AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0528840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0528840 MtrunA17_Chr4g0042711 98.422 507 8 0 1 507 1 507 0.0 1046
Msa0528840 MtrunA17_Chr5g0417871 80.041 486 90 3 28 506 9 494 0.0 823
Msa0528840 MtrunA17_Chr6g0455571 59.006 483 196 2 8 488 25 507 0.0 605
Msa0528840 MtrunA17_Chr4g0061781 61.588 466 173 2 29 488 43 508 0.0 603
Msa0528840 MtrunA17_Chr2g0307971 57.809 493 202 3 8 499 30 517 0.0 597
Msa0528840 MtrunA17_Chr5g0426591 48.675 415 201 4 87 489 97 511 1.93e-140 414
Msa0528840 MtrunA17_Chr4g0070551 48.485 396 197 5 97 490 228 618 9.24e-136 406
Msa0528840 MtrunA17_Chr4g0008451 48.371 399 199 5 97 493 232 625 3.46e-134 402
Msa0528840 MtrunA17_Chr3g0132371 47.952 415 201 5 87 489 127 538 1.42e-131 392
Msa0528840 MtrunA17_Chr5g0436321 46.599 397 205 5 96 490 160 551 1.82e-129 388
Msa0528840 MtrunA17_Chr3g0129981 45.735 422 200 8 87 489 100 511 1.25e-124 374
Msa0528840 MtrunA17_Chr3g0143821 43.358 399 207 9 98 492 112 495 6.11e-100 312
Msa0528840 MtrunA17_Chr5g0399311 42.410 415 214 10 92 499 119 515 3.46e-99 308
Msa0528840 MtrunA17_Chr4g0056061 40.876 411 220 8 93 497 104 497 3.31e-98 306
Msa0528840 MtrunA17_Chr5g0448581 40.393 458 239 11 54 505 90 519 1.52e-97 306
Msa0528840 MtrunA17_Chr1g0204121 39.716 423 223 11 83 492 74 477 5.18e-93 292
Msa0528840 MtrunA17_Chr5g0412251 38.051 431 218 9 97 491 86 503 1.17e-90 286
Msa0528840 MtrunA17_Chr3g0123521 39.487 390 216 7 90 464 144 528 2.31e-89 284
Msa0528840 MtrunA17_Chr3g0132951 36.613 437 228 9 91 491 94 517 6.13e-88 279
Msa0528840 MtrunA17_Chr1g0204141 38.005 421 236 10 83 492 74 480 2.71e-84 270
Msa0528840 MtrunA17_Chr4g0043911 35.096 416 243 10 97 496 150 554 5.83e-82 265
Msa0528840 MtrunA17_Chr5g0424241 36.650 412 231 10 98 489 158 559 7.17e-79 258
Msa0528840 MtrunA17_Chr4g0075311 37.642 441 220 11 94 489 161 591 1.48e-78 257
Msa0528840 MtrunA17_Chr2g0284071 35.892 443 231 10 91 490 209 641 4.63e-78 257
Msa0528840 MtrunA17_Chr1g0160781 34.223 412 244 9 97 492 149 549 1.18e-76 251
Msa0528840 MtrunA17_Chr3g0077321 35.507 414 232 11 97 490 147 545 1.55e-74 245
Msa0528840 MtrunA17_Chr3g0087291 36.432 398 234 9 100 492 176 559 1.06e-71 238
Msa0528840 MtrunA17_Chr4g0010511 36.409 401 236 8 100 495 236 622 6.52e-71 237
Msa0528840 MtrunA17_Chr7g0240241 77.419 124 24 1 256 375 1 124 1.09e-60 195
Msa0528840 MtrunA17_Chr4g0003561 33.957 374 221 9 90 457 68 421 9.32e-59 201
Msa0528840 MtrunA17_Chr3g0127811 32.997 297 171 8 97 379 63 345 5.78e-42 156
Msa0528840 MtrunA17_Chr1g0146501 32.686 309 180 8 94 379 82 385 9.20e-42 158
Msa0528840 MtrunA17_Chr7g0220381 31.148 305 185 7 85 370 86 384 3.44e-39 151
Msa0528840 MtrunA17_Chr4g0002361 26.225 347 196 12 97 427 86 388 8.87e-24 103
Msa0528840 MtrunA17_Chr1g0172911 58.000 50 21 0 209 258 80 129 2.40e-12 64.3
Msa0528840 MtrunA17_Chr1g0172911 47.761 67 11 1 95 137 19 85 1.37e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0528840 AT1G14020.1 71.881 505 136 2 1 505 1 499 0.0 761
Msa0528840 AT2G03280.1 69.528 466 130 4 24 488 26 480 0.0 687
Msa0528840 AT2G03280.2 65.720 493 130 5 24 488 26 507 0.0 672
Msa0528840 AT5G15740.1 58.030 467 194 2 23 488 33 498 0.0 581
Msa0528840 AT3G02250.1 58.491 477 190 4 15 488 27 498 0.0 576
Msa0528840 AT2G37980.1 46.453 437 227 5 73 507 202 633 1.36e-137 411
Msa0528840 AT3G54100.1 46.065 432 216 7 73 497 198 619 1.21e-133 401
Msa0528840 AT5G35570.1 47.407 405 206 5 96 498 250 649 2.18e-132 399
Msa0528840 AT1G22460.1 45.370 432 216 6 76 490 130 558 2.54e-129 388
Msa0528840 AT5G64600.1 46.778 419 200 8 87 489 103 514 1.78e-128 384
Msa0528840 AT5G01100.1 47.132 401 204 5 97 493 216 612 2.95e-128 387
Msa0528840 AT1G76270.1 44.584 397 204 7 100 494 109 491 1.99e-104 324
Msa0528840 AT4G38390.1 43.500 400 212 7 97 494 123 510 2.03e-102 318
Msa0528840 AT1G20550.1 42.157 408 220 7 100 505 112 505 6.59e-102 317
Msa0528840 AT4G16650.2 43.521 409 207 10 89 490 113 504 3.36e-95 299
Msa0528840 AT4G16650.1 43.521 409 207 10 89 490 113 504 3.36e-95 299
Msa0528840 AT1G04910.1 36.853 464 259 10 50 506 57 493 7.60e-92 290
Msa0528840 AT4G24530.1 37.674 430 219 9 97 490 101 517 9.79e-90 284
Msa0528840 AT3G26370.1 38.974 390 218 7 90 464 152 536 3.38e-89 284
Msa0528840 AT5G65470.1 35.581 430 226 9 99 490 87 503 1.57e-86 275
Msa0528840 AT1G11990.1 39.173 411 222 10 98 491 191 590 2.18e-82 267
Msa0528840 AT1G62330.1 34.862 436 232 8 98 489 222 649 2.79e-82 268
Msa0528840 AT1G38065.1 36.427 431 238 11 79 489 24 438 5.81e-82 263
Msa0528840 AT1G38065.2 37.046 413 230 10 97 489 26 428 6.69e-82 262
Msa0528840 AT1G38131.1 37.046 413 230 10 97 489 155 557 1.74e-80 262
Msa0528840 AT1G11990.2 36.161 448 221 10 98 491 176 612 1.84e-77 254
Msa0528840 AT5G63390.1 38.000 400 228 9 100 493 167 552 1.94e-76 251
Msa0528840 AT1G29200.4 37.931 435 219 11 97 490 70 494 2.67e-76 248
Msa0528840 AT1G29200.1 37.931 435 219 11 97 490 70 494 2.67e-76 248
Msa0528840 AT1G35510.1 35.012 417 240 10 92 490 154 557 3.98e-75 248
Msa0528840 AT1G29200.2 37.931 435 219 11 97 490 186 610 4.94e-75 248
Msa0528840 AT2G01480.1 36.314 369 213 7 97 449 154 516 1.11e-74 246
Msa0528840 AT1G14970.3 34.140 413 245 10 97 493 9 410 1.36e-74 242
Msa0528840 AT1G14970.2 34.140 413 245 10 97 493 35 436 2.53e-74 242
Msa0528840 AT2G01480.2 36.695 357 207 6 97 437 154 507 2.97e-74 244
Msa0528840 AT1G29200.3 37.762 429 216 11 103 490 2 420 3.92e-74 241
Msa0528840 AT1G14970.1 34.140 413 245 10 97 493 155 556 3.06e-73 242
Msa0528840 AT2G44500.1 37.626 396 227 10 100 489 180 561 6.31e-73 242
Msa0528840 AT3G07900.1 34.634 410 247 8 84 489 180 572 5.87e-69 231
Msa0528840 AT1G52630.1 32.708 373 224 10 90 458 70 419 5.19e-59 201
Msa0528840 AT3G03810.2 35.855 304 178 7 91 379 83 384 8.56e-50 181
Msa0528840 AT3G03810.1 35.855 304 178 7 91 379 83 384 8.56e-50 181
Msa0528840 AT1G52630.2 31.054 351 218 9 112 458 1 331 1.09e-49 174
Msa0528840 AT3G26370.2 39.171 217 119 5 90 296 152 365 1.11e-45 164
Msa0528840 AT3G30300.2 33.333 306 180 7 91 379 97 395 2.93e-43 163
Msa0528840 AT3G30300.1 33.333 306 180 7 91 379 97 395 2.93e-43 163
Msa0528840 AT2G44500.2 39.914 233 127 7 100 326 180 405 4.56e-39 147
Msa0528840 AT1G51630.1 24.845 322 192 9 96 406 90 372 7.34e-19 89.4

Find 264 sgRNAs with CRISPR-Local

Find 477 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTTGTTGCAGTGTTTA+AGG 0.136425 4_1:-1809067 Msa0528840:intron
TTGATCATCGTCCCCTTTAA+AGG 0.157833 4_1:-1804579 Msa0528840:three_prime_UTR
TTATACAACTATACTGAATT+TGG 0.182459 4_1:+1804800 Msa0528830:three_prime_UTR
CAAATTCTGTGGACACAATT+TGG 0.185076 4_1:-1809191 Msa0528840:five_prime_UTR
CCATCTGTGATGAATGATTT+TGG 0.203102 4_1:+1805521 None:intergenic
AAAGTTCTGCTGCAACTTTC+TGG 0.203760 4_1:-1803449 Msa0528840:three_prime_UTR
ATTGCAGCCGGTGAGATTTA+TGG 0.227102 4_1:-1805895 Msa0528840:CDS
TGGCATTCCAATTTCTTTAC+TGG 0.232585 4_1:-1808724 Msa0528840:CDS
TTGCAGATTTGTGTTAATTT+TGG 0.236857 4_1:-1808971 Msa0528840:intron
GGGTACCGATGCTTTCTTAT+TGG 0.244903 4_1:+1803831 Msa0528830:CDS
TCAGATATGCATTCCCTTCA+TGG 0.261168 4_1:-1806035 Msa0528840:intron
GATGGCTGCTTTGGATTTCA+TGG 0.269401 4_1:-1805503 Msa0528840:CDS
TGCATTCAATCAACCTTTAA+AGG 0.269412 4_1:+1804566 Msa0528830:three_prime_UTR
AGATTGCTCTTGCATACTTA+TGG 0.269547 4_1:+1804978 Msa0528830:three_prime_UTR
AGTAAATCCAGTAAAGAAAT+TGG 0.278555 4_1:+1808717 None:intergenic
ACCAGCTTCAAATTCAATTC+TGG 0.279415 4_1:-1809131 Msa0528840:five_prime_UTR
CACCCCTCAAATTGAGAATC+TGG 0.293410 4_1:-1806432 Msa0528840:CDS
TGCTTTGGATTTCATGGTTT+CGG 0.294885 4_1:-1805497 Msa0528840:CDS
CAAAATACTTCTAATCTTGC+AGG 0.301113 4_1:+1804435 Msa0528830:exon
ACCAGCAAGGGCGGATTTGC+AGG 0.304466 4_1:-1803944 Msa0528840:three_prime_UTR
TCCTTTCTTTCCATTCTCAT+TGG 0.305081 4_1:-1809301 Msa0528840:five_prime_UTR
TTCATCACAGATGGCTGCTT+TGG 0.305983 4_1:-1805512 Msa0528840:CDS
CCAGCTTCAAATTCAATTCT+GGG 0.308049 4_1:-1809130 Msa0528840:five_prime_UTR
TTCTAAGAGTGTCCTGCAAT+GGG 0.310538 4_1:-1807428 Msa0528840:CDS
TTGCTTGATATGCATCAAAA+TGG 0.313563 4_1:-1805242 Msa0528840:CDS
CATCTTTGCAAGCCTCTATA+TGG 0.317158 4_1:+1804855 Msa0528830:three_prime_UTR
CTTTCTGGCTCTGATACATT+TGG 0.328912 4_1:-1803434 Msa0528840:three_prime_UTR
CTAAGTTTCTGTAGATCAAT+TGG 0.331955 4_1:+1806485 None:intergenic
AAGGATTTCTTATCAAGTTC+CGG 0.337356 4_1:+1807245 None:intergenic
GCTTTCTCAGGTTGTACTCT+TGG 0.343079 4_1:-1806332 Msa0528840:CDS
GCAGAGTTGGCTCTGGACTA+TGG 0.343115 4_1:+1803616 Msa0528830:CDS
ATAGAAATTTCAAATAATCT+TGG 0.344130 4_1:+1809627 None:intergenic
ATGCAAGAGCAATCTGAAAA+TGG 0.345318 4_1:-1804970 Msa0528840:three_prime_UTR
AACTTGATAAGAAATCCTTT+TGG 0.353716 4_1:-1807241 Msa0528840:CDS
GCCTGCAAATCCGCCCTTGC+TGG 0.360260 4_1:+1803943 Msa0528830:CDS
TAGAAATAATCCTCCTCCTT+TGG 0.360561 4_1:+1805125 Msa0528830:three_prime_UTR
TAGCGCTCATGCAGGTATTC+CGG 0.363730 4_1:-1805308 Msa0528840:intron
AACAACAGTATGTCATTAAC+TGG 0.364991 4_1:-1804469 Msa0528840:three_prime_UTR
CATTGTGCTGTGGACATGTT+TGG 0.367522 4_1:-1808773 Msa0528840:CDS
CACTGTTCAGAGACTCCATC+TGG 0.373117 4_1:+1803857 Msa0528830:CDS
GCATTCAATCAACCTTTAAA+GGG 0.374835 4_1:+1804567 Msa0528830:three_prime_UTR
GCAAGCAAGTTCTTCATCAT+TGG 0.385250 4_1:+1809666 None:intergenic
TGCTCTTGCATACTTATGGT+TGG 0.387006 4_1:+1804982 Msa0528830:three_prime_UTR
ACCTTTATTCCTACCTATGA+TGG 0.388352 4_1:-1805463 Msa0528840:CDS
GATCTTCGAGCAGAAAGAAT+TGG 0.388839 4_1:+1804325 Msa0528830:CDS
AGCTAACAGGAGGCATCTCC+AGG 0.388940 4_1:+1807010 None:intergenic
GCTCTTGCATACTTATGGTT+GGG 0.392646 4_1:+1804983 Msa0528830:three_prime_UTR
ATGGACATGCTGGCTTTCTC+AGG 0.395187 4_1:-1806344 Msa0528840:CDS
TGCCCCAGATTCTCAATTTG+AGG 0.396144 4_1:+1806428 None:intergenic
TCACATGCGTTCACCGTAGA+AGG 0.396385 4_1:-1804543 Msa0528840:three_prime_UTR
TTCTGTCAAGGCAGGAGAAC+AGG 0.398267 4_1:+1803224 Msa0528830:CDS
GAACCTCACATTGGTTGTTC+CGG 0.404001 4_1:-1807264 Msa0528840:CDS
CCATCTTATTGGACCGGAAA+AGG 0.405140 4_1:-1805274 Msa0528840:CDS
ACAAGCTGCAGGCATGTAAT+GGG 0.405918 4_1:-1804630 Msa0528840:three_prime_UTR
CTCAAGGATCTTGGACTTTG+CGG 0.406199 4_1:+1804383 Msa0528830:CDS
GAAAGGAGGCTCAAGGATCT+TGG 0.407166 4_1:+1804374 Msa0528830:CDS
TATGCATATCGATCTGCATT+TGG 0.408825 4_1:-1803649 Msa0528840:three_prime_UTR
TTCTCCTGCCTTGACAGAAA+GGG 0.411526 4_1:-1803220 Msa0528840:three_prime_UTR
TACAAGCTGCAGGCATGTAA+TGG 0.411895 4_1:-1804631 Msa0528840:three_prime_UTR
CTGAAAATGGCTCCTTCCCT+CGG 0.419876 4_1:-1804957 Msa0528840:three_prime_UTR
AGTGCTACTAATCTCAGATA+TGG 0.428804 4_1:-1803805 Msa0528840:three_prime_UTR
GCCTTGGTTATGCAAGCCTT+AGG 0.432969 4_1:-1805943 Msa0528840:CDS
CCCATCATAGGTAGGAATAA+AGG 0.436770 4_1:+1805462 None:intergenic
GTGCATGGATTCAAAGGTTT+GGG 0.437538 4_1:+1809481 None:intergenic
GCAGGAAATTATACTAGTAA+TGG 0.439060 4_1:-1807453 Msa0528840:intron
TTTCCTTGATATGGAAGAGC+TGG 0.441012 4_1:-1803391 Msa0528840:three_prime_UTR
TTTCTTGATAATATTCCAAC+TGG 0.444121 4_1:-1804355 Msa0528840:three_prime_UTR
TTTCTAAGAGTGTCCTGCAA+TGG 0.444915 4_1:-1807429 Msa0528840:CDS
ATACCTACGGTCTGCCCAAA+AGG 0.445579 4_1:+1807226 None:intergenic
AGGAAATAGTGTCTGAAGAA+AGG 0.445827 4_1:-1806005 Msa0528840:CDS
GATTTCATGGTTTCGGTAGC+CGG 0.450519 4_1:-1805490 Msa0528840:CDS
GGAACTGCTGTAACTCATCA+AGG 0.452325 4_1:+1805542 None:intergenic
TGTGCATGGATTCAAAGGTT+TGG 0.454873 4_1:+1809480 None:intergenic
TGAAAAGTGTGTGAAGGTTA+TGG 0.457566 4_1:-1808945 Msa0528840:five_prime_UTR
AAAAGTCCATCTTATTGGAC+CGG 0.458534 4_1:-1805280 Msa0528840:CDS
ATAGTTTATTACCTGTTCAA+TGG 0.458942 4_1:-1803977 Msa0528840:intron
TGAAGTGTGTGACAAAGAAA+TGG 0.461488 4_1:-1808908 Msa0528840:exon
GAAGTGCACCACCTTGTGTT+TGG 0.463947 4_1:+1806544 None:intergenic
AAGCTGCTCCTTTGATTCCA+AGG 0.468221 4_1:-1808834 Msa0528840:CDS
GTTCTCCTGCCTTGACAGAA+AGG 0.468467 4_1:-1803221 Msa0528840:three_prime_UTR
CTTACTTGAGTAGAGTTATG+AGG 0.468781 4_1:+1805047 Msa0528830:three_prime_UTR
TTGGGAGACCATTATTTGCT+AGG 0.469220 4_1:+1806504 None:intergenic
GCCCCAGATTCTCAATTTGA+GGG 0.469715 4_1:+1806429 None:intergenic
TTATTCTGGCAGTGGCTTCG+AGG 0.470272 4_1:-1807133 Msa0528840:intron
GAATAAACCAAACACGAAAA+CGG 0.470528 4_1:+1808809 None:intergenic
TCCAATGAGAATGGAAAGAA+AGG 0.471672 4_1:+1809300 None:intergenic
CTAACTTGCAGGAAGTAGAA+TGG 0.473374 4_1:+1808630 None:intergenic
TAAGTTTCTGTAGATCAATT+GGG 0.475386 4_1:+1806486 None:intergenic
TGGAGATGCCTCCTGTTAGC+TGG 0.475776 4_1:-1807008 Msa0528840:CDS
TTGTGACTGTGAGTGAACTA+TGG 0.476628 4_1:-1808744 Msa0528840:CDS
AGATATGGAAGCATCCCTTC+TGG 0.477120 4_1:-1803790 Msa0528840:three_prime_UTR
CTCCTCATTATCACGGCTCA+TGG 0.477204 4_1:-1803896 Msa0528840:three_prime_UTR
AAGCAATGCAGAGTTGGCTC+TGG 0.478444 4_1:+1803609 Msa0528830:CDS
TAACTTGCAGGAAGTAGAAT+GGG 0.479064 4_1:+1808631 None:intergenic
CAAACACGAAAACGGCTCCT+TGG 0.481546 4_1:+1808817 None:intergenic
CTCCATCTGGGGTCATCTTG+AGG 0.481584 4_1:+1803870 Msa0528830:CDS
GAAATATATGTTCCATATAG+AGG 0.482623 4_1:-1804867 Msa0528840:three_prime_UTR
AATTGTGTGCATGGATTCAA+AGG 0.483270 4_1:+1809475 None:intergenic
ACCCCTCAAATTGAGAATCT+GGG 0.484445 4_1:-1806431 Msa0528840:CDS
AAGAGGCAAATCTAGATTCA+AGG 0.484970 4_1:+1804243 Msa0528830:CDS
GAGGGGTGAATTTAAGTGCC+TGG 0.487600 4_1:+1806447 None:intergenic
GTCAAATGAAAAGTATTACT+TGG 0.489028 4_1:-1806986 Msa0528840:CDS
CTCAGATGCAATGCCACAAA+AGG 0.490594 4_1:+1806374 None:intergenic
ACAACTATACTGAATTTGGT+GGG 0.497845 4_1:+1804804 Msa0528830:three_prime_UTR
GGGATTACCTATTTGCCCTA+AGG 0.498091 4_1:+1803193 Msa0528830:CDS
AAACAAAAGCAATGCAGAGT+TGG 0.498255 4_1:+1803603 Msa0528830:CDS
ATTTCCTTCTCTCTCCATGA+AGG 0.500444 4_1:+1806021 None:intergenic
AGGTGAGGATCCAATGAGAA+TGG 0.501136 4_1:+1809291 None:intergenic
GTAGATGAATTGAGAGATCC+AGG 0.502785 4_1:+1809503 None:intergenic
GATGCACGCCTAGCAAATAA+TGG 0.504541 4_1:-1806512 Msa0528840:CDS
CCCAGAATTGAATTTGAAGC+TGG 0.505271 4_1:+1809130 None:intergenic
ATAACCAAGGCAGTCTCCTC+CGG 0.505709 4_1:+1805955 None:intergenic
CAATTGATCTACAGAAACTT+AGG 0.505738 4_1:-1806484 Msa0528840:CDS
ATGGAAAGAAAGGATCAAAT+CGG 0.506036 4_1:+1809310 None:intergenic
ACAGGTTCACGAAAAGAGAA+TGG 0.506682 4_1:-1805183 Msa0528840:CDS
CATGCCTGCAGCTTGTAAAG+TGG 0.508006 4_1:+1804637 Msa0528830:three_prime_UTR
CCGAGGATCTCAAGCGGATG+AGG 0.509548 4_1:-1806292 Msa0528840:intron
TAGCCAGCTCTTCCATATCA+AGG 0.509727 4_1:+1803388 Msa0528830:intron
TATGCATACACCTTGACACT+GGG 0.512341 4_1:+1803664 Msa0528830:CDS
GTCTGAAGAAAGGAGATCCC+AGG 0.512801 4_1:-1805995 Msa0528840:CDS
TACAACTATACTGAATTTGG+TGG 0.513828 4_1:+1804803 Msa0528830:three_prime_UTR
GCAGTCTCCTCCGGTGTCAA+AGG 0.517244 4_1:+1805964 None:intergenic
GTGTCAAAGGACATAGACCC+TGG 0.517880 4_1:+1805977 None:intergenic
TGGGTTGTAATAATTGTGGC+CGG 0.524912 4_1:-1804611 Msa0528840:three_prime_UTR
CACATTCATAACTGTGCAGT+TGG 0.525016 4_1:+1803545 Msa0528830:intron
GACACCGGAGGAGACTGCCT+TGG 0.525025 4_1:-1805959 Msa0528840:CDS
GCATCTACAAACTCATTCCA+TGG 0.525256 4_1:+1805212 Msa0528830:three_prime_UTR
GGAAGCATCCCTTCTGGAAG+AGG 0.525978 4_1:-1803784 Msa0528840:three_prime_UTR
GCCCATGAGCCGTGATAATG+AGG 0.527832 4_1:+1803894 Msa0528830:CDS
TGAAAATGGCTCCTTCCCTC+GGG 0.528010 4_1:-1804956 Msa0528840:three_prime_UTR
TTGAAGAGCTTCAAATTCTG+TGG 0.528024 4_1:-1809202 Msa0528840:five_prime_UTR
ATCTGAGATTAGTAGCACTA+GGG 0.531413 4_1:+1803809 Msa0528830:CDS
CTAAGAGTGTCCTGCAATGG+GGG 0.532495 4_1:-1807426 Msa0528840:CDS
TCTCCTGCCTTGACAGAAAG+GGG 0.533728 4_1:-1803219 Msa0528840:three_prime_UTR
CCTCATCCGCTTGAGATCCT+CGG 0.534275 4_1:+1806292 None:intergenic
GTTTGTAGATGCTGTGCGAC+AGG 0.534296 4_1:-1805201 Msa0528840:CDS
CTTGGACTTTGCGGTGAAAG+TGG 0.534968 4_1:+1804392 Msa0528830:CDS
CCTTTATTCCTACCTATGAT+GGG 0.535492 4_1:-1805462 Msa0528840:CDS
AGTTGGAATATTATCAAGAA+AGG 0.536592 4_1:+1804357 Msa0528830:CDS
ATCGCAAATGTAGCCTTCTA+CGG 0.536666 4_1:+1804530 Msa0528830:three_prime_UTR
AGAATTGGAACTAGACCAGT+TGG 0.537321 4_1:+1804340 Msa0528830:CDS
TGAAAAGTATTACTTGGAGC+AGG 0.539964 4_1:-1806980 Msa0528840:intron
CCAAAATCATTCATCACAGA+TGG 0.542359 4_1:-1805521 Msa0528840:CDS
CTTCAAATTCAATTCTGGGT+CGG 0.542473 4_1:-1809126 Msa0528840:five_prime_UTR
TCCTCATTATCACGGCTCAT+GGG 0.543503 4_1:-1803895 Msa0528840:three_prime_UTR
TGTCTCCCGGTCAAAACCTA+AGG 0.543702 4_1:+1805927 None:intergenic
AACTATACTGAATTTGGTGG+GGG 0.544382 4_1:+1804806 Msa0528830:three_prime_UTR
TATGAAGTCAAAGGACCAGC+TGG 0.544591 4_1:+1803159 Msa0528830:CDS
GAATTTGAAGCTGGTGAATG+AGG 0.546976 4_1:+1809139 None:intergenic
CTACAAACTCATTCCATGGA+AGG 0.551044 4_1:+1805216 Msa0528830:three_prime_UTR
GCAGGATCGCAAGCTGAAAG+AGG 0.551716 4_1:+1804226 Msa0528830:intron
TTGCGCCTCAGAATACAGCT+TGG 0.551987 4_1:-1803477 Msa0528840:three_prime_UTR
CACCTCAAGATGACCCCAGA+TGG 0.552036 4_1:-1803872 Msa0528840:three_prime_UTR
AAACGGCTCCTTGGAATCAA+AGG 0.552528 4_1:+1808826 None:intergenic
TCCCAAGAGAAAAGACCAGC+TGG 0.553440 4_1:-1803174 Msa0528840:three_prime_UTR
CCCCAGATTCTCAATTTGAG+GGG 0.555415 4_1:+1806430 None:intergenic
GAGATATGAGATGGACATGC+TGG 0.557518 4_1:-1806354 Msa0528840:CDS
ACTGTTCAGAGACTCCATCT+GGG 0.560536 4_1:+1803858 Msa0528830:CDS
CAGGTTCACGAAAAGAGAAT+GGG 0.560835 4_1:-1805182 Msa0528840:CDS
ATCAAAATGGAACCCTTCCA+TGG 0.561331 4_1:-1805229 Msa0528840:CDS
CAATGTAAATCTGTGTCTCC+CGG 0.564211 4_1:+1805914 None:intergenic
TTTCCTTCTCTCTCCATGAA+GGG 0.565721 4_1:+1806022 None:intergenic
CCCTCATGAGTGCCTTTGTG+AGG 0.571802 4_1:-1805096 Msa0528840:CDS
TCTAAGAGTGTCCTGCAATG+GGG 0.572836 4_1:-1807427 Msa0528840:CDS
CAACTATACTGAATTTGGTG+GGG 0.573463 4_1:+1804805 Msa0528830:three_prime_UTR
ACACAGATTTACATTGCAGC+CGG 0.575721 4_1:-1805907 Msa0528840:CDS
GGGTCTATGTCCTTTGACAC+CGG 0.576261 4_1:-1805974 Msa0528840:CDS
ACAATGATTCGACGATAAGT+CGG 0.577569 4_1:+1805155 Msa0528830:three_prime_UTR
TATAACCGCCCTCTTCCAGA+AGG 0.578293 4_1:+1803775 Msa0528830:CDS
CTCTAAGAACTTATGCCCGA+GGG 0.578429 4_1:+1804941 Msa0528830:three_prime_UTR
GTGACATGGTGACAATTGCT+CGG 0.579350 4_1:-1807292 Msa0528840:CDS
TGGGAACATGGCAAAACTTG+TGG 0.580054 4_1:-1805443 Msa0528840:CDS
ATGATCATCTGTAGTCACTC+TGG 0.581191 4_1:-1803133 Msa0528840:three_prime_UTR
GATCATGCTTATGAAGTCAA+AGG 0.581508 4_1:+1803150 Msa0528830:CDS
TAGGTGCCGTGTTAATTACC+AGG 0.582283 4_1:-1806465 Msa0528840:CDS
AGATCTCATCAATTTGCCGC+AGG 0.582417 4_1:-1804307 Msa0528840:three_prime_UTR
GATTCAGATACTTCGCGAGA+GGG 0.583952 4_1:-1806399 Msa0528840:CDS
TATCTGAGATTAGTAGCACT+AGG 0.584493 4_1:+1803808 Msa0528830:CDS
GTTCATTCTCTATGTAATCA+CGG 0.584697 4_1:-1804732 Msa0528840:three_prime_UTR
ATATGCATACACCTTGACAC+TGG 0.586569 4_1:+1803663 Msa0528830:CDS
TGTAGACAAACCAAAGGAGG+AGG 0.587728 4_1:-1805135 Msa0528840:CDS
CTCGGATATCCCCAGTGTCA+AGG 0.587901 4_1:-1803674 Msa0528840:three_prime_UTR
TACAAACTCATTCCATGGAA+GGG 0.592326 4_1:+1805217 Msa0528830:three_prime_UTR
AATTTGAAGCTGGTGAATGA+GGG 0.594717 4_1:+1809140 None:intergenic
GGTAGGAATAAAGGTGTCAC+CGG 0.594798 4_1:+1805471 None:intergenic
ACAAAGGCACTCATGAGGGT+TGG 0.596296 4_1:+1805100 Msa0528830:three_prime_UTR
CCCTCACAAAGGCACTCATG+AGG 0.597403 4_1:+1805095 Msa0528830:three_prime_UTR
TAGCAGTCGGAATAAGAGAA+GGG 0.598131 4_1:+1804273 Msa0528830:CDS
AAGAACTTATGCCCGAGGGA+AGG 0.599553 4_1:+1804945 Msa0528830:three_prime_UTR
GCAATCCAAGCTGTATTCTG+AGG 0.600078 4_1:+1803472 Msa0528830:intron
GTAGACGTTGCTGAGACCAA+TGG 0.600772 4_1:+1803721 Msa0528830:CDS
TCAAGGCTTGCAATAGCAGT+CGG 0.600784 4_1:+1804260 Msa0528830:CDS
CACACTTTGTTCCCTCACAA+AGG 0.600880 4_1:+1805084 Msa0528830:three_prime_UTR
AACTTGTGGAAGGCCACCGC+AGG 0.602466 4_1:-1805429 Msa0528840:intron
CCTCACAAAGGCACTCATGA+GGG 0.602588 4_1:+1805096 Msa0528830:three_prime_UTR
TGGAATATTATCAAGAAAGG+AGG 0.602703 4_1:+1804360 Msa0528830:CDS
GCCATGTTCCCATCATAGGT+AGG 0.602990 4_1:+1805454 None:intergenic
CCCCTCAAATTGAGAATCTG+GGG 0.605300 4_1:-1806430 Msa0528840:CDS
CTCCTGCCTTGACAGAAAGG+GGG 0.606795 4_1:-1803218 Msa0528840:three_prime_UTR
ACAACTCAACGGCCTCCTCA+AGG 0.607711 4_1:-1808679 Msa0528840:CDS
ATTCTGTGGACACAATTTGG+TGG 0.607748 4_1:-1809188 Msa0528840:five_prime_UTR
ATAGCAGTCGGAATAAGAGA+AGG 0.608578 4_1:+1804272 Msa0528830:CDS
AACATGGCAAAACTTGTGGA+AGG 0.609196 4_1:-1805439 Msa0528840:CDS
CCTCATGAGTGCCTTTGTGA+GGG 0.609759 4_1:-1805095 Msa0528840:CDS
TTATCAAGAAAGGAGGCTCA+AGG 0.609776 4_1:+1804367 Msa0528830:CDS
TCCTACCTATGATGGGAACA+TGG 0.610654 4_1:-1805455 Msa0528840:CDS
TCTCTAAGAACTTATGCCCG+AGG 0.611187 4_1:+1804940 Msa0528830:three_prime_UTR
GGGTTGTAATAATTGTGGCC+GGG 0.612240 4_1:-1804610 Msa0528840:three_prime_UTR
TTTGAATCAAATGCGTGCAG+CGG 0.612731 4_1:-1807403 Msa0528840:intron
ACAAAGTGTGATGATTTGCT+AGG 0.614058 4_1:-1805071 Msa0528840:CDS
AATGGAAGTTAGATCATCAG+AGG 0.614061 4_1:-1808890 Msa0528840:CDS
GGCATTTCAGATTTGTGACA+TGG 0.614628 4_1:-1807306 Msa0528840:intron
CATTGTAGACAAACCAAAGG+AGG 0.615228 4_1:-1805138 Msa0528840:CDS
TTCACCACCATAAATCTCAC+CGG 0.615230 4_1:+1805888 None:intergenic
ACTGTTGTTTGTATCTCTTG+AGG 0.620279 4_1:+1804483 Msa0528830:three_prime_UTR
GGTGAAAGTGGTGATGTCCT+TGG 0.620946 4_1:+1804404 Msa0528830:CDS
TCATTTGACCAGCTAACAGG+AGG 0.621119 4_1:+1807000 None:intergenic
CATTCAATCAACCTTTAAAG+GGG 0.622188 4_1:+1804568 Msa0528830:three_prime_UTR
GAAGCTGGTGAATGAGGGTG+AGG 0.622694 4_1:+1809145 None:intergenic
AGGAATTGAGGAACAAGGTG+AGG 0.623145 4_1:+1809276 None:intergenic
ACCTAAGGCTTGCATAACCA+AGG 0.627242 4_1:+1805942 None:intergenic
GGTTGTGTGATAACCAGCAA+GGG 0.628035 4_1:-1803956 Msa0528840:three_prime_UTR
TGGTTGTGTGATAACCAGCA+AGG 0.629031 4_1:-1803957 Msa0528840:three_prime_UTR
GTATATATCACACAACTCAA+CGG 0.629814 4_1:-1808690 Msa0528840:CDS
GAAAAGTGGATACTCGACCC+TGG 0.636896 4_1:-1807028 Msa0528840:CDS
AGCAGTCGGAATAAGAGAAG+GGG 0.636940 4_1:+1804274 Msa0528830:CDS
AATCATTGTAGACAAACCAA+AGG 0.637419 4_1:-1805141 Msa0528840:CDS
ATTCAGATACTTCGCGAGAG+GGG 0.637675 4_1:-1806398 Msa0528840:CDS
GAACTGCTGTAACTCATCAA+GGG 0.638982 4_1:+1805543 None:intergenic
GAAGCATCCCTTCTGGAAGA+GGG 0.639736 4_1:-1803783 Msa0528840:three_prime_UTR
ATACTAGCTCCTCATTATCA+CGG 0.640006 4_1:-1803903 Msa0528840:three_prime_UTR
ATATAAGGAATTGAGGAACA+AGG 0.641155 4_1:+1809271 None:intergenic
TCTGAAGAAAGGAGATCCCA+GGG 0.644505 4_1:-1805994 Msa0528840:CDS
TGTCAAAGGACATAGACCCT+GGG 0.644623 4_1:+1805978 None:intergenic
TTTGTTCAACCATTGTGCTG+TGG 0.645471 4_1:-1808783 Msa0528840:CDS
TGGTTGTGAAAAGTGTGTGA+AGG 0.647524 4_1:-1808951 Msa0528840:five_prime_UTR
CTGTAGTCACTCTGGCACTG+TGG 0.648083 4_1:-1803125 Msa0528840:three_prime_UTR
TGATTCAGATACTTCGCGAG+AGG 0.649037 4_1:-1806400 Msa0528840:CDS
ATTCCCTTCATGGAGAGAGA+AGG 0.650807 4_1:-1806025 Msa0528840:CDS
TGAAGGTTATGGTGATGAAG+TGG 0.651256 4_1:-1808934 Msa0528840:five_prime_UTR
CTTGCAGGAAGTAGAATGGG+AGG 0.651294 4_1:+1808634 None:intergenic
GTAATGGGTTGTAATAATTG+TGG 0.651529 4_1:-1804615 Msa0528840:three_prime_UTR
ATAACCGCCCTCTTCCAGAA+GGG 0.651691 4_1:+1803776 Msa0528830:CDS
TGATTCCAATAAGAAAGCAT+CGG 0.654051 4_1:-1803836 Msa0528840:three_prime_UTR
AATATAACATCTCCTTGAGG+AGG 0.657753 4_1:+1808667 None:intergenic
TAAGTGCCTGGTAATTAACA+CGG 0.657828 4_1:+1806459 None:intergenic
ATGGAAGTTAGATCATCAGA+GGG 0.666260 4_1:-1808889 Msa0528840:CDS
TTGCACTAATGAAGAAGCCG+AGG 0.669813 4_1:-1806309 Msa0528840:CDS
TCTGAGATTAGTAGCACTAG+GGG 0.673869 4_1:+1803810 Msa0528830:CDS
CTGTTCAGAGACTCCATCTG+GGG 0.675062 4_1:+1803859 Msa0528830:CDS
CAAACATGTCCACAGCACAA+TGG 0.677892 4_1:+1808774 None:intergenic
TGTGTGATAACCAGCAAGGG+CGG 0.678647 4_1:-1803953 Msa0528840:three_prime_UTR
AAGAAGCCGAGGATCTCAAG+CGG 0.678663 4_1:-1806298 Msa0528840:CDS
GCTAACAGGAGGCATCTCCA+GGG 0.682429 4_1:+1807011 None:intergenic
ATTGCATCTGAGATATGAGA+TGG 0.683390 4_1:-1806363 Msa0528840:CDS
ATGCATACACCTTGACACTG+GGG 0.698561 4_1:+1803665 Msa0528830:CDS
TCTATGTCCTTTGACACCGG+AGG 0.698582 4_1:-1805971 Msa0528840:CDS
GCAAATATAACATCTCCTTG+AGG 0.698776 4_1:+1808664 None:intergenic
GTTCCGGAACAACCAATGTG+AGG 0.701296 4_1:+1807261 None:intergenic
GCATCCCTTCTGGAAGAGGG+CGG 0.703925 4_1:-1803780 Msa0528840:three_prime_UTR
GCAGCCGGTGAGATTTATGG+TGG 0.721413 4_1:-1805892 Msa0528840:CDS
GAGTAAATAGATACCTGCGG+TGG 0.724695 4_1:+1805416 None:intergenic
CTGAGATTAGTAGCACTAGG+GGG 0.740933 4_1:+1803811 Msa0528830:CDS
TGAGGAGCTAGTATGCAAAG+CGG 0.776917 4_1:+1803912 Msa0528830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTAAAAGACTTTAA+CGG - chr4_1:1803252-1803271 Msa0528840:intron 10.0%
!!! TTTTAAGAAAGAAAAATATA+AGG + chr4_1:1803552-1803571 Msa0528830:intron 10.0%
!!! AATAAGATATATATTTCTTT+TGG + chr4_1:1807478-1807497 None:intergenic 10.0%
!! ATAGAAATTTCAAATAATCT+TGG + chr4_1:1803181-1803200 Msa0528830:CDS 15.0%
!! AAAAAAAGAGATTACAAAAT+GGG + chr4_1:1803220-1803239 Msa0528830:CDS 15.0%
!! ATTTAGCAATAATAGTAATA+TGG - chr4_1:1804323-1804342 Msa0528840:three_prime_UTR 15.0%
!!! TTAACTTTAAAAAGTAACTA+TGG + chr4_1:1804437-1804456 Msa0528830:exon 15.0%
!!! TAAATGGATTTATTGATTTT+TGG + chr4_1:1804865-1804884 Msa0528830:three_prime_UTR 15.0%
!!! AATTTTCCTTTAAATATGAT+AGG - chr4_1:1805016-1805035 Msa0528840:three_prime_UTR 15.0%
!!! AAAGTTGTTTTTTTTTATTC+TGG - chr4_1:1805658-1805677 Msa0528840:intron 15.0%
!! TGAAAAGATATACATAAAAA+AGG + chr4_1:1806565-1806584 None:intergenic 15.0%
!!! ATATTTCTTTTGGAAATTTA+GGG + chr4_1:1807468-1807487 None:intergenic 15.0%
!!! TATATTTCTTTTGGAAATTT+AGG + chr4_1:1807469-1807488 None:intergenic 15.0%
!!! TTTTGTATACATTATTTTGT+AGG - chr4_1:1807889-1807908 Msa0528840:intron 15.0%
!! GAAAAAAAGAGATTACAAAA+TGG + chr4_1:1803221-1803240 Msa0528830:CDS 20.0%
!!! ATTTTTATTCACATTCAAGT+GGG + chr4_1:1803449-1803468 Msa0528830:intron 20.0%
!! AAGAAAAATATAAGGAATTG+AGG + chr4_1:1803544-1803563 Msa0528830:intron 20.0%
!! TTGCTAAATTAAATCATATG+TGG + chr4_1:1804312-1804331 Msa0528830:CDS 20.0%
!! TTAAACATATGATTAGTAGT+TGG - chr4_1:1804453-1804472 Msa0528840:three_prime_UTR 20.0%
!! TAAACATATGATTAGTAGTT+GGG - chr4_1:1804454-1804473 Msa0528840:three_prime_UTR 20.0%
!! TCTAAAAAAAACACAATGTT+AGG + chr4_1:1804525-1804544 Msa0528830:three_prime_UTR 20.0%
!!! AACATTGTGTTTTTTTTAGA+TGG - chr4_1:1804525-1804544 Msa0528840:three_prime_UTR 20.0%
!! AAAAAAAATTCTTTCCCAAA+GGG + chr4_1:1804601-1804620 Msa0528830:three_prime_UTR 20.0%
!! AAAAAAAAATTCTTTCCCAA+AGG + chr4_1:1804602-1804621 Msa0528830:three_prime_UTR 20.0%
!!! TTTTCTGTTTGTTATATAGT+AGG - chr4_1:1804632-1804651 Msa0528840:three_prime_UTR 20.0%
!!! CAACAATAGTTTAAAATAAG+TGG + chr4_1:1804941-1804960 Msa0528830:three_prime_UTR 20.0%
!!! AAAGTACCTATCATATTTAA+AGG + chr4_1:1805025-1805044 Msa0528830:three_prime_UTR 20.0%
!! ACATAAGTAAGTGTAATATT+GGG + chr4_1:1805166-1805185 Msa0528830:three_prime_UTR 20.0%
!! AACATAAGTAAGTGTAATAT+TGG + chr4_1:1805167-1805186 Msa0528830:three_prime_UTR 20.0%
!! ATATAATAGGAATAAAGAAG+TGG + chr4_1:1805449-1805468 None:intergenic 20.0%
!! ATTGAAGCTTATCATATAAT+AGG + chr4_1:1805462-1805481 None:intergenic 20.0%
!! TTATGTATAATACATCAATC+AGG - chr4_1:1805882-1805901 Msa0528840:CDS 20.0%
!!! TTTAGAGTTATTATCAGATA+TGG - chr4_1:1805984-1806003 Msa0528840:CDS 20.0%
!!! AAAAGTACAAGTTTATGATA+TGG - chr4_1:1806050-1806069 Msa0528840:intron 20.0%
!!! TAGTATTTTAGCAACTAAAA+TGG - chr4_1:1806081-1806100 Msa0528840:intron 20.0%
!! ATATGTACTACTGAAAATAA+GGG + chr4_1:1806195-1806214 None:intergenic 20.0%
!! TATATGTACTACTGAAAATA+AGG + chr4_1:1806196-1806215 None:intergenic 20.0%
!! TCAATACTATAAACAAAAAG+GGG + chr4_1:1807008-1807027 None:intergenic 20.0%
!! GTCAATACTATAAACAAAAA+GGG + chr4_1:1807009-1807028 None:intergenic 20.0%
!! TGTCAATACTATAAACAAAA+AGG + chr4_1:1807010-1807029 None:intergenic 20.0%
!!! TTTACTTTAGGTTAAAAAAG+AGG - chr4_1:1807230-1807249 Msa0528840:CDS 20.0%
!!! TTTTAAAAAGTCCATCTTAT+TGG - chr4_1:1807520-1807539 Msa0528840:intron 20.0%
!! TTATACAACTATACTGAATT+TGG + chr4_1:1808008-1808027 None:intergenic 20.0%
!! TGTAATGAAATATATAGACA+CGG - chr4_1:1808736-1808755 Msa0528840:CDS 20.0%
!!! TGCTTTTGTTTAAATCATAT+TGG - chr4_1:1809214-1809233 Msa0528840:five_prime_UTR 20.0%
!!! ATTTTAAAAGACTTTAACGG+TGG - chr4_1:1803255-1803274 Msa0528840:intron 25.0%
!!! AATTTTCTTTCTAGTTAACC+TGG - chr4_1:1803284-1803303 Msa0528840:intron 25.0%
!! CATTTTTATTCACATTCAAG+TGG + chr4_1:1803450-1803469 Msa0528830:intron 25.0%
!! TTGCAGATTTGTGTTAATTT+TGG - chr4_1:1803834-1803853 Msa0528840:three_prime_UTR 25.0%
! AGTAAATCCAGTAAAGAAAT+TGG + chr4_1:1804091-1804110 Msa0528830:intron 25.0%
! ATGGATTTAATGCATATTCA+CGG - chr4_1:1804342-1804361 Msa0528840:three_prime_UTR 25.0%
!! CAAACATTTTTAATGATCTG+AGG + chr4_1:1804407-1804426 Msa0528830:CDS 25.0%
! AAACATATGATTAGTAGTTG+GGG - chr4_1:1804455-1804474 Msa0528840:three_prime_UTR 25.0%
!!! GATTTTTGGTTAGAATCTAA+TGG + chr4_1:1804851-1804870 Msa0528830:three_prime_UTR 25.0%
! CATAAGTAAGTGTAATATTG+GGG + chr4_1:1805165-1805184 Msa0528830:three_prime_UTR 25.0%
! ACAAAATACTTATACGTAGA+TGG - chr4_1:1805239-1805258 Msa0528840:CDS 25.0%
! CAAAATACTTATACGTAGAT+GGG - chr4_1:1805240-1805259 Msa0528840:CDS 25.0%
! CAATGTTTAATTACCAGATT+TGG - chr4_1:1805478-1805497 Msa0528840:CDS 25.0%
!! AACTTGATAAGAAATCCTTT+TGG - chr4_1:1805564-1805583 Msa0528840:CDS 25.0%
!! ACTTGATAAGAAATCCTTTT+GGG - chr4_1:1805565-1805584 Msa0528840:CDS 25.0%
! CATAACAAATGATATACCTA+CGG + chr4_1:1805595-1805614 None:intergenic 25.0%
!! CTTTTCCTAGTAAACTTTTT+GGG + chr4_1:1805763-1805782 None:intergenic 25.0%
!! ACTTTTCCTAGTAAACTTTT+TGG + chr4_1:1805764-1805783 None:intergenic 25.0%
! AAAAAGTTTACTAGGAAAAG+TGG - chr4_1:1805763-1805782 Msa0528840:intron 25.0%
!!! GTCAAATGAAAAGTATTACT+TGG - chr4_1:1805819-1805838 Msa0528840:intron 25.0%
! TTAAAGTTTGATACAGTGAT+TGG - chr4_1:1805924-1805943 Msa0528840:CDS 25.0%
! TGGTTAATGATTCTTTGATA+TGG - chr4_1:1805944-1805963 Msa0528840:CDS 25.0%
!!! AACATAGATAAAGTGCTTTT+TGG + chr4_1:1806136-1806155 None:intergenic 25.0%
! TAAGTTTCTGTAGATCAATT+GGG + chr4_1:1806322-1806341 None:intergenic 25.0%
!! TATATCTTTTCATGAGCAAT+AGG - chr4_1:1806573-1806592 Msa0528840:intron 25.0%
! GCAACACAAATTATAAAAGA+AGG + chr4_1:1806600-1806619 None:intergenic 25.0%
! CAATACTATAAACAAAAAGG+GGG + chr4_1:1807007-1807026 None:intergenic 25.0%
! ATTCCACTTTACTTTACTTT+AGG - chr4_1:1807218-1807237 Msa0528840:intron 25.0%
! TAACCTAAAGTAAAGTAAAG+TGG + chr4_1:1807224-1807243 None:intergenic 25.0%
!! TTAGGTTAAAAAAGAGGTAT+TGG - chr4_1:1807236-1807255 Msa0528840:CDS 25.0%
! ATCTAATATAGAAGCTATTC+TGG - chr4_1:1807429-1807448 Msa0528840:CDS 25.0%
!!! TAAGATGGACTTTTTAAAAC+CGG + chr4_1:1807519-1807538 None:intergenic 25.0%
!!! ATTATTTTGTAGGAAACCAT+GGG - chr4_1:1807899-1807918 Msa0528840:intron 25.0%
! GAAATATATGTTCCATATAG+AGG - chr4_1:1807938-1807957 Msa0528840:intron 25.0%
!!! AAGATTAGAAGTATTTTGCA+AGG - chr4_1:1808375-1808394 Msa0528840:intron 25.0%
! AGTTGGAATATTATCAAGAA+AGG + chr4_1:1808451-1808470 None:intergenic 25.0%
!! TTTCTTGATAATATTCCAAC+TGG - chr4_1:1808450-1808469 Msa0528840:intron 25.0%
! GGTAATAAACTATACATTCA+GGG + chr4_1:1808821-1808840 None:intergenic 25.0%
! AGGTAATAAACTATACATTC+AGG + chr4_1:1808822-1808841 None:intergenic 25.0%
! ATAGTTTATTACCTGTTCAA+TGG - chr4_1:1808828-1808847 Msa0528840:CDS 25.0%
! ATGAAAAGAAACATATGAAG+AGG - chr4_1:1809545-1809564 Msa0528840:five_prime_UTR 25.0%
!!! CAGTTTTTTAATTGTGTGCA+TGG + chr4_1:1803342-1803361 Msa0528830:intron 30.0%
ATGGAAAGAAAGGATCAAAT+CGG + chr4_1:1803498-1803517 Msa0528830:intron 30.0%
ATATAAGGAATTGAGGAACA+AGG + chr4_1:1803537-1803556 Msa0528830:intron 30.0%
GAATAAACCAAACACGAAAA+CGG + chr4_1:1803999-1804018 Msa0528830:intron 30.0%
GTATATATCACACAACTCAA+CGG - chr4_1:1804115-1804134 Msa0528840:intron 30.0%
! AGATAGAAAAACTAACTTGC+AGG + chr4_1:1804189-1804208 Msa0528830:intron 30.0%
!! AATGTTTTTGTTTGCTTGAG+TGG - chr4_1:1804230-1804249 Msa0528840:three_prime_UTR 30.0%
! TATGTGTTGATAAACCCTTT+GGG - chr4_1:1804584-1804603 Msa0528840:three_prime_UTR 30.0%
ATTTGTGTGAAGAATCAGTT+AGG - chr4_1:1804662-1804681 Msa0528840:three_prime_UTR 30.0%
GATGGTCAATATCAACTAAT+TGG + chr4_1:1804721-1804740 Msa0528830:three_prime_UTR 30.0%
! GGAAGTACAAAAAAACATGA+TGG + chr4_1:1804739-1804758 Msa0528830:three_prime_UTR 30.0%
CAAAGCAAATAATCTCTAAC+AGG + chr4_1:1804760-1804779 Msa0528830:three_prime_UTR 30.0%
AGACTTCACTCTAAACTAAA+TGG + chr4_1:1804881-1804900 Msa0528830:three_prime_UTR 30.0%
!!! ATAAGTGGATCCACTTTTTT+GGG + chr4_1:1804926-1804945 Msa0528830:three_prime_UTR 30.0%
!!! AATAAGTGGATCCACTTTTT+TGG + chr4_1:1804927-1804946 Msa0528830:three_prime_UTR 30.0%
AAATTCTACTGAACAGCTAA+AGG + chr4_1:1805001-1805020 Msa0528830:three_prime_UTR 30.0%
TATATACAAGGACTCATACA+GGG + chr4_1:1805090-1805109 Msa0528830:three_prime_UTR 30.0%
TTATATACAAGGACTCATAC+AGG + chr4_1:1805091-1805110 Msa0528830:three_prime_UTR 30.0%
TGATGGGGATATTATATACA+AGG + chr4_1:1805102-1805121 Msa0528830:three_prime_UTR 30.0%
GCAGGAAATTATACTAGTAA+TGG - chr4_1:1805352-1805371 Msa0528840:intron 30.0%
TAATAGGAATAAAGAAGTGG+TGG + chr4_1:1805446-1805465 None:intergenic 30.0%
AAGGATTTCTTATCAAGTTC+CGG + chr4_1:1805563-1805582 None:intergenic 30.0%
!!! GTTTTTTTTTATTCTGGCAG+TGG - chr4_1:1805664-1805683 Msa0528840:intron 30.0%
GTACAAGTTTATGATATGGA+TGG - chr4_1:1806054-1806073 Msa0528840:intron 30.0%
TACTACTGAAAATAAGGGAA+GGG + chr4_1:1806190-1806209 None:intergenic 30.0%
CTAAGTTTCTGTAGATCAAT+TGG + chr4_1:1806323-1806342 None:intergenic 30.0%
CAATTGATCTACAGAAACTT+AGG - chr4_1:1806321-1806340 Msa0528840:CDS 30.0%
! TAAAAAAGGCATAGCAAAAC+AGG + chr4_1:1806551-1806570 None:intergenic 30.0%
!! GTTGCATGATTTGTTGAATT+TGG - chr4_1:1806615-1806634 Msa0528840:intron 30.0%
! ATTAAGAGTCTTGTGTTCAA+AGG - chr4_1:1806682-1806701 Msa0528840:intron 30.0%
! AATGGTGAACTCACAATTTT+TGG + chr4_1:1806973-1806992 None:intergenic 30.0%
GGGAGGATACAAATTATAAA+TGG + chr4_1:1807094-1807113 None:intergenic 30.0%
TTAGGATGAAGAAATGCATA+AGG + chr4_1:1807173-1807192 None:intergenic 30.0%
TTGCTTGATATGCATCAAAA+TGG - chr4_1:1807563-1807582 Msa0528840:intron 30.0%
AATCATTGTAGACAAACCAA+AGG - chr4_1:1807664-1807683 Msa0528840:intron 30.0%
!! CATTATTTTGTAGGAAACCA+TGG - chr4_1:1807898-1807917 Msa0528840:intron 30.0%
!! TTATTTTGTAGGAAACCATG+GGG - chr4_1:1807900-1807919 Msa0528840:intron 30.0%
!! CTATTTTTCTTTTTTCCCCA+TGG + chr4_1:1807918-1807937 None:intergenic 30.0%
CATGGGGAAAAAAGAAAAAT+AGG - chr4_1:1807916-1807935 Msa0528840:intron 30.0%
ACAACTATACTGAATTTGGT+GGG + chr4_1:1808004-1808023 None:intergenic 30.0%
TACAACTATACTGAATTTGG+TGG + chr4_1:1808005-1808024 None:intergenic 30.0%
GTTCATTCTCTATGTAATCA+CGG - chr4_1:1808073-1808092 Msa0528840:intron 30.0%
!! GTAATGGGTTGTAATAATTG+TGG - chr4_1:1808190-1808209 Msa0528840:intron 30.0%
! CATTCAATCAACCTTTAAAG+GGG + chr4_1:1808240-1808259 None:intergenic 30.0%
GCATTCAATCAACCTTTAAA+GGG + chr4_1:1808241-1808260 None:intergenic 30.0%
TGCATTCAATCAACCTTTAA+AGG + chr4_1:1808242-1808261 None:intergenic 30.0%
AACAACAGTATGTCATTAAC+TGG - chr4_1:1808336-1808355 Msa0528840:intron 30.0%
CAAAATACTTCTAATCTTGC+AGG + chr4_1:1808373-1808392 None:intergenic 30.0%
TGGAATATTATCAAGAAAGG+AGG + chr4_1:1808448-1808467 None:intergenic 30.0%
! TTGCATTTTACGTAGTACAT+GGG + chr4_1:1808670-1808689 None:intergenic 30.0%
! ATTGCATTTTACGTAGTACA+TGG + chr4_1:1808671-1808690 None:intergenic 30.0%
TATTCTCATTACCATCATGT+TGG - chr4_1:1808793-1808812 Msa0528840:CDS 30.0%
! TGATTCCAATAAGAAAGCAT+CGG - chr4_1:1808969-1808988 Msa0528840:intron 30.0%
TCTACTTTGTCGTCAAAAAA+AGG - chr4_1:1809102-1809121 Msa0528840:five_prime_UTR 30.0%
CTACTTTGTCGTCAAAAAAA+GGG - chr4_1:1809103-1809122 Msa0528840:five_prime_UTR 30.0%
! TTTTCATGCTTCTCAATTCT+TGG + chr4_1:1809287-1809306 None:intergenic 30.0%
! ATGCTTCTTTTTCCTTGATA+TGG - chr4_1:1809405-1809424 Msa0528840:five_prime_UTR 30.0%
AATTGTGTGCATGGATTCAA+AGG + chr4_1:1803333-1803352 Msa0528830:intron 35.0%
TCGGAGAAAAATCACAAAGA+AGG + chr4_1:1803479-1803498 Msa0528830:intron 35.0%
TCCTTTCTTTCCATTCTCAT+TGG - chr4_1:1803504-1803523 Msa0528840:three_prime_UTR 35.0%
TCCAATGAGAATGGAAAGAA+AGG + chr4_1:1803508-1803527 Msa0528830:intron 35.0%
TTGAAGAGCTTCAAATTCTG+TGG - chr4_1:1803603-1803622 Msa0528840:three_prime_UTR 35.0%
CAAATTCTGTGGACACAATT+TGG - chr4_1:1803614-1803633 Msa0528840:three_prime_UTR 35.0%
! AATTTGAAGCTGGTGAATGA+GGG + chr4_1:1803668-1803687 Msa0528830:CDS 35.0%
ACCAGCTTCAAATTCAATTC+TGG - chr4_1:1803674-1803693 Msa0528840:three_prime_UTR 35.0%
CCAGCTTCAAATTCAATTCT+GGG - chr4_1:1803675-1803694 Msa0528840:three_prime_UTR 35.0%
CTTCAAATTCAATTCTGGGT+CGG - chr4_1:1803679-1803698 Msa0528840:three_prime_UTR 35.0%
! AAGTGAATCTCACTGTTTTG+AGG + chr4_1:1803724-1803743 Msa0528830:CDS 35.0%
TCACTTTGTTGCAGTGTTTA+AGG - chr4_1:1803738-1803757 Msa0528840:three_prime_UTR 35.0%
TACATTGCAAAGTGACTCTA+TGG + chr4_1:1803780-1803799 Msa0528830:CDS 35.0%
! TGAAAAGTGTGTGAAGGTTA+TGG - chr4_1:1803860-1803879 Msa0528840:three_prime_UTR 35.0%
TGAAGTGTGTGACAAAGAAA+TGG - chr4_1:1803897-1803916 Msa0528840:three_prime_UTR 35.0%
AATGGAAGTTAGATCATCAG+AGG - chr4_1:1803915-1803934 Msa0528840:three_prime_UTR 35.0%
ATGGAAGTTAGATCATCAGA+GGG - chr4_1:1803916-1803935 Msa0528840:three_prime_UTR 35.0%
TGGCATTCCAATTTCTTTAC+TGG - chr4_1:1804081-1804100 Msa0528840:intron 35.0%
AATATAACATCTCCTTGAGG+AGG + chr4_1:1804141-1804160 Msa0528830:intron 35.0%
GCAAATATAACATCTCCTTG+AGG + chr4_1:1804144-1804163 Msa0528830:intron 35.0%
! TAACTTGCAGGAAGTAGAAT+GGG + chr4_1:1804177-1804196 Msa0528830:intron 35.0%
ATCATGCTTAGCTGAATGTT+GGG - chr4_1:1804553-1804572 Msa0528840:three_prime_UTR 35.0%
! GTATGTGTTGATAAACCCTT+TGG - chr4_1:1804583-1804602 Msa0528840:three_prime_UTR 35.0%
!! ATTTGCTTTGTTGCGTTTTG+TGG - chr4_1:1804770-1804789 Msa0528840:three_prime_UTR 35.0%
GGGGTACACTAAAAAGATTA+GGG + chr4_1:1804906-1804925 Msa0528830:three_prime_UTR 35.0%
TGGGGTACACTAAAAAGATT+AGG + chr4_1:1804907-1804926 Msa0528830:three_prime_UTR 35.0%
TTTAGTGTACCCCAAAAAAG+TGG - chr4_1:1804913-1804932 Msa0528840:three_prime_UTR 35.0%
!!! TAAGTGGATCCACTTTTTTG+GGG + chr4_1:1804925-1804944 Msa0528830:three_prime_UTR 35.0%
! TACTTATACGTAGATGGGTT+TGG - chr4_1:1805245-1805264 Msa0528840:CDS 35.0%
! TAAAGAAGTGGTGGAAGAAT+AGG + chr4_1:1805437-1805456 None:intergenic 35.0%
! CAAATCTGAAATGCCAAATC+TGG + chr4_1:1805494-1805513 None:intergenic 35.0%
GAGTTCCCAAAAAGTTTACT+AGG - chr4_1:1805755-1805774 Msa0528840:intron 35.0%
! TTTTCATTTGACCAGCTAAC+AGG + chr4_1:1805811-1805830 None:intergenic 35.0%
!! TGAAAAGTATTACTTGGAGC+AGG - chr4_1:1805825-1805844 Msa0528840:intron 35.0%
ACTACTGAAAATAAGGGAAG+GGG + chr4_1:1806189-1806208 None:intergenic 35.0%
GTACTACTGAAAATAAGGGA+AGG + chr4_1:1806191-1806210 None:intergenic 35.0%
TAAGTGCCTGGTAATTAACA+CGG + chr4_1:1806349-1806368 None:intergenic 35.0%
! ATTGCATCTGAGATATGAGA+TGG - chr4_1:1806442-1806461 Msa0528840:CDS 35.0%
GTAATGATCTGACAAATGAG+AGG - chr4_1:1806710-1806729 Msa0528840:intron 35.0%
AGGAAATAGTGTCTGAAGAA+AGG - chr4_1:1806800-1806819 Msa0528840:intron 35.0%
ACTATAAACAAAAAGGGGGA+GGG + chr4_1:1807003-1807022 None:intergenic 35.0%
TACTATAAACAAAAAGGGGG+AGG + chr4_1:1807004-1807023 None:intergenic 35.0%
GCATTTCTTCATCCTAATCA+TGG - chr4_1:1807176-1807195 Msa0528840:intron 35.0%
AACAAGCAGTAACCATGATT+AGG + chr4_1:1807191-1807210 None:intergenic 35.0%
! CCATCTGTGATGAATGATTT+TGG + chr4_1:1807287-1807306 None:intergenic 35.0%
CCAAAATCATTCATCACAGA+TGG - chr4_1:1807284-1807303 Msa0528840:CDS 35.0%
! TGCTTTGGATTTCATGGTTT+CGG - chr4_1:1807308-1807327 Msa0528840:intron 35.0%
ACCTTTATTCCTACCTATGA+TGG - chr4_1:1807342-1807361 Msa0528840:intron 35.0%
CCTTTATTCCTACCTATGAT+GGG - chr4_1:1807343-1807362 Msa0528840:intron 35.0%
AAAAGTCCATCTTATTGGAC+CGG - chr4_1:1807525-1807544 Msa0528840:intron 35.0%
TACAAACTCATTCCATGGAA+GGG + chr4_1:1807591-1807610 None:intergenic 35.0%
ACAATGATTCGACGATAAGT+CGG + chr4_1:1807653-1807672 None:intergenic 35.0%
TAGAAATAATCCTCCTCCTT+TGG + chr4_1:1807683-1807702 None:intergenic 35.0%
!! ACAAAGTGTGATGATTTGCT+AGG - chr4_1:1807734-1807753 Msa0528840:intron 35.0%
CTTACTTGAGTAGAGTTATG+AGG + chr4_1:1807761-1807780 None:intergenic 35.0%
AGATTGCTCTTGCATACTTA+TGG + chr4_1:1807830-1807849 None:intergenic 35.0%
ATGCAAGAGCAATCTGAAAA+TGG - chr4_1:1807835-1807854 Msa0528840:intron 35.0%
TTTGGTGGGGGAAAAAATAA+GGG + chr4_1:1807990-1808009 None:intergenic 35.0%
! ATTTGGTGGGGGAAAAAATA+AGG + chr4_1:1807991-1808010 None:intergenic 35.0%
! AACTATACTGAATTTGGTGG+GGG + chr4_1:1808002-1808021 None:intergenic 35.0%
! CAACTATACTGAATTTGGTG+GGG + chr4_1:1808003-1808022 None:intergenic 35.0%
GGATGAAAAAACTGAACACT+TGG + chr4_1:1808304-1808323 None:intergenic 35.0%
! ACTGTTGTTTGTATCTCTTG+AGG + chr4_1:1808325-1808344 None:intergenic 35.0%
AAGAGGCAAATCTAGATTCA+AGG + chr4_1:1808565-1808584 None:intergenic 35.0%
GAACAAAGCATACAAATTGC+AGG + chr4_1:1808600-1808619 None:intergenic 35.0%
GTACTACGTAAAATGCAATG+AGG - chr4_1:1808672-1808691 Msa0528840:CDS 35.0%
TTATCACACAACCATTGAAC+AGG + chr4_1:1808842-1808861 None:intergenic 35.0%
ATACTAGCTCCTCATTATCA+CGG - chr4_1:1808902-1808921 Msa0528840:exon 35.0%
! ATCTGAGATTAGTAGCACTA+GGG + chr4_1:1808999-1809018 None:intergenic 35.0%
! TATCTGAGATTAGTAGCACT+AGG + chr4_1:1809000-1809019 None:intergenic 35.0%
! AGTGCTACTAATCTCAGATA+TGG - chr4_1:1809000-1809019 Msa0528840:intron 35.0%
TATGCATATCGATCTGCATT+TGG - chr4_1:1809156-1809175 Msa0528840:five_prime_UTR 35.0%
AAACAAAAGCAATGCAGAGT+TGG + chr4_1:1809205-1809224 None:intergenic 35.0%
!!! CAGTTGGTAACTTTTACTGT+AGG + chr4_1:1809247-1809266 None:intergenic 35.0%
GATCATGCTTATGAAGTCAA+AGG + chr4_1:1809658-1809677 None:intergenic 35.0%
GCAAGCAAGTTCTTCATCAT+TGG + chr4_1:1803142-1803161 Msa0528830:CDS 40.0%
GTAGATGAATTGAGAGATCC+AGG + chr4_1:1803305-1803324 Msa0528830:intron 40.0%
GTGCATGGATTCAAAGGTTT+GGG + chr4_1:1803327-1803346 Msa0528830:intron 40.0%
TGTGCATGGATTCAAAGGTT+TGG + chr4_1:1803328-1803347 Msa0528830:intron 40.0%
ATTCTGTGGACACAATTTGG+TGG - chr4_1:1803617-1803636 Msa0528840:three_prime_UTR 40.0%
! GAATTTGAAGCTGGTGAATG+AGG + chr4_1:1803669-1803688 Msa0528830:CDS 40.0%
! CCCAGAATTGAATTTGAAGC+TGG + chr4_1:1803678-1803697 Msa0528830:CDS 40.0%
TGCAAAGTGACTCTATGGAA+AGG + chr4_1:1803775-1803794 Msa0528830:CDS 40.0%
CAATGTACTTCTTACGTACG+AGG - chr4_1:1803793-1803812 Msa0528840:three_prime_UTR 40.0%
! TGGTTGTGAAAAGTGTGTGA+AGG - chr4_1:1803854-1803873 Msa0528840:three_prime_UTR 40.0%
! TGAAGGTTATGGTGATGAAG+TGG - chr4_1:1803871-1803890 Msa0528840:three_prime_UTR 40.0%
TTTGTTCAACCATTGTGCTG+TGG - chr4_1:1804022-1804041 Msa0528840:intron 40.0%
TTGTGACTGTGAGTGAACTA+TGG - chr4_1:1804061-1804080 Msa0528840:intron 40.0%
! CTAACTTGCAGGAAGTAGAA+TGG + chr4_1:1804178-1804197 Msa0528830:intron 40.0%
!!! AGTGGTTTTGTGATGTGGTT+TGG - chr4_1:1804248-1804267 Msa0528840:three_prime_UTR 40.0%
GGTTTGGAAATGTGTAGCTT+TGG - chr4_1:1804264-1804283 Msa0528840:three_prime_UTR 40.0%
GATCATGCTTAGCTGAATGT+TGG - chr4_1:1804552-1804571 Msa0528840:three_prime_UTR 40.0%
TCATGCTTAGCTGAATGTTG+GGG - chr4_1:1804554-1804573 Msa0528840:three_prime_UTR 40.0%
!! ATAACAGCCAAGTACTGAGT+AGG - chr4_1:1804801-1804820 Msa0528840:three_prime_UTR 40.0%
!! TAACAGCCAAGTACTGAGTA+GGG - chr4_1:1804802-1804821 Msa0528840:three_prime_UTR 40.0%
ATCTATCCCTACTCAGTACT+TGG + chr4_1:1804811-1804830 Msa0528830:three_prime_UTR 40.0%
CTCATACAGGGTCATTGAAA+TGG + chr4_1:1805078-1805097 Msa0528830:three_prime_UTR 40.0%
TTTCTGCTGGAGAGATTGAT+GGG + chr4_1:1805118-1805137 Msa0528830:three_prime_UTR 40.0%
! GACTCTTATTTGCTTTCTGC+TGG + chr4_1:1805131-1805150 Msa0528830:three_prime_UTR 40.0%
!! TTTCTAAGAGTGTCCTGCAA+TGG - chr4_1:1805376-1805395 Msa0528840:intron 40.0%
!! TTCTAAGAGTGTCCTGCAAT+GGG - chr4_1:1805377-1805396 Msa0528840:intron 40.0%
TTTGAATCAAATGCGTGCAG+CGG - chr4_1:1805402-1805421 Msa0528840:intron 40.0%
GGCATTTCAGATTTGTGACA+TGG - chr4_1:1805499-1805518 Msa0528840:CDS 40.0%
TACGTAGCTTAACCCAAAGT+TGG - chr4_1:1806108-1806127 Msa0528840:intron 40.0%
!! TGCTTTTTGGCACCAACTTT+GGG + chr4_1:1806123-1806142 None:intergenic 40.0%
TACTGAAAATAAGGGAAGGG+GGG + chr4_1:1806187-1806206 None:intergenic 40.0%
CTACTGAAAATAAGGGAAGG+GGG + chr4_1:1806188-1806207 None:intergenic 40.0%
ACCTTGTGTTTGGCAAAAAG+CGG + chr4_1:1806254-1806273 None:intergenic 40.0%
TTGGGAGACCATTATTTGCT+AGG + chr4_1:1806304-1806323 None:intergenic 40.0%
ACCCCTCAAATTGAGAATCT+GGG - chr4_1:1806374-1806393 Msa0528840:CDS 40.0%
TCAGATATGCATTCCCTTCA+TGG - chr4_1:1806770-1806789 Msa0528840:intron 40.0%
TTTCCTTCTCTCTCCATGAA+GGG + chr4_1:1806786-1806805 None:intergenic 40.0%
ATTTCCTTCTCTCTCCATGA+AGG + chr4_1:1806787-1806806 None:intergenic 40.0%
CAATGTAAATCTGTGTCTCC+CGG + chr4_1:1806894-1806913 None:intergenic 40.0%
ACACAGATTTACATTGCAGC+CGG - chr4_1:1806898-1806917 Msa0528840:intron 40.0%
TTCACCACCATAAATCTCAC+CGG + chr4_1:1806920-1806939 None:intergenic 40.0%
CACAAGCTAGAATCATTCAG+TGG + chr4_1:1807056-1807075 None:intergenic 40.0%
AGCACTTGGATTGAAAGTTG+TGG - chr4_1:1807122-1807141 Msa0528840:CDS 40.0%
!! GAAAGTTGTGGCTCTGAAAA+TGG - chr4_1:1807134-1807153 Msa0528840:intron 40.0%
GAACTGCTGTAACTCATCAA+GGG + chr4_1:1807265-1807284 None:intergenic 40.0%
CCCATCATAGGTAGGAATAA+AGG + chr4_1:1807346-1807365 None:intergenic 40.0%
! TTTTGCCATGTTCCCATCAT+AGG + chr4_1:1807358-1807377 None:intergenic 40.0%
AACATGGCAAAACTTGTGGA+AGG - chr4_1:1807366-1807385 Msa0528840:intron 40.0%
CGTGAGTAAATAGATACCTG+CGG + chr4_1:1807395-1807414 None:intergenic 40.0%
TATCTTATTAGCGCTCATGC+AGG - chr4_1:1807489-1807508 Msa0528840:intron 40.0%
! GCAATTGTACAAGCCTTTTC+CGG + chr4_1:1807547-1807566 None:intergenic 40.0%
ATCAAAATGGAACCCTTCCA+TGG - chr4_1:1807576-1807595 Msa0528840:intron 40.0%
CTACAAACTCATTCCATGGA+AGG + chr4_1:1807592-1807611 None:intergenic 40.0%
GCATCTACAAACTCATTCCA+TGG + chr4_1:1807596-1807615 None:intergenic 40.0%
ACAGGTTCACGAAAAGAGAA+TGG - chr4_1:1807622-1807641 Msa0528840:intron 40.0%
CAGGTTCACGAAAAGAGAAT+GGG - chr4_1:1807623-1807642 Msa0528840:intron 40.0%
CATTGTAGACAAACCAAAGG+AGG - chr4_1:1807667-1807686 Msa0528840:intron 40.0%
GCTCTTGCATACTTATGGTT+GGG + chr4_1:1807825-1807844 None:intergenic 40.0%
TGCTCTTGCATACTTATGGT+TGG + chr4_1:1807826-1807845 None:intergenic 40.0%
CATCTTTGCAAGCCTCTATA+TGG + chr4_1:1807953-1807972 None:intergenic 40.0%
! TTTTCCACTTTACAAGCTGC+AGG - chr4_1:1808164-1808183 Msa0528840:intron 40.0%
TGGGTTGTAATAATTGTGGC+CGG - chr4_1:1808194-1808213 Msa0528840:intron 40.0%
! CGATGATCAAGTTTTTGACC+CGG + chr4_1:1808216-1808235 None:intergenic 40.0%
TTGATCATCGTCCCCTTTAA+AGG - chr4_1:1808226-1808245 Msa0528840:intron 40.0%
ATCGCAAATGTAGCCTTCTA+CGG + chr4_1:1808278-1808297 None:intergenic 40.0%
! AGTATTTTGCAAGGTCTCCA+AGG - chr4_1:1808384-1808403 Msa0528840:intron 40.0%
TTATCAAGAAAGGAGGCTCA+AGG + chr4_1:1808441-1808460 None:intergenic 40.0%
AGAATTGGAACTAGACCAGT+TGG + chr4_1:1808468-1808487 None:intergenic 40.0%
GATCTTCGAGCAGAAAGAAT+TGG + chr4_1:1808483-1808502 None:intergenic 40.0%
AAGGGGAAAAAATGATCCTG+CGG + chr4_1:1808517-1808536 None:intergenic 40.0%
TAGCAGTCGGAATAAGAGAA+GGG + chr4_1:1808535-1808554 None:intergenic 40.0%
ATAGCAGTCGGAATAAGAGA+AGG + chr4_1:1808536-1808555 None:intergenic 40.0%
! TCTGAGATTAGTAGCACTAG+GGG + chr4_1:1808998-1809017 None:intergenic 40.0%
TGCTGTCTGAGAAAAACCAT+TGG - chr4_1:1809068-1809087 Msa0528840:five_prime_UTR 40.0%
GTCAAAAAAAGGGTCTGACT+CGG - chr4_1:1809113-1809132 Msa0528840:five_prime_UTR 40.0%
TATGCATACACCTTGACACT+GGG + chr4_1:1809144-1809163 None:intergenic 40.0%
ATATGCATACACCTTGACAC+TGG + chr4_1:1809145-1809164 None:intergenic 40.0%
CACATTCATAACTGTGCAGT+TGG + chr4_1:1809263-1809282 None:intergenic 40.0%
AAAGTTCTGCTGCAACTTTC+TGG - chr4_1:1809356-1809375 Msa0528840:five_prime_UTR 40.0%
!! CTTTCTGGCTCTGATACATT+TGG - chr4_1:1809371-1809390 Msa0528840:five_prime_UTR 40.0%
TTTCCTTGATATGGAAGAGC+TGG - chr4_1:1809414-1809433 Msa0528840:five_prime_UTR 40.0%
ATGATCATCTGTAGTCACTC+TGG - chr4_1:1809672-1809691 Msa0528840:five_prime_UTR 40.0%
AGGTGAGGATCCAATGAGAA+TGG + chr4_1:1803517-1803536 Msa0528830:intron 45.0%
AGGAATTGAGGAACAAGGTG+AGG + chr4_1:1803532-1803551 Msa0528830:intron 45.0%
AAGCTGCTCCTTTGATTCCA+AGG - chr4_1:1803971-1803990 Msa0528840:intron 45.0%
AAACGGCTCCTTGGAATCAA+AGG + chr4_1:1803982-1804001 Msa0528830:intron 45.0%
CAAACATGTCCACAGCACAA+TGG + chr4_1:1804034-1804053 Msa0528830:intron 45.0%
CATTGTGCTGTGGACATGTT+TGG - chr4_1:1804032-1804051 Msa0528840:intron 45.0%
!!! GCTTGAGTGGTTTTGTGATG+TGG - chr4_1:1804243-1804262 Msa0528840:three_prime_UTR 45.0%
GTACAGTGGAGAATCTGGAT+GGG + chr4_1:1804974-1804993 Msa0528830:three_prime_UTR 45.0%
TGTACAGTGGAGAATCTGGA+TGG + chr4_1:1804975-1804994 Msa0528830:three_prime_UTR 45.0%
GAGTTGTACAGTGGAGAATC+TGG + chr4_1:1804979-1804998 Msa0528830:three_prime_UTR 45.0%
CAGCTAAAGGAGTTGTACAG+TGG + chr4_1:1804988-1805007 Msa0528830:three_prime_UTR 45.0%
TTCTGCTGGAGAGATTGATG+GGG + chr4_1:1805117-1805136 Msa0528830:three_prime_UTR 45.0%
CTTTCTGCTGGAGAGATTGA+TGG + chr4_1:1805119-1805138 Msa0528830:three_prime_UTR 45.0%
! ACGTAGATGGGTTTGGTAGA+CGG - chr4_1:1805252-1805271 Msa0528840:CDS 45.0%
CTGCAAGATTTCAGCTGACA+CGG + chr4_1:1805336-1805355 None:intergenic 45.0%
!! TCTAAGAGTGTCCTGCAATG+GGG - chr4_1:1805378-1805397 Msa0528840:intron 45.0%
TTGATTCAAACCCCCATTGC+AGG + chr4_1:1805392-1805411 None:intergenic 45.0%
GTGACATGGTGACAATTGCT+CGG - chr4_1:1805513-1805532 Msa0528840:CDS 45.0%
! TCGGCTTTTGAACCTCACAT+TGG - chr4_1:1805532-1805551 Msa0528840:CDS 45.0%
! GAACCTCACATTGGTTGTTC+CGG - chr4_1:1805541-1805560 Msa0528840:CDS 45.0%
TCATTTGACCAGCTAACAGG+AGG + chr4_1:1805808-1805827 None:intergenic 45.0%
!! GTGCTTTTTGGCACCAACTT+TGG + chr4_1:1806124-1806143 None:intergenic 45.0%
TAAGGGAAGGGGGGAAATAT+AGG + chr4_1:1806178-1806197 None:intergenic 45.0%
!!! ACCGCTTTTTGCCAAACACA+AGG - chr4_1:1806250-1806269 Msa0528840:intron 45.0%
! GCTTTTTGCCAAACACAAGG+TGG - chr4_1:1806253-1806272 Msa0528840:intron 45.0%
GATGCACGCCTAGCAAATAA+TGG - chr4_1:1806293-1806312 Msa0528840:CDS 45.0%
! TAGGTGCCGTGTTAATTACC+AGG - chr4_1:1806340-1806359 Msa0528840:CDS 45.0%
CACCCCTCAAATTGAGAATC+TGG - chr4_1:1806373-1806392 Msa0528840:CDS 45.0%
CCCCAGATTCTCAATTTGAG+GGG + chr4_1:1806378-1806397 None:intergenic 45.0%
CCCCTCAAATTGAGAATCTG+GGG - chr4_1:1806375-1806394 Msa0528840:CDS 45.0%
GCCCCAGATTCTCAATTTGA+GGG + chr4_1:1806379-1806398 None:intergenic 45.0%
TGCCCCAGATTCTCAATTTG+AGG + chr4_1:1806380-1806399 None:intergenic 45.0%
TGATTCAGATACTTCGCGAG+AGG - chr4_1:1806405-1806424 Msa0528840:CDS 45.0%
GATTCAGATACTTCGCGAGA+GGG - chr4_1:1806406-1806425 Msa0528840:CDS 45.0%
ATTCAGATACTTCGCGAGAG+GGG - chr4_1:1806407-1806426 Msa0528840:CDS 45.0%
CTCAGATGCAATGCCACAAA+AGG + chr4_1:1806434-1806453 None:intergenic 45.0%
GAGATATGAGATGGACATGC+TGG - chr4_1:1806451-1806470 Msa0528840:CDS 45.0%
! GCTTTCTCAGGTTGTACTCT+TGG - chr4_1:1806473-1806492 Msa0528840:CDS 45.0%
TTGCACTAATGAAGAAGCCG+AGG - chr4_1:1806496-1806515 Msa0528840:CDS 45.0%
ATTCCCTTCATGGAGAGAGA+AGG - chr4_1:1806780-1806799 Msa0528840:intron 45.0%
TCTGAAGAAAGGAGATCCCA+GGG - chr4_1:1806811-1806830 Msa0528840:intron 45.0%
TGTCAAAGGACATAGACCCT+GGG + chr4_1:1806830-1806849 None:intergenic 45.0%
ACCTAAGGCTTGCATAACCA+AGG + chr4_1:1806866-1806885 None:intergenic 45.0%
!! TGCAAGCCTTAGGTTTTGAC+CGG - chr4_1:1806872-1806891 Msa0528840:intron 45.0%
ATTGCAGCCGGTGAGATTTA+TGG - chr4_1:1806910-1806929 Msa0528840:intron 45.0%
AAGGGGGAGGGAGATATAAA+TGG + chr4_1:1806991-1807010 None:intergenic 45.0%
!! GTTGTGGCTCTGAAAATGGT+TGG - chr4_1:1807138-1807157 Msa0528840:intron 45.0%
GGAACTGCTGTAACTCATCA+AGG + chr4_1:1807266-1807285 None:intergenic 45.0%
TTCATCACAGATGGCTGCTT+TGG - chr4_1:1807293-1807312 Msa0528840:CDS 45.0%
! GATGGCTGCTTTGGATTTCA+TGG - chr4_1:1807302-1807321 Msa0528840:intron 45.0%
GATTTCATGGTTTCGGTAGC+CGG - chr4_1:1807315-1807334 Msa0528840:intron 45.0%
!! GGTAGGAATAAAGGTGTCAC+CGG + chr4_1:1807337-1807356 None:intergenic 45.0%
! TCCTACCTATGATGGGAACA+TGG - chr4_1:1807350-1807369 Msa0528840:intron 45.0%
TGGGAACATGGCAAAACTTG+TGG - chr4_1:1807362-1807381 Msa0528840:intron 45.0%
GAGTAAATAGATACCTGCGG+TGG + chr4_1:1807392-1807411 None:intergenic 45.0%
! CCTTTTCCGGTCCAATAAGA+TGG + chr4_1:1807534-1807553 None:intergenic 45.0%
CCATCTTATTGGACCGGAAA+AGG - chr4_1:1807531-1807550 Msa0528840:intron 45.0%
TGTAGACAAACCAAAGGAGG+AGG - chr4_1:1807670-1807689 Msa0528840:intron 45.0%
CACACTTTGTTCCCTCACAA+AGG + chr4_1:1807724-1807743 None:intergenic 45.0%
! CTCTAAGAACTTATGCCCGA+GGG + chr4_1:1807867-1807886 None:intergenic 45.0%
! TCTCTAAGAACTTATGCCCG+AGG + chr4_1:1807868-1807887 None:intergenic 45.0%
TACAAGCTGCAGGCATGTAA+TGG - chr4_1:1808174-1808193 Msa0528840:intron 45.0%
ACAAGCTGCAGGCATGTAAT+GGG - chr4_1:1808175-1808194 Msa0528840:intron 45.0%
GGGTTGTAATAATTGTGGCC+GGG - chr4_1:1808195-1808214 Msa0528840:intron 45.0%
CTCAAGGATCTTGGACTTTG+CGG + chr4_1:1808425-1808444 None:intergenic 45.0%
AGATCTCATCAATTTGCCGC+AGG - chr4_1:1808498-1808517 Msa0528840:intron 45.0%
AGCAGTCGGAATAAGAGAAG+GGG + chr4_1:1808534-1808553 None:intergenic 45.0%
TCAAGGCTTGCAATAGCAGT+CGG + chr4_1:1808548-1808567 None:intergenic 45.0%
CATTCAGGGTTCCAACATGA+TGG + chr4_1:1808807-1808826 None:intergenic 45.0%
TGGTTGTGTGATAACCAGCA+AGG - chr4_1:1808848-1808867 Msa0528840:CDS 45.0%
GGTTGTGTGATAACCAGCAA+GGG - chr4_1:1808849-1808868 Msa0528840:CDS 45.0%
TGAGGAGCTAGTATGCAAAG+CGG + chr4_1:1808896-1808915 None:intergenic 45.0%
TCCTCATTATCACGGCTCAT+GGG - chr4_1:1808910-1808929 Msa0528840:exon 45.0%
ACTGTTCAGAGACTCCATCT+GGG + chr4_1:1808950-1808969 None:intergenic 45.0%
!! GGGTACCGATGCTTTCTTAT+TGG + chr4_1:1808977-1808996 None:intergenic 45.0%
CTGAGATTAGTAGCACTAGG+GGG + chr4_1:1808997-1809016 None:intergenic 45.0%
!! AGATATGGAAGCATCCCTTC+TGG - chr4_1:1809015-1809034 Msa0528840:intron 45.0%
ATGCATACACCTTGACACTG+GGG + chr4_1:1809143-1809162 None:intergenic 45.0%
GCAATCCAAGCTGTATTCTG+AGG + chr4_1:1809336-1809355 None:intergenic 45.0%
TAGCCAGCTCTTCCATATCA+AGG + chr4_1:1809420-1809439 None:intergenic 45.0%
ATACATCCATGTCCATCCGA+GGG + chr4_1:1809492-1809511 None:intergenic 45.0%
AATACATCCATGTCCATCCG+AGG + chr4_1:1809493-1809512 None:intergenic 45.0%
TTCTCCTGCCTTGACAGAAA+GGG - chr4_1:1809585-1809604 Msa0528840:five_prime_UTR 45.0%
GGGATTACCTATTTGCCCTA+AGG + chr4_1:1809615-1809634 None:intergenic 45.0%
!!! ACCAGCTGGTCTTTTCTCTT+GGG + chr4_1:1809635-1809654 None:intergenic 45.0%
TATGAAGTCAAAGGACCAGC+TGG + chr4_1:1809649-1809668 None:intergenic 45.0%
!!! AGAATTTTTTTTTTTTTTTT+TGG - chr4_1:1804609-1804628 Msa0528840:three_prime_UTR 5.0%
CAAACACGAAAACGGCTCCT+TGG + chr4_1:1803991-1804010 Msa0528830:intron 50.0%
!! CAAGGAGCCGTTTTCGTGTT+TGG - chr4_1:1803989-1804008 Msa0528840:intron 50.0%
CTTGCAGGAAGTAGAATGGG+AGG + chr4_1:1804174-1804193 Msa0528830:intron 50.0%
! CGTAGATGGGTTTGGTAGAC+GGG - chr4_1:1805253-1805272 Msa0528840:CDS 50.0%
! GTAGATGGGTTTGGTAGACG+GGG - chr4_1:1805254-1805273 Msa0528840:CDS 50.0%
CGTGTCAGCTGAAATCTTGC+AGG - chr4_1:1805334-1805353 Msa0528840:intron 50.0%
!! CTAAGAGTGTCCTGCAATGG+GGG - chr4_1:1805379-1805398 Msa0528840:intron 50.0%
GTTCCGGAACAACCAATGTG+AGG + chr4_1:1805547-1805566 None:intergenic 50.0%
! AATCCTTTTGGGCAGACCGT+AGG - chr4_1:1805576-1805595 Msa0528840:intron 50.0%
ATACCTACGGTCTGCCCAAA+AGG + chr4_1:1805582-1805601 None:intergenic 50.0%
TTATTCTGGCAGTGGCTTCG+AGG - chr4_1:1805672-1805691 Msa0528840:intron 50.0%
GAAAAGTGGATACTCGACCC+TGG - chr4_1:1805777-1805796 Msa0528840:intron 50.0%
GAAGTGCACCACCTTGTGTT+TGG + chr4_1:1806264-1806283 None:intergenic 50.0%
GAGGGGTGAATTTAAGTGCC+TGG + chr4_1:1806361-1806380 None:intergenic 50.0%
!! ATGGACATGCTGGCTTTCTC+AGG - chr4_1:1806461-1806480 Msa0528840:CDS 50.0%
AAGAAGCCGAGGATCTCAAG+CGG - chr4_1:1806507-1806526 Msa0528840:CDS 50.0%
GTCTGAAGAAAGGAGATCCC+AGG - chr4_1:1806810-1806829 Msa0528840:intron 50.0%
GTGTCAAAGGACATAGACCC+TGG + chr4_1:1806831-1806850 None:intergenic 50.0%
GGGTCTATGTCCTTTGACAC+CGG - chr4_1:1806831-1806850 Msa0528840:intron 50.0%
TCTATGTCCTTTGACACCGG+AGG - chr4_1:1806834-1806853 Msa0528840:intron 50.0%
ATAACCAAGGCAGTCTCCTC+CGG + chr4_1:1806853-1806872 None:intergenic 50.0%
GCCTTGGTTATGCAAGCCTT+AGG - chr4_1:1806862-1806881 Msa0528840:intron 50.0%
!! GCAAGCCTTAGGTTTTGACC+GGG - chr4_1:1806873-1806892 Msa0528840:intron 50.0%
TGTCTCCCGGTCAAAACCTA+AGG + chr4_1:1806881-1806900 None:intergenic 50.0%
GCCATGTTCCCATCATAGGT+AGG + chr4_1:1807354-1807373 None:intergenic 50.0%
TAGCGCTCATGCAGGTATTC+CGG - chr4_1:1807497-1807516 Msa0528840:intron 50.0%
GTTTGTAGATGCTGTGCGAC+AGG - chr4_1:1807604-1807623 Msa0528840:intron 50.0%
!! ACAAAGGCACTCATGAGGGT+TGG + chr4_1:1807708-1807727 None:intergenic 50.0%
!! CCTCACAAAGGCACTCATGA+GGG + chr4_1:1807712-1807731 None:intergenic 50.0%
CCTCATGAGTGCCTTTGTGA+GGG - chr4_1:1807710-1807729 Msa0528840:intron 50.0%
CTGAAAATGGCTCCTTCCCT+CGG - chr4_1:1807848-1807867 Msa0528840:intron 50.0%
TGAAAATGGCTCCTTCCCTC+GGG - chr4_1:1807849-1807868 Msa0528840:intron 50.0%
AAGAACTTATGCCCGAGGGA+AGG + chr4_1:1807863-1807882 None:intergenic 50.0%
CATGCCTGCAGCTTGTAAAG+TGG + chr4_1:1808171-1808190 None:intergenic 50.0%
TCACATGCGTTCACCGTAGA+AGG - chr4_1:1808262-1808281 Msa0528840:intron 50.0%
! GGTGAAAGTGGTGATGTCCT+TGG + chr4_1:1808404-1808423 None:intergenic 50.0%
CTTGGACTTTGCGGTGAAAG+TGG + chr4_1:1808416-1808435 None:intergenic 50.0%
GAAAGGAGGCTCAAGGATCT+TGG + chr4_1:1808434-1808453 None:intergenic 50.0%
TGTGTGATAACCAGCAAGGG+CGG - chr4_1:1808852-1808871 Msa0528840:CDS 50.0%
CTCCTCATTATCACGGCTCA+TGG - chr4_1:1808909-1808928 Msa0528840:exon 50.0%
CTGTTCAGAGACTCCATCTG+GGG + chr4_1:1808949-1808968 None:intergenic 50.0%
CACTGTTCAGAGACTCCATC+TGG + chr4_1:1808951-1808970 None:intergenic 50.0%
! GAAGCATCCCTTCTGGAAGA+GGG - chr4_1:1809022-1809041 Msa0528840:intron 50.0%
ATAACCGCCCTCTTCCAGAA+GGG + chr4_1:1809032-1809051 None:intergenic 50.0%
TATAACCGCCCTCTTCCAGA+AGG + chr4_1:1809033-1809052 None:intergenic 50.0%
GTAGACGTTGCTGAGACCAA+TGG + chr4_1:1809087-1809106 None:intergenic 50.0%
! AAGCAATGCAGAGTTGGCTC+TGG + chr4_1:1809199-1809218 None:intergenic 50.0%
TTGCGCCTCAGAATACAGCT+TGG - chr4_1:1809328-1809347 Msa0528840:five_prime_UTR 50.0%
TACATCCATGTCCATCCGAG+GGG + chr4_1:1809491-1809510 None:intergenic 50.0%
TTCTGTCAAGGCAGGAGAAC+AGG + chr4_1:1809584-1809603 None:intergenic 50.0%
GTTCTCCTGCCTTGACAGAA+AGG - chr4_1:1809584-1809603 Msa0528840:five_prime_UTR 50.0%
TCTCCTGCCTTGACAGAAAG+GGG - chr4_1:1809586-1809605 Msa0528840:five_prime_UTR 50.0%
TCCCAAGAGAAAAGACCAGC+TGG - chr4_1:1809631-1809650 Msa0528840:five_prime_UTR 50.0%
!!! GACCAGCTGGTCTTTTCTCT+TGG + chr4_1:1809636-1809655 None:intergenic 50.0%
GAAGCTGGTGAATGAGGGTG+AGG + chr4_1:1803663-1803682 Msa0528830:CDS 55.0%
ACAACTCAACGGCCTCCTCA+AGG - chr4_1:1804126-1804145 Msa0528840:intron 55.0%
!! GCTAACAGGAGGCATCTCCA+GGG + chr4_1:1805797-1805816 None:intergenic 55.0%
!! AGCTAACAGGAGGCATCTCC+AGG + chr4_1:1805798-1805817 None:intergenic 55.0%
TGGAGATGCCTCCTGTTAGC+TGG - chr4_1:1805797-1805816 Msa0528840:intron 55.0%
CCTCATCCGCTTGAGATCCT+CGG + chr4_1:1806516-1806535 None:intergenic 55.0%
GCAGCCGGTGAGATTTATGG+TGG - chr4_1:1806913-1806932 Msa0528840:intron 55.0%
CCCTCATGAGTGCCTTTGTG+AGG - chr4_1:1807709-1807728 Msa0528840:intron 55.0%
!! CCCTCACAAAGGCACTCATG+AGG + chr4_1:1807713-1807732 None:intergenic 55.0%
GCAGGATCGCAAGCTGAAAG+AGG + chr4_1:1808582-1808601 None:intergenic 55.0%
! GCCCATGAGCCGTGATAATG+AGG + chr4_1:1808914-1808933 None:intergenic 55.0%
CACCTCAAGATGACCCCAGA+TGG - chr4_1:1808933-1808952 Msa0528840:five_prime_UTR 55.0%
! CTCCATCTGGGGTCATCTTG+AGG + chr4_1:1808938-1808957 None:intergenic 55.0%
!! GGAAGCATCCCTTCTGGAAG+AGG - chr4_1:1809021-1809040 Msa0528840:intron 55.0%
CTCGGATATCCCCAGTGTCA+AGG - chr4_1:1809131-1809150 Msa0528840:five_prime_UTR 55.0%
!! GCAGAGTTGGCTCTGGACTA+TGG + chr4_1:1809192-1809211 None:intergenic 55.0%
TCCTACCGTCGAAAACCCCT+CGG - chr4_1:1809473-1809492 Msa0528840:five_prime_UTR 55.0%
! TCCATCCGAGGGGTTTTCGA+CGG + chr4_1:1809481-1809500 None:intergenic 55.0%
GAAAACCCCTCGGATGGACA+TGG - chr4_1:1809483-1809502 Msa0528840:five_prime_UTR 55.0%
CTCCTGCCTTGACAGAAAGG+GGG - chr4_1:1809587-1809606 Msa0528840:five_prime_UTR 55.0%
AAGGAGCCCCCTTTCTGTCA+AGG + chr4_1:1809596-1809615 None:intergenic 55.0%
TGACAGAAAGGGGGCTCCTT+AGG - chr4_1:1809596-1809615 Msa0528840:five_prime_UTR 55.0%
GACAGAAAGGGGGCTCCTTA+GGG - chr4_1:1809597-1809616 Msa0528840:five_prime_UTR 55.0%
CTGTAGTCACTCTGGCACTG+TGG - chr4_1:1809680-1809699 Msa0528840:five_prime_UTR 55.0%
! TCGCGAGAGGGGACCTTTTG+TGG - chr4_1:1806418-1806437 Msa0528840:CDS 60.0%
CCGAGGATCTCAAGCGGATG+AGG - chr4_1:1806513-1806532 Msa0528840:CDS 60.0%
! GCAGTCTCCTCCGGTGTCAA+AGG + chr4_1:1806844-1806863 None:intergenic 60.0%
AACTTGTGGAAGGCCACCGC+AGG - chr4_1:1807376-1807395 Msa0528840:intron 60.0%
! ACCAGCAAGGGCGGATTTGC+AGG - chr4_1:1808861-1808880 Msa0528840:CDS 60.0%
! GCATCCCTTCTGGAAGAGGG+CGG - chr4_1:1809025-1809044 Msa0528840:intron 60.0%
! TCCGAGGGGTTTTCGACGGT+AGG + chr4_1:1809477-1809496 None:intergenic 60.0%
ACCGTCGAAAACCCCTCGGA+TGG - chr4_1:1809477-1809496 Msa0528840:five_prime_UTR 60.0%
AGCCCCCTTTCTGTCAAGGC+AGG + chr4_1:1809592-1809611 None:intergenic 60.0%
GGGGGCTCCTTAGGGCAAAT+AGG - chr4_1:1809605-1809624 Msa0528840:five_prime_UTR 60.0%
GACACCGGAGGAGACTGCCT+TGG - chr4_1:1806846-1806865 Msa0528840:intron 65.0%
GCCTGCAAATCCGCCCTTGC+TGG + chr4_1:1808865-1808884 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 1803119 1809708 1803119 ID=Msa0528840;Name=Msa0528840
chr4_1 mRNA 1803119 1809708 1803119 ID=Msa0528840-mRNA-1;Parent=Msa0528840;Name=Msa0528840-mRNA-1;_AED=0.12;_eAED=0.12;_QI=717|1|1|1|0.7|0.54|11|1553|507
chr4_1 exon 1803119 1803245 1803119 ID=Msa0528840-mRNA-1:exon:580;Parent=Msa0528840-mRNA-1
chr4_1 exon 1803375 1803984 1803375 ID=Msa0528840-mRNA-1:exon:579;Parent=Msa0528840-mRNA-1
chr4_1 exon 1804227 1805316 1804227 ID=Msa0528840-mRNA-1:exon:578;Parent=Msa0528840-mRNA-1
chr4_1 exon 1805430 1805587 1805430 ID=Msa0528840-mRNA-1:exon:577;Parent=Msa0528840-mRNA-1
chr4_1 exon 1805849 1806053 1805849 ID=Msa0528840-mRNA-1:exon:576;Parent=Msa0528840-mRNA-1
chr4_1 exon 1806293 1806582 1806293 ID=Msa0528840-mRNA-1:exon:575;Parent=Msa0528840-mRNA-1
chr4_1 exon 1806981 1807143 1806981 ID=Msa0528840-mRNA-1:exon:574;Parent=Msa0528840-mRNA-1
chr4_1 exon 1807230 1807318 1807230 ID=Msa0528840-mRNA-1:exon:573;Parent=Msa0528840-mRNA-1
chr4_1 exon 1807404 1807471 1807404 ID=Msa0528840-mRNA-1:exon:572;Parent=Msa0528840-mRNA-1
chr4_1 exon 1808635 1808987 1808635 ID=Msa0528840-mRNA-1:exon:571;Parent=Msa0528840-mRNA-1
chr4_1 exon 1809068 1809708 1809068 ID=Msa0528840-mRNA-1:exon:570;Parent=Msa0528840-mRNA-1
chr4_1 five_prime_UTR 1809068 1809708 1809068 ID=Msa0528840-mRNA-1:five_prime_utr;Parent=Msa0528840-mRNA-1
chr4_1 five_prime_UTR 1808912 1808987 1808912 ID=Msa0528840-mRNA-1:five_prime_utr;Parent=Msa0528840-mRNA-1
chr4_1 CDS 1808635 1808911 1808635 ID=Msa0528840-mRNA-1:cds;Parent=Msa0528840-mRNA-1
chr4_1 CDS 1807404 1807471 1807404 ID=Msa0528840-mRNA-1:cds;Parent=Msa0528840-mRNA-1
chr4_1 CDS 1807230 1807318 1807230 ID=Msa0528840-mRNA-1:cds;Parent=Msa0528840-mRNA-1
chr4_1 CDS 1806981 1807143 1806981 ID=Msa0528840-mRNA-1:cds;Parent=Msa0528840-mRNA-1
chr4_1 CDS 1806293 1806582 1806293 ID=Msa0528840-mRNA-1:cds;Parent=Msa0528840-mRNA-1
chr4_1 CDS 1805849 1806053 1805849 ID=Msa0528840-mRNA-1:cds;Parent=Msa0528840-mRNA-1
chr4_1 CDS 1805430 1805587 1805430 ID=Msa0528840-mRNA-1:cds;Parent=Msa0528840-mRNA-1
chr4_1 CDS 1805043 1805316 1805043 ID=Msa0528840-mRNA-1:cds;Parent=Msa0528840-mRNA-1
chr4_1 three_prime_UTR 1804227 1805042 1804227 ID=Msa0528840-mRNA-1:three_prime_utr;Parent=Msa0528840-mRNA-1
chr4_1 three_prime_UTR 1803375 1803984 1803375 ID=Msa0528840-mRNA-1:three_prime_utr;Parent=Msa0528840-mRNA-1
chr4_1 three_prime_UTR 1803119 1803245 1803119 ID=Msa0528840-mRNA-1:three_prime_utr;Parent=Msa0528840-mRNA-1
Gene Sequence

>Msa0528840

ATGGAAGTTAGATCATCAGAGGGTAATCAAGTGAGATATTATGATAAGCTTCTTCAAGCTGCTCCTTTGATTCCAAGGAGCCGTTTTCGTGTTTGGTTTATTCGAATTTGTTCAACCATTGTGCTGTGGACATGTTTGGTTCAGCTTGTGACTGTGAGTGAACTATGGCATTCCAATTTCTTTACTGGATTTACTAGTCGTATATATCACACAACTCAACGGCCTCCTCAAGGAGATGTTATATTTGCTCAATCTCCTCCCATTCTACTTCCTGCAAGAAATTATACTAGTAATGGTTTTCTAAGAGTGTCCTGCAATGGGGGTTTGAATCAAATGCGTGCAGCGATTTGTGACATGGTGACAATTGCTCGGCTTTTGAACCTCACATTGGTTGTTCCGGAACTTGATAAGAAATCCTTTTGGGCAGACCGTAGTGGCTTCGAGGATATATTTGATGTAAGACATTTCATTGATTCTTTACGAGATGAAGTTCGAATAGTGAAAAGAGTTCCCAAAAAGTTTACTAGGAAAAGTGGATACTCGACCCTGGAGATGCCTCCTGTTAGCTGGTCAAATGAAAAGTATTACTTGGAGCAGATTCTACCGCTTTTTGCCAAACACAAGGTGGTGCACTTCAACAAAACAGATGCACGCCTAGCAAATAATGGTCTCCCAATTGATCTACAGAAACTTAGGTGCCGTGTTAATTACCAGGCACTTAAATTCACCCCTCAAATTGAGAATCTGGGGCAAAAATTGATTCAGATACTTCGCGAGAGGGGACCTTTTGTGGCATTGCATCTGAGATATGAGATGGACATGCTGGCTTTCTCAGGTTGTACTCTTGGTTGCACTAATGAAGAAGCCGAGGATCTCAAGCGGATGAGATATGCATTCCCTTCATGGAGAGAGAAGGAAATAGTGTCTGAAGAAAGGAGATCCCAGGGTCTATGTCCTTTGACACCGGAGGAGACTGCCTTGGTTATGCAAGCCTTAGGTTTTGACCGGGAGACACAGATTTACATTGCAGCCGGTGAGATTTATGGTGGTGAACGTAGACTTGCGCAACTGAGAGCTGCATTTCCAAAAATTGTTAAAAAAGAGGTATTGGTCGCCCTTGATGAGTTACAGCAGTTCCAAAATCATTCATCACAGATGGCTGCTTTGGATTTCATGGTTTCGGTAGCCGGTGACACCTTTATTCCTACCTATGATGGGAACATGGCAAAACTTGTGGAAGGCCACCGCAGGTATTCCGGTTTTAAAAAGTCCATCTTATTGGACCGGAAAAGGCTTGTACAATTGCTTGATATGCATCAAAATGGAACCCTTCCATGGAATGAGTTTGTAGATGCTGTGCGACAGGTTCACGAAAAGAGAATGGGTCAGCCGACTTATCGTCGAATCATTGTAGACAAACCAAAGGAGGAGGATTATTTCTACGCCAACCCTCATGAGTGCCTTTGTGAGGGAACAAAGTGTGATGATTTGCTAGGTCCTCATAACTCTACTCAAGTAAGATGA
Protein sequence

>Msa0528840

MEVRSSEGNQVRYYDKLLQAAPLIPRSRFRVWFIRICSTIVLWTCLVQLVTVSELWHSNFFTGFTSRIYHTTQRPPQGDVIFAQSPPILLPARNYTSNGFLRVSCNGGLNQMRAAICDMVTIARLLNLTLVVPELDKKSFWADRSGFEDIFDVRHFIDSLRDEVRIVKRVPKKFTRKSGYSTLEMPPVSWSNEKYYLEQILPLFAKHKVVHFNKTDARLANNGLPIDLQKLRCRVNYQALKFTPQIENLGQKLIQILRERGPFVALHLRYEMDMLAFSGCTLGCTNEEAEDLKRMRYAFPSWREKEIVSEERRSQGLCPLTPEETALVMQALGFDRETQIYIAAGEIYGGERRLAQLRAAFPKIVKKEVLVALDELQQFQNHSSQMAALDFMVSVAGDTFIPTYDGNMAKLVEGHRRYSGFKKSILLDRKRLVQLLDMHQNGTLPWNEFVDAVRQVHEKRMGQPTYRRIIVDKPKEEDYFYANPHECLCEGTKCDDLLGPHNSTQVR*