msa0526960:intron | 15.0% |
| !! | TTTATTATCTTATACATTTC+AGG | + | chr3_4:81115967-81115986 | Msa0526960:intron | 15.0% |
| !! | ACAGAATATAATAAACTTAA+TGG | + | chr3_4:81117092-81117111 | Msa0526960:intron | 15.0% |
| !! | TCTAAAAAAAATTTATATGG+GGG | + | chr3_4:81118423-81118442 | Msa0526960:three_prime_UTR | 15.0% |
| !! | TGAAAATGAAAAGAAAAAGA+GGG | - | chr3_4:81114384-81114403 | None:intergenic | 20.0% |
| !! | ATGAAAATGAAAAGAAAAAG+AGG | - | chr3_4:81114385-81114404 | None:intergenic | 20.0% |
| !!! | TTTTTTAACAAGTTTAATGG+AGG | - | chr3_4:81114823-81114842 | None:intergenic | 20.0% |
| !!! | CAGTTTTTTAACAAGTTTAA+TGG | - | chr3_4:81114826-81114845 | None:intergenic | 20.0% |
| !! | AACAAAAACAAAAGAAGAAA+AGG | - | chr3_4:81115214-81115233 | None:intergenic | 20.0% |
| !! | ATTTACCAACATATATTTCA+TGG | + | chr3_4:81115304-81115323 | Msa0526960:intron | 20.0% |
| !! | TCAAAATTGACCAATTATTT+GGG | - | chr3_4:81115584-81115603 | None:intergenic | 20.0% |
| !! | TTCAAAATTGACCAATTATT+TGG | - | chr3_4:81115585-81115604 | None:intergenic | 20.0% |
| !!! | TCATAGTTTGGAATTATAAT+AGG | - | chr3_4:81115615-81115634 | None:intergenic | 20.0% |
| !!! | ACTTTTAAAAATTATTCTGC+GGG | + | chr3_4:81115942-81115961 | Msa0526960:intron | 20.0% |
| !! | TAGAATTACTAAACAATTTG+AGG | - | chr3_4:81116010-81116029 | None:intergenic | 20.0% |
| !! | TGTTTAGTATTCTATCATTT+AGG | + | chr3_4:81116469-81116488 | Msa0526960:intron | 20.0% |
| !! | TCTTCAAATATATCACATTT+AGG | + | chr3_4:81116502-81116521 | Msa0526960:intron | 20.0% |
| !!! | TTATCCATTTTTAATTTGAC+AGG | + | chr3_4:81116674-81116693 | Msa0526960:intron | 20.0% |
| !!! | TATCCATTTTTAATTTGACA+GGG | + | chr3_4:81116675-81116694 | Msa0526960:intron | 20.0% |
| !! | TAACATATAATAATCTACTG+TGG | - | chr3_4:81116962-81116981 | None:intergenic | 20.0% |
| !! | CTAAATAGGATAAATATGTT+AGG | - | chr3_4:81117401-81117420 | None:intergenic | 20.0% |
| !! | CTAACATATTTATCCTATTT+AGG | + | chr3_4:81117399-81117418 | Msa0526960:intron | 20.0% |
| !!! | TTTTGCTGAAATCAATAATT+AGG | + | chr3_4:81117842-81117861 | Msa0526960:intron | 20.0% |
| !!! | AAACATATTTTAAGATCTTG+TGG | - | chr3_4:81118238-81118257 | None:intergenic | 20.0% |
| !! | TTTGTTAACTCATTGTAATT+AGG | + | chr3_4:81118306-81118325 | Msa0526960:three_prime_UTR | 20.0% |
| !! | TTGTTAACTCATTGTAATTA+GGG | + | chr3_4:81118307-81118326 | Msa0526960:three_prime_UTR | 20.0% |
| ! | TGTAAAAGATTTCATAGCAA+AGG | + | chr3_4:81114174-81114193 | Msa0526960:CDS | 25.0% |
| ! | TTTCTCCAGAAAATGAAATT+GGG | - | chr3_4:81114277-81114296 | None:intergenic | 25.0% |
| ! | ATTTCTCCAGAAAATGAAAT+TGG | - | chr3_4:81114278-81114297 | None:intergenic | 25.0% |
| ! | TATGAGGAGAAAATGAAAAT+GGG | - | chr3_4:81114320-81114339 | None:intergenic | 25.0% |
| ! | TTATGAGGAGAAAATGAAAA+TGG | - | chr3_4:81114321-81114340 | None:intergenic | 25.0% |
| ! | AAAAGAAAAAGAGGGAAAAT+TGG | - | chr3_4:81114376-81114395 | None:intergenic | 25.0% |
| !!! | AAAAATGATTGGTTTAATCG+AGG | + | chr3_4:81114438-81114457 | Msa0526960:CDS | 25.0% |
| ! | TAAAGCAAAGAAGTGAATTT+GGG | - | chr3_4:81114588-81114607 | None:intergenic | 25.0% |
| ! | ATAAAGCAAAGAAGTGAATT+TGG | - | chr3_4:81114589-81114608 | None:intergenic | 25.0% |
| ! | AATTCACTTCTTTGCTTTAT+AGG | + | chr3_4:81114589-81114608 | Msa0526960:intron | 25.0% |
| !! | AAACTACTAGTTTACACTAA+CGG | - | chr3_4:81114710-81114729 | None:intergenic | 25.0% |
| !! | TGTAAACTAGTAGTTTTTGT+TGG | + | chr3_4:81114714-81114733 | Msa0526960:intron | 25.0% |
| ! | TGTTGGAATCAACTATTTAA+CGG | + | chr3_4:81114731-81114750 | Msa0526960:intron | 25.0% |
| ! | TTGAATTGTCATTGAATGTT+TGG | + | chr3_4:81114769-81114788 | Msa0526960:intron | 25.0% |
| ! | CAAAAAACAAAACACGAAAA+GGG | - | chr3_4:81114975-81114994 | None:intergenic | 25.0% |
| ! | ACAAAAAACAAAACACGAAA+AGG | - | chr3_4:81114976-81114995 | None:intergenic | 25.0% |
| ! | GCATGCATAAAATAAACAAA+AGG | - | chr3_4:81115251-81115270 | None:intergenic | 25.0% |
| ! | ATTTCAAATGAACTCTACAA+GGG | - | chr3_4:81115339-81115358 | None:intergenic | 25.0% |
| ! | AATTTCAAATGAACTCTACA+AGG | - | chr3_4:81115340-81115359 | None:intergenic | 25.0% |
| !!! | GAGTTCATTTGAAATTTTCA+TGG | + | chr3_4:81115344-81115363 | Msa0526960:intron | 25.0% |
| !! | TTGAAATTTTCATGGAAGAA+TGG | + | chr3_4:81115352-81115371 | Msa0526960:intron | 25.0% |
| !! | TTGTTTGATAACTTGCAATT+TGG | + | chr3_4:81115441-81115460 | Msa0526960:intron | 25.0% |
| ! | CAAAATTGACCAATTATTTG+GGG | - | chr3_4:81115583-81115602 | None:intergenic | 25.0% |
| !! | TACATTTCAGGTATTTAAGT+TGG | + | chr3_4:81115979-81115998 | Msa0526960:intron | 25.0% |
| ! | TTTAGTAATTCTACAGCATA+AGG | + | chr3_4:81116017-81116036 | Msa0526960:intron | 25.0% |
| !! | ATTTCTGTTTCTTCATATGT+AGG | + | chr3_4:81116218-81116237 | Msa0526960:intron | 25.0% |
| ! | ATGATAGAATACTAAACAAC+TGG | - | chr3_4:81116467-81116486 | None:intergenic | 25.0% |
| ! | CAAATAACTTCTAACATTTC+TGG | + | chr3_4:81116543-81116562 | Msa0526960:intron | 25.0% |
| !!! | TTCTAACATTTCTGGTAAAT+TGG | + | chr3_4:81116551-81116570 | Msa0526960:intron | 25.0% |
| ! | TACTTGTATATGTATCATGA+AGG | + | chr3_4:81116847-81116866 | Msa0526960:intron | 25.0% |
| !!! | AAGTCGTTTTAACACATAAA+AGG | + | chr3_4:81117021-81117040 | Msa0526960:intron | 25.0% |
| !!! | TGAGTAATTGTGTTTTGAAT+TGG | - | chr3_4:81117047-81117066 | None:intergenic | 25.0% |
| ! | AGTATAACATCATATGAATG+AGG | - | chr3_4:81117123-81117142 | None:intergenic | 25.0% |
| ! | TATCACCAAATCTTAATTAG+TGG | - | chr3_4:81117166-81117185 | None:intergenic | 25.0% |
| ! | TCAAATTGATCAGTTTACAT+TGG | + | chr3_4:81117610-81117629 | Msa0526960:intron | 25.0% |
| ! | AAAAAATTTATATGGGGGTT+AGG | + | chr3_4:81118428-81118447 | Msa0526960:three_prime_UTR | 25.0% |
| AAAGAGCAAAGAGAAGAAAA+GGG | + | chr3_4:81114136-81114155 | Msa0526960:five_prime_UTR | 30.0% | |
| AAAATTGGAAAAACCCTAGT+AGG | - | chr3_4:81114361-81114380 | None:intergenic | 30.0% | |
| CAATTACATACATTTCATGC+TGG | + | chr3_4:81114545-81114564 | Msa0526960:intron | 30.0% | |
| ! | AGAGGACTAAGTCTATATTT+TGG | + | chr3_4:81114634-81114653 | Msa0526960:intron | 30.0% |
| TCAACTATTTAACGGTTATG+TGG | + | chr3_4:81114739-81114758 | Msa0526960:intron | 30.0% | |
| ! | GTAAAATAGTTCTACACTGA+CGG | + | chr3_4:81114793-81114812 | Msa0526960:intron | 30.0% |
| TAAAAAACTGACAGAATGAC+AGG | + | chr3_4:81114836-81114855 | Msa0526960:intron | 30.0% | |
| CTTCATTATACATTAGAGAC+TGG | - | chr3_4:81115018-81115037 | None:intergenic | 30.0% | |
| CAGTCTCTAATGTATAATGA+AGG | + | chr3_4:81115016-81115035 | Msa0526960:intron | 30.0% | |
| AGAAAAGGTCTCGAAATAAA+TGG | - | chr3_4:81115199-81115218 | None:intergenic | 30.0% | |
| !! | TTATTTTATGCATGCGTGTT+TGG | + | chr3_4:81115256-81115275 | Msa0526960:intron | 30.0% |
| ATCTGAATTACAAATGCACA+AGG | - | chr3_4:81115286-81115305 | None:intergenic | 30.0% | |
| AACACGTAAGAATATTGACA+TGG | - | chr3_4:81115380-81115399 | None:intergenic | 30.0% | |
| TATCTGAAAGTTGTAGGTAA+GGG | - | chr3_4:81115530-81115549 | None:intergenic | 30.0% | |
| ACTTTCTATCTGAAAGTTGT+AGG | - | chr3_4:81115536-81115555 | None:intergenic | 30.0% | |
| !! | TGCAAACTTAATTAACTTGC+TGG | - | chr3_4:81116125-81116144 | None:intergenic | 30.0% |
| TACTCAAACAAAGGAAAAGT+TGG | - | chr3_4:81116164-81116183 | None:intergenic | 30.0% | |
| TTTCTTCATCGTAATGATAC+AGG | - | chr3_4:81116295-81116314 | None:intergenic | 30.0% | |
| CATTACGATGAAGAAATTTC+AGG | + | chr3_4:81116299-81116318 | Msa0526960:CDS | 30.0% | |
| AAGAAATTTCAGGAGATATG+TGG | + | chr3_4:81116309-81116328 | Msa0526960:CDS | 30.0% | |
| TGATAATCGTTAATACTGAC+AGG | + | chr3_4:81116583-81116602 | Msa0526960:intron | 30.0% | |
| ACACCCTGTCAAATTAAAAA+TGG | - | chr3_4:81116681-81116700 | None:intergenic | 30.0% | |
| AACAATTAGATGTGATTGAC+AGG | + | chr3_4:81116793-81116812 | Msa0526960:CDS | 30.0% | |
| GAAAATGTTTCAGTTTATGG+AGG | - | chr3_4:81116928-81116947 | None:intergenic | 30.0% | |
| AGGGAAAATGTTTCAGTTTA+TGG | - | chr3_4:81116931-81116950 | None:intergenic | 30.0% | |
| ATCTACTGTGGAATAAGAAA+GGG | - | chr3_4:81116950-81116969 | None:intergenic | 30.0% | |
| AATCTACTGTGGAATAAGAA+AGG | - | chr3_4:81116951-81116970 | None:intergenic | 30.0% | |
| ATTATATGTTATGCAAGTGC+CGG | + | chr3_4:81116971-81116990 | Msa0526960:intron | 30.0% | |
| TAACCAAAATCCTACTAAGA+GGG | - | chr3_4:81117000-81117019 | None:intergenic | 30.0% | |
| ATAACCAAAATCCTACTAAG+AGG | - | chr3_4:81117001-81117020 | None:intergenic | 30.0% | |
| !! | TTAAGATTTGGTGATAGTGT+TGG | + | chr3_4:81117170-81117189 | Msa0526960:intron | 30.0% |
| TAGTAAACTCATGTTCTTAG+AGG | - | chr3_4:81117210-81117229 | None:intergenic | 30.0% | |
| TTTACAAATTTATTCACGCG+AGG | + | chr3_4:81117259-81117278 | Msa0526960:intron | 30.0% | |
| ! | CTGATTTTCTTGACCTAAAT+AGG | - | chr3_4:81117415-81117434 | None:intergenic | 30.0% |
| ! | TGAACATTTTTCTCTACTCT+GGG | - | chr3_4:81117507-81117526 | None:intergenic | 30.0% |
| ! | ATGAACATTTTTCTCTACTC+TGG | - | chr3_4:81117508-81117527 | None:intergenic | 30.0% |
| !! | ATCACTTTTGAATAGAGTAG+AGG | + | chr3_4:81117526-81117545 | Msa0526960:CDS | 30.0% |
| TGCTAACAAAGAATGATTAC+TGG | - | chr3_4:81117659-81117678 | None:intergenic | 30.0% | |
| AGTAATCATTCTTTGTTAGC+AGG | + | chr3_4:81117658-81117677 | Msa0526960:intron | 30.0% | |
| CAAAGAAAATAAGATAAGCG+TGG | + | chr3_4:81117715-81117734 | Msa0526960:CDS | 30.0% | |
| GGTTTACATTGCTAAATTTG+CGG | - | chr3_4:81118155-81118174 | None:intergenic | 30.0% | |
| CAAAGAGCAAAGAGAAGAAA+AGG | + | chr3_4:81114135-81114154 | Msa0526960:five_prime_UTR | 35.0% | |
| AAGAGCAAAGAGAAGAAAAG+GGG | + | chr3_4:81114137-81114156 | Msa0526960:five_prime_UTR | 35.0% | |
| AAGAGAAGAAAAGGGGAAAA+TGG | + | chr3_4:81114144-81114163 | Msa0526960:exon | 35.0% | |
| !! | AAAAGCTTTGAATCGAGCAA+CGG | - | chr3_4:81114230-81114249 | None:intergenic | 35.0% |
| ! | AATGAAATTGGGTTGCCAAT+CGG | - | chr3_4:81114266-81114285 | None:intergenic | 35.0% |
| !! | AATGATTGGTTTAATCGAGG+AGG | + | chr3_4:81114441-81114460 | Msa0526960:CDS | 35.0% |
| TTTGCTTTATAGGCTGTGTT+TGG | + | chr3_4:81114599-81114618 | Msa0526960:intron | 35.0% | |
| ! | TTTGAATGCAGCATTTTGGA+GGG | - | chr3_4:81114948-81114967 | None:intergenic | 35.0% |
| ! | CATGTTTGAATGCAGCATTT+TGG | - | chr3_4:81114952-81114971 | None:intergenic | 35.0% |
| !!! | GGTCATTTTTCTGACTAGTT+GGG | - | chr3_4:81115092-81115111 | None:intergenic | 35.0% |
| !!! | TGGTCATTTTTCTGACTAGT+TGG | - | chr3_4:81115093-81115112 | None:intergenic | 35.0% |
| ! | AGCTGGTCTGATTATTAAGT+TGG | - | chr3_4:81115113-81115132 | None:intergenic | 35.0% |
| CAACCTTAAGCATAGGAATT+AGG | - | chr3_4:81115168-81115187 | None:intergenic | 35.0% | |
| TTGCTAACAACCTTAAGCAT+AGG | - | chr3_4:81115175-81115194 | None:intergenic | 35.0% | |
| CAACATATATTTCATGGTCC+CGG | + | chr3_4:81115310-81115329 | Msa0526960:intron | 35.0% | |
| CTATCTGAAAGTTGTAGGTA+AGG | - | chr3_4:81115531-81115550 | None:intergenic | 35.0% | |
| GATAGTACACCCCAAATAAT+TGG | + | chr3_4:81115571-81115590 | Msa0526960:intron | 35.0% | |
| AGTGTTTGTGCTTCATAGTT+TGG | - | chr3_4:81115627-81115646 | None:intergenic | 35.0% | |
| TGAAGCACAAACACTTCATA+TGG | + | chr3_4:81115632-81115651 | Msa0526960:intron | 35.0% | |
| TATCTGTGTTAGTGCTTCAT+AGG | + | chr3_4:81115727-81115746 | Msa0526960:intron | 35.0% | |
| TTCATAGGTTTCATGTGAAC+TGG | + | chr3_4:81115742-81115761 | Msa0526960:intron | 35.0% | |
| !!! | TTACCCTGTTTTTACACAAG+AGG | - | chr3_4:81115820-81115839 | None:intergenic | 35.0% |
| TCTTGTGTAAAAACAGGGTA+AGG | + | chr3_4:81115819-81115838 | Msa0526960:intron | 35.0% | |
| AACCCTGTGCTTCAAATAAA+GGG | - | chr3_4:81115919-81115938 | None:intergenic | 35.0% | |
| AGCATAAGGATTACGTACAT+CGG | + | chr3_4:81116031-81116050 | Msa0526960:intron | 35.0% | |
| TGCATGAAAGCAAACATGAA+CGG | - | chr3_4:81116093-81116112 | None:intergenic | 35.0% | |
| TAATTAAGTTTGCAGCTTGC+AGG | + | chr3_4:81116131-81116150 | Msa0526960:intron | 35.0% | |
| CATCTAGCATACTCAAACAA+AGG | - | chr3_4:81116173-81116192 | None:intergenic | 35.0% | |
| AACATCTATCAGAAAGTCAC+TGG | + | chr3_4:81116262-81116281 | Msa0526960:CDS | 35.0% | |
| AAATTTCAGGAGATATGTGG+AGG | + | chr3_4:81116312-81116331 | Msa0526960:CDS | 35.0% | |
| AATTTCAGGAGATATGTGGA+GGG | + | chr3_4:81116313-81116332 | Msa0526960:CDS | 35.0% | |
| AACATTACAGAAGCTTCATC+CGG | - | chr3_4:81116339-81116358 | None:intergenic | 35.0% | |
| ATGAAGCTTCTGTAATGTTG+AGG | + | chr3_4:81116340-81116359 | Msa0526960:CDS | 35.0% | |
| ! | TAATGTTGAGGTATCTGTCA+GGG | + | chr3_4:81116352-81116371 | Msa0526960:CDS | 35.0% |
| CCTCTACAAATTCGTTCTTA+AGG | - | chr3_4:81116404-81116423 | None:intergenic | 35.0% | |
| CCTTAAGAACGAATTTGTAG+AGG | + | chr3_4:81116401-81116420 | Msa0526960:CDS | 35.0% | |
| TATCACATTTAGGTAGCAGT+TGG | + | chr3_4:81116512-81116531 | Msa0526960:intron | 35.0% | |
| CAATGATAATTCCTCCCAAA+GGG | - | chr3_4:81116615-81116634 | None:intergenic | 35.0% | |
| TCAATGATAATTCCTCCCAA+AGG | - | chr3_4:81116616-81116635 | None:intergenic | 35.0% | |
| !! | ACTGATTTGATTCTTATGCC+TGG | + | chr3_4:81116641-81116660 | Msa0526960:intron | 35.0% |
| GTGATGTTCTGTACTTGATT+TGG | + | chr3_4:81116751-81116770 | Msa0526960:CDS | 35.0% | |
| CGTGACCACTAATTAAGATT+TGG | + | chr3_4:81117158-81117177 | Msa0526960:intron | 35.0% | |
| ! | AATAGAGTAGAGGAAGTACA+TGG | + | chr3_4:81117536-81117555 | Msa0526960:CDS | 35.0% |
| TCGTTGATATCTGTGTATGA+TGG | - | chr3_4:81117920-81117939 | None:intergenic | 35.0% | |
| TTCTCTCACTTTCAGACTTA+CGG | - | chr3_4:81118176-81118195 | None:intergenic | 35.0% | |
| ! | TAGGGTTTTTAACCCTCATT+TGG | + | chr3_4:81118325-81118344 | Msa0526960:three_prime_UTR | 35.0% |
| CTAATTATCGAGTCTCTAGT+AGG | + | chr3_4:81118397-81118416 | Msa0526960:three_prime_UTR | 35.0% | |
| ATAACTTCGTCGTTCCAATC+GGG | - | chr3_4:81114205-81114224 | None:intergenic | 40.0% | |
| GATAACTTCGTCGTTCCAAT+CGG | - | chr3_4:81114206-81114225 | None:intergenic | 40.0% | |
| !! | GCTCGATTCAAAGCTTTTTC+CGG | + | chr3_4:81114232-81114251 | Msa0526960:CDS | 40.0% |
| ! | GGCAACCCAATTTCATTTTC+TGG | + | chr3_4:81114269-81114288 | Msa0526960:CDS | 40.0% |
| TCTCCTCATAAAACCTTCTC+AGG | + | chr3_4:81114330-81114349 | Msa0526960:CDS | 40.0% | |
| !! | GTACCTGAGAAGGTTTTATG+AGG | - | chr3_4:81114336-81114355 | None:intergenic | 40.0% |
| TTCTCAGGTACTACCTACTA+GGG | + | chr3_4:81114345-81114364 | Msa0526960:intron | 40.0% | |
| TACATCGTCGATACACAAAG+GGG | - | chr3_4:81114472-81114491 | None:intergenic | 40.0% | |
| GTACATCGTCGATACACAAA+GGG | - | chr3_4:81114473-81114492 | None:intergenic | 40.0% | |
| AGTACATCGTCGATACACAA+AGG | - | chr3_4:81114474-81114493 | None:intergenic | 40.0% | |
| ! | TTTGTGTATCGACGATGTAC+TGG | + | chr3_4:81114473-81114492 | Msa0526960:CDS | 40.0% |
| !!! | GTTTGGCTCTAGTGTTTTAG+AGG | + | chr3_4:81114616-81114635 | Msa0526960:intron | 40.0% |
| AAACTGACAGAATGACAGGA+TGG | + | chr3_4:81114840-81114859 | Msa0526960:intron | 40.0% | |
| ! | GTTTGAATGCAGCATTTTGG+AGG | - | chr3_4:81114949-81114968 | None:intergenic | 40.0% |
| GATTCTTCAGCCATGATATC+TGG | - | chr3_4:81115139-81115158 | None:intergenic | 40.0% | |
| TATCATGGCTGAAGAATCTG+TGG | + | chr3_4:81115141-81115160 | Msa0526960:CDS | 40.0% | |
| GGTCCTAATTCCTATGCTTA+AGG | + | chr3_4:81115162-81115181 | Msa0526960:CDS | 40.0% | |
| CGGGACCATGAAATATATGT+TGG | - | chr3_4:81115312-81115331 | None:intergenic | 40.0% | |
| TCAAATGAACTCTACAAGGG+TGG | - | chr3_4:81115336-81115355 | None:intergenic | 40.0% | |
| TTACGTGTTGTACACAGTTG+AGG | + | chr3_4:81115391-81115410 | Msa0526960:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | + | chr3_4:81115813-81115832 | Msa0526960:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | + | chr3_4:81115814-81115833 | Msa0526960:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr3_4:81115845-81115864 | Msa0526960:intron | 40.0% | |
| ! | TTGCCCTTTATTTGAAGCAC+AGG | + | chr3_4:81115913-81115932 | Msa0526960:intron | 40.0% |
| ! | TGCCCTTTATTTGAAGCACA+GGG | + | chr3_4:81115914-81115933 | Msa0526960:intron | 40.0% |
| CAACCCTGTGCTTCAAATAA+AGG | - | chr3_4:81115920-81115939 | None:intergenic | 40.0% | |
| ! | CTTTATTTGAAGCACAGGGT+TGG | + | chr3_4:81115918-81115937 | Msa0526960:intron | 40.0% |
| !!! | CGTACATCGGTTCATTTTCA+CGG | + | chr3_4:81116044-81116063 | Msa0526960:intron | 40.0% |
| ! | TTTTCACGGTGTATGATACC+TGG | + | chr3_4:81116058-81116077 | Msa0526960:intron | 40.0% |
| TGTTTGCTTTCATGCAATGC+TGG | + | chr3_4:81116097-81116116 | Msa0526960:intron | 40.0% | |
| ! | GTAATGTTGAGGTATCTGTC+AGG | + | chr3_4:81116351-81116370 | Msa0526960:CDS | 40.0% |
| ACATTTAGGTAGCAGTTGGT+GGG | + | chr3_4:81116516-81116535 | Msa0526960:intron | 40.0% | |
| ATGGATAAGACAAGCAATCC+AGG | - | chr3_4:81116662-81116681 | None:intergenic | 40.0% | |
| ! | AAGCCCTCTTAGTAGGATTT+TGG | + | chr3_4:81116994-81117013 | Msa0526960:intron | 40.0% |
| ATGTTCTTAGAGGATCACGT+GGG | - | chr3_4:81117200-81117219 | None:intergenic | 40.0% | |
| TAGGTCAAGAAAATCAGCAG+TGG | + | chr3_4:81117418-81117437 | Msa0526960:intron | 40.0% | |
| TGATGCAGAGTCAACGAAAA+CGG | + | chr3_4:81117568-81117587 | Msa0526960:CDS | 40.0% | |
| !! | GTTTCTGAAGCTATGCAGAT+TGG | + | chr3_4:81117680-81117699 | Msa0526960:CDS | 40.0% |
| TTCGCAGAAGGAAGTTGAAA+AGG | + | chr3_4:81117781-81117800 | Msa0526960:CDS | 40.0% | |
| !! | AAGGAAGTTGAAAAGGCACT+AGG | + | chr3_4:81117788-81117807 | Msa0526960:CDS | 40.0% |
| ! | TCACTGGTAGTTGTCTTTTC+CGG | - | chr3_4:81118010-81118029 | None:intergenic | 40.0% |
| AAGACAACTACCAGTGAAGA+AGG | + | chr3_4:81118013-81118032 | Msa0526960:CDS | 40.0% | |
| TGAAGAAGGAACTGCAACTT+TGG | + | chr3_4:81118027-81118046 | Msa0526960:CDS | 40.0% | |
| TAGCAAAGGAAGTTCCCGAT+TGG | + | chr3_4:81114188-81114207 | Msa0526960:CDS | 45.0% | |
| TTTCCGGTCAAAGATCCGAT+TGG | + | chr3_4:81114248-81114267 | Msa0526960:CDS | 45.0% | |
| TTGCCAATCGGATCTTTGAC+CGG | - | chr3_4:81114254-81114273 | None:intergenic | 45.0% | |
| CTAGTAGGTAGTACCTGAGA+AGG | - | chr3_4:81114346-81114365 | None:intergenic | 45.0% | |
| CTTCTCAGGTACTACCTACT+AGG | + | chr3_4:81114344-81114363 | Msa0526960:intron | 45.0% | |
| AAGGTGACATCACAAGACGT+GGG | + | chr3_4:81115035-81115054 | Msa0526960:CDS | 45.0% | |
| GATCTTGTTGATCCAACGAG+TGG | + | chr3_4:81115058-81115077 | Msa0526960:CDS | 45.0% | |
| ACCAGCTACACCAGATATCA+TGG | + | chr3_4:81115126-81115145 | Msa0526960:CDS | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr3_4:81115809-81115828 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAA+TGG | + | chr3_4:81115841-81115860 | Msa0526960:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr3_4:81115844-81115863 | Msa0526960:intron | 45.0% | |
| GCTTCAAATAAAGGGCAACC+CGG | - | chr3_4:81115911-81115930 | None:intergenic | 45.0% | |
| TGGAACAGCACAGTATCTGT+CGG | + | chr3_4:81116377-81116396 | Msa0526960:CDS | 45.0% | |
| CACATTTAGGTAGCAGTTGG+TGG | + | chr3_4:81116515-81116534 | Msa0526960:intron | 45.0% | |
| ACTGACAGGATTGTTCCCTT+TGG | + | chr3_4:81116597-81116616 | Msa0526960:intron | 45.0% | |
| CTGACAGGATTGTTCCCTTT+GGG | + | chr3_4:81116598-81116617 | Msa0526960:intron | 45.0% | |
| AATCCTACTAAGAGGGCTTC+CGG | - | chr3_4:81116993-81117012 | None:intergenic | 45.0% | |
| CATGTTCTTAGAGGATCACG+TGG | - | chr3_4:81117201-81117220 | None:intergenic | 45.0% | |
| ACACAGCATCGCTGTTAACT+GGG | - | chr3_4:81117345-81117364 | None:intergenic | 45.0% | |
| CAGTGGCTTCTCTACATTCT+GGG | + | chr3_4:81117435-81117454 | Msa0526960:CDS | 45.0% | |
| GGAACAGAAAATTAGCCCTC+AGG | + | chr3_4:81117456-81117475 | Msa0526960:CDS | 45.0% | |
| AATTAGCCCTCAGGTATGCA+AGG | + | chr3_4:81117465-81117484 | Msa0526960:CDS | 45.0% | |
| ATTAGCCCTCAGGTATGCAA+GGG | + | chr3_4:81117466-81117485 | Msa0526960:CDS | 45.0% | |
| AAGCTATGCAGATTGGAGCA+CGG | + | chr3_4:81117687-81117706 | Msa0526960:CDS | 45.0% | |
| TCTGCGAATCAATGCTCTCT+TGG | - | chr3_4:81117769-81117788 | None:intergenic | 45.0% | |
| !! | AGAGAGCATTGATTCGCAGA+AGG | + | chr3_4:81117769-81117788 | Msa0526960:CDS | 45.0% |
| CGAACTTGAAGAGTTAGAGC+TGG | + | chr3_4:81117955-81117974 | Msa0526960:CDS | 45.0% | |
| !! | AGAGGCTCAAGTTGATACAC+CGG | + | chr3_4:81117988-81118007 | Msa0526960:CDS | 45.0% |
| AGTTGCAGTTCCTTCTTCAC+TGG | - | chr3_4:81118026-81118045 | None:intergenic | 45.0% | |
| AAACTTTCAGACCGTCCAGT+CGG | + | chr3_4:81118088-81118107 | Msa0526960:CDS | 45.0% | |
| GAAGTCAAGAACCACTCATG+CGG | + | chr3_4:81118111-81118130 | Msa0526960:CDS | 45.0% | |
| ! | AGGTCCTTTGAGCACACTTT+TGG | + | chr3_4:81118372-81118391 | Msa0526960:three_prime_UTR | 45.0% |
| ! | GGTCCTTTGAGCACACTTTT+GGG | + | chr3_4:81118373-81118392 | Msa0526960:three_prime_UTR | 45.0% |
| ! | AGTCCCAAAAGTGTGCTCAA+AGG | - | chr3_4:81118379-81118398 | None:intergenic | 45.0% |
| GAAGGTGACATCACAAGACG+TGG | + | chr3_4:81115034-81115053 | Msa0526960:CDS | 50.0% | |
| AGGTGACATCACAAGACGTG+GGG | + | chr3_4:81115036-81115055 | Msa0526960:CDS | 50.0% | |
| TGGGAGAATCTTCCACTCGT+TGG | - | chr3_4:81115073-81115092 | None:intergenic | 50.0% | |
| GCCATGATATCTGGTGTAGC+TGG | - | chr3_4:81115130-81115149 | None:intergenic | 50.0% | |
| ATGAACTCTACAAGGGTGGC+CGG | - | chr3_4:81115332-81115351 | None:intergenic | 50.0% | |
| ! | TGTACACAGTTGAGGCATCC+AGG | + | chr3_4:81115399-81115418 | Msa0526960:intron | 50.0% |
| ! | GTACACAGTTGAGGCATCCA+GGG | + | chr3_4:81115400-81115419 | Msa0526960:intron | 50.0% |
| GTCAGATTTCTCAGAGACCC+TGG | - | chr3_4:81115420-81115439 | None:intergenic | 50.0% | |
| GTTGTTGTCATGCGACCGTA+AGG | + | chr3_4:81115769-81115788 | Msa0526960:intron | 50.0% | |
| GACTTGAACCCGTGACCTTA+CGG | - | chr3_4:81115787-81115806 | None:intergenic | 50.0% | |
| CTAAAGCTCCCGCATACACA+GGG | - | chr3_4:81115884-81115903 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGCATACAC+AGG | - | chr3_4:81115885-81115904 | None:intergenic | 50.0% | |
| CATGAACGGTTGCTGATACC+AGG | - | chr3_4:81116079-81116098 | None:intergenic | 50.0% | |
| AGTTTGCAGCTTGCAGGACT+TGG | + | chr3_4:81116137-81116156 | Msa0526960:intron | 50.0% | |
| GTTTGCAGCTTGCAGGACTT+GGG | + | chr3_4:81116138-81116157 | Msa0526960:intron | 50.0% | |
| ! | TTGAGGTATCTGTCAGGGTG+TGG | + | chr3_4:81116357-81116376 | Msa0526960:CDS | 50.0% |
| ACAGGATTGTTCCCTTTGGG+AGG | + | chr3_4:81116601-81116620 | Msa0526960:intron | 50.0% | |
| CTCTCAGCAGCAGCATTATC+TGG | + | chr3_4:81116711-81116730 | Msa0526960:CDS | 50.0% | |
| GACACAGCATCGCTGTTAAC+TGG | - | chr3_4:81117346-81117365 | None:intergenic | 50.0% | |
| GCAGTGGCTTCTCTACATTC+TGG | + | chr3_4:81117434-81117453 | Msa0526960:CDS | 50.0% | |
| GTATGCAAGGGAGCTGAAGT+TGG | + | chr3_4:81117478-81117497 | Msa0526960:CDS | 50.0% | |
| AGCTATGCAGATTGGAGCAC+GGG | + | chr3_4:81117688-81117707 | Msa0526960:CDS | 50.0% | |
| ! | AGAGCTGGCTCTTGAGAAAG+AGG | + | chr3_4:81117970-81117989 | Msa0526960:CDS | 50.0% |
| AACTTTCAGACCGTCCAGTC+GGG | + | chr3_4:81118089-81118108 | Msa0526960:CDS | 50.0% | |
| TTCTTGACTTCCCGACTGGA+CGG | - | chr3_4:81118102-81118121 | None:intergenic | 50.0% | |
| TGAACTCTACAAGGGTGGCC+GGG | - | chr3_4:81115331-81115350 | None:intergenic | 55.0% | |
| GTCATGCGACCGTAAGGTCA+CGG | + | chr3_4:81115775-81115794 | Msa0526960:intron | 55.0% | |
| TCATGCGACCGTAAGGTCAC+GGG | + | chr3_4:81115776-81115795 | Msa0526960:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr3_4:81115788-81115807 | Msa0526960:intron | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr3_4:81115889-81115908 | Msa0526960:intron | 55.0% |
| TCAGGAGATATGTGGAGGGC+CGG | + | chr3_4:81116317-81116336 | Msa0526960:CDS | 55.0% | |
| CAGCTCCCTTGCATACCTGA+GGG | - | chr3_4:81117474-81117493 | None:intergenic | 55.0% | |
| TCAGCTCCCTTGCATACCTG+AGG | - | chr3_4:81117475-81117494 | None:intergenic | 55.0% | |
| GTGGTTCTTGACTTCCCGAC+TGG | - | chr3_4:81118106-81118125 | None:intergenic | 55.0% | |
| ACCACTCATGCGGCATCTGA+AGG | + | chr3_4:81118121-81118140 | Msa0526960:CDS | 55.0% | |
| TCCTTCAGATGCCGCATGAG+TGG | - | chr3_4:81118125-81118144 | None:intergenic | 55.0% | |
| AACCCTCATTTGGCACCCCA+AGG | + | chr3_4:81118335-81118354 | Msa0526960:three_prime_UTR | 55.0% | |
| ! | CACCTTGGGGTGCCAAATGA+GGG | - | chr3_4:81118340-81118359 | None:intergenic | 55.0% |
| GAGGGAGACGCTCATTTGAG+AGG | - | chr3_4:81118457-81118476 | None:intergenic | 55.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr3_4:81115857-81115876 | Msa0526960:intron | 60.0% |
| CATACACAGGGTCCGGGAAG+GGG | - | chr3_4:81115872-81115891 | None:intergenic | 60.0% | |
| GCATACACAGGGTCCGGGAA+GGG | - | chr3_4:81115873-81115892 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGTGTATG+CGG | + | chr3_4:81115872-81115891 | Msa0526960:intron | 60.0% | |
| TTCCCGGACCCTGTGTATGC+GGG | + | chr3_4:81115873-81115892 | Msa0526960:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr3_4:81115890-81115909 | Msa0526960:intron | 60.0% |
| GTGCCGGAAGCCCTCTTAGT+AGG | + | chr3_4:81116987-81117006 | Msa0526960:intron | 60.0% | |
| ! | GCACCTTGGGGTGCCAAATG+AGG | - | chr3_4:81118341-81118360 | None:intergenic | 60.0% |
| !! | TGAGCCGTGGAAGCACCTTG+GGG | - | chr3_4:81118353-81118372 | None:intergenic | 60.0% |
| !! | CTGAGCCGTGGAAGCACCTT+GGG | - | chr3_4:81118354-81118373 | None:intergenic | 60.0% |
| TGCTCAAAGGACCTGAGCCG+TGG | - | chr3_4:81118366-81118385 | None:intergenic | 60.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr3_4:81115859-81115878 | None:intergenic | 65.0% | |
| CGCATACACAGGGTCCGGGA+AGG | - | chr3_4:81115874-81115893 | None:intergenic | 65.0% | |
| CTCCCGCATACACAGGGTCC+GGG | - | chr3_4:81115878-81115897 | None:intergenic | 65.0% | |
| GCTCCCGCATACACAGGGTC+CGG | - | chr3_4:81115879-81115898 | None:intergenic | 65.0% | |
| ! | GGCACCCCAAGGTGCTTCCA+CGG | + | chr3_4:81118346-81118365 | Msa0526960:three_prime_UTR | 65.0% |
| !! | CCTGAGCCGTGGAAGCACCT+TGG | - | chr3_4:81118355-81118374 | None:intergenic | 65.0% |
| ! | CCAAGGTGCTTCCACGGCTC+AGG | + | chr3_4:81118352-81118371 | Msa0526960:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 81114057 | 81118489 | 81114057 | ID=Msa0526960;Name=Msa0526960 |
| chr3_4 | mRNA | 81114057 | 81118489 | 81114057 | ID=Msa0526960-mRNA-1;Parent=Msa0526960;Name=Msa0526960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=106|1|1|1|1|1|8|318|429 |
| chr3_4 | exon | 81114057 | 81114351 | 81114057 | ID=Msa0526960-mRNA-1:exon:24445;Parent=Msa0526960-mRNA-1 |
| chr3_4 | exon | 81114435 | 81114494 | 81114435 | ID=Msa0526960-mRNA-1:exon:24446;Parent=Msa0526960-mRNA-1 |
| chr3_4 | exon | 81115019 | 81115183 | 81115019 | ID=Msa0526960-mRNA-1:exon:24447;Parent=Msa0526960-mRNA-1 |
| chr3_4 | exon | 81116240 | 81116422 | 81116240 | ID=Msa0526960-mRNA-1:exon:24448;Parent=Msa0526960-mRNA-1 |
| chr3_4 | exon | 81116696 | 81116826 | 81116696 | ID=Msa0526960-mRNA-1:exon:24449;Parent=Msa0526960-mRNA-1 |
| chr3_4 | exon | 81117421 | 81117589 | 81117421 | ID=Msa0526960-mRNA-1:exon:24450;Parent=Msa0526960-mRNA-1 |
| chr3_4 | exon | 81117680 | 81117809 | 81117680 | ID=Msa0526960-mRNA-1:exon:24451;Parent=Msa0526960-mRNA-1 |
| chr3_4 | exon | 81117909 | 81118489 | 81117909 | ID=Msa0526960-mRNA-1:exon:24452;Parent=Msa0526960-mRNA-1 |
| chr3_4 | five_prime_UTR | 81114057 | 81114162 | 81114057 | ID=Msa0526960-mRNA-1:five_prime_utr;Parent=Msa0526960-mRNA-1 |
| chr3_4 | CDS | 81114163 | 81114351 | 81114163 | ID=Msa0526960-mRNA-1:cds;Parent=Msa0526960-mRNA-1 |
| chr3_4 | CDS | 81114435 | 81114494 | 81114435 | ID=Msa0526960-mRNA-1:cds;Parent=Msa0526960-mRNA-1 |
| chr3_4 | CDS | 81115019 | 81115183 | 81115019 | ID=Msa0526960-mRNA-1:cds;Parent=Msa0526960-mRNA-1 |
| chr3_4 | CDS | 81116240 | 81116422 | 81116240 | ID=Msa0526960-mRNA-1:cds;Parent=Msa0526960-mRNA-1 |
| chr3_4 | CDS | 81116696 | 81116826 | 81116696 | ID=Msa0526960-mRNA-1:cds;Parent=Msa0526960-mRNA-1 |
| chr3_4 | CDS | 81117421 | 81117589 | 81117421 | ID=Msa0526960-mRNA-1:cds;Parent=Msa0526960-mRNA-1 |
| chr3_4 | CDS | 81117680 | 81117809 | 81117680 | ID=Msa0526960-mRNA-1:cds;Parent=Msa0526960-mRNA-1 |
| chr3_4 | CDS | 81117909 | 81118171 | 81117909 | ID=Msa0526960-mRNA-1:cds;Parent=Msa0526960-mRNA-1 |
| chr3_4 | three_prime_UTR | 81118172 | 81118489 | 81118172 | ID=Msa0526960-mRNA-1:three_prime_utr;Parent=Msa0526960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
