AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0665020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0665020 MtrunA17_Chr8g0378951 38.760 129 68 3 2 123 159 283 1.46e-18 85.5
Msa0665020 MtrunA17_Chr8g0378951 36.364 99 56 3 209 303 176 271 9.29e-13 68.6
Msa0665020 MtrunA17_Chr8g0379131 33.784 74 49 0 47 120 23 96 2.27e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0665020 AT5G19760.1 33.333 129 75 3 2 123 156 280 2.05e-14 73.6

Find 143 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACCTGTTCCAAAGCTTTC+TGG 0.148273 4_4:-4339258 None:intergenic
CAATGCTTACGCTCTTAAAT+AGG 0.163420 4_4:-4336691 None:intergenic
TTGTGTATCTACTTTGTCTT+AGG 0.220339 4_4:-4336111 None:intergenic
TTCTCCACCGTCACAGTTTC+CGG 0.222445 4_4:-4336242 None:intergenic
TTCTCGACTCTGACTGTTCT+AGG 0.222802 4_4:+4339844 Msa0665020:CDS
AGCCGTCCTTGCCAAGAATT+TGG 0.225779 4_4:+4338833 Msa0665020:CDS
AAATGCTCCATCTCTAATAT+TGG 0.235825 4_4:+4338672 Msa0665020:CDS
AGTTACTGTATCCTTGTTCT+TGG 0.263863 4_4:+4339512 Msa0665020:CDS
TTCATTCTTATAACACCTTT+TGG 0.264002 4_4:-4336589 None:intergenic
GACAGCTTGCTCCAAATTCT+TGG 0.267851 4_4:-4338844 None:intergenic
CAGTTGTAAGGTTGAAGTTT+AGG 0.273498 4_4:+4336348 Msa0665020:five_prime_UTR
CTTAGGTGTGTACTTGTCTT+GGG 0.274035 4_4:-4336135 None:intergenic
ACGTTTGGCTCTGTTGTATC+AGG 0.311812 4_4:+4338887 Msa0665020:CDS
TTAGGCATGTGTCCTTTCTA+TGG 0.327558 4_4:+4339108 Msa0665020:CDS
GGCTAATCCACCTTCATAAT+AGG 0.328189 4_4:-4339649 None:intergenic
GTGTTCGAAGGTTGAAGTTT+CGG 0.339850 4_4:+4336277 Msa0665020:five_prime_UTR
AAGAATGAAGTTTAACTTCA+AGG 0.349034 4_4:+4336603 Msa0665020:five_prime_UTR
TGCGTTTAAGAATTTACGTT+TGG 0.349802 4_4:+4338872 Msa0665020:CDS
TTCACAAATTAGGGTGGAAA+TGG 0.356748 4_4:-4340337 None:intergenic
AATGCTCCATCTCTAATATT+GGG 0.357026 4_4:+4338673 Msa0665020:CDS
TCAGACTTGCCAGAAAGCTT+TGG 0.357142 4_4:+4339249 Msa0665020:CDS
AACTCGCCTAATAAATCAAT+GGG 0.364562 4_4:-4340313 None:intergenic
TGTTGCAAGGTCTAAAGTTT+AGG 0.367488 4_4:+4336416 Msa0665020:five_prime_UTR
AGCAGACACCGGCGGCGAAT+TGG 0.368597 4_4:+4336524 Msa0665020:five_prime_UTR
TTTGGAGTTGATCGTGAAAC+TGG 0.383317 4_4:+4337510 Msa0665020:CDS
TCTTAGGTGTGTACTTGTCT+TGG 0.384039 4_4:-4336136 None:intergenic
AATAGTAAGAGTCGTGATAT+TGG 0.390091 4_4:+4337563 Msa0665020:CDS
TTCCATCGACCAAATCTCTT+AGG 0.391685 4_4:-4336152 None:intergenic
GTGAAACTGGTCTCTGGCTG+TGG 0.393696 4_4:+4337523 Msa0665020:CDS
AAAATCTTGAAGCAGTGGTT+TGG 0.408238 4_4:-4338508 None:intergenic
AATGCTTACGCTCTTAAATA+GGG 0.411386 4_4:-4336690 None:intergenic
CTAGTAATTTGTCCCACATC+GGG 0.417155 4_4:+4336639 Msa0665020:five_prime_UTR
CATGCAGTTTCTACCATGCT+TGG 0.418031 4_4:+4339074 Msa0665020:intron
TGATTCCACAGTAGGATAAT+CGG 0.423933 4_4:-4339309 None:intergenic
TAAGGTTGAAGTTTAGGTTT+CGG 0.425645 4_4:+4336354 Msa0665020:five_prime_UTR
AGAAGTGACGGTGGAGAAGG+GGG 0.430719 4_4:+4336309 Msa0665020:five_prime_UTR
GAGAAGTGACGGTGGAGAAG+GGG 0.432480 4_4:+4336308 Msa0665020:five_prime_UTR
CTTCAAGGCAACTGTCGGTC+TGG 0.432958 4_4:+4337614 Msa0665020:CDS
CTGCGAATGAAAGGACAAAC+TGG 0.443436 4_4:-4340003 None:intergenic
CCGATGTGGGACAAATTACT+AGG 0.443869 4_4:-4336638 None:intergenic
TCGGTTATGTGTAGAAATTA+CGG 0.446702 4_4:+4336373 Msa0665020:five_prime_UTR
AAGTACACACCTAAGAGATT+TGG 0.452090 4_4:+4336143 Msa0665020:five_prime_UTR
AAATTCTTGGCAAGGACGGC+TGG 0.452228 4_4:-4338831 None:intergenic
GCTTTCTTCTTCTCTGAAAA+CGG 0.453145 4_4:+4336553 Msa0665020:five_prime_UTR
AGGTTCAGAGAGCAGTTGTA+AGG 0.454379 4_4:+4336336 Msa0665020:five_prime_UTR
TAACATTTGTTTCAGCATCT+GGG 0.457232 4_4:+4339222 Msa0665020:intron
TTGCCAGAAAGCTTTGGAAC+AGG 0.457695 4_4:+4339255 Msa0665020:CDS
TGGGATGCTTCATATCTTCA+AGG 0.458802 4_4:+4337599 Msa0665020:CDS
CTTGGAAATCGTGCTTACTC+TGG 0.461557 4_4:+4338421 Msa0665020:CDS
TTACTATTGCAAGAGCACTA+TGG 0.463813 4_4:-4337548 None:intergenic
CATGATTTCTGCTTATCTTG+TGG 0.463918 4_4:+4339704 Msa0665020:CDS
AGGACACAACTTTATGCCCT+TGG 0.466171 4_4:+4338403 Msa0665020:CDS
TGAGAAGTGACGGTGGAGAA+GGG 0.468186 4_4:+4336307 Msa0665020:five_prime_UTR
ATTGTTACAACCTATTATGA+AGG 0.471594 4_4:+4339639 Msa0665020:CDS
ACTCACATGAACATTCTGAT+TGG 0.472663 4_4:-4339135 None:intergenic
TGTAGAAATTACGGCGGAGA+AGG 0.473353 4_4:+4336382 Msa0665020:five_prime_UTR
AGTGACATGAATGTTATTGT+TGG 0.478697 4_4:+4339361 Msa0665020:CDS
CAACTCGCCTAATAAATCAA+TGG 0.482645 4_4:-4340314 None:intergenic
CACAAGATAAGCAGAAATCA+TGG 0.485648 4_4:-4339703 None:intergenic
CCGTCACAGTTTCCGGAGAA+GGG 0.487690 4_4:-4336235 None:intergenic
ACCGTCACAGTTTCCGGAGA+AGG 0.488765 4_4:-4336236 None:intergenic
TTGGTCGATGGAAGTGGTCG+TGG 0.491751 4_4:+4336162 Msa0665020:five_prime_UTR
GTGAGAAGTGACGGTGGAGA+AGG 0.495147 4_4:+4336306 Msa0665020:five_prime_UTR
TTGATCGTGAAACTGGTCTC+TGG 0.496563 4_4:+4337517 Msa0665020:CDS
TGCTTGGCATTAATACTCTT+AGG 0.497321 4_4:+4339090 Msa0665020:CDS
TTCTCCGGAAACTGTGACGG+TGG 0.498806 4_4:+4336238 Msa0665020:five_prime_UTR
GGGTTGAGAGAGGTGTTCGA+AGG 0.500332 4_4:+4336265 Msa0665020:five_prime_UTR
AGTTTGTAAGAATTCAAAGA+TGG 0.503704 4_4:+4339559 Msa0665020:CDS
CTGATTGGGCCGCCATAGAA+AGG 0.505868 4_4:-4339120 None:intergenic
TATTTCATGAAGCATACTCT+TGG 0.510789 4_4:+4339334 Msa0665020:CDS
TGTTATCATAACCGTGATGA+AGG 0.511198 4_4:+4339968 Msa0665020:CDS
GAAATCTTAGATCAAAGAAA+AGG 0.512937 4_4:+4336662 Msa0665020:five_prime_UTR
CTCACATGAACATTCTGATT+GGG 0.513991 4_4:-4339134 None:intergenic
TTGAAATCCAGTATAAAAGT+TGG 0.517584 4_4:-4339670 None:intergenic
CTCCAAATTCTTGGCAAGGA+CGG 0.521022 4_4:-4338835 None:intergenic
CTCAATTTCACAAATTAGGG+TGG 0.521867 4_4:-4340343 None:intergenic
GGAAACTGTGACGGTGGAGA+AGG 0.522067 4_4:+4336244 Msa0665020:five_prime_UTR
AAGCAGAAATCATGGAAGAA+TGG 0.522671 4_4:-4339695 None:intergenic
GAAATATATGATTCCACAGT+AGG 0.525372 4_4:-4339317 None:intergenic
ATCTAAGATTTCCCCGATGT+GGG 0.526219 4_4:-4336651 None:intergenic
TAGACGTTGACAATTGTCAT+TGG 0.526996 4_4:+4338645 Msa0665020:intron
GAGAATCGTCGTCCGTACAA+TGG 0.528329 4_4:+4339603 Msa0665020:CDS
ACGTTGACAATTGTCATTGG+TGG 0.528965 4_4:+4338648 Msa0665020:CDS
AACAAACCCAATATTAGAGA+TGG 0.530295 4_4:-4338679 None:intergenic
TGAATTCTTACAAACTCAAG+TGG 0.534594 4_4:-4339552 None:intergenic
CGGTGGAGAAGGGTTGAGAG+AGG 0.535986 4_4:+4336255 Msa0665020:five_prime_UTR
AAAAGCATAGAGGCTGTGGC+AGG 0.536224 4_4:+4336463 Msa0665020:five_prime_UTR
AGAGATTTGGTCGATGGAAG+TGG 0.537079 4_4:+4336156 Msa0665020:five_prime_UTR
AAGCTATAACTGCGAATGAA+AGG 0.538668 4_4:-4340012 None:intergenic
TATCTTTGTCATACTAAGAG+TGG 0.540067 4_4:+4339279 Msa0665020:CDS
AAGGCAACTGTCGGTCTGGA+AGG 0.540881 4_4:+4337618 Msa0665020:CDS
GGTGATAGTGAGGGGCCAAA+AGG 0.542470 4_4:+4336574 Msa0665020:five_prime_UTR
CCTAGTAATTTGTCCCACAT+CGG 0.542751 4_4:+4336638 Msa0665020:five_prime_UTR
ATGTGCTTGTTAAACTTCGA+AGG 0.549433 4_4:+4338383 Msa0665020:CDS
TTAGGTGTGTACTTGTCTTG+GGG 0.549801 4_4:-4336134 None:intergenic
CTAAGAACATTCAGTGAAGG+TGG 0.550321 4_4:+4338460 Msa0665020:CDS
CTCTGAAAACGGTGATAGTG+AGG 0.551605 4_4:+4336564 Msa0665020:five_prime_UTR
GATTCAGAGAAACCCTTCTC+CGG 0.552012 4_4:+4336223 Msa0665020:five_prime_UTR
CACCTAAGAGATTTGGTCGA+TGG 0.552539 4_4:+4336150 Msa0665020:five_prime_UTR
GCGGCTTTCCAATTCGCCGC+CGG 0.555924 4_4:-4336532 None:intergenic
TTAACAAGCACATATTCGAC+TGG 0.557662 4_4:-4338373 None:intergenic
GTTACAACCTATTATGAAGG+TGG 0.558877 4_4:+4339642 Msa0665020:CDS
GGACGAGAAGCAGACACCGG+CGG 0.560901 4_4:+4336516 Msa0665020:five_prime_UTR
TGTGAAAAGCATAGAGGCTG+TGG 0.561608 4_4:+4336459 Msa0665020:five_prime_UTR
CAATGAATAAATCCATTGTA+CGG 0.567494 4_4:-4339615 None:intergenic
TCTGAAAACGGTGATAGTGA+GGG 0.567998 4_4:+4336565 Msa0665020:five_prime_UTR
CAGAGTAAGCACGATTTCCA+AGG 0.569528 4_4:-4338420 None:intergenic
GAAGTGACGGTGGAGAAGGG+GGG 0.572067 4_4:+4336310 Msa0665020:five_prime_UTR
GAAACTGTGACGGTGGAGAA+GGG 0.572135 4_4:+4336245 Msa0665020:five_prime_UTR
GATCTAAGATTTCCCCGATG+TGG 0.573417 4_4:-4336652 None:intergenic
AGTGGTCGTGGAGCAGAGCA+TGG 0.575251 4_4:+4336174 Msa0665020:five_prime_UTR
CCCTTCTCCGGAAACTGTGA+CGG 0.575669 4_4:+4336235 Msa0665020:five_prime_UTR
CTTGCTCCAAATTCTTGGCA+AGG 0.576003 4_4:-4338839 None:intergenic
CCACCGTCACTTCTCACACA+TGG 0.577154 4_4:-4336300 None:intergenic
TGAAACTGGTCTCTGGCTGT+GGG 0.581916 4_4:+4337524 Msa0665020:CDS
CGGCCATGTGTGAGAAGTGA+CGG 0.589423 4_4:+4336297 Msa0665020:five_prime_UTR
CGGCGGAGAAGGGTTCAGAC+AGG 0.590503 4_4:+4336393 Msa0665020:five_prime_UTR
GGCATGTGTCCTTTCTATGG+CGG 0.594751 4_4:+4339111 Msa0665020:CDS
GCAAACTAATGCCAAGAACA+AGG 0.596967 4_4:-4339523 None:intergenic
ACGGTTATGATAACAGTGAA+AGG 0.600043 4_4:-4339960 None:intergenic
GGGTTCAGACAGGTGTTGCA+AGG 0.602827 4_4:+4336403 Msa0665020:five_prime_UTR
GTAGAAATTACGGCGGAGAA+GGG 0.605340 4_4:+4336383 Msa0665020:five_prime_UTR
TAGATCGAAGAGCATGTGAA+AGG 0.610588 4_4:+4336495 Msa0665020:five_prime_UTR
CATATCTTCAAGGCAACTGT+CGG 0.613126 4_4:+4337609 Msa0665020:CDS
AAGAGTATTAATGCCAAGCA+TGG 0.616543 4_4:-4339087 None:intergenic
TAGGTGATGTTTGATAGTGA+AGG 0.625431 4_4:+4336435 Msa0665020:five_prime_UTR
TGATTCTCTTTATTTCCATG+AGG 0.630189 4_4:+4336775 Msa0665020:exon
AATTAGCGAATCCTTCATCA+CGG 0.642911 4_4:-4339979 None:intergenic
CTGAAAACGGTGATAGTGAG+GGG 0.644129 4_4:+4336566 Msa0665020:five_prime_UTR
GAAGGTTGTGAAAAGCATAG+AGG 0.648596 4_4:+4336453 Msa0665020:five_prime_UTR
AGAGTAAGCACGATTTCCAA+GGG 0.650254 4_4:-4338419 None:intergenic
CTGCTCCGATTATCCTACTG+TGG 0.655935 4_4:+4339304 Msa0665020:CDS
GCTCTAAGAACATTCAGTGA+AGG 0.667428 4_4:+4338457 Msa0665020:CDS
AAAGCATAGAGGCTGTGGCA+GGG 0.680433 4_4:+4336464 Msa0665020:five_prime_UTR
CTCGCCTAATAAATCAATGG+GGG 0.681089 4_4:-4340311 None:intergenic
AAAGGACGAGAAGCAGACAC+CGG 0.681225 4_4:+4336513 Msa0665020:five_prime_UTR
GGAATCTCAGCATATTACAA+CGG 0.682260 4_4:+4338481 Msa0665020:CDS
TAGTAATTTGTCCCACATCG+GGG 0.692703 4_4:+4336640 Msa0665020:five_prime_UTR
ATGGAGATCAGATCGAAGAG+CGG 0.693343 4_4:+4336193 Msa0665020:five_prime_UTR
GCATAGAGGCTGTGGCAGGG+AGG 0.702083 4_4:+4336467 Msa0665020:five_prime_UTR
ACTCGCCTAATAAATCAATG+GGG 0.708056 4_4:-4340312 None:intergenic
CCATGTGTGAGAAGTGACGG+TGG 0.740722 4_4:+4336300 Msa0665020:five_prime_UTR
GTTATGTGTAGAAATTACGG+CGG 0.767450 4_4:+4336376 Msa0665020:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTATATATATATATAA+TGG - chr4_4:4336829-4336848 None:intergenic 0.0%
!! TATATTTAAAAAAAAAAAAA+AGG - chr4_4:4339750-4339769 None:intergenic 0.0%
!! AAAAAAAATTAAAGTTGTAT+TGG + chr4_4:4338009-4338028 Msa0665020:intron 10.0%
!! AAAAAATAATTCTAAATAGA+TGG + chr4_4:4338930-4338949 Msa0665020:intron 10.0%
!! ACTAAAAATATGAATTTAAA+TGG - chr4_4:4339426-4339445 None:intergenic 10.0%
!! ATTTAAAAAAAAAAAAAAGG+TGG - chr4_4:4339747-4339766 None:intergenic 10.0%
!!! TGATACATTTTATTAATTAG+TGG + chr4_4:4337237-4337256 Msa0665020:intron 15.0%
!!! GATACATTTTATTAATTAGT+GGG + chr4_4:4337238-4337257 Msa0665020:intron 15.0%
!! ACAATAAAAAATTCCATATT+AGG - chr4_4:4337474-4337493 None:intergenic 15.0%
!!! TTATTGTATTATTTAACTTC+AGG + chr4_4:4337487-4337506 Msa0665020:intron 15.0%
!! TAGATATAAGTTAAATGTTA+TGG - chr4_4:4337756-4337775 None:intergenic 15.0%
!! AAATAGAATGAAATAATCAT+TGG + chr4_4:4337883-4337902 Msa0665020:intron 15.0%
!!! CATTTTGAAACAAATATTTT+TGG + chr4_4:4338049-4338068 Msa0665020:intron 15.0%
!!! TTCTTTATATATTTTGCTTA+TGG + chr4_4:4338603-4338622 Msa0665020:intron 15.0%
!!! TTTAAAATTGGGTTTTATAT+CGG + chr4_4:4338701-4338720 Msa0665020:intron 15.0%
!! ATTAAACATTGCTTATTATA+TGG + chr4_4:4339796-4339815 Msa0665020:intron 15.0%
!!! TTTTTTTGTATTGTTTTAGT+TGG + chr4_4:4340230-4340249 Msa0665020:intron 15.0%
!!! CTATTTGCTTTTTTTTTCTA+TGG - chr4_4:4336724-4336743 None:intergenic 20.0%
!!! TATATAATGGAAAACAATTG+AGG - chr4_4:4336816-4336835 None:intergenic 20.0%
!!! ACAAAATCAAACATTTTAGA+AGG - chr4_4:4337802-4337821 None:intergenic 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG - chr4_4:4337931-4337950 None:intergenic 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG - chr4_4:4337932-4337951 None:intergenic 20.0%
!! AAAAATGTAAAGCTAACAAA+AGG - chr4_4:4338177-4338196 None:intergenic 20.0%
!! TAATATTAGAAGTAACAGTA+AGG - chr4_4:4338572-4338591 None:intergenic 20.0%
!!! TATTGGGTTTGTTTTAAAAT+TGG + chr4_4:4338689-4338708 Msa0665020:intron 20.0%
!!! ATTGGGTTTGTTTTAAAATT+GGG + chr4_4:4338690-4338709 Msa0665020:intron 20.0%
!!! CTTTTCTTAATTATCTTTTC+AGG + chr4_4:4338799-4338818 Msa0665020:intron 20.0%
!! TAATAATTGCATTGAGTAAA+TGG + chr4_4:4338993-4339012 Msa0665020:intron 20.0%
!!! TTGGTTTTAGTATAATGTAA+TGG + chr4_4:4339032-4339051 Msa0665020:intron 20.0%
!! AAGACAATCATCAATAATTT+AGG - chr4_4:4339400-4339419 None:intergenic 20.0%
!!! ATTTTTAGTTTAACCTTAGT+TGG + chr4_4:4339437-4339456 Msa0665020:intron 20.0%
!!! TTTTTAGTTTAACCTTAGTT+GGG + chr4_4:4339438-4339457 Msa0665020:intron 20.0%
!!! TCCTTTTTTGAATATATTGT+AGG + chr4_4:4339480-4339499 Msa0665020:intron 20.0%
!! ACCTACAATATATTCAAAAA+AGG - chr4_4:4339484-4339503 None:intergenic 20.0%
!!! ACATTGTTTCTTTTTTATTC+AGG + chr4_4:4339934-4339953 Msa0665020:intron 20.0%
!!! CTTGTTATAAATAGTTTTCT+GGG + chr4_4:4340274-4340293 Msa0665020:CDS 20.0%
!! TTCATTCTTATAACACCTTT+TGG - chr4_4:4336592-4336611 None:intergenic 25.0%
!! AAGAATGAAGTTTAACTTCA+AGG + chr4_4:4336603-4336622 Msa0665020:five_prime_UTR 25.0%
! GAAATCTTAGATCAAAGAAA+AGG + chr4_4:4336662-4336681 Msa0665020:five_prime_UTR 25.0%
!! CTTTCCATAGTTATAGTTTT+GGG + chr4_4:4336885-4336904 Msa0665020:intron 25.0%
! AAAACCCAAAACTATAACTA+TGG - chr4_4:4336892-4336911 None:intergenic 25.0%
!!! ATAGTTATAGTTTTGGGTTT+TGG + chr4_4:4336891-4336910 Msa0665020:intron 25.0%
! ACACCTTCATAAAAATTAGT+TGG + chr4_4:4336996-4337015 Msa0665020:intron 25.0%
!! ACACCAACTAATTTTTATGA+AGG - chr4_4:4337002-4337021 None:intergenic 25.0%
!!! AAACCCTATAGTTTTAATAG+TGG + chr4_4:4337076-4337095 Msa0665020:intron 25.0%
! ACTCCACTATTAAAACTATA+GGG - chr4_4:4337082-4337101 None:intergenic 25.0%
! TACTCCACTATTAAAACTAT+AGG - chr4_4:4337083-4337102 None:intergenic 25.0%
! TAAAATTGACAGTGTATGAA+TGG - chr4_4:4337125-4337144 None:intergenic 25.0%
!! ATTCATACACTGTCAATTTT+AGG + chr4_4:4337124-4337143 Msa0665020:intron 25.0%
! ATAGTGTGATTAAAGAAAAG+GGG - chr4_4:4337451-4337470 None:intergenic 25.0%
! GATAGTGTGATTAAAGAAAA+GGG - chr4_4:4337452-4337471 None:intergenic 25.0%
! TTAATCACACTATCCTAATA+TGG + chr4_4:4337458-4337477 Msa0665020:intron 25.0%
!! GTATTATTTAACTTCAGGTT+TGG + chr4_4:4337492-4337511 Msa0665020:intron 25.0%
!! TATTTCATGTTCCTTTTACA+AGG - chr4_4:4338234-4338253 None:intergenic 25.0%
!! AAGACAAAAGTTAGTCTATT+GGG - chr4_4:4338286-4338305 None:intergenic 25.0%
!! AAAGACAAAAGTTAGTCTAT+TGG - chr4_4:4338287-4338306 None:intergenic 25.0%
!!! TTTTTTTGAATCTCTTGTTC+AGG + chr4_4:4338304-4338323 Msa0665020:intron 25.0%
! AAGAAAACAAAAATACCATG+AGG - chr4_4:4338540-4338559 None:intergenic 25.0%
!!! CAATTATTTTGATCTGTCAT+TGG + chr4_4:4338955-4338974 Msa0665020:intron 25.0%
! CAATGCAATTATTAGCAAAA+TGG - chr4_4:4338987-4339006 None:intergenic 25.0%
! AGTTTGTAAGAATTCAAAGA+TGG + chr4_4:4339559-4339578 Msa0665020:CDS 25.0%
! CAATGAATAAATCCATTGTA+CGG - chr4_4:4339618-4339637 None:intergenic 25.0%
! ATTGTTACAACCTATTATGA+AGG + chr4_4:4339639-4339658 Msa0665020:CDS 25.0%
! TTGAAATCCAGTATAAAAGT+TGG - chr4_4:4339673-4339692 None:intergenic 25.0%
! AAAAAAAAAGGTGGTAATAG+TGG - chr4_4:4339738-4339757 None:intergenic 25.0%
! GCTCATATTAGAAAATTGTT+CGG + chr4_4:4340043-4340062 Msa0665020:intron 25.0%
!!! TGGTTTTGAAATTTGTAGTT+TGG + chr4_4:4340171-4340190 Msa0665020:intron 25.0%
! TGACAAAATCCATATTTGAT+TGG - chr4_4:4340207-4340226 None:intergenic 25.0%
!!! GCTTGTTATAAATAGTTTTC+TGG + chr4_4:4340273-4340292 Msa0665020:CDS 25.0%
TTGTGTATCTACTTTGTCTT+AGG - chr4_4:4336114-4336133 None:intergenic 30.0%
! TAAGGTTGAAGTTTAGGTTT+CGG + chr4_4:4336354-4336373 Msa0665020:five_prime_UTR 30.0%
TCGGTTATGTGTAGAAATTA+CGG + chr4_4:4336373-4336392 Msa0665020:five_prime_UTR 30.0%
AATGCTTACGCTCTTAAATA+GGG - chr4_4:4336693-4336712 None:intergenic 30.0%
! TGATTCTCTTTATTTCCATG+AGG + chr4_4:4336775-4336794 Msa0665020:exon 30.0%
AAATTGGAAAACTAACCTCA+TGG - chr4_4:4336793-4336812 None:intergenic 30.0%
TGGAAAACAATTGAGGAAAT+TGG - chr4_4:4336809-4336828 None:intergenic 30.0%
CCAAAACTATAACTATGGAA+AGG - chr4_4:4336887-4336906 None:intergenic 30.0%
! CCTTTCCATAGTTATAGTTT+TGG + chr4_4:4336884-4336903 Msa0665020:intron 30.0%
AACATTGTGTTTCATACTTC+TGG + chr4_4:4337310-4337329 Msa0665020:intron 30.0%
TAGTGTGATTAAAGAAAAGG+GGG - chr4_4:4337450-4337469 None:intergenic 30.0%
GGATAGTGTGATTAAAGAAA+AGG - chr4_4:4337453-4337472 None:intergenic 30.0%
AATAGTAAGAGTCGTGATAT+TGG + chr4_4:4337563-4337582 Msa0665020:CDS 30.0%
!!! ATATTGGTTTTCTTTCACTG+TGG + chr4_4:4337579-4337598 Msa0665020:CDS 30.0%
!!! TATTGGTTTTCTTTCACTGT+GGG + chr4_4:4337580-4337599 Msa0665020:CDS 30.0%
! CAACTTGTTTGATTGAATCT+TGG + chr4_4:4337730-4337749 Msa0665020:intron 30.0%
!! TTTTAGAAGGTTGCTTACAT+AGG - chr4_4:4337789-4337808 None:intergenic 30.0%
AAATTGTGTGAGAGAAAAGT+TGG + chr4_4:4337970-4337989 Msa0665020:intron 30.0%
TCGCAATGTAAAATAGGATT+TGG - chr4_4:4338138-4338157 None:intergenic 30.0%
AACAAAAATACCATGAGGTA+AGG - chr4_4:4338535-4338554 None:intergenic 30.0%
AAATGCTCCATCTCTAATAT+TGG + chr4_4:4338672-4338691 Msa0665020:CDS 30.0%
AATGCTCCATCTCTAATATT+GGG + chr4_4:4338673-4338692 Msa0665020:CDS 30.0%
AACAAACCCAATATTAGAGA+TGG - chr4_4:4338682-4338701 None:intergenic 30.0%
TGCGTTTAAGAATTTACGTT+TGG + chr4_4:4338872-4338891 Msa0665020:CDS 30.0%
GCAATTATTAGCAAAATGGT+TGG - chr4_4:4338983-4339002 None:intergenic 30.0%
AGTAAATGGTTTGACATTGT+AGG + chr4_4:4339007-4339026 Msa0665020:intron 30.0%
TTAACATTTGTTTCAGCATC+TGG + chr4_4:4339221-4339240 Msa0665020:intron 30.0%
TAACATTTGTTTCAGCATCT+GGG + chr4_4:4339222-4339241 Msa0665020:intron 30.0%
TATCTTTGTCATACTAAGAG+TGG + chr4_4:4339279-4339298 Msa0665020:CDS 30.0%
GAAATATATGATTCCACAGT+AGG - chr4_4:4339320-4339339 None:intergenic 30.0%
TATTTCATGAAGCATACTCT+TGG + chr4_4:4339334-4339353 Msa0665020:CDS 30.0%
AGTGACATGAATGTTATTGT+TGG + chr4_4:4339361-4339380 Msa0665020:CDS 30.0%
TGAATTCTTACAAACTCAAG+TGG - chr4_4:4339555-4339574 None:intergenic 30.0%
CAAATTTCAAAACCAACCAT+TGG - chr4_4:4340166-4340185 None:intergenic 30.0%
ATTTGTAGTTTGGAAACCAA+TGG + chr4_4:4340181-4340200 Msa0665020:intron 30.0%
!!! TTGTTTTAGTTGGCTTTTGA+AGG + chr4_4:4340240-4340259 Msa0665020:intron 30.0%
AATAAATCAATGGGGGTAAA+GGG - chr4_4:4340307-4340326 None:intergenic 30.0%
TAATAAATCAATGGGGGTAA+AGG - chr4_4:4340308-4340327 None:intergenic 30.0%
!! TTTACCCCCATTGATTTATT+AGG + chr4_4:4340307-4340326 Msa0665020:CDS 30.0%
AACTCGCCTAATAAATCAAT+GGG - chr4_4:4340316-4340335 None:intergenic 30.0%
AAGTACACACCTAAGAGATT+TGG + chr4_4:4336143-4336162 Msa0665020:five_prime_UTR 35.0%
CAGTTGTAAGGTTGAAGTTT+AGG + chr4_4:4336348-4336367 Msa0665020:five_prime_UTR 35.0%
GTTATGTGTAGAAATTACGG+CGG + chr4_4:4336376-4336395 Msa0665020:five_prime_UTR 35.0%
! TGTTGCAAGGTCTAAAGTTT+AGG + chr4_4:4336416-4336435 Msa0665020:five_prime_UTR 35.0%
!! TAGGTGATGTTTGATAGTGA+AGG + chr4_4:4336435-4336454 Msa0665020:five_prime_UTR 35.0%
! GTTTTCAGAGAAGAAGAAAG+CGG - chr4_4:4336554-4336573 None:intergenic 35.0%
! GCTTTCTTCTTCTCTGAAAA+CGG + chr4_4:4336553-4336572 Msa0665020:five_prime_UTR 35.0%
CAATGCTTACGCTCTTAAAT+AGG - chr4_4:4336694-4336713 None:intergenic 35.0%
ATTGCTAAAAGACACCTTCA+CGG - chr4_4:4336926-4336945 None:intergenic 35.0%
!! AAGTTGATAATCACACCTTG+AGG - chr4_4:4336954-4336973 None:intergenic 35.0%
AATTGACAGTGTATGAATGG+TGG - chr4_4:4337122-4337141 None:intergenic 35.0%
!! TTACTATTGCAAGAGCACTA+TGG - chr4_4:4337551-4337570 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr4_4:4338039-4338058 None:intergenic 35.0%
!! TTCAAAATGAGTGTCGCTTT+AGG + chr4_4:4337841-4337860 Msa0665020:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr4_4:4338039-4338058 Msa0665020:intron 35.0%
CATTGTTGAGTTAAACATGC+AGG - chr4_4:4338200-4338219 None:intergenic 35.0%
ACCAAGTGTTACCTTGTAAA+AGG + chr4_4:4338220-4338239 Msa0665020:intron 35.0%
! TCCTTTTACAAGGTAACACT+TGG - chr4_4:4338224-4338243 None:intergenic 35.0%
! TTTTGAATCTCTTGTTCAGG+TGG + chr4_4:4338307-4338326 Msa0665020:intron 35.0%
TTAACAAGCACATATTCGAC+TGG - chr4_4:4338376-4338395 None:intergenic 35.0%
! ATGTGCTTGTTAAACTTCGA+AGG + chr4_4:4338383-4338402 Msa0665020:CDS 35.0%
GGAATCTCAGCATATTACAA+CGG + chr4_4:4338481-4338500 Msa0665020:CDS 35.0%
AAAATCTTGAAGCAGTGGTT+TGG - chr4_4:4338511-4338530 None:intergenic 35.0%
AAGGAAAAATCTTGAAGCAG+TGG - chr4_4:4338516-4338535 None:intergenic 35.0%
! CAAGATTTTTCCTTACCTCA+TGG + chr4_4:4338522-4338541 Msa0665020:CDS 35.0%
TAGACGTTGACAATTGTCAT+TGG + chr4_4:4338645-4338664 Msa0665020:intron 35.0%
CAACAAAAAGAAAGCCATCA+GGG - chr4_4:4338737-4338756 None:intergenic 35.0%
ACAACAAAAAGAAAGCCATC+AGG - chr4_4:4338738-4338757 None:intergenic 35.0%
! TGGTTTGACATTGTAGGTTT+TGG + chr4_4:4339013-4339032 Msa0665020:intron 35.0%
!! AAGAGTATTAATGCCAAGCA+TGG - chr4_4:4339090-4339109 None:intergenic 35.0%
TGCTTGGCATTAATACTCTT+AGG + chr4_4:4339090-4339109 Msa0665020:CDS 35.0%
CTCACATGAACATTCTGATT+GGG - chr4_4:4339137-4339156 None:intergenic 35.0%
ACTCACATGAACATTCTGAT+TGG - chr4_4:4339138-4339157 None:intergenic 35.0%
TGATTCCACAGTAGGATAAT+CGG - chr4_4:4339312-4339331 None:intergenic 35.0%
!! AACCTTAGTTGGGTTTTATC+AGG + chr4_4:4339448-4339467 Msa0665020:intron 35.0%
AACCTGATAAAACCCAACTA+AGG - chr4_4:4339453-4339472 None:intergenic 35.0%
AGTTACTGTATCCTTGTTCT+TGG + chr4_4:4339512-4339531 Msa0665020:CDS 35.0%
GTTACAACCTATTATGAAGG+TGG + chr4_4:4339642-4339661 Msa0665020:CDS 35.0%
!!! GGATTAGCCAACTTTTATAC+TGG + chr4_4:4339663-4339682 Msa0665020:CDS 35.0%
AAGCAGAAATCATGGAAGAA+TGG - chr4_4:4339698-4339717 None:intergenic 35.0%
CACAAGATAAGCAGAAATCA+TGG - chr4_4:4339706-4339725 None:intergenic 35.0%
CATGATTTCTGCTTATCTTG+TGG + chr4_4:4339704-4339723 Msa0665020:CDS 35.0%
ACGGTTATGATAACAGTGAA+AGG - chr4_4:4339963-4339982 None:intergenic 35.0%
TGTTATCATAACCGTGATGA+AGG + chr4_4:4339968-4339987 Msa0665020:CDS 35.0%
AATTAGCGAATCCTTCATCA+CGG - chr4_4:4339982-4340001 None:intergenic 35.0%
AAGCTATAACTGCGAATGAA+AGG - chr4_4:4340015-4340034 None:intergenic 35.0%
AATTGTATGATATCTCTGCC+TGG + chr4_4:4340068-4340087 Msa0665020:intron 35.0%
TGCTACAAAATTCGGAGTAT+TGG - chr4_4:4340125-4340144 None:intergenic 35.0%
! TCCGAATTTTGTAGCATGTT+TGG + chr4_4:4340129-4340148 Msa0665020:intron 35.0%
CCCAAACATGCTACAAAATT+CGG - chr4_4:4340133-4340152 None:intergenic 35.0%
! CCGAATTTTGTAGCATGTTT+GGG + chr4_4:4340130-4340149 Msa0665020:intron 35.0%
TTTGGGCAATCAAAAACCAA+TGG + chr4_4:4340147-4340166 Msa0665020:intron 35.0%
AACCAATGGCCAATCAAATA+TGG + chr4_4:4340195-4340214 Msa0665020:intron 35.0%
! ATCCATATTTGATTGGCCAT+TGG - chr4_4:4340200-4340219 None:intergenic 35.0%
ACTCGCCTAATAAATCAATG+GGG - chr4_4:4340315-4340334 None:intergenic 35.0%
CAACTCGCCTAATAAATCAA+TGG - chr4_4:4340317-4340336 None:intergenic 35.0%
TTAGGTGTGTACTTGTCTTG+GGG - chr4_4:4336137-4336156 None:intergenic 40.0%
CTTAGGTGTGTACTTGTCTT+GGG - chr4_4:4336138-4336157 None:intergenic 40.0%
TCTTAGGTGTGTACTTGTCT+TGG - chr4_4:4336139-4336158 None:intergenic 40.0%
TTCCATCGACCAAATCTCTT+AGG - chr4_4:4336155-4336174 None:intergenic 40.0%
GTGTTCGAAGGTTGAAGTTT+CGG + chr4_4:4336277-4336296 Msa0665020:five_prime_UTR 40.0%
! GAAGGTTGTGAAAAGCATAG+AGG + chr4_4:4336453-4336472 Msa0665020:five_prime_UTR 40.0%
! TAGATCGAAGAGCATGTGAA+AGG + chr4_4:4336495-4336514 Msa0665020:five_prime_UTR 40.0%
! TCTGAAAACGGTGATAGTGA+GGG + chr4_4:4336565-4336584 Msa0665020:five_prime_UTR 40.0%
! CCTAGTAATTTGTCCCACAT+CGG + chr4_4:4336638-4336657 Msa0665020:five_prime_UTR 40.0%
! CTAGTAATTTGTCCCACATC+GGG + chr4_4:4336639-4336658 Msa0665020:five_prime_UTR 40.0%
! TAGTAATTTGTCCCACATCG+GGG + chr4_4:4336640-4336659 Msa0665020:five_prime_UTR 40.0%
! ATCTAAGATTTCCCCGATGT+GGG - chr4_4:4336654-4336673 None:intergenic 40.0%
! TTTTAGCAATCCACACCTCA+AGG + chr4_4:4336936-4336955 Msa0665020:intron 40.0%
AAGATTCCACACCTTCATCA+AGG + chr4_4:4337040-4337059 Msa0665020:intron 40.0%
AGATTCCACACCTTCATCAA+GGG + chr4_4:4337041-4337060 Msa0665020:intron 40.0%
ACGCTAGAACAACGATCAAA+AGG - chr4_4:4337340-4337359 None:intergenic 40.0%
GACGCTAAGACAATAGTGAT+TGG - chr4_4:4337407-4337426 None:intergenic 40.0%
ATTGTCTTAGCGTCTGAGTA+TGG + chr4_4:4337413-4337432 Msa0665020:intron 40.0%
TTGTCTTAGCGTCTGAGTAT+GGG + chr4_4:4337414-4337433 Msa0665020:intron 40.0%
! TTTGGAGTTGATCGTGAAAC+TGG + chr4_4:4337510-4337529 Msa0665020:CDS 40.0%
TGGGATGCTTCATATCTTCA+AGG + chr4_4:4337599-4337618 Msa0665020:CDS 40.0%
CATATCTTCAAGGCAACTGT+CGG + chr4_4:4337609-4337628 Msa0665020:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr4_4:4338079-4338098 None:intergenic 40.0%
TGTGAGAGAAAAGTTGGAGA+GGG + chr4_4:4337976-4337995 Msa0665020:intron 40.0%
AAAGTTGGAGAGGGTTAAGT+TGG + chr4_4:4337985-4338004 Msa0665020:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr4_4:4338079-4338098 Msa0665020:intron 40.0%
GGCTCATCGCAATGTAAAAT+AGG - chr4_4:4338144-4338163 None:intergenic 40.0%
CTAACAAAAGGAGAGACAAC+AGG - chr4_4:4338165-4338184 None:intergenic 40.0%
! TATTGGGTATGAAGAGTGTG+TGG - chr4_4:4338270-4338289 None:intergenic 40.0%
AGAGTAAGCACGATTTCCAA+GGG - chr4_4:4338422-4338441 None:intergenic 40.0%
!! GCTCTAAGAACATTCAGTGA+AGG + chr4_4:4338457-4338476 Msa0665020:CDS 40.0%
CTAAGAACATTCAGTGAAGG+TGG + chr4_4:4338460-4338479 Msa0665020:CDS 40.0%
ACGTTGACAATTGTCATTGG+TGG + chr4_4:4338648-4338667 Msa0665020:CDS 40.0%
AAAAAGAAAGCCATCAGGGA+GGG - chr4_4:4338733-4338752 None:intergenic 40.0%
TTAGGCATGTGTCCTTTCTA+TGG + chr4_4:4339108-4339127 Msa0665020:CDS 40.0%
TAACCTGTTCCAAAGCTTTC+TGG - chr4_4:4339261-4339280 None:intergenic 40.0%
GCAAACTAATGCCAAGAACA+AGG - chr4_4:4339526-4339545 None:intergenic 40.0%
GGCTAATCCACCTTCATAAT+AGG - chr4_4:4339652-4339671 None:intergenic 40.0%
GTATCTGACAATGGCTAAGT+TGG + chr4_4:4339899-4339918 Msa0665020:intron 40.0%
GACAAGAGTTAAAATGCTCC+AGG - chr4_4:4340089-4340108 None:intergenic 40.0%
GGCAATCAAAAACCAATGGT+TGG + chr4_4:4340151-4340170 Msa0665020:intron 40.0%
CTCGCCTAATAAATCAATGG+GGG - chr4_4:4340314-4340333 None:intergenic 40.0%
! CACCTAAGAGATTTGGTCGA+TGG + chr4_4:4336150-4336169 Msa0665020:five_prime_UTR 45.0%
! AGAGATTTGGTCGATGGAAG+TGG + chr4_4:4336156-4336175 Msa0665020:five_prime_UTR 45.0%
ATGGAGATCAGATCGAAGAG+CGG + chr4_4:4336193-4336212 Msa0665020:five_prime_UTR 45.0%
GATTCAGAGAAACCCTTCTC+CGG + chr4_4:4336223-4336242 Msa0665020:five_prime_UTR 45.0%
AGGTTCAGAGAGCAGTTGTA+AGG + chr4_4:4336336-4336355 Msa0665020:five_prime_UTR 45.0%
TGTAGAAATTACGGCGGAGA+AGG + chr4_4:4336382-4336401 Msa0665020:five_prime_UTR 45.0%
GTAGAAATTACGGCGGAGAA+GGG + chr4_4:4336383-4336402 Msa0665020:five_prime_UTR 45.0%
! TGTGAAAAGCATAGAGGCTG+TGG + chr4_4:4336459-4336478 Msa0665020:five_prime_UTR 45.0%
! CTCTGAAAACGGTGATAGTG+AGG + chr4_4:4336564-4336583 Msa0665020:five_prime_UTR 45.0%
! CTGAAAACGGTGATAGTGAG+GGG + chr4_4:4336566-4336585 Msa0665020:five_prime_UTR 45.0%
CCGATGTGGGACAAATTACT+AGG - chr4_4:4336641-4336660 None:intergenic 45.0%
! GATCTAAGATTTCCCCGATG+TGG - chr4_4:4336655-4336674 None:intergenic 45.0%
TTTGGTAGAAGACACCGTGA+AGG + chr4_4:4336909-4336928 Msa0665020:intron 45.0%
GATAATCACACCTTGAGGTG+TGG - chr4_4:4336949-4336968 None:intergenic 45.0%
CTAGAAGACACCCTTGATGA+AGG - chr4_4:4337054-4337073 None:intergenic 45.0%
! TTGATCGTGAAACTGGTCTC+TGG + chr4_4:4337517-4337536 Msa0665020:CDS 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr4_4:4338078-4338097 None:intergenic 45.0%
GTGTGAGAGAAAAGTTGGAG+AGG + chr4_4:4337975-4337994 Msa0665020:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr4_4:4338078-4338097 Msa0665020:intron 45.0%
AGGACACAACTTTATGCCCT+TGG + chr4_4:4338403-4338422 Msa0665020:CDS 45.0%
CAGAGTAAGCACGATTTCCA+AGG - chr4_4:4338423-4338442 None:intergenic 45.0%
CTTGGAAATCGTGCTTACTC+TGG + chr4_4:4338421-4338440 Msa0665020:CDS 45.0%
AAAAGAAAGCCATCAGGGAG+GGG - chr4_4:4338732-4338751 None:intergenic 45.0%
CAAAAAGAAAGCCATCAGGG+AGG - chr4_4:4338734-4338753 None:intergenic 45.0%
CTCCAAATTCTTGGCAAGGA+CGG - chr4_4:4338838-4338857 None:intergenic 45.0%
CTTGCTCCAAATTCTTGGCA+AGG - chr4_4:4338842-4338861 None:intergenic 45.0%
! GACAGCTTGCTCCAAATTCT+TGG - chr4_4:4338847-4338866 None:intergenic 45.0%
!! ACGTTTGGCTCTGTTGTATC+AGG + chr4_4:4338887-4338906 Msa0665020:CDS 45.0%
CATGCAGTTTCTACCATGCT+TGG + chr4_4:4339074-4339093 Msa0665020:intron 45.0%
TCAGACTTGCCAGAAAGCTT+TGG + chr4_4:4339249-4339268 Msa0665020:CDS 45.0%
!! TTGCCAGAAAGCTTTGGAAC+AGG + chr4_4:4339255-4339274 Msa0665020:CDS 45.0%
GCTTATTATATGGCAGCTGC+TGG + chr4_4:4339806-4339825 Msa0665020:intron 45.0%
TTCTCGACTCTGACTGTTCT+AGG + chr4_4:4339844-4339863 Msa0665020:CDS 45.0%
CAGATACGAAAGCCACACAA+GGG - chr4_4:4339886-4339905 None:intergenic 45.0%
TCAGATACGAAAGCCACACA+AGG - chr4_4:4339887-4339906 None:intergenic 45.0%
GTGGCTTTCGTATCTGACAA+TGG + chr4_4:4339890-4339909 Msa0665020:intron 45.0%
CTGCGAATGAAAGGACAAAC+TGG - chr4_4:4340006-4340025 None:intergenic 45.0%
!!! TTTTTTTTAAATATATTTGA+TGG + chr4_4:4339755-4339774 Msa0665020:intron 5.0%
TTCTCCACCGTCACAGTTTC+CGG - chr4_4:4336245-4336264 None:intergenic 50.0%
GAAACTGTGACGGTGGAGAA+GGG + chr4_4:4336245-4336264 Msa0665020:five_prime_UTR 50.0%
TGAGAAGTGACGGTGGAGAA+GGG + chr4_4:4336307-4336326 Msa0665020:five_prime_UTR 50.0%
! AAAAGCATAGAGGCTGTGGC+AGG + chr4_4:4336463-4336482 Msa0665020:five_prime_UTR 50.0%
AAAGCATAGAGGCTGTGGCA+GGG + chr4_4:4336464-4336483 Msa0665020:five_prime_UTR 50.0%
AAAGGACGAGAAGCAGACAC+CGG + chr4_4:4336513-4336532 Msa0665020:five_prime_UTR 50.0%
AGACACCCTTGATGAAGGTG+TGG - chr4_4:4337049-4337068 None:intergenic 50.0%
! TGAAACTGGTCTCTGGCTGT+GGG + chr4_4:4337524-4337543 Msa0665020:CDS 50.0%
AAAGAAAGCCATCAGGGAGG+GGG - chr4_4:4338731-4338750 None:intergenic 50.0%
AAATTCTTGGCAAGGACGGC+TGG - chr4_4:4338834-4338853 None:intergenic 50.0%
AGCCGTCCTTGCCAAGAATT+TGG + chr4_4:4338833-4338852 Msa0665020:CDS 50.0%
GGCATGTGTCCTTTCTATGG+CGG + chr4_4:4339111-4339130 Msa0665020:CDS 50.0%
CTGCTCCGATTATCCTACTG+TGG + chr4_4:4339304-4339323 Msa0665020:CDS 50.0%
GAGAATCGTCGTCCGTACAA+TGG + chr4_4:4339603-4339622 Msa0665020:CDS 50.0%
TAAACGCTCCTTCCCTTGTG+TGG + chr4_4:4339871-4339890 Msa0665020:intron 50.0%
TACGAAAGCCACACAAGGGA+AGG - chr4_4:4339882-4339901 None:intergenic 50.0%
TTGGTCGATGGAAGTGGTCG+TGG + chr4_4:4336162-4336181 Msa0665020:five_prime_UTR 55.0%
CCGTCACAGTTTCCGGAGAA+GGG - chr4_4:4336238-4336257 None:intergenic 55.0%
CCCTTCTCCGGAAACTGTGA+CGG + chr4_4:4336235-4336254 Msa0665020:five_prime_UTR 55.0%
ACCGTCACAGTTTCCGGAGA+AGG - chr4_4:4336239-4336258 None:intergenic 55.0%
TTCTCCGGAAACTGTGACGG+TGG + chr4_4:4336238-4336257 Msa0665020:five_prime_UTR 55.0%
GGAAACTGTGACGGTGGAGA+AGG + chr4_4:4336244-4336263 Msa0665020:five_prime_UTR 55.0%
!! GGGTTGAGAGAGGTGTTCGA+AGG + chr4_4:4336265-4336284 Msa0665020:five_prime_UTR 55.0%
CGGCCATGTGTGAGAAGTGA+CGG + chr4_4:4336297-4336316 Msa0665020:five_prime_UTR 55.0%
CCACCGTCACTTCTCACACA+TGG - chr4_4:4336303-4336322 None:intergenic 55.0%
CCATGTGTGAGAAGTGACGG+TGG + chr4_4:4336300-4336319 Msa0665020:five_prime_UTR 55.0%
GTGAGAAGTGACGGTGGAGA+AGG + chr4_4:4336306-4336325 Msa0665020:five_prime_UTR 55.0%
GAGAAGTGACGGTGGAGAAG+GGG + chr4_4:4336308-4336327 Msa0665020:five_prime_UTR 55.0%
AGAAGTGACGGTGGAGAAGG+GGG + chr4_4:4336309-4336328 Msa0665020:five_prime_UTR 55.0%
! GGGTTCAGACAGGTGTTGCA+AGG + chr4_4:4336403-4336422 Msa0665020:five_prime_UTR 55.0%
! GGTGATAGTGAGGGGCCAAA+AGG + chr4_4:4336574-4336593 Msa0665020:five_prime_UTR 55.0%
! GTGAAACTGGTCTCTGGCTG+TGG + chr4_4:4337523-4337542 Msa0665020:CDS 55.0%
CTTCAAGGCAACTGTCGGTC+TGG + chr4_4:4337614-4337633 Msa0665020:CDS 55.0%
AAGGCAACTGTCGGTCTGGA+AGG + chr4_4:4337618-4337637 Msa0665020:CDS 55.0%
AAGAAAGCCATCAGGGAGGG+GGG - chr4_4:4338730-4338749 None:intergenic 55.0%
CTGATTGGGCCGCCATAGAA+AGG - chr4_4:4339123-4339142 None:intergenic 55.0%
AGTGGTCGTGGAGCAGAGCA+TGG + chr4_4:4336174-4336193 Msa0665020:five_prime_UTR 60.0%
CGGTGGAGAAGGGTTGAGAG+AGG + chr4_4:4336255-4336274 Msa0665020:five_prime_UTR 60.0%
GAAGTGACGGTGGAGAAGGG+GGG + chr4_4:4336310-4336329 Msa0665020:five_prime_UTR 60.0%
ACGGTGGAGAAGGGGGGAGA+AGG + chr4_4:4336316-4336335 Msa0665020:five_prime_UTR 65.0%
CGGCGGAGAAGGGTTCAGAC+AGG + chr4_4:4336393-4336412 Msa0665020:five_prime_UTR 65.0%
GCATAGAGGCTGTGGCAGGG+AGG + chr4_4:4336467-4336486 Msa0665020:five_prime_UTR 65.0%
GGACGAGAAGCAGACACCGG+CGG + chr4_4:4336516-4336535 Msa0665020:five_prime_UTR 65.0%
AGCAGACACCGGCGGCGAAT+TGG + chr4_4:4336524-4336543 Msa0665020:five_prime_UTR 65.0%
GCGGCTTTCCAATTCGCCGC+CGG - chr4_4:4336535-4336554 None:intergenic 65.0%
TCGGCATCCCCCCTCCCTGA+TGG + chr4_4:4338720-4338739 Msa0665020:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 4336105 4340351 4336105 ID=Msa0665020;Name=Msa0665020
chr4_4 mRNA 4336105 4340351 4336105 ID=Msa0665020-mRNA-1;Parent=Msa0665020;Name=Msa0665020-mRNA-1;_AED=0.13;_eAED=0.16;_QI=687|0.5|0.63|1|0.7|0.63|11|0|386
chr4_4 exon 4336105 4336796 4336105 ID=Msa0665020-mRNA-1:exon:1437;Parent=Msa0665020-mRNA-1
chr4_4 exon 4337509 4337654 4337509 ID=Msa0665020-mRNA-1:exon:1438;Parent=Msa0665020-mRNA-1
chr4_4 exon 4338326 4338543 4338326 ID=Msa0665020-mRNA-1:exon:1439;Parent=Msa0665020-mRNA-1
chr4_4 exon 4338648 4338694 4338648 ID=Msa0665020-mRNA-1:exon:1440;Parent=Msa0665020-mRNA-1
chr4_4 exon 4338821 4338908 4338821 ID=Msa0665020-mRNA-1:exon:1441;Parent=Msa0665020-mRNA-1
chr4_4 exon 4339081 4339151 4339081 ID=Msa0665020-mRNA-1:exon:1442;Parent=Msa0665020-mRNA-1
chr4_4 exon 4339237 4339382 4339237 ID=Msa0665020-mRNA-1:exon:1443;Parent=Msa0665020-mRNA-1
chr4_4 exon 4339502 4339725 4339502 ID=Msa0665020-mRNA-1:exon:1444;Parent=Msa0665020-mRNA-1
chr4_4 exon 4339822 4339865 4339822 ID=Msa0665020-mRNA-1:exon:1445;Parent=Msa0665020-mRNA-1
chr4_4 exon 4339956 4340024 4339956 ID=Msa0665020-mRNA-1:exon:1446;Parent=Msa0665020-mRNA-1
chr4_4 exon 4340249 4340351 4340249 ID=Msa0665020-mRNA-1:exon:1447;Parent=Msa0665020-mRNA-1
chr4_4 five_prime_UTR 4336105 4336791 4336105 ID=Msa0665020-mRNA-1:five_prime_utr;Parent=Msa0665020-mRNA-1
chr4_4 CDS 4336792 4336796 4336792 ID=Msa0665020-mRNA-1:cds;Parent=Msa0665020-mRNA-1
chr4_4 CDS 4337509 4337654 4337509 ID=Msa0665020-mRNA-1:cds;Parent=Msa0665020-mRNA-1
chr4_4 CDS 4338326 4338543 4338326 ID=Msa0665020-mRNA-1:cds;Parent=Msa0665020-mRNA-1
chr4_4 CDS 4338648 4338694 4338648 ID=Msa0665020-mRNA-1:cds;Parent=Msa0665020-mRNA-1
chr4_4 CDS 4338821 4338908 4338821 ID=Msa0665020-mRNA-1:cds;Parent=Msa0665020-mRNA-1
chr4_4 CDS 4339081 4339151 4339081 ID=Msa0665020-mRNA-1:cds;Parent=Msa0665020-mRNA-1
chr4_4 CDS 4339237 4339382 4339237 ID=Msa0665020-mRNA-1:cds;Parent=Msa0665020-mRNA-1
chr4_4 CDS 4339502 4339725 4339502 ID=Msa0665020-mRNA-1:cds;Parent=Msa0665020-mRNA-1
chr4_4 CDS 4339822 4339865 4339822 ID=Msa0665020-mRNA-1:cds;Parent=Msa0665020-mRNA-1
chr4_4 CDS 4339956 4340024 4339956 ID=Msa0665020-mRNA-1:cds;Parent=Msa0665020-mRNA-1
chr4_4 CDS 4340249 4340351 4340249 ID=Msa0665020-mRNA-1:cds;Parent=Msa0665020-mRNA-1
Gene Sequence

>Msa0665020

ATGAGGTTTGGAGTTGATCGTGAAACTGGTCTCTGGCTGTGGGTCCATAGTGCTCTTGCAATAGTAAGAGTCGTGATATTGGTTTTCTTTCACTGTGGGATGCTTCATATCTTCAAGGCAACTGTCGGTCTGGAAGGAATGTACACTGTGCGTGGTGTAGCTTTTGTGTCTGTACTTGTCATGCTAGCTTGCGTTTTTCCAGTCGAATATGTGCTTGTTAAACTTCGAAGGACACAACTTTATGCCCTTGGAAATCGTGCTTACTCTGGATATCTCAATTGTGCTCTAAGAACATTCAGTGAAGGTGGAATCTCAGCATATTACAACGGTTTTCCAAACCACTGCTTCAAGATTTTTCCTTACCTCATGACGTTGACAATTGTCATTGGTGGTAAATGCTCCATCTCTAATATTGGGTGCAATCTGCCAGCCGTCCTTGCCAAGAATTTGGAGCAAGCTGTCATCTCTGCGTTTAAGAATTTACGTTTGGCTCTGTTGTATCAGTTTCTACCATGCTTGGCATTAATACTCTTAGGCATGTGTCCTTTCTATGGCGGCCCAATCAGAATGTTCATCATCTGGGCTCTTCAGACTTGCCAGAAAGCTTTGGAACAGGTTATCTTTGTCATACTAAGAGTGGTTCTGCTCCGATTATCCTACTGTGGAATCATATATTTCATGAAGCATACTCTTGGTCTAAGTGACATGAATGTTATTGTTGGTGCAATTGCAGTTACTGTATCCTTGTTCTTGGCATTAGTTTGCATTTTTCCACTTGAGTTTGTAAGAATTCAAAGATGGAATGTGCAAACAAATGAGTCAGAGAATCGTCGTCCGTACAATGGATTTATTCATTGCATTGTTACAACCTATTATGAAGGTGGATTAGCCAACTTTTATACTGGATTTCAAGACCATTCTTCCATGATTTCTGCTTATCTTGTGCTGCTGGCTATATTGATCTTGTTTCTCGACTCTGACTGTTCTAGGTCTCCTTTCACTGTTATCATAACCGTGATGAAGGATTCGCTAATTTCCAGTTTGTCCTTTCATTCGCATTGGCTTTTGAAGGTCTATTGCAAGCTTGTTATAAATAGTTTTCTGGGTCAAATTCCCTTTACCCCCATTGATTTATTAGGCGAGTTGCCATTTCCACCCTAA
Protein sequence

>Msa0665020

MRFGVDRETGLWLWVHSALAIVRVVILVFFHCGMLHIFKATVGLEGMYTVRGVAFVSVLVMLACVFPVEYVLVKLRRTQLYALGNRAYSGYLNCALRTFSEGGISAYYNGFPNHCFKIFPYLMTLTIVIGGKCSISNIGCNLPAVLAKNLEQAVISAFKNLRLALLYQFLPCLALILLGMCPFYGGPIRMFIIWALQTCQKALEQVIFVILRVVLLRLSYCGIIYFMKHTLGLSDMNVIVGAIAVTVSLFLALVCIFPLEFVRIQRWNVQTNESENRRPYNGFIHCIVTTYYEGGLANFYTGFQDHSSMISAYLVLLAILILFLDSDCSRSPFTVIITVMKDSLISSLSFHSHWLLKVYCKLVINSFLGQIPFTPIDLLGELPFPP*