AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0528730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0528730 MtrunA17_Chr4g0042711 98.422 507 8 0 1 507 1 507 0.0 1046
Msa0528730 MtrunA17_Chr5g0417871 80.041 486 90 3 28 506 9 494 0.0 823
Msa0528730 MtrunA17_Chr6g0455571 59.006 483 196 2 8 488 25 507 0.0 605
Msa0528730 MtrunA17_Chr4g0061781 61.588 466 173 2 29 488 43 508 0.0 603
Msa0528730 MtrunA17_Chr2g0307971 57.809 493 202 3 8 499 30 517 0.0 597
Msa0528730 MtrunA17_Chr5g0426591 48.675 415 201 4 87 489 97 511 1.93e-140 414
Msa0528730 MtrunA17_Chr4g0070551 48.485 396 197 5 97 490 228 618 9.24e-136 406
Msa0528730 MtrunA17_Chr4g0008451 48.371 399 199 5 97 493 232 625 3.46e-134 402
Msa0528730 MtrunA17_Chr3g0132371 47.952 415 201 5 87 489 127 538 1.42e-131 392
Msa0528730 MtrunA17_Chr5g0436321 46.599 397 205 5 96 490 160 551 1.82e-129 388
Msa0528730 MtrunA17_Chr3g0129981 45.735 422 200 8 87 489 100 511 1.25e-124 374
Msa0528730 MtrunA17_Chr3g0143821 43.358 399 207 9 98 492 112 495 6.11e-100 312
Msa0528730 MtrunA17_Chr5g0399311 42.410 415 214 10 92 499 119 515 3.46e-99 308
Msa0528730 MtrunA17_Chr4g0056061 40.876 411 220 8 93 497 104 497 3.31e-98 306
Msa0528730 MtrunA17_Chr5g0448581 40.393 458 239 11 54 505 90 519 1.52e-97 306
Msa0528730 MtrunA17_Chr1g0204121 39.716 423 223 11 83 492 74 477 5.18e-93 292
Msa0528730 MtrunA17_Chr5g0412251 38.051 431 218 9 97 491 86 503 1.17e-90 286
Msa0528730 MtrunA17_Chr3g0123521 39.487 390 216 7 90 464 144 528 2.31e-89 284
Msa0528730 MtrunA17_Chr3g0132951 36.613 437 228 9 91 491 94 517 6.13e-88 279
Msa0528730 MtrunA17_Chr1g0204141 38.005 421 236 10 83 492 74 480 2.71e-84 270
Msa0528730 MtrunA17_Chr4g0043911 35.096 416 243 10 97 496 150 554 5.83e-82 265
Msa0528730 MtrunA17_Chr5g0424241 36.650 412 231 10 98 489 158 559 7.17e-79 258
Msa0528730 MtrunA17_Chr4g0075311 37.642 441 220 11 94 489 161 591 1.48e-78 257
Msa0528730 MtrunA17_Chr2g0284071 35.892 443 231 10 91 490 209 641 4.63e-78 257
Msa0528730 MtrunA17_Chr1g0160781 34.223 412 244 9 97 492 149 549 1.18e-76 251
Msa0528730 MtrunA17_Chr3g0077321 35.507 414 232 11 97 490 147 545 1.55e-74 245
Msa0528730 MtrunA17_Chr3g0087291 36.432 398 234 9 100 492 176 559 1.06e-71 238
Msa0528730 MtrunA17_Chr4g0010511 36.409 401 236 8 100 495 236 622 6.52e-71 237
Msa0528730 MtrunA17_Chr7g0240241 77.419 124 24 1 256 375 1 124 1.09e-60 195
Msa0528730 MtrunA17_Chr4g0003561 33.957 374 221 9 90 457 68 421 9.32e-59 201
Msa0528730 MtrunA17_Chr3g0127811 32.997 297 171 8 97 379 63 345 5.78e-42 156
Msa0528730 MtrunA17_Chr1g0146501 32.686 309 180 8 94 379 82 385 9.20e-42 158
Msa0528730 MtrunA17_Chr7g0220381 31.148 305 185 7 85 370 86 384 3.44e-39 151
Msa0528730 MtrunA17_Chr4g0002361 26.225 347 196 12 97 427 86 388 8.87e-24 103
Msa0528730 MtrunA17_Chr1g0172911 58.000 50 21 0 209 258 80 129 2.40e-12 64.3
Msa0528730 MtrunA17_Chr1g0172911 47.761 67 11 1 95 137 19 85 1.37e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0528730 AT1G14020.1 71.881 505 136 2 1 505 1 499 0.0 761
Msa0528730 AT2G03280.1 69.528 466 130 4 24 488 26 480 0.0 687
Msa0528730 AT2G03280.2 65.720 493 130 5 24 488 26 507 0.0 672
Msa0528730 AT5G15740.1 58.030 467 194 2 23 488 33 498 0.0 581
Msa0528730 AT3G02250.1 58.491 477 190 4 15 488 27 498 0.0 576
Msa0528730 AT2G37980.1 46.453 437 227 5 73 507 202 633 1.36e-137 411
Msa0528730 AT3G54100.1 46.065 432 216 7 73 497 198 619 1.21e-133 401
Msa0528730 AT5G35570.1 47.407 405 206 5 96 498 250 649 2.18e-132 399
Msa0528730 AT1G22460.1 45.370 432 216 6 76 490 130 558 2.54e-129 388
Msa0528730 AT5G64600.1 46.778 419 200 8 87 489 103 514 1.78e-128 384
Msa0528730 AT5G01100.1 47.132 401 204 5 97 493 216 612 2.95e-128 387
Msa0528730 AT1G76270.1 44.584 397 204 7 100 494 109 491 1.99e-104 324
Msa0528730 AT4G38390.1 43.500 400 212 7 97 494 123 510 2.03e-102 318
Msa0528730 AT1G20550.1 42.157 408 220 7 100 505 112 505 6.59e-102 317
Msa0528730 AT4G16650.2 43.521 409 207 10 89 490 113 504 3.36e-95 299
Msa0528730 AT4G16650.1 43.521 409 207 10 89 490 113 504 3.36e-95 299
Msa0528730 AT1G04910.1 36.853 464 259 10 50 506 57 493 7.60e-92 290
Msa0528730 AT4G24530.1 37.674 430 219 9 97 490 101 517 9.79e-90 284
Msa0528730 AT3G26370.1 38.974 390 218 7 90 464 152 536 3.38e-89 284
Msa0528730 AT5G65470.1 35.581 430 226 9 99 490 87 503 1.57e-86 275
Msa0528730 AT1G11990.1 39.173 411 222 10 98 491 191 590 2.18e-82 267
Msa0528730 AT1G62330.1 34.862 436 232 8 98 489 222 649 2.79e-82 268
Msa0528730 AT1G38065.1 36.427 431 238 11 79 489 24 438 5.81e-82 263
Msa0528730 AT1G38065.2 37.046 413 230 10 97 489 26 428 6.69e-82 262
Msa0528730 AT1G38131.1 37.046 413 230 10 97 489 155 557 1.74e-80 262
Msa0528730 AT1G11990.2 36.161 448 221 10 98 491 176 612 1.84e-77 254
Msa0528730 AT5G63390.1 38.000 400 228 9 100 493 167 552 1.94e-76 251
Msa0528730 AT1G29200.4 37.931 435 219 11 97 490 70 494 2.67e-76 248
Msa0528730 AT1G29200.1 37.931 435 219 11 97 490 70 494 2.67e-76 248
Msa0528730 AT1G35510.1 35.012 417 240 10 92 490 154 557 3.98e-75 248
Msa0528730 AT1G29200.2 37.931 435 219 11 97 490 186 610 4.94e-75 248
Msa0528730 AT2G01480.1 36.314 369 213 7 97 449 154 516 1.11e-74 246
Msa0528730 AT1G14970.3 34.140 413 245 10 97 493 9 410 1.36e-74 242
Msa0528730 AT1G14970.2 34.140 413 245 10 97 493 35 436 2.53e-74 242
Msa0528730 AT2G01480.2 36.695 357 207 6 97 437 154 507 2.97e-74 244
Msa0528730 AT1G29200.3 37.762 429 216 11 103 490 2 420 3.92e-74 241
Msa0528730 AT1G14970.1 34.140 413 245 10 97 493 155 556 3.06e-73 242
Msa0528730 AT2G44500.1 37.626 396 227 10 100 489 180 561 6.31e-73 242
Msa0528730 AT3G07900.1 34.634 410 247 8 84 489 180 572 5.87e-69 231
Msa0528730 AT1G52630.1 32.708 373 224 10 90 458 70 419 5.19e-59 201
Msa0528730 AT3G03810.2 35.855 304 178 7 91 379 83 384 8.56e-50 181
Msa0528730 AT3G03810.1 35.855 304 178 7 91 379 83 384 8.56e-50 181
Msa0528730 AT1G52630.2 31.054 351 218 9 112 458 1 331 1.09e-49 174
Msa0528730 AT3G26370.2 39.171 217 119 5 90 296 152 365 1.11e-45 164
Msa0528730 AT3G30300.2 33.333 306 180 7 91 379 97 395 2.93e-43 163
Msa0528730 AT3G30300.1 33.333 306 180 7 91 379 97 395 2.93e-43 163
Msa0528730 AT2G44500.2 39.914 233 127 7 100 326 180 405 4.56e-39 147
Msa0528730 AT1G51630.1 24.845 322 192 9 96 406 90 372 7.34e-19 89.4

Find 268 sgRNAs with CRISPR-Local

Find 475 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTTGTTGCAGTGTTTA+AGG 0.136425 4_1:+1667268 Msa0528730:five_prime_UTR
TTGATCATCGTCCCCTTTAA+AGG 0.157833 4_1:+1671753 Msa0528730:three_prime_UTR
TTATACAACTATACTGAATT+TGG 0.182459 4_1:-1671532 Msa0528740:three_prime_UTR
CAAATTCTGTGGACACAATT+TGG 0.185076 4_1:+1667144 Msa0528730:five_prime_UTR
CCATCTGTGATGAATGATTT+TGG 0.203102 4_1:-1670811 None:intergenic
AAAGTTCTGCTGCAACTTTC+TGG 0.203760 4_1:+1672883 Msa0528730:three_prime_UTR
ATTGCAGCCGGTGAGATTTA+TGG 0.227102 4_1:+1670437 Msa0528730:CDS
TGGCATTCCAATTTCTTTAC+TGG 0.232585 4_1:+1667611 Msa0528730:CDS
TTGCAGATTTGTGTTAATTT+TGG 0.236857 4_1:+1667364 Msa0528730:intron
GGGTACCGATGCTTTCTTAT+TGG 0.244903 4_1:-1672501 Msa0528740:three_prime_UTR
TCAGATATGCATTCCCTTCA+TGG 0.261168 4_1:+1670297 Msa0528730:intron
GATGGCTGCTTTGGATTTCA+TGG 0.269401 4_1:+1670829 Msa0528730:CDS
TGCATTCAATCAACCTTTAA+AGG 0.269412 4_1:-1671766 Msa0528740:three_prime_UTR
AGATTGCTCTTGCATACTTA+TGG 0.269547 4_1:-1671354 Msa0528740:three_prime_UTR
AGTAAATCCAGTAAAGAAAT+TGG 0.278555 4_1:-1667618 None:intergenic
ACCAGCTTCAAATTCAATTC+TGG 0.279415 4_1:+1667204 Msa0528730:five_prime_UTR
CACCCCTCAAATTGAGAATC+TGG 0.293410 4_1:+1669900 Msa0528730:CDS
TGCTTTGGATTTCATGGTTT+CGG 0.294885 4_1:+1670835 Msa0528730:CDS
CAAAATACTTCTAATCTTGC+AGG 0.301113 4_1:-1671897 Msa0528740:three_prime_UTR
ACCAGCAAGGGCGGATTTGC+AGG 0.304466 4_1:+1672388 Msa0528730:three_prime_UTR
TCCTTTCTTTCCATTCTCAT+TGG 0.305081 4_1:+1667034 Msa0528730:five_prime_UTR
TTCATCACAGATGGCTGCTT+TGG 0.305983 4_1:+1670820 Msa0528730:CDS
CCAGCTTCAAATTCAATTCT+GGG 0.308049 4_1:+1667205 Msa0528730:five_prime_UTR
TTCTAAGAGTGTCCTGCAAT+GGG 0.310538 4_1:+1668904 Msa0528730:CDS
TTGCTTGATATGCATCAAAA+TGG 0.313563 4_1:+1671090 Msa0528730:CDS
CATCTTTGCAAGCCTCTATA+TGG 0.317158 4_1:-1671477 Msa0528740:three_prime_UTR
CTTTCTGGCTCTGATACATT+TGG 0.328912 4_1:+1672898 Msa0528730:three_prime_UTR
CTAAGTTTCTGTAGATCAAT+TGG 0.331955 4_1:-1669847 None:intergenic
AAGGATTTCTTATCAAGTTC+CGG 0.337356 4_1:-1669087 None:intergenic
TTGACAGAAAGGGGCTCCTT+AGG 0.339783 4_1:+1673122 Msa0528730:three_prime_UTR
GCTTTCTCAGGTTGTACTCT+TGG 0.343079 4_1:+1670000 Msa0528730:CDS
GCAGAGTTGGCTCTGGACTA+TGG 0.343115 4_1:-1672716 Msa0528740:three_prime_UTR
ATAGAAATTTCAAATAATCT+TGG 0.344130 4_1:-1666707 None:intergenic
ATGCAAGAGCAATCTGAAAA+TGG 0.345318 4_1:+1671362 Msa0528730:three_prime_UTR
AACTTGATAAGAAATCCTTT+TGG 0.353716 4_1:+1669091 Msa0528730:CDS
GCCTGCAAATCCGCCCTTGC+TGG 0.360260 4_1:-1672389 Msa0528740:three_prime_UTR
TAGAAATAATCCTCCTCCTT+TGG 0.360561 4_1:-1671207 Msa0528740:three_prime_UTR
TAGCGCTCATGCAGGTATTC+CGG 0.363730 4_1:+1671024 Msa0528730:intron
AACAACAGTATGTCATTAAC+TGG 0.364991 4_1:+1671863 Msa0528730:three_prime_UTR
CATTGTGCTGTGGACATGTT+TGG 0.367522 4_1:+1667562 Msa0528730:CDS
CACTGTTCAGAGACTCCATC+TGG 0.373117 4_1:-1672475 Msa0528740:three_prime_UTR
GCATTCAATCAACCTTTAAA+GGG 0.374835 4_1:-1671765 Msa0528740:three_prime_UTR
AGGGGCTCCTTAGGGCAAAT+AGG 0.381120 4_1:+1673131 Msa0528730:three_prime_UTR
GCAAGCAAGTTCTTCATCAT+TGG 0.385250 4_1:-1666668 None:intergenic
TGCTCTTGCATACTTATGGT+TGG 0.387006 4_1:-1671350 Msa0528740:three_prime_UTR
ACCTTTATTCCTACCTATGA+TGG 0.388352 4_1:+1670869 Msa0528730:CDS
GATCTTCGAGCAGAAAGAAT+TGG 0.388839 4_1:-1672007 Msa0528740:three_prime_UTR
AGCTAACAGGAGGCATCTCC+AGG 0.388940 4_1:-1669322 None:intergenic
GCTCTTGCATACTTATGGTT+GGG 0.392646 4_1:-1671349 Msa0528740:three_prime_UTR
ATGGACATGCTGGCTTTCTC+AGG 0.395187 4_1:+1669988 Msa0528730:CDS
TGCCCCAGATTCTCAATTTG+AGG 0.396144 4_1:-1669904 None:intergenic
TCACATGCGTTCACCGTAGA+AGG 0.396385 4_1:+1671789 Msa0528730:three_prime_UTR
TTCTGTCAAGGCAGGAGAAC+AGG 0.398267 4_1:-1673108 Msa0528740:CDS
GAACCTCACATTGGTTGTTC+CGG 0.404001 4_1:+1669068 Msa0528730:CDS
CCATCTTATTGGACCGGAAA+AGG 0.405140 4_1:+1671058 Msa0528730:CDS
ACAAGCTGCAGGCATGTAAT+GGG 0.405918 4_1:+1671702 Msa0528730:three_prime_UTR
CTCAAGGATCTTGGACTTTG+CGG 0.406199 4_1:-1671949 Msa0528740:three_prime_UTR
GAAAGGAGGCTCAAGGATCT+TGG 0.407166 4_1:-1671958 Msa0528740:three_prime_UTR
TATGCATATCGATCTGCATT+TGG 0.408825 4_1:+1672683 Msa0528730:three_prime_UTR
TTCTCCTGCCTTGACAGAAA+GGG 0.411526 4_1:+1673112 Msa0528730:three_prime_UTR
TACAAGCTGCAGGCATGTAA+TGG 0.411895 4_1:+1671701 Msa0528730:three_prime_UTR
CTGAAAATGGCTCCTTCCCT+CGG 0.419876 4_1:+1671375 Msa0528730:three_prime_UTR
AGTGCTACTAATCTCAGATA+TGG 0.428804 4_1:+1672527 Msa0528730:three_prime_UTR
GCCTTGGTTATGCAAGCCTT+AGG 0.432969 4_1:+1670389 Msa0528730:CDS
CCCATCATAGGTAGGAATAA+AGG 0.436770 4_1:-1670870 None:intergenic
GTGCATGGATTCAAAGGTTT+GGG 0.437538 4_1:-1666853 None:intergenic
GCAGGAAATTATACTAGTAA+TGG 0.439060 4_1:+1668879 Msa0528730:intron
TTTCCTTGATATGGAAGAGC+TGG 0.441012 4_1:+1672941 Msa0528730:three_prime_UTR
TTTCTTGATAATATTCCAAC+TGG 0.444121 4_1:+1671977 Msa0528730:three_prime_UTR
TTTCTAAGAGTGTCCTGCAA+TGG 0.444915 4_1:+1668903 Msa0528730:CDS
ATACCTACGGTCTGCCCAAA+AGG 0.445579 4_1:-1669106 None:intergenic
AGGAAATAGTGTCTGAAGAA+AGG 0.445827 4_1:+1670327 Msa0528730:CDS
GATTTCATGGTTTCGGTAGC+CGG 0.450519 4_1:+1670842 Msa0528730:CDS
GGAACTGCTGTAACTCATCA+AGG 0.452325 4_1:-1670790 None:intergenic
TGTGCATGGATTCAAAGGTT+TGG 0.454873 4_1:-1666854 None:intergenic
TGAAAAGTGTGTGAAGGTTA+TGG 0.457566 4_1:+1667390 Msa0528730:five_prime_UTR
AAAAGTCCATCTTATTGGAC+CGG 0.458534 4_1:+1671052 Msa0528730:CDS
ATAGTTTATTACCTGTTCAA+TGG 0.458942 4_1:+1672355 Msa0528730:intron
TGAAGTGTGTGACAAAGAAA+TGG 0.461488 4_1:+1667427 Msa0528730:exon
GAAGTGCACCACCTTGTGTT+TGG 0.463947 4_1:-1669788 None:intergenic
AAGCTGCTCCTTTGATTCCA+AGG 0.468221 4_1:+1667501 Msa0528730:CDS
GTTCTCCTGCCTTGACAGAA+AGG 0.468467 4_1:+1673111 Msa0528730:three_prime_UTR
CTTACTTGAGTAGAGTTATG+AGG 0.468781 4_1:-1671285 Msa0528740:three_prime_UTR
TTGGGAGACCATTATTTGCT+AGG 0.469220 4_1:-1669828 None:intergenic
GCCCCAGATTCTCAATTTGA+GGG 0.469715 4_1:-1669903 None:intergenic
TTATTCTGGCAGTGGCTTCG+AGG 0.470272 4_1:+1669199 Msa0528730:intron
GAATAAACCAAACACGAAAA+CGG 0.470528 4_1:-1667526 None:intergenic
TCCAATGAGAATGGAAAGAA+AGG 0.471672 4_1:-1667035 None:intergenic
CTAACTTGCAGGAAGTAGAA+TGG 0.473374 4_1:-1667705 None:intergenic
TAAGTTTCTGTAGATCAATT+GGG 0.475386 4_1:-1669846 None:intergenic
TGGAGATGCCTCCTGTTAGC+TGG 0.475776 4_1:+1669324 Msa0528730:CDS
TTGTGACTGTGAGTGAACTA+TGG 0.476628 4_1:+1667591 Msa0528730:CDS
TGACAGAAAGGGGCTCCTTA+GGG 0.476680 4_1:+1673123 Msa0528730:three_prime_UTR
AGATATGGAAGCATCCCTTC+TGG 0.477120 4_1:+1672542 Msa0528730:three_prime_UTR
CTCCTCATTATCACGGCTCA+TGG 0.477204 4_1:+1672436 Msa0528730:three_prime_UTR
AAGCAATGCAGAGTTGGCTC+TGG 0.478444 4_1:-1672723 Msa0528740:three_prime_UTR
TAACTTGCAGGAAGTAGAAT+GGG 0.479064 4_1:-1667704 None:intergenic
CAAACACGAAAACGGCTCCT+TGG 0.481546 4_1:-1667518 None:intergenic
CTCCATCTGGGGTCATCTTG+AGG 0.481584 4_1:-1672462 Msa0528740:three_prime_UTR
GAAATATATGTTCCATATAG+AGG 0.482623 4_1:+1671465 Msa0528730:three_prime_UTR
AATTGTGTGCATGGATTCAA+AGG 0.483270 4_1:-1666859 None:intergenic
ACCCCTCAAATTGAGAATCT+GGG 0.484445 4_1:+1669901 Msa0528730:CDS
AAGAGGCAAATCTAGATTCA+AGG 0.484970 4_1:-1672089 Msa0528740:three_prime_UTR
GAGGGGTGAATTTAAGTGCC+TGG 0.487600 4_1:-1669885 None:intergenic
GTCAAATGAAAAGTATTACT+TGG 0.489028 4_1:+1669346 Msa0528730:CDS
CTCAGATGCAATGCCACAAA+AGG 0.490594 4_1:-1669958 None:intergenic
ACAACTATACTGAATTTGGT+GGG 0.497845 4_1:-1671528 Msa0528740:three_prime_UTR
GGGATTACCTATTTGCCCTA+AGG 0.498091 4_1:-1673138 Msa0528740:CDS
AAACAAAAGCAATGCAGAGT+TGG 0.498255 4_1:-1672729 Msa0528740:three_prime_UTR
ATTTCCTTCTCTCTCCATGA+AGG 0.500444 4_1:-1670311 None:intergenic
AGGTGAGGATCCAATGAGAA+TGG 0.501136 4_1:-1667044 None:intergenic
GTAGATGAATTGAGAGATCC+AGG 0.502785 4_1:-1666831 None:intergenic
GATGCACGCCTAGCAAATAA+TGG 0.504541 4_1:+1669820 Msa0528730:CDS
CCCAGAATTGAATTTGAAGC+TGG 0.505271 4_1:-1667205 None:intergenic
ATAACCAAGGCAGTCTCCTC+CGG 0.505709 4_1:-1670377 None:intergenic
CAATTGATCTACAGAAACTT+AGG 0.505738 4_1:+1669848 Msa0528730:CDS
ATGGAAAGAAAGGATCAAAT+CGG 0.506036 4_1:-1667025 None:intergenic
ACAGGTTCACGAAAAGAGAA+TGG 0.506682 4_1:+1671149 Msa0528730:CDS
CATGCCTGCAGCTTGTAAAG+TGG 0.508006 4_1:-1671695 Msa0528740:three_prime_UTR
CCGAGGATCTCAAGCGGATG+AGG 0.509548 4_1:+1670040 Msa0528730:CDS
TAGCCAGCTCTTCCATATCA+AGG 0.509727 4_1:-1672944 Msa0528740:three_prime_UTR
TATGCATACACCTTGACACT+GGG 0.512341 4_1:-1672668 Msa0528740:three_prime_UTR
GTCTGAAGAAAGGAGATCCC+AGG 0.512801 4_1:+1670337 Msa0528730:CDS
TACAACTATACTGAATTTGG+TGG 0.513828 4_1:-1671529 Msa0528740:three_prime_UTR
GCAGTCTCCTCCGGTGTCAA+AGG 0.517244 4_1:-1670368 None:intergenic
GTGTCAAAGGACATAGACCC+TGG 0.517880 4_1:-1670355 None:intergenic
TGGGTTGTAATAATTGTGGC+CGG 0.524912 4_1:+1671721 Msa0528730:three_prime_UTR
CACATTCATAACTGTGCAGT+TGG 0.525016 4_1:-1672787 Msa0528740:three_prime_UTR
GACACCGGAGGAGACTGCCT+TGG 0.525025 4_1:+1670373 Msa0528730:CDS
GCATCTACAAACTCATTCCA+TGG 0.525256 4_1:-1671120 Msa0528740:three_prime_UTR
GGAAGCATCCCTTCTGGAAG+AGG 0.525978 4_1:+1672548 Msa0528730:three_prime_UTR
GCCCATGAGCCGTGATAATG+AGG 0.527832 4_1:-1672438 Msa0528740:three_prime_UTR
TGAAAATGGCTCCTTCCCTC+GGG 0.528010 4_1:+1671376 Msa0528730:three_prime_UTR
TTGAAGAGCTTCAAATTCTG+TGG 0.528024 4_1:+1667133 Msa0528730:five_prime_UTR
ATCTGAGATTAGTAGCACTA+GGG 0.531413 4_1:-1672523 Msa0528740:three_prime_UTR
CTAAGAGTGTCCTGCAATGG+GGG 0.532495 4_1:+1668906 Msa0528730:CDS
CCTCATCCGCTTGAGATCCT+CGG 0.534275 4_1:-1670040 None:intergenic
GTTTGTAGATGCTGTGCGAC+AGG 0.534296 4_1:+1671131 Msa0528730:CDS
CTTGGACTTTGCGGTGAAAG+TGG 0.534968 4_1:-1671940 Msa0528740:three_prime_UTR
CCTTTATTCCTACCTATGAT+GGG 0.535492 4_1:+1670870 Msa0528730:CDS
AGTTGGAATATTATCAAGAA+AGG 0.536592 4_1:-1671975 Msa0528740:three_prime_UTR
ATCGCAAATGTAGCCTTCTA+CGG 0.536666 4_1:-1671802 Msa0528740:three_prime_UTR
AGAATTGGAACTAGACCAGT+TGG 0.537321 4_1:-1671992 Msa0528740:three_prime_UTR
TGAAAAGTATTACTTGGAGC+AGG 0.539964 4_1:+1669352 Msa0528730:CDS
CCAAAATCATTCATCACAGA+TGG 0.542359 4_1:+1670811 Msa0528730:CDS
CTTCAAATTCAATTCTGGGT+CGG 0.542473 4_1:+1667209 Msa0528730:five_prime_UTR
TCCTCATTATCACGGCTCAT+GGG 0.543503 4_1:+1672437 Msa0528730:three_prime_UTR
TGTCTCCCGGTCAAAACCTA+AGG 0.543702 4_1:-1670405 None:intergenic
AACTATACTGAATTTGGTGG+GGG 0.544382 4_1:-1671526 Msa0528740:three_prime_UTR
TATGAAGTCAAAGGACCAGC+TGG 0.544591 4_1:-1673172 Msa0528740:CDS
GAATTTGAAGCTGGTGAATG+AGG 0.546976 4_1:-1667196 None:intergenic
CTACAAACTCATTCCATGGA+AGG 0.551044 4_1:-1671116 Msa0528740:three_prime_UTR
GCAGGATCGCAAGCTGAAAG+AGG 0.551716 4_1:-1672106 Msa0528740:intron
TTGCGCCTCAGAATACAGCT+TGG 0.551987 4_1:+1672855 Msa0528730:three_prime_UTR
CACCTCAAGATGACCCCAGA+TGG 0.552036 4_1:+1672460 Msa0528730:three_prime_UTR
AAACGGCTCCTTGGAATCAA+AGG 0.552528 4_1:-1667509 None:intergenic
TCCCAAGAGAAAAGACCAGC+TGG 0.553440 4_1:+1673157 Msa0528730:three_prime_UTR
CCCCAGATTCTCAATTTGAG+GGG 0.555415 4_1:-1669902 None:intergenic
GAGATATGAGATGGACATGC+TGG 0.557518 4_1:+1669978 Msa0528730:CDS
ACTGTTCAGAGACTCCATCT+GGG 0.560536 4_1:-1672474 Msa0528740:three_prime_UTR
CAGGTTCACGAAAAGAGAAT+GGG 0.560835 4_1:+1671150 Msa0528730:CDS
ATCAAAATGGAACCCTTCCA+TGG 0.561331 4_1:+1671103 Msa0528730:CDS
TCTCCTGCCTTGACAGAAAG+GGG 0.563730 4_1:+1673113 Msa0528730:three_prime_UTR
CAATGTAAATCTGTGTCTCC+CGG 0.564211 4_1:-1670418 None:intergenic
GAGCCCCTTTCTGTCAAGGC+AGG 0.564419 4_1:-1673116 Msa0528740:CDS
TTTCCTTCTCTCTCCATGAA+GGG 0.565721 4_1:-1670310 None:intergenic
CCCTCATGAGTGCCTTTGTG+AGG 0.571802 4_1:+1671236 Msa0528730:CDS
TCTAAGAGTGTCCTGCAATG+GGG 0.572836 4_1:+1668905 Msa0528730:CDS
TAAGGAGCCCCTTTCTGTCA+AGG 0.573437 4_1:-1673120 Msa0528740:CDS
CAACTATACTGAATTTGGTG+GGG 0.573463 4_1:-1671527 Msa0528740:three_prime_UTR
ACACAGATTTACATTGCAGC+CGG 0.575721 4_1:+1670425 Msa0528730:CDS
GGGTCTATGTCCTTTGACAC+CGG 0.576261 4_1:+1670358 Msa0528730:CDS
ACAATGATTCGACGATAAGT+CGG 0.577569 4_1:-1671177 Msa0528740:three_prime_UTR
TATAACCGCCCTCTTCCAGA+AGG 0.578293 4_1:-1672557 Msa0528740:three_prime_UTR
CTCTAAGAACTTATGCCCGA+GGG 0.578429 4_1:-1671391 Msa0528740:three_prime_UTR
GTGACATGGTGACAATTGCT+CGG 0.579350 4_1:+1669040 Msa0528730:CDS
TGGGAACATGGCAAAACTTG+TGG 0.580054 4_1:+1670889 Msa0528730:CDS
ATGATCATCTGTAGTCACTC+TGG 0.581191 4_1:+1673198 Msa0528730:three_prime_UTR
GATCATGCTTATGAAGTCAA+AGG 0.581508 4_1:-1673181 Msa0528740:CDS
TAGGTGCCGTGTTAATTACC+AGG 0.582283 4_1:+1669867 Msa0528730:CDS
AGATCTCATCAATTTGCCGC+AGG 0.582417 4_1:+1672025 Msa0528730:three_prime_UTR
GATTCAGATACTTCGCGAGA+GGG 0.583952 4_1:+1669933 Msa0528730:CDS
TATCTGAGATTAGTAGCACT+AGG 0.584493 4_1:-1672524 Msa0528740:three_prime_UTR
GTTCATTCTCTATGTAATCA+CGG 0.584697 4_1:+1671600 Msa0528730:three_prime_UTR
ATATGCATACACCTTGACAC+TGG 0.586569 4_1:-1672669 Msa0528740:three_prime_UTR
TGTAGACAAACCAAAGGAGG+AGG 0.587728 4_1:+1671197 Msa0528730:CDS
CTCGGATATCCCCAGTGTCA+AGG 0.587901 4_1:+1672658 Msa0528730:three_prime_UTR
TACAAACTCATTCCATGGAA+GGG 0.592326 4_1:-1671115 Msa0528740:three_prime_UTR
AATTTGAAGCTGGTGAATGA+GGG 0.594717 4_1:-1667195 None:intergenic
GGTAGGAATAAAGGTGTCAC+CGG 0.594798 4_1:-1670861 None:intergenic
ACAAAGGCACTCATGAGGGT+TGG 0.596296 4_1:-1671232 Msa0528740:three_prime_UTR
CCCTCACAAAGGCACTCATG+AGG 0.597403 4_1:-1671237 Msa0528740:three_prime_UTR
TAGCAGTCGGAATAAGAGAA+GGG 0.598131 4_1:-1672059 Msa0528740:three_prime_UTR
AAGAACTTATGCCCGAGGGA+AGG 0.599553 4_1:-1671387 Msa0528740:three_prime_UTR
GCAATCCAAGCTGTATTCTG+AGG 0.600078 4_1:-1672860 Msa0528740:three_prime_UTR
GTAGACGTTGCTGAGACCAA+TGG 0.600772 4_1:-1672611 Msa0528740:three_prime_UTR
TCAAGGCTTGCAATAGCAGT+CGG 0.600784 4_1:-1672072 Msa0528740:three_prime_UTR
CACACTTTGTTCCCTCACAA+AGG 0.600880 4_1:-1671248 Msa0528740:three_prime_UTR
AACTTGTGGAAGGCCACCGC+AGG 0.602466 4_1:+1670903 Msa0528730:CDS
CCTCACAAAGGCACTCATGA+GGG 0.602588 4_1:-1671236 Msa0528740:three_prime_UTR
TGGAATATTATCAAGAAAGG+AGG 0.602703 4_1:-1671972 Msa0528740:three_prime_UTR
GCCATGTTCCCATCATAGGT+AGG 0.602990 4_1:-1670878 None:intergenic
CCCCTCAAATTGAGAATCTG+GGG 0.605300 4_1:+1669902 Msa0528730:CDS
ACAACTCAACGGCCTCCTCA+AGG 0.607711 4_1:+1667656 Msa0528730:CDS
ATTCTGTGGACACAATTTGG+TGG 0.607748 4_1:+1667147 Msa0528730:five_prime_UTR
ATAGCAGTCGGAATAAGAGA+AGG 0.608578 4_1:-1672060 Msa0528740:three_prime_UTR
AACATGGCAAAACTTGTGGA+AGG 0.609196 4_1:+1670893 Msa0528730:CDS
CCTCATGAGTGCCTTTGTGA+GGG 0.609759 4_1:+1671237 Msa0528730:CDS
TTATCAAGAAAGGAGGCTCA+AGG 0.609776 4_1:-1671965 Msa0528740:three_prime_UTR
TCCTACCTATGATGGGAACA+TGG 0.610654 4_1:+1670877 Msa0528730:CDS
TCTCTAAGAACTTATGCCCG+AGG 0.611187 4_1:-1671392 Msa0528740:three_prime_UTR
GGGTTGTAATAATTGTGGCC+GGG 0.612240 4_1:+1671722 Msa0528730:three_prime_UTR
TTTGAATCAAATGCGTGCAG+CGG 0.612731 4_1:+1668929 Msa0528730:CDS
ACAAAGTGTGATGATTTGCT+AGG 0.614058 4_1:+1671261 Msa0528730:CDS
AATGGAAGTTAGATCATCAG+AGG 0.614061 4_1:+1667445 Msa0528730:exon
GGCATTTCAGATTTGTGACA+TGG 0.614628 4_1:+1669026 Msa0528730:intron
CATTGTAGACAAACCAAAGG+AGG 0.615228 4_1:+1671194 Msa0528730:CDS
TTCACCACCATAAATCTCAC+CGG 0.615230 4_1:-1670444 None:intergenic
ACTGTTGTTTGTATCTCTTG+AGG 0.620279 4_1:-1671849 Msa0528740:three_prime_UTR
GGTGAAAGTGGTGATGTCCT+TGG 0.620946 4_1:-1671928 Msa0528740:three_prime_UTR
TCATTTGACCAGCTAACAGG+AGG 0.621119 4_1:-1669332 None:intergenic
CATTCAATCAACCTTTAAAG+GGG 0.622188 4_1:-1671764 Msa0528740:three_prime_UTR
GAAGCTGGTGAATGAGGGTG+AGG 0.622694 4_1:-1667190 None:intergenic
AGGAATTGAGGAACAAGGTG+AGG 0.623145 4_1:-1667059 None:intergenic
ACCTAAGGCTTGCATAACCA+AGG 0.627242 4_1:-1670390 None:intergenic
GGTTGTGTGATAACCAGCAA+GGG 0.628035 4_1:+1672376 Msa0528730:three_prime_UTR
TGGTTGTGTGATAACCAGCA+AGG 0.629031 4_1:+1672375 Msa0528730:three_prime_UTR
GTATATATCACACAACTCAA+CGG 0.629814 4_1:+1667645 Msa0528730:CDS
GAAAAGTGGATACTCGACCC+TGG 0.636896 4_1:+1669304 Msa0528730:CDS
AGCAGTCGGAATAAGAGAAG+GGG 0.636940 4_1:-1672058 Msa0528740:three_prime_UTR
AATCATTGTAGACAAACCAA+AGG 0.637419 4_1:+1671191 Msa0528730:CDS
ATTCAGATACTTCGCGAGAG+GGG 0.637675 4_1:+1669934 Msa0528730:CDS
GAACTGCTGTAACTCATCAA+GGG 0.638982 4_1:-1670789 None:intergenic
GAAGCATCCCTTCTGGAAGA+GGG 0.639736 4_1:+1672549 Msa0528730:three_prime_UTR
ATACTAGCTCCTCATTATCA+CGG 0.640006 4_1:+1672429 Msa0528730:three_prime_UTR
ATATAAGGAATTGAGGAACA+AGG 0.641155 4_1:-1667064 None:intergenic
TCTGAAGAAAGGAGATCCCA+GGG 0.644505 4_1:+1670338 Msa0528730:CDS
TGTCAAAGGACATAGACCCT+GGG 0.644623 4_1:-1670354 None:intergenic
TTTGTTCAACCATTGTGCTG+TGG 0.645471 4_1:+1667552 Msa0528730:CDS
TGGTTGTGAAAAGTGTGTGA+AGG 0.647524 4_1:+1667384 Msa0528730:five_prime_UTR
CTGTAGTCACTCTGGCACTG+TGG 0.648083 4_1:+1673206 Msa0528730:three_prime_UTR
TGATTCAGATACTTCGCGAG+AGG 0.649037 4_1:+1669932 Msa0528730:CDS
ATTCCCTTCATGGAGAGAGA+AGG 0.650807 4_1:+1670307 Msa0528730:CDS
TGAAGGTTATGGTGATGAAG+TGG 0.651256 4_1:+1667401 Msa0528730:five_prime_UTR
CTTGCAGGAAGTAGAATGGG+AGG 0.651294 4_1:-1667701 None:intergenic
GTAATGGGTTGTAATAATTG+TGG 0.651529 4_1:+1671717 Msa0528730:three_prime_UTR
ATAACCGCCCTCTTCCAGAA+GGG 0.651691 4_1:-1672556 Msa0528740:three_prime_UTR
TGATTCCAATAAGAAAGCAT+CGG 0.654051 4_1:+1672496 Msa0528730:three_prime_UTR
AATATAACATCTCCTTGAGG+AGG 0.657753 4_1:-1667668 None:intergenic
TAAGTGCCTGGTAATTAACA+CGG 0.657828 4_1:-1669873 None:intergenic
ATGGAAGTTAGATCATCAGA+GGG 0.666260 4_1:+1667446 Msa0528730:CDS
TTGCACTAATGAAGAAGCCG+AGG 0.669813 4_1:+1670023 Msa0528730:CDS
TCTGAGATTAGTAGCACTAG+GGG 0.673869 4_1:-1672522 Msa0528740:three_prime_UTR
CTGTTCAGAGACTCCATCTG+GGG 0.675062 4_1:-1672473 Msa0528740:three_prime_UTR
CAAACATGTCCACAGCACAA+TGG 0.677892 4_1:-1667561 None:intergenic
TGTGTGATAACCAGCAAGGG+CGG 0.678647 4_1:+1672379 Msa0528730:three_prime_UTR
AAGAAGCCGAGGATCTCAAG+CGG 0.678663 4_1:+1670034 Msa0528730:CDS
GCTAACAGGAGGCATCTCCA+GGG 0.682429 4_1:-1669321 None:intergenic
ATTGCATCTGAGATATGAGA+TGG 0.683390 4_1:+1669969 Msa0528730:CDS
ATGCATACACCTTGACACTG+GGG 0.698561 4_1:-1672667 Msa0528740:three_prime_UTR
TCTATGTCCTTTGACACCGG+AGG 0.698582 4_1:+1670361 Msa0528730:CDS
GCAAATATAACATCTCCTTG+AGG 0.698776 4_1:-1667671 None:intergenic
GTTCCGGAACAACCAATGTG+AGG 0.701296 4_1:-1669071 None:intergenic
GCATCCCTTCTGGAAGAGGG+CGG 0.703925 4_1:+1672552 Msa0528730:three_prime_UTR
GCAGCCGGTGAGATTTATGG+TGG 0.721413 4_1:+1670440 Msa0528730:CDS
GAGTAAATAGATACCTGCGG+TGG 0.724695 4_1:-1670916 None:intergenic
CTGAGATTAGTAGCACTAGG+GGG 0.740933 4_1:-1672521 Msa0528740:three_prime_UTR
TGAGGAGCTAGTATGCAAAG+CGG 0.776917 4_1:-1672420 Msa0528740:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTAAAAGACTTTAA+CGG + chr4_1:1666781-1666800 Msa0528730:five_prime_UTR 10.0%
!!! TTTTAAGAAAGAAAAATATA+AGG - chr4_1:1667082-1667101 None:intergenic 10.0%
!!! AATAAGATATATATTTCTTT+TGG - chr4_1:1671005-1671024 None:intergenic 10.0%
!! ATAGAAATTTCAAATAATCT+TGG - chr4_1:1666710-1666729 None:intergenic 15.0%
!! AAAAAAAGAGATTACAAAAT+GGG - chr4_1:1666749-1666768 None:intergenic 15.0%
!! ATTTAGCAATAATAGTAATA+TGG + chr4_1:1667853-1667872 Msa0528730:intron 15.0%
!!! TTAACTTTAAAAAGTAACTA+TGG - chr4_1:1667967-1667986 None:intergenic 15.0%
!!! TAAATGGATTTATTGATTTT+TGG - chr4_1:1668392-1668411 None:intergenic 15.0%
!!! AATTTTCCTTTAAATATGAT+AGG + chr4_1:1668543-1668562 Msa0528730:intron 15.0%
!!! AAAGTTGTTTTTTTTTATTC+TGG + chr4_1:1669185-1669204 Msa0528730:intron 15.0%
!! TGAAAAGATATACATAAAAA+AGG - chr4_1:1670092-1670111 None:intergenic 15.0%
!!! ATATTTCTTTTGGAAATTTA+GGG - chr4_1:1670995-1671014 None:intergenic 15.0%
!!! TATATTTCTTTTGGAAATTT+AGG - chr4_1:1670996-1671015 None:intergenic 15.0%
!!! TTTTGTATACATTATTTTGT+AGG + chr4_1:1671416-1671435 Msa0528730:three_prime_UTR 15.0%
!! GAAAAAAAGAGATTACAAAA+TGG - chr4_1:1666750-1666769 None:intergenic 20.0%
!!! ATTTTTATTCACATTCAAGT+GGG - chr4_1:1666979-1666998 None:intergenic 20.0%
!! AAGAAAAATATAAGGAATTG+AGG - chr4_1:1667074-1667093 None:intergenic 20.0%
!! TTGCTAAATTAAATCATATG+TGG - chr4_1:1667842-1667861 None:intergenic 20.0%
!! TTAAACATATGATTAGTAGT+TGG + chr4_1:1667983-1668002 Msa0528730:intron 20.0%
!! TAAACATATGATTAGTAGTT+GGG + chr4_1:1667984-1668003 Msa0528730:intron 20.0%
!! TCTAAAAAAAACACAATGTT+AGG - chr4_1:1668055-1668074 None:intergenic 20.0%
!!! AACATTGTGTTTTTTTTAGA+TGG + chr4_1:1668055-1668074 Msa0528730:intron 20.0%
!! AAAAAAAATTCTTTCCCAAA+GGG - chr4_1:1668131-1668150 None:intergenic 20.0%
!! AAAAAAAAATTCTTTCCCAA+AGG - chr4_1:1668132-1668151 None:intergenic 20.0%
!!! TTTTCTGTTTGTTATATAGT+AGG + chr4_1:1668159-1668178 Msa0528730:intron 20.0%
!!! CAACAATAGTTTAAAATAAG+TGG - chr4_1:1668468-1668487 None:intergenic 20.0%
!!! AAAGTACCTATCATATTTAA+AGG - chr4_1:1668552-1668571 None:intergenic 20.0%
!! ACATAAGTAAGTGTAATATT+GGG - chr4_1:1668693-1668712 None:intergenic 20.0%
!! AACATAAGTAAGTGTAATAT+TGG - chr4_1:1668694-1668713 None:intergenic 20.0%
!! ATATAATAGGAATAAAGAAG+TGG - chr4_1:1668976-1668995 None:intergenic 20.0%
!! ATTGAAGCTTATCATATAAT+AGG - chr4_1:1668989-1669008 None:intergenic 20.0%
!! TTATGTATAATACATCAATC+AGG + chr4_1:1669409-1669428 Msa0528730:intron 20.0%
!!! TTTAGAGTTATTATCAGATA+TGG + chr4_1:1669511-1669530 Msa0528730:intron 20.0%
!!! AAAAGTACAAGTTTATGATA+TGG + chr4_1:1669577-1669596 Msa0528730:intron 20.0%
!!! TAGTATTTTAGCAACTAAAA+TGG + chr4_1:1669608-1669627 Msa0528730:intron 20.0%
!! ATATGTACTACTGAAAATAA+GGG - chr4_1:1669722-1669741 None:intergenic 20.0%
!! TATATGTACTACTGAAAATA+AGG - chr4_1:1669723-1669742 None:intergenic 20.0%
!! TCAATACTATAAACAAAAAG+GGG - chr4_1:1670535-1670554 None:intergenic 20.0%
!! GTCAATACTATAAACAAAAA+GGG - chr4_1:1670536-1670555 None:intergenic 20.0%
!! TGTCAATACTATAAACAAAA+AGG - chr4_1:1670537-1670556 None:intergenic 20.0%
!!! TTTACTTTAGGTTAAAAAAG+AGG + chr4_1:1670757-1670776 Msa0528730:intron 20.0%
!!! TTTTAAAAAGTCCATCTTAT+TGG + chr4_1:1671047-1671066 Msa0528730:CDS 20.0%
!! TTATACAACTATACTGAATT+TGG - chr4_1:1671535-1671554 Msa0528740:three_prime_UTR 20.0%
!! TGTAATGAAATATATAGACA+CGG + chr4_1:1672263-1672282 Msa0528730:intron 20.0%
!!! TGCTTTTGTTTAAATCATAT+TGG + chr4_1:1672741-1672760 Msa0528730:three_prime_UTR 20.0%
!!! ATTTTAAAAGACTTTAACGG+TGG + chr4_1:1666784-1666803 Msa0528730:five_prime_UTR 25.0%
!!! AATTTTCTTTCTAGTTAACC+TGG + chr4_1:1666813-1666832 Msa0528730:five_prime_UTR 25.0%
!! CATTTTTATTCACATTCAAG+TGG - chr4_1:1666980-1666999 None:intergenic 25.0%
!! TTGCAGATTTGTGTTAATTT+TGG + chr4_1:1667364-1667383 Msa0528730:intron 25.0%
! AGTAAATCCAGTAAAGAAAT+TGG - chr4_1:1667621-1667640 None:intergenic 25.0%
! ATGGATTTAATGCATATTCA+CGG + chr4_1:1667872-1667891 Msa0528730:intron 25.0%
!! CAAACATTTTTAATGATCTG+AGG - chr4_1:1667937-1667956 None:intergenic 25.0%
! AAACATATGATTAGTAGTTG+GGG + chr4_1:1667985-1668004 Msa0528730:intron 25.0%
!!! GATTTTTGGTTAGAATCTAA+TGG - chr4_1:1668378-1668397 None:intergenic 25.0%
! CATAAGTAAGTGTAATATTG+GGG - chr4_1:1668692-1668711 None:intergenic 25.0%
! ACAAAATACTTATACGTAGA+TGG + chr4_1:1668766-1668785 Msa0528730:intron 25.0%
! CAAAATACTTATACGTAGAT+GGG + chr4_1:1668767-1668786 Msa0528730:intron 25.0%
! CAATGTTTAATTACCAGATT+TGG + chr4_1:1669005-1669024 Msa0528730:intron 25.0%
!! AACTTGATAAGAAATCCTTT+TGG + chr4_1:1669091-1669110 Msa0528730:CDS 25.0%
!! ACTTGATAAGAAATCCTTTT+GGG + chr4_1:1669092-1669111 Msa0528730:CDS 25.0%
! CATAACAAATGATATACCTA+CGG - chr4_1:1669122-1669141 None:intergenic 25.0%
!! CTTTTCCTAGTAAACTTTTT+GGG - chr4_1:1669290-1669309 None:intergenic 25.0%
!! ACTTTTCCTAGTAAACTTTT+TGG - chr4_1:1669291-1669310 None:intergenic 25.0%
! AAAAAGTTTACTAGGAAAAG+TGG + chr4_1:1669290-1669309 Msa0528730:CDS 25.0%
!!! GTCAAATGAAAAGTATTACT+TGG + chr4_1:1669346-1669365 Msa0528730:CDS 25.0%
! TTAAAGTTTGATACAGTGAT+TGG + chr4_1:1669451-1669470 Msa0528730:intron 25.0%
! TGGTTAATGATTCTTTGATA+TGG + chr4_1:1669471-1669490 Msa0528730:intron 25.0%
!!! AACATAGATAAAGTGCTTTT+TGG - chr4_1:1669663-1669682 None:intergenic 25.0%
! TAAGTTTCTGTAGATCAATT+GGG - chr4_1:1669849-1669868 None:intergenic 25.0%
!! TATATCTTTTCATGAGCAAT+AGG + chr4_1:1670100-1670119 Msa0528730:intron 25.0%
! GCAACACAAATTATAAAAGA+AGG - chr4_1:1670127-1670146 None:intergenic 25.0%
! CAATACTATAAACAAAAAGG+GGG - chr4_1:1670534-1670553 None:intergenic 25.0%
! ATTCCACTTTACTTTACTTT+AGG + chr4_1:1670745-1670764 Msa0528730:intron 25.0%
! TAACCTAAAGTAAAGTAAAG+TGG - chr4_1:1670751-1670770 None:intergenic 25.0%
!! TTAGGTTAAAAAAGAGGTAT+TGG + chr4_1:1670763-1670782 Msa0528730:intron 25.0%
! ATCTAATATAGAAGCTATTC+TGG + chr4_1:1670956-1670975 Msa0528730:intron 25.0%
!!! TAAGATGGACTTTTTAAAAC+CGG - chr4_1:1671046-1671065 Msa0528740:three_prime_UTR 25.0%
!!! ATTATTTTGTAGGAAACCAT+GGG + chr4_1:1671426-1671445 Msa0528730:three_prime_UTR 25.0%
! GAAATATATGTTCCATATAG+AGG + chr4_1:1671465-1671484 Msa0528730:three_prime_UTR 25.0%
!!! AAGATTAGAAGTATTTTGCA+AGG + chr4_1:1671902-1671921 Msa0528730:three_prime_UTR 25.0%
! AGTTGGAATATTATCAAGAA+AGG - chr4_1:1671978-1671997 Msa0528740:three_prime_UTR 25.0%
!! TTTCTTGATAATATTCCAAC+TGG + chr4_1:1671977-1671996 Msa0528730:three_prime_UTR 25.0%
! GGTAATAAACTATACATTCA+GGG - chr4_1:1672348-1672367 Msa0528740:intron 25.0%
! AGGTAATAAACTATACATTC+AGG - chr4_1:1672349-1672368 Msa0528740:intron 25.0%
! ATAGTTTATTACCTGTTCAA+TGG + chr4_1:1672355-1672374 Msa0528730:intron 25.0%
! ATGAAAAGAAACATATGAAG+AGG + chr4_1:1673072-1673091 Msa0528730:intron 25.0%
!!! CAGTTTTTTAATTGTGTGCA+TGG - chr4_1:1666871-1666890 None:intergenic 30.0%
ATGGAAAGAAAGGATCAAAT+CGG - chr4_1:1667028-1667047 None:intergenic 30.0%
ATATAAGGAATTGAGGAACA+AGG - chr4_1:1667067-1667086 None:intergenic 30.0%
GAATAAACCAAACACGAAAA+CGG - chr4_1:1667529-1667548 None:intergenic 30.0%
GTATATATCACACAACTCAA+CGG + chr4_1:1667645-1667664 Msa0528730:CDS 30.0%
! AGATAGAAAAACTAACTTGC+AGG - chr4_1:1667719-1667738 None:intergenic 30.0%
!! AATGTTTTTGTTTGCTTGAG+TGG + chr4_1:1667760-1667779 Msa0528730:intron 30.0%
! TATGTGTTGATAAACCCTTT+GGG + chr4_1:1668114-1668133 Msa0528730:intron 30.0%
ATTTGTGTGAAGAATCAGTT+AGG + chr4_1:1668189-1668208 Msa0528730:intron 30.0%
GATGGTCAATATCAACTAAT+TGG - chr4_1:1668248-1668267 None:intergenic 30.0%
! GGAAGTACAAAAAAACATGA+TGG - chr4_1:1668266-1668285 None:intergenic 30.0%
CAAAGCAAATAATCTCTAAC+AGG - chr4_1:1668287-1668306 None:intergenic 30.0%
AGACTTCACTCTAAACTAAA+TGG - chr4_1:1668408-1668427 None:intergenic 30.0%
!!! ATAAGTGGATCCACTTTTTT+GGG - chr4_1:1668453-1668472 None:intergenic 30.0%
!!! AATAAGTGGATCCACTTTTT+TGG - chr4_1:1668454-1668473 None:intergenic 30.0%
AAATTCTACTGAACAGCTAA+AGG - chr4_1:1668528-1668547 None:intergenic 30.0%
TATATACAAGGACTCATACA+GGG - chr4_1:1668617-1668636 None:intergenic 30.0%
TTATATACAAGGACTCATAC+AGG - chr4_1:1668618-1668637 None:intergenic 30.0%
TGATGGGGATATTATATACA+AGG - chr4_1:1668629-1668648 None:intergenic 30.0%
GCAGGAAATTATACTAGTAA+TGG + chr4_1:1668879-1668898 Msa0528730:intron 30.0%
TAATAGGAATAAAGAAGTGG+TGG - chr4_1:1668973-1668992 None:intergenic 30.0%
AAGGATTTCTTATCAAGTTC+CGG - chr4_1:1669090-1669109 None:intergenic 30.0%
!!! GTTTTTTTTTATTCTGGCAG+TGG + chr4_1:1669191-1669210 Msa0528730:intron 30.0%
GTACAAGTTTATGATATGGA+TGG + chr4_1:1669581-1669600 Msa0528730:intron 30.0%
TACTACTGAAAATAAGGGAA+GGG - chr4_1:1669717-1669736 None:intergenic 30.0%
CTAAGTTTCTGTAGATCAAT+TGG - chr4_1:1669850-1669869 None:intergenic 30.0%
CAATTGATCTACAGAAACTT+AGG + chr4_1:1669848-1669867 Msa0528730:CDS 30.0%
! TAAAAAAGGCATAGCAAAAC+AGG - chr4_1:1670078-1670097 None:intergenic 30.0%
!! GTTGCATGATTTGTTGAATT+TGG + chr4_1:1670142-1670161 Msa0528730:intron 30.0%
! ATTAAGAGTCTTGTGTTCAA+AGG + chr4_1:1670209-1670228 Msa0528730:intron 30.0%
! AATGGTGAACTCACAATTTT+TGG - chr4_1:1670500-1670519 None:intergenic 30.0%
GGGAGGATACAAATTATAAA+TGG - chr4_1:1670621-1670640 None:intergenic 30.0%
TTAGGATGAAGAAATGCATA+AGG - chr4_1:1670700-1670719 None:intergenic 30.0%
TTGCTTGATATGCATCAAAA+TGG + chr4_1:1671090-1671109 Msa0528730:CDS 30.0%
AATCATTGTAGACAAACCAA+AGG + chr4_1:1671191-1671210 Msa0528730:CDS 30.0%
!! CATTATTTTGTAGGAAACCA+TGG + chr4_1:1671425-1671444 Msa0528730:three_prime_UTR 30.0%
!! TTATTTTGTAGGAAACCATG+GGG + chr4_1:1671427-1671446 Msa0528730:three_prime_UTR 30.0%
!! CTATTTTTCTTTTTTCCCCA+TGG - chr4_1:1671445-1671464 Msa0528740:three_prime_UTR 30.0%
CATGGGGAAAAAAGAAAAAT+AGG + chr4_1:1671443-1671462 Msa0528730:three_prime_UTR 30.0%
ACAACTATACTGAATTTGGT+GGG - chr4_1:1671531-1671550 Msa0528740:three_prime_UTR 30.0%
TACAACTATACTGAATTTGG+TGG - chr4_1:1671532-1671551 Msa0528740:three_prime_UTR 30.0%
GTTCATTCTCTATGTAATCA+CGG + chr4_1:1671600-1671619 Msa0528730:three_prime_UTR 30.0%
!! GTAATGGGTTGTAATAATTG+TGG + chr4_1:1671717-1671736 Msa0528730:three_prime_UTR 30.0%
! CATTCAATCAACCTTTAAAG+GGG - chr4_1:1671767-1671786 Msa0528740:three_prime_UTR 30.0%
GCATTCAATCAACCTTTAAA+GGG - chr4_1:1671768-1671787 Msa0528740:three_prime_UTR 30.0%
TGCATTCAATCAACCTTTAA+AGG - chr4_1:1671769-1671788 Msa0528740:three_prime_UTR 30.0%
AACAACAGTATGTCATTAAC+TGG + chr4_1:1671863-1671882 Msa0528730:three_prime_UTR 30.0%
CAAAATACTTCTAATCTTGC+AGG - chr4_1:1671900-1671919 Msa0528740:three_prime_UTR 30.0%
TGGAATATTATCAAGAAAGG+AGG - chr4_1:1671975-1671994 Msa0528740:three_prime_UTR 30.0%
! TTGCATTTTACGTAGTACAT+GGG - chr4_1:1672197-1672216 Msa0528740:intron 30.0%
! ATTGCATTTTACGTAGTACA+TGG - chr4_1:1672198-1672217 Msa0528740:intron 30.0%
TATTCTCATTACCATCATGT+TGG + chr4_1:1672320-1672339 Msa0528730:intron 30.0%
! TGATTCCAATAAGAAAGCAT+CGG + chr4_1:1672496-1672515 Msa0528730:three_prime_UTR 30.0%
TCTACTTTGTCGTCAAAAAA+AGG + chr4_1:1672629-1672648 Msa0528730:three_prime_UTR 30.0%
CTACTTTGTCGTCAAAAAAA+GGG + chr4_1:1672630-1672649 Msa0528730:three_prime_UTR 30.0%
! TTTTCATGCTTCTCAATTCT+TGG - chr4_1:1672814-1672833 Msa0528740:three_prime_UTR 30.0%
! ATGCTTCTTTTTCCTTGATA+TGG + chr4_1:1672932-1672951 Msa0528730:three_prime_UTR 30.0%
AATTGTGTGCATGGATTCAA+AGG - chr4_1:1666862-1666881 None:intergenic 35.0%
TCGGAGAAAAATCACAAAGA+AGG - chr4_1:1667009-1667028 None:intergenic 35.0%
TCCTTTCTTTCCATTCTCAT+TGG + chr4_1:1667034-1667053 Msa0528730:five_prime_UTR 35.0%
TCCAATGAGAATGGAAAGAA+AGG - chr4_1:1667038-1667057 None:intergenic 35.0%
TTGAAGAGCTTCAAATTCTG+TGG + chr4_1:1667133-1667152 Msa0528730:five_prime_UTR 35.0%
CAAATTCTGTGGACACAATT+TGG + chr4_1:1667144-1667163 Msa0528730:five_prime_UTR 35.0%
! AATTTGAAGCTGGTGAATGA+GGG - chr4_1:1667198-1667217 None:intergenic 35.0%
ACCAGCTTCAAATTCAATTC+TGG + chr4_1:1667204-1667223 Msa0528730:five_prime_UTR 35.0%
CCAGCTTCAAATTCAATTCT+GGG + chr4_1:1667205-1667224 Msa0528730:five_prime_UTR 35.0%
CTTCAAATTCAATTCTGGGT+CGG + chr4_1:1667209-1667228 Msa0528730:five_prime_UTR 35.0%
! AAGTGAATCTCACTGTTTTG+AGG - chr4_1:1667254-1667273 None:intergenic 35.0%
TCACTTTGTTGCAGTGTTTA+AGG + chr4_1:1667268-1667287 Msa0528730:five_prime_UTR 35.0%
TACATTGCAAAGTGACTCTA+TGG - chr4_1:1667310-1667329 None:intergenic 35.0%
! TGAAAAGTGTGTGAAGGTTA+TGG + chr4_1:1667390-1667409 Msa0528730:five_prime_UTR 35.0%
TGAAGTGTGTGACAAAGAAA+TGG + chr4_1:1667427-1667446 Msa0528730:exon 35.0%
AATGGAAGTTAGATCATCAG+AGG + chr4_1:1667445-1667464 Msa0528730:exon 35.0%
ATGGAAGTTAGATCATCAGA+GGG + chr4_1:1667446-1667465 Msa0528730:CDS 35.0%
TGGCATTCCAATTTCTTTAC+TGG + chr4_1:1667611-1667630 Msa0528730:CDS 35.0%
AATATAACATCTCCTTGAGG+AGG - chr4_1:1667671-1667690 None:intergenic 35.0%
GCAAATATAACATCTCCTTG+AGG - chr4_1:1667674-1667693 None:intergenic 35.0%
! TAACTTGCAGGAAGTAGAAT+GGG - chr4_1:1667707-1667726 None:intergenic 35.0%
ATCATGCTTAGCTGAATGTT+GGG + chr4_1:1668083-1668102 Msa0528730:intron 35.0%
! GTATGTGTTGATAAACCCTT+TGG + chr4_1:1668113-1668132 Msa0528730:intron 35.0%
!! ATTTGCTTTGTTGCGTTTTG+TGG + chr4_1:1668297-1668316 Msa0528730:intron 35.0%
GGGGTACACTAAAAAGATTA+GGG - chr4_1:1668433-1668452 None:intergenic 35.0%
TGGGGTACACTAAAAAGATT+AGG - chr4_1:1668434-1668453 None:intergenic 35.0%
TTTAGTGTACCCCAAAAAAG+TGG + chr4_1:1668440-1668459 Msa0528730:intron 35.0%
!!! TAAGTGGATCCACTTTTTTG+GGG - chr4_1:1668452-1668471 None:intergenic 35.0%
! TACTTATACGTAGATGGGTT+TGG + chr4_1:1668772-1668791 Msa0528730:intron 35.0%
! TAAAGAAGTGGTGGAAGAAT+AGG - chr4_1:1668964-1668983 None:intergenic 35.0%
! CAAATCTGAAATGCCAAATC+TGG - chr4_1:1669021-1669040 None:intergenic 35.0%
GAGTTCCCAAAAAGTTTACT+AGG + chr4_1:1669282-1669301 Msa0528730:CDS 35.0%
! TTTTCATTTGACCAGCTAAC+AGG - chr4_1:1669338-1669357 None:intergenic 35.0%
!! TGAAAAGTATTACTTGGAGC+AGG + chr4_1:1669352-1669371 Msa0528730:CDS 35.0%
ACTACTGAAAATAAGGGAAG+GGG - chr4_1:1669716-1669735 None:intergenic 35.0%
GTACTACTGAAAATAAGGGA+AGG - chr4_1:1669718-1669737 None:intergenic 35.0%
TAAGTGCCTGGTAATTAACA+CGG - chr4_1:1669876-1669895 None:intergenic 35.0%
! ATTGCATCTGAGATATGAGA+TGG + chr4_1:1669969-1669988 Msa0528730:CDS 35.0%
GTAATGATCTGACAAATGAG+AGG + chr4_1:1670237-1670256 Msa0528730:intron 35.0%
AGGAAATAGTGTCTGAAGAA+AGG + chr4_1:1670327-1670346 Msa0528730:CDS 35.0%
ACTATAAACAAAAAGGGGGA+GGG - chr4_1:1670530-1670549 None:intergenic 35.0%
TACTATAAACAAAAAGGGGG+AGG - chr4_1:1670531-1670550 None:intergenic 35.0%
GCATTTCTTCATCCTAATCA+TGG + chr4_1:1670703-1670722 Msa0528730:intron 35.0%
AACAAGCAGTAACCATGATT+AGG - chr4_1:1670718-1670737 None:intergenic 35.0%
! CCATCTGTGATGAATGATTT+TGG - chr4_1:1670814-1670833 None:intergenic 35.0%
CCAAAATCATTCATCACAGA+TGG + chr4_1:1670811-1670830 Msa0528730:CDS 35.0%
! TGCTTTGGATTTCATGGTTT+CGG + chr4_1:1670835-1670854 Msa0528730:CDS 35.0%
ACCTTTATTCCTACCTATGA+TGG + chr4_1:1670869-1670888 Msa0528730:CDS 35.0%
CCTTTATTCCTACCTATGAT+GGG + chr4_1:1670870-1670889 Msa0528730:CDS 35.0%
AAAAGTCCATCTTATTGGAC+CGG + chr4_1:1671052-1671071 Msa0528730:CDS 35.0%
TACAAACTCATTCCATGGAA+GGG - chr4_1:1671118-1671137 Msa0528740:three_prime_UTR 35.0%
ACAATGATTCGACGATAAGT+CGG - chr4_1:1671180-1671199 Msa0528740:three_prime_UTR 35.0%
TAGAAATAATCCTCCTCCTT+TGG - chr4_1:1671210-1671229 Msa0528740:three_prime_UTR 35.0%
!! ACAAAGTGTGATGATTTGCT+AGG + chr4_1:1671261-1671280 Msa0528730:CDS 35.0%
CTTACTTGAGTAGAGTTATG+AGG - chr4_1:1671288-1671307 Msa0528740:three_prime_UTR 35.0%
AGATTGCTCTTGCATACTTA+TGG - chr4_1:1671357-1671376 Msa0528740:three_prime_UTR 35.0%
ATGCAAGAGCAATCTGAAAA+TGG + chr4_1:1671362-1671381 Msa0528730:three_prime_UTR 35.0%
TTTGGTGGGGGAAAAAATAA+GGG - chr4_1:1671517-1671536 Msa0528740:three_prime_UTR 35.0%
! ATTTGGTGGGGGAAAAAATA+AGG - chr4_1:1671518-1671537 Msa0528740:three_prime_UTR 35.0%
! AACTATACTGAATTTGGTGG+GGG - chr4_1:1671529-1671548 Msa0528740:three_prime_UTR 35.0%
! CAACTATACTGAATTTGGTG+GGG - chr4_1:1671530-1671549 Msa0528740:three_prime_UTR 35.0%
GGATGAAAAAACTGAACACT+TGG - chr4_1:1671831-1671850 Msa0528740:three_prime_UTR 35.0%
! ACTGTTGTTTGTATCTCTTG+AGG - chr4_1:1671852-1671871 Msa0528740:three_prime_UTR 35.0%
AAGAGGCAAATCTAGATTCA+AGG - chr4_1:1672092-1672111 Msa0528740:three_prime_UTR 35.0%
GAACAAAGCATACAAATTGC+AGG - chr4_1:1672127-1672146 Msa0528740:intron 35.0%
GTACTACGTAAAATGCAATG+AGG + chr4_1:1672199-1672218 Msa0528730:intron 35.0%
TTATCACACAACCATTGAAC+AGG - chr4_1:1672369-1672388 Msa0528740:three_prime_UTR 35.0%
ATACTAGCTCCTCATTATCA+CGG + chr4_1:1672429-1672448 Msa0528730:three_prime_UTR 35.0%
! ATCTGAGATTAGTAGCACTA+GGG - chr4_1:1672526-1672545 Msa0528740:three_prime_UTR 35.0%
! TATCTGAGATTAGTAGCACT+AGG - chr4_1:1672527-1672546 Msa0528740:three_prime_UTR 35.0%
! AGTGCTACTAATCTCAGATA+TGG + chr4_1:1672527-1672546 Msa0528730:three_prime_UTR 35.0%
TATGCATATCGATCTGCATT+TGG + chr4_1:1672683-1672702 Msa0528730:three_prime_UTR 35.0%
AAACAAAAGCAATGCAGAGT+TGG - chr4_1:1672732-1672751 Msa0528740:three_prime_UTR 35.0%
!!! CAGTTGGTAACTTTTACTGT+AGG - chr4_1:1672774-1672793 Msa0528740:three_prime_UTR 35.0%
GATCATGCTTATGAAGTCAA+AGG - chr4_1:1673184-1673203 Msa0528740:CDS 35.0%
GCAAGCAAGTTCTTCATCAT+TGG - chr4_1:1666671-1666690 None:intergenic 40.0%
GTAGATGAATTGAGAGATCC+AGG - chr4_1:1666834-1666853 None:intergenic 40.0%
GTGCATGGATTCAAAGGTTT+GGG - chr4_1:1666856-1666875 None:intergenic 40.0%
TGTGCATGGATTCAAAGGTT+TGG - chr4_1:1666857-1666876 None:intergenic 40.0%
ATTCTGTGGACACAATTTGG+TGG + chr4_1:1667147-1667166 Msa0528730:five_prime_UTR 40.0%
! GAATTTGAAGCTGGTGAATG+AGG - chr4_1:1667199-1667218 None:intergenic 40.0%
! CCCAGAATTGAATTTGAAGC+TGG - chr4_1:1667208-1667227 None:intergenic 40.0%
TGCAAAGTGACTCTATGGAA+AGG - chr4_1:1667305-1667324 None:intergenic 40.0%
CAATGTACTTCTTACGTACG+AGG + chr4_1:1667323-1667342 Msa0528730:intron 40.0%
! TGGTTGTGAAAAGTGTGTGA+AGG + chr4_1:1667384-1667403 Msa0528730:five_prime_UTR 40.0%
! TGAAGGTTATGGTGATGAAG+TGG + chr4_1:1667401-1667420 Msa0528730:five_prime_UTR 40.0%
TTTGTTCAACCATTGTGCTG+TGG + chr4_1:1667552-1667571 Msa0528730:CDS 40.0%
TTGTGACTGTGAGTGAACTA+TGG + chr4_1:1667591-1667610 Msa0528730:CDS 40.0%
! CTAACTTGCAGGAAGTAGAA+TGG - chr4_1:1667708-1667727 None:intergenic 40.0%
!!! AGTGGTTTTGTGATGTGGTT+TGG + chr4_1:1667778-1667797 Msa0528730:intron 40.0%
GGTTTGGAAATGTGTAGCTT+TGG + chr4_1:1667794-1667813 Msa0528730:intron 40.0%
GATCATGCTTAGCTGAATGT+TGG + chr4_1:1668082-1668101 Msa0528730:intron 40.0%
TCATGCTTAGCTGAATGTTG+GGG + chr4_1:1668084-1668103 Msa0528730:intron 40.0%
!! ATAACAGCCAAGTACTGAGT+AGG + chr4_1:1668328-1668347 Msa0528730:intron 40.0%
!! TAACAGCCAAGTACTGAGTA+GGG + chr4_1:1668329-1668348 Msa0528730:intron 40.0%
ATCTATCCCTACTCAGTACT+TGG - chr4_1:1668338-1668357 None:intergenic 40.0%
CTCATACAGGGTCATTGAAA+TGG - chr4_1:1668605-1668624 None:intergenic 40.0%
TTTCTGCTGGAGAGATTGAT+GGG - chr4_1:1668645-1668664 None:intergenic 40.0%
! GACTCTTATTTGCTTTCTGC+TGG - chr4_1:1668658-1668677 None:intergenic 40.0%
!! TTTCTAAGAGTGTCCTGCAA+TGG + chr4_1:1668903-1668922 Msa0528730:CDS 40.0%
!! TTCTAAGAGTGTCCTGCAAT+GGG + chr4_1:1668904-1668923 Msa0528730:CDS 40.0%
TTTGAATCAAATGCGTGCAG+CGG + chr4_1:1668929-1668948 Msa0528730:CDS 40.0%
GGCATTTCAGATTTGTGACA+TGG + chr4_1:1669026-1669045 Msa0528730:intron 40.0%
TACGTAGCTTAACCCAAAGT+TGG + chr4_1:1669635-1669654 Msa0528730:intron 40.0%
!! TGCTTTTTGGCACCAACTTT+GGG - chr4_1:1669650-1669669 None:intergenic 40.0%
TACTGAAAATAAGGGAAGGG+GGG - chr4_1:1669714-1669733 None:intergenic 40.0%
CTACTGAAAATAAGGGAAGG+GGG - chr4_1:1669715-1669734 None:intergenic 40.0%
ACCTTGTGTTTGGCAAAAAG+CGG - chr4_1:1669781-1669800 None:intergenic 40.0%
TTGGGAGACCATTATTTGCT+AGG - chr4_1:1669831-1669850 None:intergenic 40.0%
ACCCCTCAAATTGAGAATCT+GGG + chr4_1:1669901-1669920 Msa0528730:CDS 40.0%
TCAGATATGCATTCCCTTCA+TGG + chr4_1:1670297-1670316 Msa0528730:intron 40.0%
TTTCCTTCTCTCTCCATGAA+GGG - chr4_1:1670313-1670332 None:intergenic 40.0%
ATTTCCTTCTCTCTCCATGA+AGG - chr4_1:1670314-1670333 None:intergenic 40.0%
CAATGTAAATCTGTGTCTCC+CGG - chr4_1:1670421-1670440 None:intergenic 40.0%
ACACAGATTTACATTGCAGC+CGG + chr4_1:1670425-1670444 Msa0528730:CDS 40.0%
TTCACCACCATAAATCTCAC+CGG - chr4_1:1670447-1670466 None:intergenic 40.0%
CACAAGCTAGAATCATTCAG+TGG - chr4_1:1670583-1670602 None:intergenic 40.0%
AGCACTTGGATTGAAAGTTG+TGG + chr4_1:1670649-1670668 Msa0528730:intron 40.0%
!! GAAAGTTGTGGCTCTGAAAA+TGG + chr4_1:1670661-1670680 Msa0528730:intron 40.0%
GAACTGCTGTAACTCATCAA+GGG - chr4_1:1670792-1670811 None:intergenic 40.0%
CCCATCATAGGTAGGAATAA+AGG - chr4_1:1670873-1670892 None:intergenic 40.0%
! TTTTGCCATGTTCCCATCAT+AGG - chr4_1:1670885-1670904 None:intergenic 40.0%
AACATGGCAAAACTTGTGGA+AGG + chr4_1:1670893-1670912 Msa0528730:CDS 40.0%
CGTGAGTAAATAGATACCTG+CGG - chr4_1:1670922-1670941 None:intergenic 40.0%
TATCTTATTAGCGCTCATGC+AGG + chr4_1:1671016-1671035 Msa0528730:intron 40.0%
! GCAATTGTACAAGCCTTTTC+CGG - chr4_1:1671074-1671093 Msa0528740:three_prime_UTR 40.0%
ATCAAAATGGAACCCTTCCA+TGG + chr4_1:1671103-1671122 Msa0528730:CDS 40.0%
CTACAAACTCATTCCATGGA+AGG - chr4_1:1671119-1671138 Msa0528740:three_prime_UTR 40.0%
GCATCTACAAACTCATTCCA+TGG - chr4_1:1671123-1671142 Msa0528740:three_prime_UTR 40.0%
ACAGGTTCACGAAAAGAGAA+TGG + chr4_1:1671149-1671168 Msa0528730:CDS 40.0%
CAGGTTCACGAAAAGAGAAT+GGG + chr4_1:1671150-1671169 Msa0528730:CDS 40.0%
CATTGTAGACAAACCAAAGG+AGG + chr4_1:1671194-1671213 Msa0528730:CDS 40.0%
GCTCTTGCATACTTATGGTT+GGG - chr4_1:1671352-1671371 Msa0528740:three_prime_UTR 40.0%
TGCTCTTGCATACTTATGGT+TGG - chr4_1:1671353-1671372 Msa0528740:three_prime_UTR 40.0%
CATCTTTGCAAGCCTCTATA+TGG - chr4_1:1671480-1671499 Msa0528740:three_prime_UTR 40.0%
! TTTTCCACTTTACAAGCTGC+AGG + chr4_1:1671691-1671710 Msa0528730:three_prime_UTR 40.0%
TGGGTTGTAATAATTGTGGC+CGG + chr4_1:1671721-1671740 Msa0528730:three_prime_UTR 40.0%
! CGATGATCAAGTTTTTGACC+CGG - chr4_1:1671743-1671762 Msa0528740:three_prime_UTR 40.0%
TTGATCATCGTCCCCTTTAA+AGG + chr4_1:1671753-1671772 Msa0528730:three_prime_UTR 40.0%
ATCGCAAATGTAGCCTTCTA+CGG - chr4_1:1671805-1671824 Msa0528740:three_prime_UTR 40.0%
! AGTATTTTGCAAGGTCTCCA+AGG + chr4_1:1671911-1671930 Msa0528730:three_prime_UTR 40.0%
TTATCAAGAAAGGAGGCTCA+AGG - chr4_1:1671968-1671987 Msa0528740:three_prime_UTR 40.0%
AGAATTGGAACTAGACCAGT+TGG - chr4_1:1671995-1672014 Msa0528740:three_prime_UTR 40.0%
GATCTTCGAGCAGAAAGAAT+TGG - chr4_1:1672010-1672029 Msa0528740:three_prime_UTR 40.0%
AAGGGGAAAAAATGATCCTG+CGG - chr4_1:1672044-1672063 Msa0528740:three_prime_UTR 40.0%
TAGCAGTCGGAATAAGAGAA+GGG - chr4_1:1672062-1672081 Msa0528740:three_prime_UTR 40.0%
ATAGCAGTCGGAATAAGAGA+AGG - chr4_1:1672063-1672082 Msa0528740:three_prime_UTR 40.0%
! TCTGAGATTAGTAGCACTAG+GGG - chr4_1:1672525-1672544 Msa0528740:three_prime_UTR 40.0%
TGCTGTCTGAGAAAAACCAT+TGG + chr4_1:1672595-1672614 Msa0528730:three_prime_UTR 40.0%
GTCAAAAAAAGGGTCTGACT+CGG + chr4_1:1672640-1672659 Msa0528730:three_prime_UTR 40.0%
TATGCATACACCTTGACACT+GGG - chr4_1:1672671-1672690 Msa0528740:three_prime_UTR 40.0%
ATATGCATACACCTTGACAC+TGG - chr4_1:1672672-1672691 Msa0528740:three_prime_UTR 40.0%
CACATTCATAACTGTGCAGT+TGG - chr4_1:1672790-1672809 Msa0528740:three_prime_UTR 40.0%
AAAGTTCTGCTGCAACTTTC+TGG + chr4_1:1672883-1672902 Msa0528730:three_prime_UTR 40.0%
!! CTTTCTGGCTCTGATACATT+TGG + chr4_1:1672898-1672917 Msa0528730:three_prime_UTR 40.0%
TTTCCTTGATATGGAAGAGC+TGG + chr4_1:1672941-1672960 Msa0528730:three_prime_UTR 40.0%
ATGATCATCTGTAGTCACTC+TGG + chr4_1:1673198-1673217 Msa0528730:three_prime_UTR 40.0%
AGGTGAGGATCCAATGAGAA+TGG - chr4_1:1667047-1667066 None:intergenic 45.0%
AGGAATTGAGGAACAAGGTG+AGG - chr4_1:1667062-1667081 None:intergenic 45.0%
AAGCTGCTCCTTTGATTCCA+AGG + chr4_1:1667501-1667520 Msa0528730:CDS 45.0%
AAACGGCTCCTTGGAATCAA+AGG - chr4_1:1667512-1667531 None:intergenic 45.0%
CAAACATGTCCACAGCACAA+TGG - chr4_1:1667564-1667583 None:intergenic 45.0%
CATTGTGCTGTGGACATGTT+TGG + chr4_1:1667562-1667581 Msa0528730:CDS 45.0%
!!! GCTTGAGTGGTTTTGTGATG+TGG + chr4_1:1667773-1667792 Msa0528730:intron 45.0%
GTACAGTGGAGAATCTGGAT+GGG - chr4_1:1668501-1668520 None:intergenic 45.0%
TGTACAGTGGAGAATCTGGA+TGG - chr4_1:1668502-1668521 None:intergenic 45.0%
GAGTTGTACAGTGGAGAATC+TGG - chr4_1:1668506-1668525 None:intergenic 45.0%
CAGCTAAAGGAGTTGTACAG+TGG - chr4_1:1668515-1668534 None:intergenic 45.0%
TTCTGCTGGAGAGATTGATG+GGG - chr4_1:1668644-1668663 None:intergenic 45.0%
CTTTCTGCTGGAGAGATTGA+TGG - chr4_1:1668646-1668665 None:intergenic 45.0%
! ACGTAGATGGGTTTGGTAGA+CGG + chr4_1:1668779-1668798 Msa0528730:intron 45.0%
CTGCAAGATTTCAGCTGACA+CGG - chr4_1:1668863-1668882 None:intergenic 45.0%
!! TCTAAGAGTGTCCTGCAATG+GGG + chr4_1:1668905-1668924 Msa0528730:CDS 45.0%
TTGATTCAAACCCCCATTGC+AGG - chr4_1:1668919-1668938 None:intergenic 45.0%
GTGACATGGTGACAATTGCT+CGG + chr4_1:1669040-1669059 Msa0528730:CDS 45.0%
! TCGGCTTTTGAACCTCACAT+TGG + chr4_1:1669059-1669078 Msa0528730:CDS 45.0%
! GAACCTCACATTGGTTGTTC+CGG + chr4_1:1669068-1669087 Msa0528730:CDS 45.0%
TCATTTGACCAGCTAACAGG+AGG - chr4_1:1669335-1669354 None:intergenic 45.0%
!! GTGCTTTTTGGCACCAACTT+TGG - chr4_1:1669651-1669670 None:intergenic 45.0%
TAAGGGAAGGGGGGAAATAT+AGG - chr4_1:1669705-1669724 None:intergenic 45.0%
!!! ACCGCTTTTTGCCAAACACA+AGG + chr4_1:1669777-1669796 Msa0528730:CDS 45.0%
! GCTTTTTGCCAAACACAAGG+TGG + chr4_1:1669780-1669799 Msa0528730:CDS 45.0%
GATGCACGCCTAGCAAATAA+TGG + chr4_1:1669820-1669839 Msa0528730:CDS 45.0%
! TAGGTGCCGTGTTAATTACC+AGG + chr4_1:1669867-1669886 Msa0528730:CDS 45.0%
CACCCCTCAAATTGAGAATC+TGG + chr4_1:1669900-1669919 Msa0528730:CDS 45.0%
CCCCAGATTCTCAATTTGAG+GGG - chr4_1:1669905-1669924 None:intergenic 45.0%
CCCCTCAAATTGAGAATCTG+GGG + chr4_1:1669902-1669921 Msa0528730:CDS 45.0%
GCCCCAGATTCTCAATTTGA+GGG - chr4_1:1669906-1669925 None:intergenic 45.0%
TGCCCCAGATTCTCAATTTG+AGG - chr4_1:1669907-1669926 None:intergenic 45.0%
TGATTCAGATACTTCGCGAG+AGG + chr4_1:1669932-1669951 Msa0528730:CDS 45.0%
GATTCAGATACTTCGCGAGA+GGG + chr4_1:1669933-1669952 Msa0528730:CDS 45.0%
ATTCAGATACTTCGCGAGAG+GGG + chr4_1:1669934-1669953 Msa0528730:CDS 45.0%
CTCAGATGCAATGCCACAAA+AGG - chr4_1:1669961-1669980 None:intergenic 45.0%
GAGATATGAGATGGACATGC+TGG + chr4_1:1669978-1669997 Msa0528730:CDS 45.0%
! GCTTTCTCAGGTTGTACTCT+TGG + chr4_1:1670000-1670019 Msa0528730:CDS 45.0%
TTGCACTAATGAAGAAGCCG+AGG + chr4_1:1670023-1670042 Msa0528730:CDS 45.0%
ATTCCCTTCATGGAGAGAGA+AGG + chr4_1:1670307-1670326 Msa0528730:CDS 45.0%
TCTGAAGAAAGGAGATCCCA+GGG + chr4_1:1670338-1670357 Msa0528730:CDS 45.0%
TGTCAAAGGACATAGACCCT+GGG - chr4_1:1670357-1670376 None:intergenic 45.0%
ACCTAAGGCTTGCATAACCA+AGG - chr4_1:1670393-1670412 None:intergenic 45.0%
!! TGCAAGCCTTAGGTTTTGAC+CGG + chr4_1:1670399-1670418 Msa0528730:CDS 45.0%
ATTGCAGCCGGTGAGATTTA+TGG + chr4_1:1670437-1670456 Msa0528730:CDS 45.0%
AAGGGGGAGGGAGATATAAA+TGG - chr4_1:1670518-1670537 None:intergenic 45.0%
!! GTTGTGGCTCTGAAAATGGT+TGG + chr4_1:1670665-1670684 Msa0528730:intron 45.0%
GGAACTGCTGTAACTCATCA+AGG - chr4_1:1670793-1670812 None:intergenic 45.0%
TTCATCACAGATGGCTGCTT+TGG + chr4_1:1670820-1670839 Msa0528730:CDS 45.0%
! GATGGCTGCTTTGGATTTCA+TGG + chr4_1:1670829-1670848 Msa0528730:CDS 45.0%
GATTTCATGGTTTCGGTAGC+CGG + chr4_1:1670842-1670861 Msa0528730:CDS 45.0%
!! GGTAGGAATAAAGGTGTCAC+CGG - chr4_1:1670864-1670883 None:intergenic 45.0%
! TCCTACCTATGATGGGAACA+TGG + chr4_1:1670877-1670896 Msa0528730:CDS 45.0%
TGGGAACATGGCAAAACTTG+TGG + chr4_1:1670889-1670908 Msa0528730:CDS 45.0%
GAGTAAATAGATACCTGCGG+TGG - chr4_1:1670919-1670938 None:intergenic 45.0%
! CCTTTTCCGGTCCAATAAGA+TGG - chr4_1:1671061-1671080 Msa0528740:three_prime_UTR 45.0%
CCATCTTATTGGACCGGAAA+AGG + chr4_1:1671058-1671077 Msa0528730:CDS 45.0%
TGTAGACAAACCAAAGGAGG+AGG + chr4_1:1671197-1671216 Msa0528730:CDS 45.0%
CACACTTTGTTCCCTCACAA+AGG - chr4_1:1671251-1671270 Msa0528740:three_prime_UTR 45.0%
! CTCTAAGAACTTATGCCCGA+GGG - chr4_1:1671394-1671413 Msa0528740:three_prime_UTR 45.0%
! TCTCTAAGAACTTATGCCCG+AGG - chr4_1:1671395-1671414 Msa0528740:three_prime_UTR 45.0%
TACAAGCTGCAGGCATGTAA+TGG + chr4_1:1671701-1671720 Msa0528730:three_prime_UTR 45.0%
ACAAGCTGCAGGCATGTAAT+GGG + chr4_1:1671702-1671721 Msa0528730:three_prime_UTR 45.0%
GGGTTGTAATAATTGTGGCC+GGG + chr4_1:1671722-1671741 Msa0528730:three_prime_UTR 45.0%
CTCAAGGATCTTGGACTTTG+CGG - chr4_1:1671952-1671971 Msa0528740:three_prime_UTR 45.0%
AGATCTCATCAATTTGCCGC+AGG + chr4_1:1672025-1672044 Msa0528730:three_prime_UTR 45.0%
AGCAGTCGGAATAAGAGAAG+GGG - chr4_1:1672061-1672080 Msa0528740:three_prime_UTR 45.0%
TCAAGGCTTGCAATAGCAGT+CGG - chr4_1:1672075-1672094 Msa0528740:three_prime_UTR 45.0%
CATTCAGGGTTCCAACATGA+TGG - chr4_1:1672334-1672353 Msa0528740:intron 45.0%
TGGTTGTGTGATAACCAGCA+AGG + chr4_1:1672375-1672394 Msa0528730:three_prime_UTR 45.0%
GGTTGTGTGATAACCAGCAA+GGG + chr4_1:1672376-1672395 Msa0528730:three_prime_UTR 45.0%
TGAGGAGCTAGTATGCAAAG+CGG - chr4_1:1672423-1672442 Msa0528740:three_prime_UTR 45.0%
TCCTCATTATCACGGCTCAT+GGG + chr4_1:1672437-1672456 Msa0528730:three_prime_UTR 45.0%
ACTGTTCAGAGACTCCATCT+GGG - chr4_1:1672477-1672496 Msa0528740:three_prime_UTR 45.0%
!! GGGTACCGATGCTTTCTTAT+TGG - chr4_1:1672504-1672523 Msa0528740:three_prime_UTR 45.0%
CTGAGATTAGTAGCACTAGG+GGG - chr4_1:1672524-1672543 Msa0528740:three_prime_UTR 45.0%
!! AGATATGGAAGCATCCCTTC+TGG + chr4_1:1672542-1672561 Msa0528730:three_prime_UTR 45.0%
ATGCATACACCTTGACACTG+GGG - chr4_1:1672670-1672689 Msa0528740:three_prime_UTR 45.0%
GCAATCCAAGCTGTATTCTG+AGG - chr4_1:1672863-1672882 Msa0528740:three_prime_UTR 45.0%
TAGCCAGCTCTTCCATATCA+AGG - chr4_1:1672947-1672966 Msa0528740:three_prime_UTR 45.0%
ATACATCCATGTCCATCCGA+GGG - chr4_1:1673019-1673038 Msa0528740:three_prime_UTR 45.0%
AATACATCCATGTCCATCCG+AGG - chr4_1:1673020-1673039 Msa0528740:three_prime_UTR 45.0%
TTCTCCTGCCTTGACAGAAA+GGG + chr4_1:1673112-1673131 Msa0528730:three_prime_UTR 45.0%
GGGATTACCTATTTGCCCTA+AGG - chr4_1:1673141-1673160 Msa0528740:CDS 45.0%
!!! ACCAGCTGGTCTTTTCTCTT+GGG - chr4_1:1673161-1673180 Msa0528740:CDS 45.0%
TATGAAGTCAAAGGACCAGC+TGG - chr4_1:1673175-1673194 Msa0528740:CDS 45.0%
CAAACACGAAAACGGCTCCT+TGG - chr4_1:1667521-1667540 None:intergenic 50.0%
!! CAAGGAGCCGTTTTCGTGTT+TGG + chr4_1:1667519-1667538 Msa0528730:CDS 50.0%
CTTGCAGGAAGTAGAATGGG+AGG - chr4_1:1667704-1667723 None:intergenic 50.0%
! CGTAGATGGGTTTGGTAGAC+GGG + chr4_1:1668780-1668799 Msa0528730:intron 50.0%
! GTAGATGGGTTTGGTAGACG+GGG + chr4_1:1668781-1668800 Msa0528730:intron 50.0%
CGTGTCAGCTGAAATCTTGC+AGG + chr4_1:1668861-1668880 Msa0528730:intron 50.0%
!! CTAAGAGTGTCCTGCAATGG+GGG + chr4_1:1668906-1668925 Msa0528730:CDS 50.0%
GTTCCGGAACAACCAATGTG+AGG - chr4_1:1669074-1669093 None:intergenic 50.0%
! AATCCTTTTGGGCAGACCGT+AGG + chr4_1:1669103-1669122 Msa0528730:CDS 50.0%
ATACCTACGGTCTGCCCAAA+AGG - chr4_1:1669109-1669128 None:intergenic 50.0%
TTATTCTGGCAGTGGCTTCG+AGG + chr4_1:1669199-1669218 Msa0528730:intron 50.0%
GAAAAGTGGATACTCGACCC+TGG + chr4_1:1669304-1669323 Msa0528730:CDS 50.0%
GAAGTGCACCACCTTGTGTT+TGG - chr4_1:1669791-1669810 None:intergenic 50.0%
GAGGGGTGAATTTAAGTGCC+TGG - chr4_1:1669888-1669907 None:intergenic 50.0%
!! ATGGACATGCTGGCTTTCTC+AGG + chr4_1:1669988-1670007 Msa0528730:CDS 50.0%
AAGAAGCCGAGGATCTCAAG+CGG + chr4_1:1670034-1670053 Msa0528730:CDS 50.0%
GTCTGAAGAAAGGAGATCCC+AGG + chr4_1:1670337-1670356 Msa0528730:CDS 50.0%
GTGTCAAAGGACATAGACCC+TGG - chr4_1:1670358-1670377 None:intergenic 50.0%
GGGTCTATGTCCTTTGACAC+CGG + chr4_1:1670358-1670377 Msa0528730:CDS 50.0%
TCTATGTCCTTTGACACCGG+AGG + chr4_1:1670361-1670380 Msa0528730:CDS 50.0%
ATAACCAAGGCAGTCTCCTC+CGG - chr4_1:1670380-1670399 None:intergenic 50.0%
GCCTTGGTTATGCAAGCCTT+AGG + chr4_1:1670389-1670408 Msa0528730:CDS 50.0%
!! GCAAGCCTTAGGTTTTGACC+GGG + chr4_1:1670400-1670419 Msa0528730:CDS 50.0%
TGTCTCCCGGTCAAAACCTA+AGG - chr4_1:1670408-1670427 None:intergenic 50.0%
GCCATGTTCCCATCATAGGT+AGG - chr4_1:1670881-1670900 None:intergenic 50.0%
TAGCGCTCATGCAGGTATTC+CGG + chr4_1:1671024-1671043 Msa0528730:intron 50.0%
GTTTGTAGATGCTGTGCGAC+AGG + chr4_1:1671131-1671150 Msa0528730:CDS 50.0%
!! ACAAAGGCACTCATGAGGGT+TGG - chr4_1:1671235-1671254 Msa0528740:three_prime_UTR 50.0%
!! CCTCACAAAGGCACTCATGA+GGG - chr4_1:1671239-1671258 Msa0528740:three_prime_UTR 50.0%
CCTCATGAGTGCCTTTGTGA+GGG + chr4_1:1671237-1671256 Msa0528730:CDS 50.0%
CTGAAAATGGCTCCTTCCCT+CGG + chr4_1:1671375-1671394 Msa0528730:three_prime_UTR 50.0%
TGAAAATGGCTCCTTCCCTC+GGG + chr4_1:1671376-1671395 Msa0528730:three_prime_UTR 50.0%
AAGAACTTATGCCCGAGGGA+AGG - chr4_1:1671390-1671409 Msa0528740:three_prime_UTR 50.0%
CATGCCTGCAGCTTGTAAAG+TGG - chr4_1:1671698-1671717 Msa0528740:three_prime_UTR 50.0%
TCACATGCGTTCACCGTAGA+AGG + chr4_1:1671789-1671808 Msa0528730:three_prime_UTR 50.0%
! GGTGAAAGTGGTGATGTCCT+TGG - chr4_1:1671931-1671950 Msa0528740:three_prime_UTR 50.0%
CTTGGACTTTGCGGTGAAAG+TGG - chr4_1:1671943-1671962 Msa0528740:three_prime_UTR 50.0%
GAAAGGAGGCTCAAGGATCT+TGG - chr4_1:1671961-1671980 Msa0528740:three_prime_UTR 50.0%
TGTGTGATAACCAGCAAGGG+CGG + chr4_1:1672379-1672398 Msa0528730:three_prime_UTR 50.0%
CTCCTCATTATCACGGCTCA+TGG + chr4_1:1672436-1672455 Msa0528730:three_prime_UTR 50.0%
CTGTTCAGAGACTCCATCTG+GGG - chr4_1:1672476-1672495 Msa0528740:three_prime_UTR 50.0%
CACTGTTCAGAGACTCCATC+TGG - chr4_1:1672478-1672497 Msa0528740:three_prime_UTR 50.0%
! GAAGCATCCCTTCTGGAAGA+GGG + chr4_1:1672549-1672568 Msa0528730:three_prime_UTR 50.0%
ATAACCGCCCTCTTCCAGAA+GGG - chr4_1:1672559-1672578 Msa0528740:three_prime_UTR 50.0%
TATAACCGCCCTCTTCCAGA+AGG - chr4_1:1672560-1672579 Msa0528740:three_prime_UTR 50.0%
GTAGACGTTGCTGAGACCAA+TGG - chr4_1:1672614-1672633 Msa0528740:three_prime_UTR 50.0%
! AAGCAATGCAGAGTTGGCTC+TGG - chr4_1:1672726-1672745 Msa0528740:three_prime_UTR 50.0%
TTGCGCCTCAGAATACAGCT+TGG + chr4_1:1672855-1672874 Msa0528730:three_prime_UTR 50.0%
TACATCCATGTCCATCCGAG+GGG - chr4_1:1673018-1673037 Msa0528740:three_prime_UTR 50.0%
TTCTGTCAAGGCAGGAGAAC+AGG - chr4_1:1673111-1673130 Msa0528740:CDS 50.0%
GTTCTCCTGCCTTGACAGAA+AGG + chr4_1:1673111-1673130 Msa0528730:three_prime_UTR 50.0%
TCTCCTGCCTTGACAGAAAG+GGG + chr4_1:1673113-1673132 Msa0528730:three_prime_UTR 50.0%
TAAGGAGCCCCTTTCTGTCA+AGG - chr4_1:1673123-1673142 Msa0528740:CDS 50.0%
TTGACAGAAAGGGGCTCCTT+AGG + chr4_1:1673122-1673141 Msa0528730:three_prime_UTR 50.0%
TGACAGAAAGGGGCTCCTTA+GGG + chr4_1:1673123-1673142 Msa0528730:three_prime_UTR 50.0%
TCCCAAGAGAAAAGACCAGC+TGG + chr4_1:1673157-1673176 Msa0528730:three_prime_UTR 50.0%
!!! GACCAGCTGGTCTTTTCTCT+TGG - chr4_1:1673162-1673181 Msa0528740:CDS 50.0%
GAAGCTGGTGAATGAGGGTG+AGG - chr4_1:1667193-1667212 None:intergenic 55.0%
ACAACTCAACGGCCTCCTCA+AGG + chr4_1:1667656-1667675 Msa0528730:CDS 55.0%
!! GCTAACAGGAGGCATCTCCA+GGG - chr4_1:1669324-1669343 None:intergenic 55.0%
!! AGCTAACAGGAGGCATCTCC+AGG - chr4_1:1669325-1669344 None:intergenic 55.0%
TGGAGATGCCTCCTGTTAGC+TGG + chr4_1:1669324-1669343 Msa0528730:CDS 55.0%
CCTCATCCGCTTGAGATCCT+CGG - chr4_1:1670043-1670062 None:intergenic 55.0%
GCAGCCGGTGAGATTTATGG+TGG + chr4_1:1670440-1670459 Msa0528730:CDS 55.0%
CCCTCATGAGTGCCTTTGTG+AGG + chr4_1:1671236-1671255 Msa0528730:CDS 55.0%
!! CCCTCACAAAGGCACTCATG+AGG - chr4_1:1671240-1671259 Msa0528740:three_prime_UTR 55.0%
GCAGGATCGCAAGCTGAAAG+AGG - chr4_1:1672109-1672128 Msa0528740:intron 55.0%
! GCCCATGAGCCGTGATAATG+AGG - chr4_1:1672441-1672460 Msa0528740:three_prime_UTR 55.0%
CACCTCAAGATGACCCCAGA+TGG + chr4_1:1672460-1672479 Msa0528730:three_prime_UTR 55.0%
! CTCCATCTGGGGTCATCTTG+AGG - chr4_1:1672465-1672484 Msa0528740:three_prime_UTR 55.0%
!! GGAAGCATCCCTTCTGGAAG+AGG + chr4_1:1672548-1672567 Msa0528730:three_prime_UTR 55.0%
CTCGGATATCCCCAGTGTCA+AGG + chr4_1:1672658-1672677 Msa0528730:three_prime_UTR 55.0%
!! GCAGAGTTGGCTCTGGACTA+TGG - chr4_1:1672719-1672738 Msa0528740:three_prime_UTR 55.0%
TCCTACCGTCGAAAACCCCT+CGG + chr4_1:1673000-1673019 Msa0528730:intron 55.0%
! TCCATCCGAGGGGTTTTCGA+CGG - chr4_1:1673008-1673027 Msa0528740:three_prime_UTR 55.0%
GAAAACCCCTCGGATGGACA+TGG + chr4_1:1673010-1673029 Msa0528730:intron 55.0%
AGGGGCTCCTTAGGGCAAAT+AGG + chr4_1:1673131-1673150 Msa0528730:three_prime_UTR 55.0%
CTGTAGTCACTCTGGCACTG+TGG + chr4_1:1673206-1673225 Msa0528730:three_prime_UTR 55.0%
! TCGCGAGAGGGGACCTTTTG+TGG + chr4_1:1669945-1669964 Msa0528730:CDS 60.0%
CCGAGGATCTCAAGCGGATG+AGG + chr4_1:1670040-1670059 Msa0528730:CDS 60.0%
! GCAGTCTCCTCCGGTGTCAA+AGG - chr4_1:1670371-1670390 None:intergenic 60.0%
AACTTGTGGAAGGCCACCGC+AGG + chr4_1:1670903-1670922 Msa0528730:CDS 60.0%
! ACCAGCAAGGGCGGATTTGC+AGG + chr4_1:1672388-1672407 Msa0528730:three_prime_UTR 60.0%
! GCATCCCTTCTGGAAGAGGG+CGG + chr4_1:1672552-1672571 Msa0528730:three_prime_UTR 60.0%
! TCCGAGGGGTTTTCGACGGT+AGG - chr4_1:1673004-1673023 Msa0528740:three_prime_UTR 60.0%
ACCGTCGAAAACCCCTCGGA+TGG + chr4_1:1673004-1673023 Msa0528730:intron 60.0%
GAGCCCCTTTCTGTCAAGGC+AGG - chr4_1:1673119-1673138 Msa0528740:CDS 60.0%
GACACCGGAGGAGACTGCCT+TGG + chr4_1:1670373-1670392 Msa0528730:CDS 65.0%
GCCTGCAAATCCGCCCTTGC+TGG - chr4_1:1672392-1672411 Msa0528740:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 1666649 1673234 1666649 ID=Msa0528730;Name=Msa0528730
chr4_1 mRNA 1666649 1673234 1666649 ID=Msa0528730-mRNA-1;Parent=Msa0528730;Name=Msa0528730-mRNA-1;_AED=0.12;_eAED=0.12;_QI=717|1|1|1|0.7|0.54|11|1552|507
chr4_1 exon 1666649 1667289 1666649 ID=Msa0528730-mRNA-1:exon:490;Parent=Msa0528730-mRNA-1
chr4_1 exon 1667370 1667722 1667370 ID=Msa0528730-mRNA-1:exon:491;Parent=Msa0528730-mRNA-1
chr4_1 exon 1668883 1668950 1668883 ID=Msa0528730-mRNA-1:exon:492;Parent=Msa0528730-mRNA-1
chr4_1 exon 1669036 1669124 1669036 ID=Msa0528730-mRNA-1:exon:493;Parent=Msa0528730-mRNA-1
chr4_1 exon 1669211 1669373 1669211 ID=Msa0528730-mRNA-1:exon:494;Parent=Msa0528730-mRNA-1
chr4_1 exon 1669772 1670061 1669772 ID=Msa0528730-mRNA-1:exon:495;Parent=Msa0528730-mRNA-1
chr4_1 exon 1670301 1670505 1670301 ID=Msa0528730-mRNA-1:exon:496;Parent=Msa0528730-mRNA-1
chr4_1 exon 1670767 1670924 1670767 ID=Msa0528730-mRNA-1:exon:497;Parent=Msa0528730-mRNA-1
chr4_1 exon 1671038 1672127 1671038 ID=Msa0528730-mRNA-1:exon:498;Parent=Msa0528730-mRNA-1
chr4_1 exon 1672370 1672979 1672370 ID=Msa0528730-mRNA-1:exon:499;Parent=Msa0528730-mRNA-1
chr4_1 exon 1673109 1673234 1673109 ID=Msa0528730-mRNA-1:exon:500;Parent=Msa0528730-mRNA-1
chr4_1 five_prime_UTR 1666649 1667289 1666649 ID=Msa0528730-mRNA-1:five_prime_utr;Parent=Msa0528730-mRNA-1
chr4_1 five_prime_UTR 1667370 1667445 1667370 ID=Msa0528730-mRNA-1:five_prime_utr;Parent=Msa0528730-mRNA-1
chr4_1 CDS 1667446 1667722 1667446 ID=Msa0528730-mRNA-1:cds;Parent=Msa0528730-mRNA-1
chr4_1 CDS 1668883 1668950 1668883 ID=Msa0528730-mRNA-1:cds;Parent=Msa0528730-mRNA-1
chr4_1 CDS 1669036 1669124 1669036 ID=Msa0528730-mRNA-1:cds;Parent=Msa0528730-mRNA-1
chr4_1 CDS 1669211 1669373 1669211 ID=Msa0528730-mRNA-1:cds;Parent=Msa0528730-mRNA-1
chr4_1 CDS 1669772 1670061 1669772 ID=Msa0528730-mRNA-1:cds;Parent=Msa0528730-mRNA-1
chr4_1 CDS 1670301 1670505 1670301 ID=Msa0528730-mRNA-1:cds;Parent=Msa0528730-mRNA-1
chr4_1 CDS 1670767 1670924 1670767 ID=Msa0528730-mRNA-1:cds;Parent=Msa0528730-mRNA-1
chr4_1 CDS 1671038 1671311 1671038 ID=Msa0528730-mRNA-1:cds;Parent=Msa0528730-mRNA-1
chr4_1 three_prime_UTR 1671312 1672127 1671312 ID=Msa0528730-mRNA-1:three_prime_utr;Parent=Msa0528730-mRNA-1
chr4_1 three_prime_UTR 1672370 1672979 1672370 ID=Msa0528730-mRNA-1:three_prime_utr;Parent=Msa0528730-mRNA-1
chr4_1 three_prime_UTR 1673109 1673234 1673109 ID=Msa0528730-mRNA-1:three_prime_utr;Parent=Msa0528730-mRNA-1
Gene Sequence

>Msa0528730

ATGGAAGTTAGATCATCAGAGGGTAATCAAGTGAGATATTATGATAAGCTTCTTCAAGCTGCTCCTTTGATTCCAAGGAGCCGTTTTCGTGTTTGGTTTATTCGAATTTGTTCAACCATTGTGCTGTGGACATGTTTGGTTCAGCTTGTGACTGTGAGTGAACTATGGCATTCCAATTTCTTTACTGGATTTACTAGTCGTATATATCACACAACTCAACGGCCTCCTCAAGGAGATGTTATATTTGCTCAATCTCCTCCCATTCTACTTCCTGCAAGAAATTATACTAGTAATGGTTTTCTAAGAGTGTCCTGCAATGGGGGTTTGAATCAAATGCGTGCAGCGATTTGTGACATGGTGACAATTGCTCGGCTTTTGAACCTCACATTGGTTGTTCCGGAACTTGATAAGAAATCCTTTTGGGCAGACCGTAGTGGCTTCGAGGATATATTTGATGTAAGACATTTCATTGATTCTTTACGAGATGAAGTTCGAATAGTGAAAAGAGTTCCCAAAAAGTTTACTAGGAAAAGTGGATACTCGACCCTGGAGATGCCTCCTGTTAGCTGGTCAAATGAAAAGTATTACTTGGAGCAGATTCTACCGCTTTTTGCCAAACACAAGGTGGTGCACTTCAACAAAACAGATGCACGCCTAGCAAATAATGGTCTCCCAATTGATCTACAGAAACTTAGGTGCCGTGTTAATTACCAGGCACTTAAATTCACCCCTCAAATTGAGAATCTGGGGCAAAAATTGATTCAGATACTTCGCGAGAGGGGACCTTTTGTGGCATTGCATCTGAGATATGAGATGGACATGCTGGCTTTCTCAGGTTGTACTCTTGGTTGCACTAATGAAGAAGCCGAGGATCTCAAGCGGATGAGATATGCATTCCCTTCATGGAGAGAGAAGGAAATAGTGTCTGAAGAAAGGAGATCCCAGGGTCTATGTCCTTTGACACCGGAGGAGACTGCCTTGGTTATGCAAGCCTTAGGTTTTGACCGGGAGACACAGATTTACATTGCAGCCGGTGAGATTTATGGTGGTGAACGTAGACTTGCGCAACTGAGAGCTGCATTTCCAAAAATTGTTAAAAAAGAGGTATTGGTCGCCCTTGATGAGTTACAGCAGTTCCAAAATCATTCATCACAGATGGCTGCTTTGGATTTCATGGTTTCGGTAGCCGGTGACACCTTTATTCCTACCTATGATGGGAACATGGCAAAACTTGTGGAAGGCCACCGCAGGTATTCCGGTTTTAAAAAGTCCATCTTATTGGACCGGAAAAGGCTTGTACAATTGCTTGATATGCATCAAAATGGAACCCTTCCATGGAATGAGTTTGTAGATGCTGTGCGACAGGTTCACGAAAAGAGAATGGGTCAGCCGACTTATCGTCGAATCATTGTAGACAAACCAAAGGAGGAGGATTATTTCTACGCCAACCCTCATGAGTGCCTTTGTGAGGGAACAAAGTGTGATGATTTGCTAGGTCCTCATAACTCTACTCAAGTAAGATGA
Protein sequence

>Msa0528730

MEVRSSEGNQVRYYDKLLQAAPLIPRSRFRVWFIRICSTIVLWTCLVQLVTVSELWHSNFFTGFTSRIYHTTQRPPQGDVIFAQSPPILLPARNYTSNGFLRVSCNGGLNQMRAAICDMVTIARLLNLTLVVPELDKKSFWADRSGFEDIFDVRHFIDSLRDEVRIVKRVPKKFTRKSGYSTLEMPPVSWSNEKYYLEQILPLFAKHKVVHFNKTDARLANNGLPIDLQKLRCRVNYQALKFTPQIENLGQKLIQILRERGPFVALHLRYEMDMLAFSGCTLGCTNEEAEDLKRMRYAFPSWREKEIVSEERRSQGLCPLTPEETALVMQALGFDRETQIYIAAGEIYGGERRLAQLRAAFPKIVKKEVLVALDELQQFQNHSSQMAALDFMVSVAGDTFIPTYDGNMAKLVEGHRRYSGFKKSILLDRKRLVQLLDMHQNGTLPWNEFVDAVRQVHEKRMGQPTYRRIIVDKPKEEDYFYANPHECLCEGTKCDDLLGPHNSTQVR*