Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530230 | XP_024629295.1 | 35.652 | 115 | 65 | 2 | 60 | 173 | 63 | 169 | 1.56e-11 | 74.7 |
| Msa0530230 | XP_024629295.1 | 40.976 | 205 | 99 | 7 | 188 | 386 | 3 | 191 | 1.59e-34 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530230 | sp|Q9C5M0|DTC_ARATH | 33.058 | 121 | 70 | 3 | 55 | 168 | 164 | 280 | 4.59e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530230 | G7LIP7 | 35.652 | 115 | 65 | 2 | 60 | 173 | 49 | 155 | 8.88e-12 | 74.3 |
| Msa0530230 | G7LIP7 | 41.451 | 193 | 91 | 7 | 200 | 386 | 1 | 177 | 5.23e-32 | 129 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0530230 | Msa0665020 | 0.937659 | 2.416939e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530230 | MtrunA17_Chr8g0378951 | 38.281 | 128 | 67 | 4 | 48 | 168 | 161 | 283 | 1.42e-16 | 79.7 |
| Msa0530230 | MtrunA17_Chr8g0378951 | 32.479 | 117 | 72 | 3 | 254 | 366 | 176 | 289 | 7.86e-13 | 68.6 |
| Msa0530230 | MtrunA17_Chr8g0379131 | 36.232 | 69 | 44 | 0 | 97 | 165 | 28 | 96 | 1.40e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530230 | AT5G19760.1 | 33.058 | 121 | 70 | 3 | 55 | 168 | 164 | 280 | 4.66e-13 | 69.7 |
Find 102 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCTCAATTTCACAAATT+AGG | 0.126612 | 4_1:-4282902 | None:intergenic |
| TAACCTGTTCCAAAGCTTTC+TGG | 0.148273 | 4_1:-4281814 | None:intergenic |
| AACATTGTGTTTCATACTTC+TGG | 0.222050 | 4_1:+4279866 | Msa0530230:CDS |
| TTCTCCACCGTCACAGTTTC+CGG | 0.222445 | 4_1:-4278788 | None:intergenic |
| TTCTCGACTCTGACTGTTCT+AGG | 0.222802 | 4_1:+4282400 | Msa0530230:CDS |
| AGCCGTCCTTGCCAAGAATT+TGG | 0.225779 | 4_1:+4281389 | Msa0530230:CDS |
| AAATGCTCCATCTCTAATAT+TGG | 0.235825 | 4_1:+4281228 | Msa0530230:CDS |
| ATGCTCAATTTCACAAATTA+GGG | 0.250812 | 4_1:-4282901 | None:intergenic |
| AGTTACTGTATCCTTGTTCT+TGG | 0.263863 | 4_1:+4282068 | Msa0530230:CDS |
| GACAGCTTGCTCCAAATTCT+TGG | 0.267851 | 4_1:-4281400 | None:intergenic |
| AACCAATGGCCAATCAAATA+TGG | 0.291527 | 4_1:+4282750 | Msa0530230:three_prime_UTR |
| ACGTTTGGCTCTGTTGTATC+AGG | 0.311812 | 4_1:+4281443 | Msa0530230:CDS |
| TTAGGCATGTGTCCTTTCTA+TGG | 0.327558 | 4_1:+4281664 | Msa0530230:CDS |
| GGCTAATCCACCTTCATAAT+AGG | 0.328189 | 4_1:-4282205 | None:intergenic |
| TGCGTTTAAGAATTTACGTT+TGG | 0.349802 | 4_1:+4281428 | Msa0530230:CDS |
| CCCAAACATGCTACAAAATT+CGG | 0.350075 | 4_1:-4282685 | None:intergenic |
| TTCACAAATTAGGGTGGAAA+TGG | 0.356748 | 4_1:-4282892 | None:intergenic |
| AATGCTCCATCTCTAATATT+GGG | 0.357026 | 4_1:+4281229 | Msa0530230:CDS |
| TCAGACTTGCCAGAAAGCTT+TGG | 0.357142 | 4_1:+4281805 | Msa0530230:CDS |
| AACTCGCCTAATAAATCAAT+GGG | 0.364562 | 4_1:-4282868 | None:intergenic |
| TTTGGAGTTGATCGTGAAAC+TGG | 0.383317 | 4_1:+4280066 | Msa0530230:CDS |
| TGACAAAATCCATATTTGAT+TGG | 0.389785 | 4_1:-4282759 | None:intergenic |
| AATAGTAAGAGTCGTGATAT+TGG | 0.390091 | 4_1:+4280119 | Msa0530230:CDS |
| GTGAAACTGGTCTCTGGCTG+TGG | 0.393696 | 4_1:+4280079 | Msa0530230:CDS |
| AAAATCTTGAAGCAGTGGTT+TGG | 0.408238 | 4_1:-4281064 | None:intergenic |
| CATGCAGTTTCTACCATGCT+TGG | 0.418031 | 4_1:+4281630 | Msa0530230:intron |
| TGATTCCACAGTAGGATAAT+CGG | 0.423933 | 4_1:-4281865 | None:intergenic |
| TGCTACAAAATTCGGAGTAT+TGG | 0.426146 | 4_1:-4282677 | None:intergenic |
| CTTCAAGGCAACTGTCGGTC+TGG | 0.432958 | 4_1:+4280170 | Msa0530230:CDS |
| CTGCGAATGAAAGGACAAAC+TGG | 0.443436 | 4_1:-4282559 | None:intergenic |
| AAATTCTTGGCAAGGACGGC+TGG | 0.452228 | 4_1:-4281387 | None:intergenic |
| TAACATTTGTTTCAGCATCT+GGG | 0.457232 | 4_1:+4281778 | Msa0530230:intron |
| TTGCCAGAAAGCTTTGGAAC+AGG | 0.457695 | 4_1:+4281811 | Msa0530230:CDS |
| TGGGATGCTTCATATCTTCA+AGG | 0.458802 | 4_1:+4280155 | Msa0530230:CDS |
| CTTGGAAATCGTGCTTACTC+TGG | 0.461557 | 4_1:+4280977 | Msa0530230:CDS |
| TTACTATTGCAAGAGCACTA+TGG | 0.463813 | 4_1:-4280104 | None:intergenic |
| CATGATTTCTGCTTATCTTG+TGG | 0.463918 | 4_1:+4282260 | Msa0530230:CDS |
| ACATATAAAATGTCATTCAA+AGG | 0.464559 | 4_1:-4282961 | None:intergenic |
| AGGACACAACTTTATGCCCT+TGG | 0.466171 | 4_1:+4280959 | Msa0530230:CDS |
| CATATAAAATGTCATTCAAA+GGG | 0.469963 | 4_1:-4282960 | None:intergenic |
| ATTGTTACAACCTATTATGA+AGG | 0.471594 | 4_1:+4282195 | Msa0530230:CDS |
| ACTCACATGAACATTCTGAT+TGG | 0.472663 | 4_1:-4281691 | None:intergenic |
| ATCCATATTTGATTGGCCAT+TGG | 0.476609 | 4_1:-4282752 | None:intergenic |
| AGTGACATGAATGTTATTGT+TGG | 0.478697 | 4_1:+4281917 | Msa0530230:CDS |
| CAACTCGCCTAATAAATCAA+TGG | 0.482645 | 4_1:-4282869 | None:intergenic |
| CAAATTTCAAAACCAACCAT+TGG | 0.483965 | 4_1:-4282718 | None:intergenic |
| GCTCATATTAGAAAATTGTT+CGG | 0.485601 | 4_1:+4282598 | Msa0530230:three_prime_UTR |
| CACAAGATAAGCAGAAATCA+TGG | 0.485648 | 4_1:-4282259 | None:intergenic |
| CCGTCACAGTTTCCGGAGAA+GGG | 0.487690 | 4_1:-4278781 | None:intergenic |
| ACCGTCACAGTTTCCGGAGA+AGG | 0.488765 | 4_1:-4278782 | None:intergenic |
| TTGATCGTGAAACTGGTCTC+TGG | 0.496563 | 4_1:+4280073 | Msa0530230:CDS |
| TGCTTGGCATTAATACTCTT+AGG | 0.497321 | 4_1:+4281646 | Msa0530230:CDS |
| TTCTCCGGAAACTGTGACGG+TGG | 0.498806 | 4_1:+4278784 | Msa0530230:CDS |
| AGTTTGTAAGAATTCAAAGA+TGG | 0.503704 | 4_1:+4282115 | Msa0530230:CDS |
| ACGCTAGAACAACGATCAAA+AGG | 0.504102 | 4_1:-4279893 | None:intergenic |
| CTGATTGGGCCGCCATAGAA+AGG | 0.505868 | 4_1:-4281676 | None:intergenic |
| TATTTCATGAAGCATACTCT+TGG | 0.510789 | 4_1:+4281890 | Msa0530230:CDS |
| TGTTATCATAACCGTGATGA+AGG | 0.511198 | 4_1:+4282524 | Msa0530230:CDS |
| CTCACATGAACATTCTGATT+GGG | 0.513991 | 4_1:-4281690 | None:intergenic |
| TTGAAATCCAGTATAAAAGT+TGG | 0.517584 | 4_1:-4282226 | None:intergenic |
| CTCCAAATTCTTGGCAAGGA+CGG | 0.521022 | 4_1:-4281391 | None:intergenic |
| CTCAATTTCACAAATTAGGG+TGG | 0.521867 | 4_1:-4282898 | None:intergenic |
| GGAAACTGTGACGGTGGAGA+AGG | 0.522067 | 4_1:+4278790 | Msa0530230:CDS |
| AAGCAGAAATCATGGAAGAA+TGG | 0.522671 | 4_1:-4282251 | None:intergenic |
| GAAATATATGATTCCACAGT+AGG | 0.525372 | 4_1:-4281873 | None:intergenic |
| TAGACGTTGACAATTGTCAT+TGG | 0.526996 | 4_1:+4281201 | Msa0530230:intron |
| GAGAATCGTCGTCCGTACAA+TGG | 0.528329 | 4_1:+4282159 | Msa0530230:CDS |
| ACGTTGACAATTGTCATTGG+TGG | 0.528965 | 4_1:+4281204 | Msa0530230:CDS |
| AACAAACCCAATATTAGAGA+TGG | 0.530295 | 4_1:-4281235 | None:intergenic |
| AAACTATAACTGCGAATGAA+AGG | 0.531758 | 4_1:-4282568 | None:intergenic |
| ATTTGTAGTTTGGAAACCAA+TGG | 0.532109 | 4_1:+4282736 | Msa0530230:three_prime_UTR |
| TGAATTCTTACAAACTCAAG+TGG | 0.534594 | 4_1:-4282108 | None:intergenic |
| CGGTGGAGAAGGGTTGAGAG+AGG | 0.535986 | 4_1:+4278801 | Msa0530230:CDS |
| ATGATTACAAAACAAGAGAA+AGG | 0.537076 | 4_1:-4283097 | None:intergenic |
| TATCTTTGTCATACTAAGAG+TGG | 0.540067 | 4_1:+4281835 | Msa0530230:CDS |
| AAGGCAACTGTCGGTCTGGA+AGG | 0.540881 | 4_1:+4280174 | Msa0530230:CDS |
| ATGTGCTTGTTAAACTTCGA+AGG | 0.549433 | 4_1:+4280939 | Msa0530230:CDS |
| CTAAGAACATTCAGTGAAGG+TGG | 0.550321 | 4_1:+4281016 | Msa0530230:CDS |
| GACAAGAGTTAAAATGCTCC+AGG | 0.551382 | 4_1:-4282641 | None:intergenic |
| GATTCAGAGAAACCCTTCTC+CGG | 0.552012 | 4_1:+4278769 | Msa0530230:CDS |
| TTAACAAGCACATATTCGAC+TGG | 0.557662 | 4_1:-4280929 | None:intergenic |
| GTTACAACCTATTATGAAGG+TGG | 0.558877 | 4_1:+4282198 | Msa0530230:CDS |
| CAATGAATAAATCCATTGTA+CGG | 0.567494 | 4_1:-4282171 | None:intergenic |
| CAGAGTAAGCACGATTTCCA+AGG | 0.569528 | 4_1:-4280976 | None:intergenic |
| GAAACTGTGACGGTGGAGAA+GGG | 0.572135 | 4_1:+4278791 | Msa0530230:CDS |
| CCCTTCTCCGGAAACTGTGA+CGG | 0.575669 | 4_1:+4278781 | Msa0530230:CDS |
| CTTGCTCCAAATTCTTGGCA+AGG | 0.576003 | 4_1:-4281395 | None:intergenic |
| TGAAACTGGTCTCTGGCTGT+GGG | 0.581916 | 4_1:+4280080 | Msa0530230:CDS |
| AATTGTATGATATCTCTGCC+TGG | 0.582436 | 4_1:+4282623 | Msa0530230:three_prime_UTR |
| GGCATGTGTCCTTTCTATGG+CGG | 0.594751 | 4_1:+4281667 | Msa0530230:CDS |
| GCAAACTAATGCCAAGAACA+AGG | 0.596967 | 4_1:-4282079 | None:intergenic |
| ACGGTTATGATAACAGTGAA+AGG | 0.600043 | 4_1:-4282516 | None:intergenic |
| CATATCTTCAAGGCAACTGT+CGG | 0.613126 | 4_1:+4280165 | Msa0530230:CDS |
| AAGAGTATTAATGCCAAGCA+TGG | 0.616543 | 4_1:-4281643 | None:intergenic |
| AATTAGCGAATCCTTCATCA+CGG | 0.642911 | 4_1:-4282535 | None:intergenic |
| AGAGTAAGCACGATTTCCAA+GGG | 0.650254 | 4_1:-4280975 | None:intergenic |
| CTGCTCCGATTATCCTACTG+TGG | 0.655935 | 4_1:+4281860 | Msa0530230:CDS |
| GCTCTAAGAACATTCAGTGA+AGG | 0.667428 | 4_1:+4281013 | Msa0530230:CDS |
| CTCGCCTAATAAATCAATGG+GGG | 0.681089 | 4_1:-4282866 | None:intergenic |
| GGAATCTCAGCATATTACAA+CGG | 0.682260 | 4_1:+4281037 | Msa0530230:CDS |
| ATGGAGATCAGATCGAAGAG+CGG | 0.693343 | 4_1:+4278739 | Msa0530230:CDS |
| ACTCGCCTAATAAATCAATG+GGG | 0.708056 | 4_1:-4282867 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAA+TGG | - | chr4_1:4279381-4279400 | None:intergenic | 0.0% |
| !! | TATATTTAAAAAAAAAAAAA+AGG | - | chr4_1:4282306-4282325 | None:intergenic | 0.0% |
| !! | AAAAAAAATTAAAGTTGTAT+TGG | + | chr4_1:4280565-4280584 | Msa0530230:intron | 10.0% |
| !! | AAAAAATAATTCTAAATAGA+TGG | + | chr4_1:4281486-4281505 | Msa0530230:intron | 10.0% |
| !! | ACTAAAAATATGAATTTAAA+TGG | - | chr4_1:4281982-4282001 | None:intergenic | 10.0% |
| !! | ATTTAAAAAAAAAAAAAAGG+TGG | - | chr4_1:4282303-4282322 | None:intergenic | 10.0% |
| !! | TACAAAAACTATAATAAATT+AGG | - | chr4_1:4282935-4282954 | None:intergenic | 10.0% |
| !!! | TGATACATTTTATTAATTAG+TGG | + | chr4_1:4279793-4279812 | Msa0530230:intron | 15.0% |
| !!! | GATACATTTTATTAATTAGT+GGG | + | chr4_1:4279794-4279813 | Msa0530230:intron | 15.0% |
| !! | ACAATAAAAAATTCCATATT+AGG | - | chr4_1:4280030-4280049 | None:intergenic | 15.0% |
| !!! | TTATTGTATTATTTAACTTC+AGG | + | chr4_1:4280043-4280062 | Msa0530230:intron | 15.0% |
| !! | TAGATATAAGTTAAATGTTA+TGG | - | chr4_1:4280312-4280331 | None:intergenic | 15.0% |
| !! | AAATAGAATGAAATAATCAT+TGG | + | chr4_1:4280439-4280458 | Msa0530230:intron | 15.0% |
| !!! | CATTTTGAAACAAATATTTT+TGG | + | chr4_1:4280605-4280624 | Msa0530230:intron | 15.0% |
| !!! | TTCTTTATATATTTTGCTTA+TGG | + | chr4_1:4281159-4281178 | Msa0530230:intron | 15.0% |
| !!! | TTTAAAATTGGGTTTTATAT+CGG | + | chr4_1:4281257-4281276 | Msa0530230:intron | 15.0% |
| !! | ATTAAACATTGCTTATTATA+TGG | + | chr4_1:4282352-4282371 | Msa0530230:intron | 15.0% |
| !!! | TTTTTTTGTATTGTTTTAGT+TGG | + | chr4_1:4282785-4282804 | Msa0530230:three_prime_UTR | 15.0% |
| !! | AAAAACTATAATAAATTAGG+TGG | - | chr4_1:4282932-4282951 | None:intergenic | 15.0% |
| !!! | CTATTTGCTTTTTTTTTCTA+TGG | - | chr4_1:4279270-4279289 | None:intergenic | 20.0% |
| !!! | TATATAATGGAAAACAATTG+AGG | - | chr4_1:4279362-4279381 | None:intergenic | 20.0% |
| !!! | ACAAAATCAAACATTTTAGA+AGG | - | chr4_1:4280358-4280377 | None:intergenic | 20.0% |
| !!! | GTCTTTTTCTTATAAAGTAA+GGG | - | chr4_1:4280487-4280506 | None:intergenic | 20.0% |
| !!! | TGTCTTTTTCTTATAAAGTA+AGG | - | chr4_1:4280488-4280507 | None:intergenic | 20.0% |
| !! | AAAAATGTAAAGCTAACAAA+AGG | - | chr4_1:4280733-4280752 | None:intergenic | 20.0% |
| !! | TAATATTAGAAGTAACAGTA+AGG | - | chr4_1:4281128-4281147 | None:intergenic | 20.0% |
| !!! | TATTGGGTTTGTTTTAAAAT+TGG | + | chr4_1:4281245-4281264 | Msa0530230:intron | 20.0% |
| !!! | ATTGGGTTTGTTTTAAAATT+GGG | + | chr4_1:4281246-4281265 | Msa0530230:intron | 20.0% |
| !!! | CTTTTCTTAATTATCTTTTC+AGG | + | chr4_1:4281355-4281374 | Msa0530230:intron | 20.0% |
| !! | TAATAATTGCATTGAGTAAA+TGG | + | chr4_1:4281549-4281568 | Msa0530230:intron | 20.0% |
| !!! | TTGGTTTTAGTATAATGTAA+TGG | + | chr4_1:4281588-4281607 | Msa0530230:intron | 20.0% |
| !! | AAGACAATCATCAATAATTT+AGG | - | chr4_1:4281956-4281975 | None:intergenic | 20.0% |
| !!! | ATTTTTAGTTTAACCTTAGT+TGG | + | chr4_1:4281993-4282012 | Msa0530230:intron | 20.0% |
| !!! | TTTTTAGTTTAACCTTAGTT+GGG | + | chr4_1:4281994-4282013 | Msa0530230:intron | 20.0% |
| !!! | TCCTTTTTTGAATATATTGT+AGG | + | chr4_1:4282036-4282055 | Msa0530230:intron | 20.0% |
| !! | ACCTACAATATATTCAAAAA+AGG | - | chr4_1:4282040-4282059 | None:intergenic | 20.0% |
| !!! | ACATTGTTTCTTTTTTATTC+AGG | + | chr4_1:4282490-4282509 | Msa0530230:intron | 20.0% |
| !!! | CTTGTTATAAATAGTTTTCT+GGG | + | chr4_1:4282829-4282848 | Msa0530230:three_prime_UTR | 20.0% |
| !! | CATATAAAATGTCATTCAAA+GGG | - | chr4_1:4282963-4282982 | None:intergenic | 20.0% |
| !! | ACATATAAAATGTCATTCAA+AGG | - | chr4_1:4282964-4282983 | None:intergenic | 20.0% |
| !! | TTCATTCTTATAACACCTTT+TGG | - | chr4_1:4279138-4279157 | None:intergenic | 25.0% |
| !! | AAGAATGAAGTTTAACTTCA+AGG | + | chr4_1:4279149-4279168 | Msa0530230:intron | 25.0% |
| ! | GAAATCTTAGATCAAAGAAA+AGG | + | chr4_1:4279208-4279227 | Msa0530230:intron | 25.0% |
| !! | CTTTCCATAGTTATAGTTTT+GGG | + | chr4_1:4279441-4279460 | Msa0530230:intron | 25.0% |
| ! | AAAACCCAAAACTATAACTA+TGG | - | chr4_1:4279448-4279467 | None:intergenic | 25.0% |
| !!! | ATAGTTATAGTTTTGGGTTT+TGG | + | chr4_1:4279447-4279466 | Msa0530230:intron | 25.0% |
| ! | ACACCTTCATAAAAATTAGT+TGG | + | chr4_1:4279552-4279571 | Msa0530230:intron | 25.0% |
| !! | ACACCAACTAATTTTTATGA+AGG | - | chr4_1:4279558-4279577 | None:intergenic | 25.0% |
| !!! | AAACCCTATAGTTTTAATAG+TGG | + | chr4_1:4279632-4279651 | Msa0530230:intron | 25.0% |
| ! | ACTCCACTATTAAAACTATA+GGG | - | chr4_1:4279638-4279657 | None:intergenic | 25.0% |
| ! | TACTCCACTATTAAAACTAT+AGG | - | chr4_1:4279639-4279658 | None:intergenic | 25.0% |
| ! | TAAAATTGACAGTGTATGAA+TGG | - | chr4_1:4279681-4279700 | None:intergenic | 25.0% |
| !! | ATTCATACACTGTCAATTTT+AGG | + | chr4_1:4279680-4279699 | Msa0530230:intron | 25.0% |
| ! | ATAGTGTGATTAAAGAAAAG+GGG | - | chr4_1:4280007-4280026 | None:intergenic | 25.0% |
| ! | GATAGTGTGATTAAAGAAAA+GGG | - | chr4_1:4280008-4280027 | None:intergenic | 25.0% |
| ! | TTAATCACACTATCCTAATA+TGG | + | chr4_1:4280014-4280033 | Msa0530230:intron | 25.0% |
| !! | GTATTATTTAACTTCAGGTT+TGG | + | chr4_1:4280048-4280067 | Msa0530230:intron | 25.0% |
| !! | TATTTCATGTTCCTTTTACA+AGG | - | chr4_1:4280790-4280809 | None:intergenic | 25.0% |
| !! | AAGACAAAAGTTAGTCTATT+GGG | - | chr4_1:4280842-4280861 | None:intergenic | 25.0% |
| !! | AAAGACAAAAGTTAGTCTAT+TGG | - | chr4_1:4280843-4280862 | None:intergenic | 25.0% |
| !!! | TTTTTTTGAATCTCTTGTTC+AGG | + | chr4_1:4280860-4280879 | Msa0530230:intron | 25.0% |
| ! | AAGAAAACAAAAATACCATG+AGG | - | chr4_1:4281096-4281115 | None:intergenic | 25.0% |
| !!! | CAATTATTTTGATCTGTCAT+TGG | + | chr4_1:4281511-4281530 | Msa0530230:intron | 25.0% |
| ! | CAATGCAATTATTAGCAAAA+TGG | - | chr4_1:4281543-4281562 | None:intergenic | 25.0% |
| ! | AGTTTGTAAGAATTCAAAGA+TGG | + | chr4_1:4282115-4282134 | Msa0530230:CDS | 25.0% |
| ! | CAATGAATAAATCCATTGTA+CGG | - | chr4_1:4282174-4282193 | None:intergenic | 25.0% |
| ! | ATTGTTACAACCTATTATGA+AGG | + | chr4_1:4282195-4282214 | Msa0530230:CDS | 25.0% |
| ! | TTGAAATCCAGTATAAAAGT+TGG | - | chr4_1:4282229-4282248 | None:intergenic | 25.0% |
| ! | AAAAAAAAAGGTGGTAATAG+TGG | - | chr4_1:4282294-4282313 | None:intergenic | 25.0% |
| ! | GCTCATATTAGAAAATTGTT+CGG | + | chr4_1:4282598-4282617 | Msa0530230:three_prime_UTR | 25.0% |
| !!! | TGGTTTTGAAATTTGTAGTT+TGG | + | chr4_1:4282726-4282745 | Msa0530230:three_prime_UTR | 25.0% |
| ! | TGACAAAATCCATATTTGAT+TGG | - | chr4_1:4282762-4282781 | None:intergenic | 25.0% |
| !!! | GCTTGTTATAAATAGTTTTC+TGG | + | chr4_1:4282828-4282847 | Msa0530230:three_prime_UTR | 25.0% |
| ! | ATGCTCAATTTCACAAATTA+GGG | - | chr4_1:4282904-4282923 | None:intergenic | 25.0% |
| ! | AATGCTCAATTTCACAAATT+AGG | - | chr4_1:4282905-4282924 | None:intergenic | 25.0% |
| ! | ACAAAAGTGAAAAAGACAAT+TGG | + | chr4_1:4283016-4283035 | Msa0530230:three_prime_UTR | 25.0% |
| ! | TAAGGTTGAAGTTTAGGTTT+CGG | + | chr4_1:4278900-4278919 | Msa0530230:intron | 30.0% |
| TCGGTTATGTGTAGAAATTA+CGG | + | chr4_1:4278919-4278938 | Msa0530230:intron | 30.0% | |
| AATGCTTACGCTCTTAAATA+GGG | - | chr4_1:4279239-4279258 | None:intergenic | 30.0% | |
| ! | TGATTCTCTTTATTTCCATG+AGG | + | chr4_1:4279321-4279340 | Msa0530230:intron | 30.0% |
| AAATTGGAAAACTAACCTCA+TGG | - | chr4_1:4279339-4279358 | None:intergenic | 30.0% | |
| TGGAAAACAATTGAGGAAAT+TGG | - | chr4_1:4279355-4279374 | None:intergenic | 30.0% | |
| CCAAAACTATAACTATGGAA+AGG | - | chr4_1:4279443-4279462 | None:intergenic | 30.0% | |
| ! | CCTTTCCATAGTTATAGTTT+TGG | + | chr4_1:4279440-4279459 | Msa0530230:intron | 30.0% |
| AACATTGTGTTTCATACTTC+TGG | + | chr4_1:4279866-4279885 | Msa0530230:CDS | 30.0% | |
| TAGTGTGATTAAAGAAAAGG+GGG | - | chr4_1:4280006-4280025 | None:intergenic | 30.0% | |
| GGATAGTGTGATTAAAGAAA+AGG | - | chr4_1:4280009-4280028 | None:intergenic | 30.0% | |
| AATAGTAAGAGTCGTGATAT+TGG | + | chr4_1:4280119-4280138 | Msa0530230:CDS | 30.0% | |
| !!! | ATATTGGTTTTCTTTCACTG+TGG | + | chr4_1:4280135-4280154 | Msa0530230:CDS | 30.0% |
| !!! | TATTGGTTTTCTTTCACTGT+GGG | + | chr4_1:4280136-4280155 | Msa0530230:CDS | 30.0% |
| ! | CAACTTGTTTGATTGAATCT+TGG | + | chr4_1:4280286-4280305 | Msa0530230:intron | 30.0% |
| !! | TTTTAGAAGGTTGCTTACAT+AGG | - | chr4_1:4280345-4280364 | None:intergenic | 30.0% |
| AAATTGTGTGAGAGAAAAGT+TGG | + | chr4_1:4280526-4280545 | Msa0530230:intron | 30.0% | |
| TCGCAATGTAAAATAGGATT+TGG | - | chr4_1:4280694-4280713 | None:intergenic | 30.0% | |
| AACAAAAATACCATGAGGTA+AGG | - | chr4_1:4281091-4281110 | None:intergenic | 30.0% | |
| AAATGCTCCATCTCTAATAT+TGG | + | chr4_1:4281228-4281247 | Msa0530230:CDS | 30.0% | |
| AATGCTCCATCTCTAATATT+GGG | + | chr4_1:4281229-4281248 | Msa0530230:CDS | 30.0% | |
| AACAAACCCAATATTAGAGA+TGG | - | chr4_1:4281238-4281257 | None:intergenic | 30.0% | |
| AACAACAAAAAGAAAGCCAT+CGG | - | chr4_1:4281295-4281314 | None:intergenic | 30.0% | |
| TGCGTTTAAGAATTTACGTT+TGG | + | chr4_1:4281428-4281447 | Msa0530230:CDS | 30.0% | |
| GCAATTATTAGCAAAATGGT+TGG | - | chr4_1:4281539-4281558 | None:intergenic | 30.0% | |
| AGTAAATGGTTTGACATTGT+AGG | + | chr4_1:4281563-4281582 | Msa0530230:intron | 30.0% | |
| TTAACATTTGTTTCAGCATC+TGG | + | chr4_1:4281777-4281796 | Msa0530230:intron | 30.0% | |
| TAACATTTGTTTCAGCATCT+GGG | + | chr4_1:4281778-4281797 | Msa0530230:intron | 30.0% | |
| TATCTTTGTCATACTAAGAG+TGG | + | chr4_1:4281835-4281854 | Msa0530230:CDS | 30.0% | |
| GAAATATATGATTCCACAGT+AGG | - | chr4_1:4281876-4281895 | None:intergenic | 30.0% | |
| TATTTCATGAAGCATACTCT+TGG | + | chr4_1:4281890-4281909 | Msa0530230:CDS | 30.0% | |
| AGTGACATGAATGTTATTGT+TGG | + | chr4_1:4281917-4281936 | Msa0530230:CDS | 30.0% | |
| TGAATTCTTACAAACTCAAG+TGG | - | chr4_1:4282111-4282130 | None:intergenic | 30.0% | |
| AAACTATAACTGCGAATGAA+AGG | - | chr4_1:4282571-4282590 | None:intergenic | 30.0% | |
| CAAATTTCAAAACCAACCAT+TGG | - | chr4_1:4282721-4282740 | None:intergenic | 30.0% | |
| ATTTGTAGTTTGGAAACCAA+TGG | + | chr4_1:4282736-4282755 | Msa0530230:three_prime_UTR | 30.0% | |
| !!! | TTGTTTTAGTTGGCTTTTGA+AGG | + | chr4_1:4282795-4282814 | Msa0530230:three_prime_UTR | 30.0% |
| AATAAATCAATGGGGGTAAA+GGG | - | chr4_1:4282862-4282881 | None:intergenic | 30.0% | |
| TAATAAATCAATGGGGGTAA+AGG | - | chr4_1:4282863-4282882 | None:intergenic | 30.0% | |
| !! | TTTACCCCCATTGATTTATT+AGG | + | chr4_1:4282862-4282881 | Msa0530230:three_prime_UTR | 30.0% |
| AACTCGCCTAATAAATCAAT+GGG | - | chr4_1:4282871-4282890 | None:intergenic | 30.0% | |
| CAGTTGTAAGGTTGAAGTTT+AGG | + | chr4_1:4278894-4278913 | Msa0530230:intron | 35.0% | |
| GTTATGTGTAGAAATTACGG+CGG | + | chr4_1:4278922-4278941 | Msa0530230:intron | 35.0% | |
| ! | TGTTGCAAGGTCTAAAGTTT+AGG | + | chr4_1:4278962-4278981 | Msa0530230:intron | 35.0% |
| !! | TAGGTGATGTTTGATAGTGA+AGG | + | chr4_1:4278981-4279000 | Msa0530230:intron | 35.0% |
| CAATGCTTACGCTCTTAAAT+AGG | - | chr4_1:4279240-4279259 | None:intergenic | 35.0% | |
| ATTGCTAAAAGACACCTTCA+CGG | - | chr4_1:4279482-4279501 | None:intergenic | 35.0% | |
| !! | AAGTTGATAATCACACCTTG+AGG | - | chr4_1:4279510-4279529 | None:intergenic | 35.0% |
| AATTGACAGTGTATGAATGG+TGG | - | chr4_1:4279678-4279697 | None:intergenic | 35.0% | |
| !! | TTACTATTGCAAGAGCACTA+TGG | - | chr4_1:4280107-4280126 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr4_1:4280595-4280614 | None:intergenic | 35.0% |
| !! | TTCAAAATGAGTGTCGCTTT+AGG | + | chr4_1:4280397-4280416 | Msa0530230:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr4_1:4280595-4280614 | Msa0530230:intron | 35.0% |
| CATTGTTGAGTTAAACATGC+AGG | - | chr4_1:4280756-4280775 | None:intergenic | 35.0% | |
| ACCAAGTGTTACCTTGTAAA+AGG | + | chr4_1:4280776-4280795 | Msa0530230:intron | 35.0% | |
| ! | TCCTTTTACAAGGTAACACT+TGG | - | chr4_1:4280780-4280799 | None:intergenic | 35.0% |
| ! | TTTTGAATCTCTTGTTCAGG+TGG | + | chr4_1:4280863-4280882 | Msa0530230:intron | 35.0% |
| TTAACAAGCACATATTCGAC+TGG | - | chr4_1:4280932-4280951 | None:intergenic | 35.0% | |
| ! | ATGTGCTTGTTAAACTTCGA+AGG | + | chr4_1:4280939-4280958 | Msa0530230:CDS | 35.0% |
| GGAATCTCAGCATATTACAA+CGG | + | chr4_1:4281037-4281056 | Msa0530230:CDS | 35.0% | |
| AAAATCTTGAAGCAGTGGTT+TGG | - | chr4_1:4281067-4281086 | None:intergenic | 35.0% | |
| AAGGAAAAATCTTGAAGCAG+TGG | - | chr4_1:4281072-4281091 | None:intergenic | 35.0% | |
| ! | CAAGATTTTTCCTTACCTCA+TGG | + | chr4_1:4281078-4281097 | Msa0530230:CDS | 35.0% |
| TAGACGTTGACAATTGTCAT+TGG | + | chr4_1:4281201-4281220 | Msa0530230:intron | 35.0% | |
| ACAACAAAAAGAAAGCCATC+GGG | - | chr4_1:4281294-4281313 | None:intergenic | 35.0% | |
| ! | TGGTTTGACATTGTAGGTTT+TGG | + | chr4_1:4281569-4281588 | Msa0530230:intron | 35.0% |
| !! | AAGAGTATTAATGCCAAGCA+TGG | - | chr4_1:4281646-4281665 | None:intergenic | 35.0% |
| TGCTTGGCATTAATACTCTT+AGG | + | chr4_1:4281646-4281665 | Msa0530230:CDS | 35.0% | |
| CTCACATGAACATTCTGATT+GGG | - | chr4_1:4281693-4281712 | None:intergenic | 35.0% | |
| ACTCACATGAACATTCTGAT+TGG | - | chr4_1:4281694-4281713 | None:intergenic | 35.0% | |
| TGATTCCACAGTAGGATAAT+CGG | - | chr4_1:4281868-4281887 | None:intergenic | 35.0% | |
| !! | AACCTTAGTTGGGTTTTATC+AGG | + | chr4_1:4282004-4282023 | Msa0530230:intron | 35.0% |
| AACCTGATAAAACCCAACTA+AGG | - | chr4_1:4282009-4282028 | None:intergenic | 35.0% | |
| AGTTACTGTATCCTTGTTCT+TGG | + | chr4_1:4282068-4282087 | Msa0530230:CDS | 35.0% | |
| GTTACAACCTATTATGAAGG+TGG | + | chr4_1:4282198-4282217 | Msa0530230:CDS | 35.0% | |
| !!! | GGATTAGCCAACTTTTATAC+TGG | + | chr4_1:4282219-4282238 | Msa0530230:CDS | 35.0% |
| AAGCAGAAATCATGGAAGAA+TGG | - | chr4_1:4282254-4282273 | None:intergenic | 35.0% | |
| CACAAGATAAGCAGAAATCA+TGG | - | chr4_1:4282262-4282281 | None:intergenic | 35.0% | |
| CATGATTTCTGCTTATCTTG+TGG | + | chr4_1:4282260-4282279 | Msa0530230:CDS | 35.0% | |
| ACGGTTATGATAACAGTGAA+AGG | - | chr4_1:4282519-4282538 | None:intergenic | 35.0% | |
| TGTTATCATAACCGTGATGA+AGG | + | chr4_1:4282524-4282543 | Msa0530230:CDS | 35.0% | |
| AATTAGCGAATCCTTCATCA+CGG | - | chr4_1:4282538-4282557 | None:intergenic | 35.0% | |
| AATTGTATGATATCTCTGCC+TGG | + | chr4_1:4282623-4282642 | Msa0530230:three_prime_UTR | 35.0% | |
| TGCTACAAAATTCGGAGTAT+TGG | - | chr4_1:4282680-4282699 | None:intergenic | 35.0% | |
| ! | TCCGAATTTTGTAGCATGTT+TGG | + | chr4_1:4282684-4282703 | Msa0530230:three_prime_UTR | 35.0% |
| CCCAAACATGCTACAAAATT+CGG | - | chr4_1:4282688-4282707 | None:intergenic | 35.0% | |
| ! | CCGAATTTTGTAGCATGTTT+GGG | + | chr4_1:4282685-4282704 | Msa0530230:three_prime_UTR | 35.0% |
| TTTGGGCAATCAAAAACCAA+TGG | + | chr4_1:4282702-4282721 | Msa0530230:three_prime_UTR | 35.0% | |
| AACCAATGGCCAATCAAATA+TGG | + | chr4_1:4282750-4282769 | Msa0530230:three_prime_UTR | 35.0% | |
| ! | ATCCATATTTGATTGGCCAT+TGG | - | chr4_1:4282755-4282774 | None:intergenic | 35.0% |
| ACTCGCCTAATAAATCAATG+GGG | - | chr4_1:4282870-4282889 | None:intergenic | 35.0% | |
| CAACTCGCCTAATAAATCAA+TGG | - | chr4_1:4282872-4282891 | None:intergenic | 35.0% | |
| TTCACAAATTAGGGTGGAAA+TGG | - | chr4_1:4282895-4282914 | None:intergenic | 35.0% | |
| CTCAATTTCACAAATTAGGG+TGG | - | chr4_1:4282901-4282920 | None:intergenic | 35.0% | |
| GTGTTCGAAGGTTGAAGTTT+CGG | + | chr4_1:4278823-4278842 | Msa0530230:intron | 40.0% | |
| ! | GAAGGTTGTGAAAAGCATAG+AGG | + | chr4_1:4278999-4279018 | Msa0530230:intron | 40.0% |
| ! | TAGATCGAAGAGCATGTGAA+AGG | + | chr4_1:4279041-4279060 | Msa0530230:intron | 40.0% |
| !! | GTTTTCAGGGAAGAAGAAAG+CGG | - | chr4_1:4279100-4279119 | None:intergenic | 40.0% |
| GCTTTCTTCTTCCCTGAAAA+CGG | + | chr4_1:4279099-4279118 | Msa0530230:intron | 40.0% | |
| ! | CCTAGTAATTTGTCCCACAT+CGG | + | chr4_1:4279184-4279203 | Msa0530230:intron | 40.0% |
| ! | CTAGTAATTTGTCCCACATC+GGG | + | chr4_1:4279185-4279204 | Msa0530230:intron | 40.0% |
| ! | TAGTAATTTGTCCCACATCG+GGG | + | chr4_1:4279186-4279205 | Msa0530230:intron | 40.0% |
| ! | ATCTAAGATTTCCCCGATGT+GGG | - | chr4_1:4279200-4279219 | None:intergenic | 40.0% |
| ! | TTTTAGCAATCCACACCTCA+AGG | + | chr4_1:4279492-4279511 | Msa0530230:intron | 40.0% |
| AAGATTCCACACCTTCATCA+AGG | + | chr4_1:4279596-4279615 | Msa0530230:intron | 40.0% | |
| AGATTCCACACCTTCATCAA+GGG | + | chr4_1:4279597-4279616 | Msa0530230:intron | 40.0% | |
| ACGCTAGAACAACGATCAAA+AGG | - | chr4_1:4279896-4279915 | None:intergenic | 40.0% | |
| GACGCTAAGACAATAGTGAT+TGG | - | chr4_1:4279963-4279982 | None:intergenic | 40.0% | |
| ATTGTCTTAGCGTCTGAGTA+TGG | + | chr4_1:4279969-4279988 | Msa0530230:intron | 40.0% | |
| TTGTCTTAGCGTCTGAGTAT+GGG | + | chr4_1:4279970-4279989 | Msa0530230:intron | 40.0% | |
| ! | TTTGGAGTTGATCGTGAAAC+TGG | + | chr4_1:4280066-4280085 | Msa0530230:CDS | 40.0% |
| TGGGATGCTTCATATCTTCA+AGG | + | chr4_1:4280155-4280174 | Msa0530230:CDS | 40.0% | |
| CATATCTTCAAGGCAACTGT+CGG | + | chr4_1:4280165-4280184 | Msa0530230:CDS | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr4_1:4280635-4280654 | None:intergenic | 40.0% |
| TGTGAGAGAAAAGTTGGAGA+GGG | + | chr4_1:4280532-4280551 | Msa0530230:intron | 40.0% | |
| AAAGTTGGAGAGGGTTAAGT+TGG | + | chr4_1:4280541-4280560 | Msa0530230:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr4_1:4280635-4280654 | Msa0530230:intron | 40.0% |
| GGCTCATCGCAATGTAAAAT+AGG | - | chr4_1:4280700-4280719 | None:intergenic | 40.0% | |
| CTAACAAAAGGAGAGACAAC+AGG | - | chr4_1:4280721-4280740 | None:intergenic | 40.0% | |
| ! | TATTGGGTATGAAGAGTGTG+TGG | - | chr4_1:4280826-4280845 | None:intergenic | 40.0% |
| AGAGTAAGCACGATTTCCAA+GGG | - | chr4_1:4280978-4280997 | None:intergenic | 40.0% | |
| !! | GCTCTAAGAACATTCAGTGA+AGG | + | chr4_1:4281013-4281032 | Msa0530230:CDS | 40.0% |
| CTAAGAACATTCAGTGAAGG+TGG | + | chr4_1:4281016-4281035 | Msa0530230:CDS | 40.0% | |
| ACGTTGACAATTGTCATTGG+TGG | + | chr4_1:4281204-4281223 | Msa0530230:CDS | 40.0% | |
| CAACAAAAAGAAAGCCATCG+GGG | - | chr4_1:4281293-4281312 | None:intergenic | 40.0% | |
| TTAGGCATGTGTCCTTTCTA+TGG | + | chr4_1:4281664-4281683 | Msa0530230:CDS | 40.0% | |
| TAACCTGTTCCAAAGCTTTC+TGG | - | chr4_1:4281817-4281836 | None:intergenic | 40.0% | |
| GCAAACTAATGCCAAGAACA+AGG | - | chr4_1:4282082-4282101 | None:intergenic | 40.0% | |
| GGCTAATCCACCTTCATAAT+AGG | - | chr4_1:4282208-4282227 | None:intergenic | 40.0% | |
| GTATCTGACAATGGCTAAGT+TGG | + | chr4_1:4282455-4282474 | Msa0530230:intron | 40.0% | |
| GACAAGAGTTAAAATGCTCC+AGG | - | chr4_1:4282644-4282663 | None:intergenic | 40.0% | |
| GGCAATCAAAAACCAATGGT+TGG | + | chr4_1:4282706-4282725 | Msa0530230:three_prime_UTR | 40.0% | |
| CTCGCCTAATAAATCAATGG+GGG | - | chr4_1:4282869-4282888 | None:intergenic | 40.0% | |
| ATGGAGATCAGATCGAAGAG+CGG | + | chr4_1:4278739-4278758 | Msa0530230:CDS | 45.0% | |
| GATTCAGAGAAACCCTTCTC+CGG | + | chr4_1:4278769-4278788 | Msa0530230:CDS | 45.0% | |
| AGGTTCAGAGAGCAGTTGTA+AGG | + | chr4_1:4278882-4278901 | Msa0530230:intron | 45.0% | |
| TGTAGAAATTACGGCGGAGA+AGG | + | chr4_1:4278928-4278947 | Msa0530230:intron | 45.0% | |
| GTAGAAATTACGGCGGAGAA+GGG | + | chr4_1:4278929-4278948 | Msa0530230:intron | 45.0% | |
| ! | TGTGAAAAGCATAGAGGCTG+TGG | + | chr4_1:4279005-4279024 | Msa0530230:intron | 45.0% |
| ! | CCTCACTATCACCGTTTTCA+GGG | - | chr4_1:4279113-4279132 | None:intergenic | 45.0% |
| ! | CCTGAAAACGGTGATAGTGA+GGG | + | chr4_1:4279111-4279130 | Msa0530230:intron | 45.0% |
| ! | CTGAAAACGGTGATAGTGAG+GGG | + | chr4_1:4279112-4279131 | Msa0530230:intron | 45.0% |
| CCGATGTGGGACAAATTACT+AGG | - | chr4_1:4279187-4279206 | None:intergenic | 45.0% | |
| ! | GATCTAAGATTTCCCCGATG+TGG | - | chr4_1:4279201-4279220 | None:intergenic | 45.0% |
| TTTGGTAGAAGACACCGTGA+AGG | + | chr4_1:4279465-4279484 | Msa0530230:intron | 45.0% | |
| GATAATCACACCTTGAGGTG+TGG | - | chr4_1:4279505-4279524 | None:intergenic | 45.0% | |
| CTAGAAGACACCCTTGATGA+AGG | - | chr4_1:4279610-4279629 | None:intergenic | 45.0% | |
| ! | TTGATCGTGAAACTGGTCTC+TGG | + | chr4_1:4280073-4280092 | Msa0530230:CDS | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr4_1:4280634-4280653 | None:intergenic | 45.0% |
| GTGTGAGAGAAAAGTTGGAG+AGG | + | chr4_1:4280531-4280550 | Msa0530230:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr4_1:4280634-4280653 | Msa0530230:intron | 45.0% |
| AGGACACAACTTTATGCCCT+TGG | + | chr4_1:4280959-4280978 | Msa0530230:CDS | 45.0% | |
| CAGAGTAAGCACGATTTCCA+AGG | - | chr4_1:4280979-4280998 | None:intergenic | 45.0% | |
| CTTGGAAATCGTGCTTACTC+TGG | + | chr4_1:4280977-4280996 | Msa0530230:CDS | 45.0% | |
| AAAAAGAAAGCCATCGGGGA+GGG | - | chr4_1:4281289-4281308 | None:intergenic | 45.0% | |
| CTCCAAATTCTTGGCAAGGA+CGG | - | chr4_1:4281394-4281413 | None:intergenic | 45.0% | |
| CTTGCTCCAAATTCTTGGCA+AGG | - | chr4_1:4281398-4281417 | None:intergenic | 45.0% | |
| ! | GACAGCTTGCTCCAAATTCT+TGG | - | chr4_1:4281403-4281422 | None:intergenic | 45.0% |
| !! | ACGTTTGGCTCTGTTGTATC+AGG | + | chr4_1:4281443-4281462 | Msa0530230:CDS | 45.0% |
| CATGCAGTTTCTACCATGCT+TGG | + | chr4_1:4281630-4281649 | Msa0530230:intron | 45.0% | |
| TCAGACTTGCCAGAAAGCTT+TGG | + | chr4_1:4281805-4281824 | Msa0530230:CDS | 45.0% | |
| !! | TTGCCAGAAAGCTTTGGAAC+AGG | + | chr4_1:4281811-4281830 | Msa0530230:CDS | 45.0% |
| GCTTATTATATGGCAGCTGC+TGG | + | chr4_1:4282362-4282381 | Msa0530230:intron | 45.0% | |
| TTCTCGACTCTGACTGTTCT+AGG | + | chr4_1:4282400-4282419 | Msa0530230:CDS | 45.0% | |
| CAGATACGAAAGCCACACAA+GGG | - | chr4_1:4282442-4282461 | None:intergenic | 45.0% | |
| TCAGATACGAAAGCCACACA+AGG | - | chr4_1:4282443-4282462 | None:intergenic | 45.0% | |
| GTGGCTTTCGTATCTGACAA+TGG | + | chr4_1:4282446-4282465 | Msa0530230:intron | 45.0% | |
| CTGCGAATGAAAGGACAAAC+TGG | - | chr4_1:4282562-4282581 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTAAATATATTTGA+TGG | + | chr4_1:4282311-4282330 | Msa0530230:intron | 5.0% |
| TTCTCCACCGTCACAGTTTC+CGG | - | chr4_1:4278791-4278810 | None:intergenic | 50.0% | |
| GAAACTGTGACGGTGGAGAA+GGG | + | chr4_1:4278791-4278810 | Msa0530230:CDS | 50.0% | |
| TGAGAAGTGACGGTGGAGAA+GGG | + | chr4_1:4278853-4278872 | Msa0530230:intron | 50.0% | |
| ! | AAAAGCATAGAGGCTGTGGC+AGG | + | chr4_1:4279009-4279028 | Msa0530230:intron | 50.0% |
| AAAGCATAGAGGCTGTGGCA+GGG | + | chr4_1:4279010-4279029 | Msa0530230:intron | 50.0% | |
| AAAGGACGAGAAGCAGACAC+CGG | + | chr4_1:4279059-4279078 | Msa0530230:intron | 50.0% | |
| ! | CCCTGAAAACGGTGATAGTG+AGG | + | chr4_1:4279110-4279129 | Msa0530230:intron | 50.0% |
| ! | CCCTCACTATCACCGTTTTC+AGG | - | chr4_1:4279114-4279133 | None:intergenic | 50.0% |
| AGACACCCTTGATGAAGGTG+TGG | - | chr4_1:4279605-4279624 | None:intergenic | 50.0% | |
| ! | TGAAACTGGTCTCTGGCTGT+GGG | + | chr4_1:4280080-4280099 | Msa0530230:CDS | 50.0% |
| AAAAGAAAGCCATCGGGGAG+GGG | - | chr4_1:4281288-4281307 | None:intergenic | 50.0% | |
| CAAAAAGAAAGCCATCGGGG+AGG | - | chr4_1:4281290-4281309 | None:intergenic | 50.0% | |
| AAATTCTTGGCAAGGACGGC+TGG | - | chr4_1:4281390-4281409 | None:intergenic | 50.0% | |
| AGCCGTCCTTGCCAAGAATT+TGG | + | chr4_1:4281389-4281408 | Msa0530230:CDS | 50.0% | |
| GGCATGTGTCCTTTCTATGG+CGG | + | chr4_1:4281667-4281686 | Msa0530230:CDS | 50.0% | |
| CTGCTCCGATTATCCTACTG+TGG | + | chr4_1:4281860-4281879 | Msa0530230:CDS | 50.0% | |
| GAGAATCGTCGTCCGTACAA+TGG | + | chr4_1:4282159-4282178 | Msa0530230:CDS | 50.0% | |
| TAAACGCTCCTTCCCTTGTG+TGG | + | chr4_1:4282427-4282446 | Msa0530230:intron | 50.0% | |
| TACGAAAGCCACACAAGGGA+AGG | - | chr4_1:4282438-4282457 | None:intergenic | 50.0% | |
| CCGTCACAGTTTCCGGAGAA+GGG | - | chr4_1:4278784-4278803 | None:intergenic | 55.0% | |
| CCCTTCTCCGGAAACTGTGA+CGG | + | chr4_1:4278781-4278800 | Msa0530230:CDS | 55.0% | |
| ACCGTCACAGTTTCCGGAGA+AGG | - | chr4_1:4278785-4278804 | None:intergenic | 55.0% | |
| TTCTCCGGAAACTGTGACGG+TGG | + | chr4_1:4278784-4278803 | Msa0530230:CDS | 55.0% | |
| GGAAACTGTGACGGTGGAGA+AGG | + | chr4_1:4278790-4278809 | Msa0530230:CDS | 55.0% | |
| !! | GGGTTGAGAGAGGTGTTCGA+AGG | + | chr4_1:4278811-4278830 | Msa0530230:intron | 55.0% |
| CGGCCATGTGTGAGAAGTGA+CGG | + | chr4_1:4278843-4278862 | Msa0530230:intron | 55.0% | |
| CCACCGTCACTTCTCACACA+TGG | - | chr4_1:4278849-4278868 | None:intergenic | 55.0% | |
| CCATGTGTGAGAAGTGACGG+TGG | + | chr4_1:4278846-4278865 | Msa0530230:intron | 55.0% | |
| GTGAGAAGTGACGGTGGAGA+AGG | + | chr4_1:4278852-4278871 | Msa0530230:intron | 55.0% | |
| GAGAAGTGACGGTGGAGAAG+GGG | + | chr4_1:4278854-4278873 | Msa0530230:intron | 55.0% | |
| AGAAGTGACGGTGGAGAAGG+GGG | + | chr4_1:4278855-4278874 | Msa0530230:intron | 55.0% | |
| ! | GGGTTCAGACAGGTGTTGCA+AGG | + | chr4_1:4278949-4278968 | Msa0530230:intron | 55.0% |
| ! | GGTGATAGTGAGGGGCCAAA+AGG | + | chr4_1:4279120-4279139 | Msa0530230:intron | 55.0% |
| ! | GTGAAACTGGTCTCTGGCTG+TGG | + | chr4_1:4280079-4280098 | Msa0530230:CDS | 55.0% |
| CTTCAAGGCAACTGTCGGTC+TGG | + | chr4_1:4280170-4280189 | Msa0530230:CDS | 55.0% | |
| AAGGCAACTGTCGGTCTGGA+AGG | + | chr4_1:4280174-4280193 | Msa0530230:CDS | 55.0% | |
| AAAGAAAGCCATCGGGGAGG+GGG | - | chr4_1:4281287-4281306 | None:intergenic | 55.0% | |
| CTGATTGGGCCGCCATAGAA+AGG | - | chr4_1:4281679-4281698 | None:intergenic | 55.0% | |
| CGGTGGAGAAGGGTTGAGAG+AGG | + | chr4_1:4278801-4278820 | Msa0530230:CDS | 60.0% | |
| GAAGTGACGGTGGAGAAGGG+GGG | + | chr4_1:4278856-4278875 | Msa0530230:intron | 60.0% | |
| AAGAAAGCCATCGGGGAGGG+GGG | - | chr4_1:4281286-4281305 | None:intergenic | 60.0% | |
| ACGGTGGAGAAGGGGGGAGA+AGG | + | chr4_1:4278862-4278881 | Msa0530230:intron | 65.0% | |
| CGGCGGAGAAGGGTTCAGAC+AGG | + | chr4_1:4278939-4278958 | Msa0530230:intron | 65.0% | |
| GCATAGAGGCTGTGGCAGGG+AGG | + | chr4_1:4279013-4279032 | Msa0530230:intron | 65.0% | |
| GGACGAGAAGCAGACACCGG+CGG | + | chr4_1:4279062-4279081 | Msa0530230:intron | 65.0% | |
| AGCAGACACCGGCGGCGAAT+TGG | + | chr4_1:4279070-4279089 | Msa0530230:intron | 65.0% | |
| GCGGCTTTCCAATTCGCCGC+CGG | - | chr4_1:4279081-4279100 | None:intergenic | 65.0% | |
| TCGGCATCCCCCCTCCCCGA+TGG | + | chr4_1:4281276-4281295 | Msa0530230:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 4278739 | 4283114 | 4278739 | ID=Msa0530230;Name=Msa0530230 |
| chr4_1 | mRNA | 4278739 | 4283114 | 4278739 | ID=Msa0530230-mRNA-1;Parent=Msa0530230;Name=Msa0530230-mRNA-1;_AED=0.16;_eAED=0.22;_QI=0|0.7|0.81|1|1|1|11|527|399 |
| chr4_1 | exon | 4278739 | 4278822 | 4278739 | ID=Msa0530230-mRNA-1:exon:1235;Parent=Msa0530230-mRNA-1 |
| chr4_1 | exon | 4279861 | 4279913 | 4279861 | ID=Msa0530230-mRNA-1:exon:1236;Parent=Msa0530230-mRNA-1 |
| chr4_1 | exon | 4280065 | 4280213 | 4280065 | ID=Msa0530230-mRNA-1:exon:1237;Parent=Msa0530230-mRNA-1 |
| chr4_1 | exon | 4280882 | 4281099 | 4280882 | ID=Msa0530230-mRNA-1:exon:1238;Parent=Msa0530230-mRNA-1 |
| chr4_1 | exon | 4281204 | 4281250 | 4281204 | ID=Msa0530230-mRNA-1:exon:1239;Parent=Msa0530230-mRNA-1 |
| chr4_1 | exon | 4281377 | 4281464 | 4281377 | ID=Msa0530230-mRNA-1:exon:1240;Parent=Msa0530230-mRNA-1 |
| chr4_1 | exon | 4281637 | 4281707 | 4281637 | ID=Msa0530230-mRNA-1:exon:1241;Parent=Msa0530230-mRNA-1 |
| chr4_1 | exon | 4281793 | 4281938 | 4281793 | ID=Msa0530230-mRNA-1:exon:1242;Parent=Msa0530230-mRNA-1 |
| chr4_1 | exon | 4282058 | 4282281 | 4282058 | ID=Msa0530230-mRNA-1:exon:1243;Parent=Msa0530230-mRNA-1 |
| chr4_1 | exon | 4282378 | 4282421 | 4282378 | ID=Msa0530230-mRNA-1:exon:1244;Parent=Msa0530230-mRNA-1 |
| chr4_1 | exon | 4282512 | 4283114 | 4282512 | ID=Msa0530230-mRNA-1:exon:1245;Parent=Msa0530230-mRNA-1 |
| chr4_1 | CDS | 4278739 | 4278822 | 4278739 | ID=Msa0530230-mRNA-1:cds;Parent=Msa0530230-mRNA-1 |
| chr4_1 | CDS | 4279861 | 4279913 | 4279861 | ID=Msa0530230-mRNA-1:cds;Parent=Msa0530230-mRNA-1 |
| chr4_1 | CDS | 4280065 | 4280213 | 4280065 | ID=Msa0530230-mRNA-1:cds;Parent=Msa0530230-mRNA-1 |
| chr4_1 | CDS | 4280882 | 4281099 | 4280882 | ID=Msa0530230-mRNA-1:cds;Parent=Msa0530230-mRNA-1 |
| chr4_1 | CDS | 4281204 | 4281250 | 4281204 | ID=Msa0530230-mRNA-1:cds;Parent=Msa0530230-mRNA-1 |
| chr4_1 | CDS | 4281377 | 4281464 | 4281377 | ID=Msa0530230-mRNA-1:cds;Parent=Msa0530230-mRNA-1 |
| chr4_1 | CDS | 4281637 | 4281707 | 4281637 | ID=Msa0530230-mRNA-1:cds;Parent=Msa0530230-mRNA-1 |
| chr4_1 | CDS | 4281793 | 4281938 | 4281793 | ID=Msa0530230-mRNA-1:cds;Parent=Msa0530230-mRNA-1 |
| chr4_1 | CDS | 4282058 | 4282281 | 4282058 | ID=Msa0530230-mRNA-1:cds;Parent=Msa0530230-mRNA-1 |
| chr4_1 | CDS | 4282378 | 4282421 | 4282378 | ID=Msa0530230-mRNA-1:cds;Parent=Msa0530230-mRNA-1 |
| chr4_1 | CDS | 4282512 | 4282587 | 4282512 | ID=Msa0530230-mRNA-1:cds;Parent=Msa0530230-mRNA-1 |
| chr4_1 | three_prime_UTR | 4282588 | 4283114 | 4282588 | ID=Msa0530230-mRNA-1:three_prime_utr;Parent=Msa0530230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
