Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530350 | XP_003604375.2 | 96.701 | 394 | 11 | 1 | 1 | 392 | 1 | 394 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530350 | sp|Q949X0|ADS3_ARATH | 66.292 | 356 | 118 | 2 | 33 | 387 | 17 | 371 | 2.92e-174 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530350 | G7JGX9 | 96.701 | 394 | 11 | 1 | 1 | 392 | 1 | 394 | 0.0 | 788 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0530350 | Msa1173370 | 0.946097 | 8.829809e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530350 | MtrunA17_Chr4g0003241 | 96.701 | 394 | 11 | 1 | 1 | 392 | 1 | 394 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530350 | AT3G15850.1 | 66.292 | 356 | 118 | 2 | 33 | 387 | 17 | 371 | 2.97e-175 | 493 |
| Msa0530350 | AT1G06080.1 | 60.274 | 292 | 115 | 1 | 93 | 384 | 13 | 303 | 4.62e-136 | 391 |
| Msa0530350 | AT3G15870.1 | 52.235 | 358 | 161 | 4 | 33 | 384 | 7 | 360 | 2.59e-131 | 381 |
| Msa0530350 | AT1G06100.1 | 59.091 | 286 | 116 | 1 | 101 | 386 | 15 | 299 | 1.52e-126 | 367 |
| Msa0530350 | AT2G31360.1 | 56.338 | 284 | 123 | 1 | 101 | 384 | 23 | 305 | 8.18e-126 | 365 |
| Msa0530350 | AT2G31360.2 | 56.338 | 284 | 123 | 1 | 101 | 384 | 23 | 305 | 8.18e-126 | 365 |
| Msa0530350 | AT1G06120.1 | 57.951 | 283 | 118 | 1 | 102 | 384 | 16 | 297 | 3.11e-123 | 358 |
| Msa0530350 | AT1G06090.1 | 58.657 | 283 | 116 | 1 | 102 | 384 | 16 | 297 | 7.52e-123 | 357 |
| Msa0530350 | AT1G06350.1 | 56.446 | 287 | 124 | 1 | 98 | 384 | 13 | 298 | 1.57e-116 | 341 |
| Msa0530350 | AT1G06360.2 | 52.038 | 319 | 146 | 2 | 68 | 386 | 4 | 315 | 1.19e-115 | 340 |
| Msa0530350 | AT1G06360.1 | 56.491 | 285 | 123 | 1 | 102 | 386 | 16 | 299 | 6.59e-115 | 337 |
| Msa0530350 | AT1G06080.2 | 58.049 | 205 | 81 | 2 | 83 | 287 | 7 | 206 | 5.45e-83 | 253 |
Find 100 sgRNAs with CRISPR-Local
Find 339 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGTGGATTAAAATTAAA+AGG | 0.130162 | 4_1:-4377545 | None:intergenic |
| CTCTATCTTGTTTCACAAAA+AGG | 0.171911 | 4_1:+4377305 | Msa0530350:five_prime_UTR |
| AAGAAATATTCAAGCCATTT+AGG | 0.186946 | 4_1:-4377884 | None:intergenic |
| GTTGAAGTTACACACTTTAA+TGG | 0.220570 | 4_1:-4377489 | None:intergenic |
| GTCAAATTTCTTCAAGCTAT+TGG | 0.226600 | 4_1:+4379321 | Msa0530350:CDS |
| TTGTGGAGTTCTTGCTCTTC+AGG | 0.229228 | 4_1:+4377913 | Msa0530350:CDS |
| GTGGCACTTTATGTTGTTAC+TGG | 0.230408 | 4_1:+4377803 | Msa0530350:CDS |
| TGGATTTCCTTTCCTAGTTT+GGG | 0.239391 | 4_1:+4378725 | Msa0530350:CDS |
| GTGGATTTCCTTTCCTAGTT+TGG | 0.240539 | 4_1:+4378724 | Msa0530350:CDS |
| TAACTCAGCTTGCCATGTTT+GGG | 0.241120 | 4_1:+4378975 | Msa0530350:CDS |
| TTCAATGACACTTCTTCTTC+TGG | 0.248991 | 4_1:-4377611 | None:intergenic |
| ATAGTCCAATTGAAGGATTT+TGG | 0.249494 | 4_1:+4378307 | Msa0530350:CDS |
| AAGATTTAAAATGGACCTAT+TGG | 0.251050 | 4_1:-4377441 | None:intergenic |
| GAATGGCCCAAGATTTAAAA+TGG | 0.268261 | 4_1:-4377450 | None:intergenic |
| TTAACTCAGCTTGCCATGTT+TGG | 0.273402 | 4_1:+4378974 | Msa0530350:CDS |
| GCTGGATTTGACTATGTATA+TGG | 0.279266 | 4_1:+4379580 | Msa0530350:three_prime_UTR |
| CATGGTGCATCCATTTGCTT+TGG | 0.292181 | 4_1:+4378680 | Msa0530350:CDS |
| AAATGGAATTCTTTAGATAT+TGG | 0.292659 | 4_1:+4377698 | Msa0530350:CDS |
| TGCAGGGTGTGAGGGTTGTT+TGG | 0.293341 | 4_1:+4378929 | Msa0530350:intron |
| GCAGGGTGTGAGGGTTGTTT+GGG | 0.310436 | 4_1:+4378930 | Msa0530350:intron |
| GAAGGGTTGTGAAGTGATTA+TGG | 0.333509 | 4_1:-4377400 | None:intergenic |
| GGGACTTATCTAGAAATAAT+TGG | 0.343426 | 4_1:+4379019 | Msa0530350:CDS |
| TACCCTTTCTGCAATAGAAT+TGG | 0.350763 | 4_1:-4378358 | None:intergenic |
| TATGTTGTTACTGGATTGTT+TGG | 0.363981 | 4_1:+4377812 | Msa0530350:CDS |
| CAAGGGAAAATTTCTTGACT+TGG | 0.366370 | 4_1:-4377513 | None:intergenic |
| GCTAAATCCAATGCTGCAAT+TGG | 0.370671 | 4_1:+4377572 | Msa0530350:CDS |
| AGCTTCTCCAATTGCAGCAT+TGG | 0.383599 | 4_1:-4377579 | None:intergenic |
| ATGGTGCATCCATTTGCTTT+GGG | 0.383801 | 4_1:+4378681 | Msa0530350:CDS |
| AGAGTTTGAAGATGTCATAA+AGG | 0.387448 | 4_1:+4379501 | Msa0530350:three_prime_UTR |
| TTGCTCCATTCAATTTCAAT+TGG | 0.406084 | 4_1:+4377762 | Msa0530350:CDS |
| ATTTCTTCAAGCTATTGGTT+TGG | 0.408326 | 4_1:+4379326 | Msa0530350:CDS |
| AATCCTTCAATTGGACTATG+AGG | 0.411864 | 4_1:-4378303 | None:intergenic |
| TGGGTGGCTTTGCTTGCATT+TGG | 0.421777 | 4_1:+4379210 | Msa0530350:CDS |
| CTAAACCAAAATCCTTCAAT+TGG | 0.423073 | 4_1:-4378312 | None:intergenic |
| TTGGATTTAGCTAAAATTTG+TGG | 0.427810 | 4_1:-4377560 | None:intergenic |
| TGAGTACTCACCCAATCAAT+TGG | 0.428803 | 4_1:-4378243 | None:intergenic |
| GAATATTTCTTTGCTTATTG+TGG | 0.429478 | 4_1:+4377896 | Msa0530350:CDS |
| CTTTCTCAGAATCGCAGAAC+TGG | 0.431035 | 4_1:-4378278 | None:intergenic |
| TTTGTGGATTAAAATTAAAA+GGG | 0.433266 | 4_1:-4377544 | None:intergenic |
| GTTCAATACCACAATCCAAT+AGG | 0.441276 | 4_1:+4377426 | Msa0530350:CDS |
| GTTTGAACTTTAAATGTTGA+AGG | 0.443069 | 4_1:-4377281 | None:intergenic |
| CTCTGCTTGTGACTCTCACT+TGG | 0.443237 | 4_1:-4379366 | None:intergenic |
| GGAGCTCTTCTATATGCCAT+TGG | 0.445054 | 4_1:+4378702 | Msa0530350:CDS |
| TCCTTTCCTAGTTTGGGGAA+TGG | 0.448055 | 4_1:+4378731 | Msa0530350:CDS |
| TGCTTGCATTTGGTGAAGGT+TGG | 0.449265 | 4_1:+4379220 | Msa0530350:CDS |
| TACCAATTCTATTGCAGAAA+GGG | 0.453900 | 4_1:+4378356 | Msa0530350:CDS |
| GGTTTACCACATCACTTGGT+TGG | 0.457985 | 4_1:+4378951 | Msa0530350:CDS |
| TGCAGGGAAATCCAATTGAT+TGG | 0.459418 | 4_1:+4378232 | Msa0530350:intron |
| AGAAGAGCTCCCAAAGCAAA+TGG | 0.459628 | 4_1:-4378690 | None:intergenic |
| TGTGAAGTGATTATGGAGAA+TGG | 0.465895 | 4_1:-4377393 | None:intergenic |
| GACCCTCATAGTCCAATTGA+AGG | 0.472286 | 4_1:+4378300 | Msa0530350:CDS |
| GTGAAGTGATTATGGAGAAT+GGG | 0.472628 | 4_1:-4377392 | None:intergenic |
| TATCAAATAGCCAACTCATA+TGG | 0.475373 | 4_1:-4378335 | None:intergenic |
| ACTAGACATGACTTGGTACT+TGG | 0.482819 | 4_1:+4379299 | Msa0530350:CDS |
| GCAGGCCAATTGAAATTGAA+TGG | 0.491186 | 4_1:-4377767 | None:intergenic |
| TTGATTGGGTGAGTACTCAT+AGG | 0.493839 | 4_1:+4378247 | Msa0530350:CDS |
| GGAAGCAGCCTTGGAACACA+AGG | 0.493979 | 4_1:+4378998 | Msa0530350:CDS |
| ATTGTGGTATTGAACAATGA+AGG | 0.501935 | 4_1:-4377418 | None:intergenic |
| GCTCTTCTATATGCCATTGG+TGG | 0.503296 | 4_1:+4378705 | Msa0530350:CDS |
| GCTTTGCTTGCATTTGGTGA+AGG | 0.503642 | 4_1:+4379216 | Msa0530350:CDS |
| GAATAACAACCTCTTTCCAT+AGG | 0.506415 | 4_1:+4377834 | Msa0530350:CDS |
| TTCTATGAGAAAGATTCCTA+TGG | 0.507187 | 4_1:-4377850 | None:intergenic |
| AACTCAGCTTGCCATGTTTG+GGG | 0.507788 | 4_1:+4378976 | Msa0530350:CDS |
| TTTGGGTTTACCACATCACT+TGG | 0.509967 | 4_1:+4378947 | Msa0530350:CDS |
| TTTCTCTAAATCACCAACAT+TGG | 0.511987 | 4_1:-4378625 | None:intergenic |
| TCCATACCATTCCCCAAACT+AGG | 0.513826 | 4_1:-4378737 | None:intergenic |
| TCTAAATCACCAACATTGGT+TGG | 0.515691 | 4_1:-4378621 | None:intergenic |
| ATTTCTTAGAAGCACTTACA+TGG | 0.521255 | 4_1:+4378662 | Msa0530350:CDS |
| GATAAGTCCCTTGTGTTCCA+AGG | 0.521266 | 4_1:-4379006 | None:intergenic |
| ATACCAATTCTATTGCAGAA+AGG | 0.521711 | 4_1:+4378355 | Msa0530350:CDS |
| TGAGAGTCACAAGCAGAGAA+TGG | 0.529468 | 4_1:+4379371 | Msa0530350:CDS |
| GGATTTCCTTTCCTAGTTTG+GGG | 0.531672 | 4_1:+4378726 | Msa0530350:CDS |
| TTTGGTTTAGCCATATGAGT+TGG | 0.532263 | 4_1:+4378325 | Msa0530350:CDS |
| CTGGATTTGACTATGTATAT+GGG | 0.537772 | 4_1:+4379581 | Msa0530350:three_prime_UTR |
| AAAATGGACCTATTGGATTG+TGG | 0.551466 | 4_1:-4377434 | None:intergenic |
| ACCATTCCCCAAACTAGGAA+AGG | 0.556117 | 4_1:-4378732 | None:intergenic |
| CCAGCACTCATCATTCAAAA+CGG | 0.560525 | 4_1:-4379562 | None:intergenic |
| AGAAAGATTCCTATGGAAAG+AGG | 0.561888 | 4_1:-4377843 | None:intergenic |
| GCAGGGAAATCCAATTGATT+GGG | 0.562931 | 4_1:+4378233 | Msa0530350:intron |
| CTAGACATGGTTTAGAGTGG+TGG | 0.569731 | 4_1:+4379274 | Msa0530350:CDS |
| AGCTATTGGTTTGGCAACTG+AGG | 0.572454 | 4_1:+4379335 | Msa0530350:CDS |
| TGTTGGAATTGATTGTGATG+TGG | 0.573190 | 4_1:-4377210 | None:intergenic |
| GTGACGCATGCAGGGTGTGA+GGG | 0.582497 | 4_1:+4378921 | Msa0530350:intron |
| CGTGACGCATGCAGGGTGTG+AGG | 0.588784 | 4_1:+4378920 | Msa0530350:intron |
| TAGACATGGTTTAGAGTGGT+GGG | 0.589542 | 4_1:+4379275 | Msa0530350:CDS |
| TCTCAGAATCGCAGAACTGG+TGG | 0.590963 | 4_1:-4378275 | None:intergenic |
| TAAAATTTATTATAGGTGGG+TGG | 0.592680 | 4_1:+4379194 | Msa0530350:intron |
| ATCCTTCAATTGGACTATGA+GGG | 0.594859 | 4_1:-4378302 | None:intergenic |
| CAGCTAGACATGGTTTAGAG+TGG | 0.598600 | 4_1:+4379271 | Msa0530350:CDS |
| TTGTGGTATTGAACAATGAA+GGG | 0.610117 | 4_1:-4377417 | None:intergenic |
| GGTGGGAACTAGACATGACT+TGG | 0.620906 | 4_1:+4379292 | Msa0530350:CDS |
| ACTCAGCTTGCCATGTTTGG+GGG | 0.621443 | 4_1:+4378977 | Msa0530350:CDS |
| TTTGAGTATTCAGCTAGACA+TGG | 0.625596 | 4_1:+4379261 | Msa0530350:CDS |
| GGCGTTGAATAATAATGATG+TGG | 0.634818 | 4_1:+4379392 | Msa0530350:CDS |
| TGTGGAGAACCAACCAATGT+TGG | 0.643102 | 4_1:+4378612 | Msa0530350:CDS |
| TAGGAAAGGAAATCCACCAA+TGG | 0.664948 | 4_1:-4378718 | None:intergenic |
| AGTTAACCAACCAAGTGATG+TGG | 0.665748 | 4_1:-4378957 | None:intergenic |
| TAGCTGAATACTCAAATGCA+TGG | 0.678756 | 4_1:-4379254 | None:intergenic |
| CTGAATACTCAAATGCATGG+TGG | 0.689708 | 4_1:-4379251 | None:intergenic |
| GAAGCAGCCTTGGAACACAA+GGG | 0.709052 | 4_1:+4378999 | Msa0530350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAGTTTTTTTTTCT+TGG | + | chr4_1:4377962-4377981 | Msa0530350:intron | 10.0% |
| !!! | TTGCTAAATTTTAATTATTT+TGG | + | chr4_1:4378767-4378786 | Msa0530350:intron | 10.0% |
| !!! | TGTTATCTAAAATTTATTAT+AGG | + | chr4_1:4379187-4379206 | Msa0530350:intron | 10.0% |
| !!! | TTTTTTTAGTTTTTTTTTCT+TGG | + | chr4_1:4377962-4377981 | Msa0530350:intron | 10.0% |
| !!! | TTGCTAAATTTTAATTATTT+TGG | + | chr4_1:4378767-4378786 | Msa0530350:intron | 10.0% |
| !!! | TGTTATCTAAAATTTATTAT+AGG | + | chr4_1:4379187-4379206 | Msa0530350:intron | 10.0% |
| !! | AAAAAAAATGTACTTGTTTA+TGG | - | chr4_1:4377336-4377355 | None:intergenic | 15.0% |
| !!! | TTTGTGGATTAAAATTAAAA+GGG | - | chr4_1:4377547-4377566 | None:intergenic | 15.0% |
| !!! | ATTTGTGGATTAAAATTAAA+AGG | - | chr4_1:4377548-4377567 | None:intergenic | 15.0% |
| !! | TTATTAAATGTAGTTGAAAT+TGG | + | chr4_1:4378023-4378042 | Msa0530350:intron | 15.0% |
| !!! | TGTAGTTTTTACTAAAATTA+TGG | + | chr4_1:4378501-4378520 | Msa0530350:intron | 15.0% |
| !!! | TATCTAAAATTTATTATAGG+TGG | + | chr4_1:4379190-4379209 | Msa0530350:intron | 15.0% |
| !!! | ATCTAAAATTTATTATAGGT+GGG | + | chr4_1:4379191-4379210 | Msa0530350:intron | 15.0% |
| !!! | AATACACTTTTTTTTATTGA+AGG | + | chr4_1:4379426-4379445 | Msa0530350:three_prime_UTR | 15.0% |
| !! | AAAAAAAATGTACTTGTTTA+TGG | - | chr4_1:4377336-4377355 | None:intergenic | 15.0% |
| !!! | TTTGTGGATTAAAATTAAAA+GGG | - | chr4_1:4377547-4377566 | None:intergenic | 15.0% |
| !!! | ATTTGTGGATTAAAATTAAA+AGG | - | chr4_1:4377548-4377567 | None:intergenic | 15.0% |
| !! | TTATTAAATGTAGTTGAAAT+TGG | + | chr4_1:4378023-4378042 | Msa0530350:intron | 15.0% |
| !!! | TGTAGTTTTTACTAAAATTA+TGG | + | chr4_1:4378501-4378520 | Msa0530350:intron | 15.0% |
| !!! | TATCTAAAATTTATTATAGG+TGG | + | chr4_1:4379190-4379209 | Msa0530350:intron | 15.0% |
| !!! | ATCTAAAATTTATTATAGGT+GGG | + | chr4_1:4379191-4379210 | Msa0530350:intron | 15.0% |
| !!! | AATACACTTTTTTTTATTGA+AGG | + | chr4_1:4379426-4379445 | Msa0530350:three_prime_UTR | 15.0% |
| !! | AAATGGAATTCTTTAGATAT+TGG | + | chr4_1:4377698-4377717 | Msa0530350:CDS | 20.0% |
| !!! | AGTTTTTACTAAAATTATGG+TGG | + | chr4_1:4378504-4378523 | Msa0530350:intron | 20.0% |
| !!! | ATTTAGTTCTTGAAATTGTT+CGG | + | chr4_1:4378798-4378817 | Msa0530350:intron | 20.0% |
| !! | ATGTATTGAAACTTAATCTA+TGG | - | chr4_1:4378883-4378902 | None:intergenic | 20.0% |
| !!! | AAAAAAAAGTGTATTTCATG+TGG | - | chr4_1:4379421-4379440 | None:intergenic | 20.0% |
| !! | AAATGGAATTCTTTAGATAT+TGG | + | chr4_1:4377698-4377717 | Msa0530350:CDS | 20.0% |
| !!! | AGTTTTTACTAAAATTATGG+TGG | + | chr4_1:4378504-4378523 | Msa0530350:intron | 20.0% |
| !!! | ATTTAGTTCTTGAAATTGTT+CGG | + | chr4_1:4378798-4378817 | Msa0530350:intron | 20.0% |
| !! | ATGTATTGAAACTTAATCTA+TGG | - | chr4_1:4378883-4378902 | None:intergenic | 20.0% |
| !!! | AAAAAAAAGTGTATTTCATG+TGG | - | chr4_1:4379421-4379440 | None:intergenic | 20.0% |
| !! | TTTTATGTTTTGTGTTGTGT+TGG | - | chr4_1:4377230-4377249 | None:intergenic | 25.0% |
| !!! | TGAAGGTGATATTGTTTTTT+GGG | - | chr4_1:4377267-4377286 | None:intergenic | 25.0% |
| !!! | TTGAAGGTGATATTGTTTTT+TGG | - | chr4_1:4377268-4377287 | None:intergenic | 25.0% |
| ! | GTTTGAACTTTAAATGTTGA+AGG | - | chr4_1:4377284-4377303 | None:intergenic | 25.0% |
| !! | TTTTTGTGAAACAAGATAGA+GGG | - | chr4_1:4377306-4377325 | None:intergenic | 25.0% |
| !!! | GTACATTTTTTTTTTCTGCA+TGG | + | chr4_1:4377343-4377362 | Msa0530350:exon | 25.0% |
| !! | AAGATTTAAAATGGACCTAT+TGG | - | chr4_1:4377444-4377463 | None:intergenic | 25.0% |
| !! | AATAGGTCCATTTTAAATCT+TGG | + | chr4_1:4377443-4377462 | Msa0530350:CDS | 25.0% |
| !! | ATAGGTCCATTTTAAATCTT+GGG | + | chr4_1:4377444-4377463 | Msa0530350:CDS | 25.0% |
| !!! | TTAAAAGGGTTGTTTTTCAA+GGG | - | chr4_1:4377533-4377552 | None:intergenic | 25.0% |
| !!! | ATTAAAAGGGTTGTTTTTCA+AGG | - | chr4_1:4377534-4377553 | None:intergenic | 25.0% |
| ! | TTGGATTTAGCTAAAATTTG+TGG | - | chr4_1:4377563-4377582 | None:intergenic | 25.0% |
| !!! | AGAGAAAAAGAAGTGTTTTT+TGG | + | chr4_1:4377671-4377690 | Msa0530350:CDS | 25.0% |
| !!! | GAGAAAAAGAAGTGTTTTTT+GGG | + | chr4_1:4377672-4377691 | Msa0530350:CDS | 25.0% |
| ! | AAGAAATATTCAAGCCATTT+AGG | - | chr4_1:4377887-4377906 | None:intergenic | 25.0% |
| ! | GAATATTTCTTTGCTTATTG+TGG | + | chr4_1:4377896-4377915 | Msa0530350:CDS | 25.0% |
| ! | GTCTATGTTGTTAAATTAGT+TGG | + | chr4_1:4377997-4378016 | Msa0530350:intron | 25.0% |
| ! | AAATGTAGTTGAAATTGGTT+AGG | + | chr4_1:4378028-4378047 | Msa0530350:intron | 25.0% |
| !!! | AAATGCACTAAAGTTTTGTA+TGG | - | chr4_1:4378416-4378435 | None:intergenic | 25.0% |
| ! | AAACTTAATCTATGGAATCA+AGG | - | chr4_1:4378875-4378894 | None:intergenic | 25.0% |
| !! | AATTTGTATGCGACTTTTTA+CGG | + | chr4_1:4379080-4379099 | Msa0530350:intron | 25.0% |
| ! | TAAAATTTATTATAGGTGGG+TGG | + | chr4_1:4379194-4379213 | Msa0530350:intron | 25.0% |
| !! | TTTTATGTTTTGTGTTGTGT+TGG | - | chr4_1:4377230-4377249 | None:intergenic | 25.0% |
| !!! | TGAAGGTGATATTGTTTTTT+GGG | - | chr4_1:4377267-4377286 | None:intergenic | 25.0% |
| !!! | TTGAAGGTGATATTGTTTTT+TGG | - | chr4_1:4377268-4377287 | None:intergenic | 25.0% |
| ! | GTTTGAACTTTAAATGTTGA+AGG | - | chr4_1:4377284-4377303 | None:intergenic | 25.0% |
| !! | TTTTTGTGAAACAAGATAGA+GGG | - | chr4_1:4377306-4377325 | None:intergenic | 25.0% |
| !!! | GTACATTTTTTTTTTCTGCA+TGG | + | chr4_1:4377343-4377362 | Msa0530350:exon | 25.0% |
| !! | AAGATTTAAAATGGACCTAT+TGG | - | chr4_1:4377444-4377463 | None:intergenic | 25.0% |
| !! | AATAGGTCCATTTTAAATCT+TGG | + | chr4_1:4377443-4377462 | Msa0530350:CDS | 25.0% |
| !! | ATAGGTCCATTTTAAATCTT+GGG | + | chr4_1:4377444-4377463 | Msa0530350:CDS | 25.0% |
| !!! | TTAAAAGGGTTGTTTTTCAA+GGG | - | chr4_1:4377533-4377552 | None:intergenic | 25.0% |
| !!! | ATTAAAAGGGTTGTTTTTCA+AGG | - | chr4_1:4377534-4377553 | None:intergenic | 25.0% |
| ! | TTGGATTTAGCTAAAATTTG+TGG | - | chr4_1:4377563-4377582 | None:intergenic | 25.0% |
| !!! | AGAGAAAAAGAAGTGTTTTT+TGG | + | chr4_1:4377671-4377690 | Msa0530350:CDS | 25.0% |
| !!! | GAGAAAAAGAAGTGTTTTTT+GGG | + | chr4_1:4377672-4377691 | Msa0530350:CDS | 25.0% |
| ! | AAGAAATATTCAAGCCATTT+AGG | - | chr4_1:4377887-4377906 | None:intergenic | 25.0% |
| ! | GAATATTTCTTTGCTTATTG+TGG | + | chr4_1:4377896-4377915 | Msa0530350:CDS | 25.0% |
| ! | GTCTATGTTGTTAAATTAGT+TGG | + | chr4_1:4377997-4378016 | Msa0530350:intron | 25.0% |
| ! | AAATGTAGTTGAAATTGGTT+AGG | + | chr4_1:4378028-4378047 | Msa0530350:intron | 25.0% |
| !!! | AAATGCACTAAAGTTTTGTA+TGG | - | chr4_1:4378416-4378435 | None:intergenic | 25.0% |
| ! | AAACTTAATCTATGGAATCA+AGG | - | chr4_1:4378875-4378894 | None:intergenic | 25.0% |
| !! | AATTTGTATGCGACTTTTTA+CGG | + | chr4_1:4379080-4379099 | Msa0530350:intron | 25.0% |
| ! | TAAAATTTATTATAGGTGGG+TGG | + | chr4_1:4379194-4379213 | Msa0530350:intron | 25.0% |
| ! | CTTTTTGTGAAACAAGATAG+AGG | - | chr4_1:4377307-4377326 | None:intergenic | 30.0% |
| ! | CTCTATCTTGTTTCACAAAA+AGG | + | chr4_1:4377305-4377324 | Msa0530350:five_prime_UTR | 30.0% |
| ! | TTATGGAGAATGGGATTTTT+AGG | - | chr4_1:4377386-4377405 | None:intergenic | 30.0% |
| ! | TTGTGGTATTGAACAATGAA+GGG | - | chr4_1:4377420-4377439 | None:intergenic | 30.0% |
| ! | ATTGTGGTATTGAACAATGA+AGG | - | chr4_1:4377421-4377440 | None:intergenic | 30.0% |
| !!! | GCTTTTGCATTTTTTGAGAA+TGG | - | chr4_1:4377470-4377489 | None:intergenic | 30.0% |
| GTTGAAGTTACACACTTTAA+TGG | - | chr4_1:4377492-4377511 | None:intergenic | 30.0% | |
| !!! | AAAAAGAAGTGTTTTTTGGG+AGG | + | chr4_1:4377675-4377694 | Msa0530350:CDS | 30.0% |
| TTGCTCCATTCAATTTCAAT+TGG | + | chr4_1:4377762-4377781 | Msa0530350:CDS | 30.0% | |
| TATGTTGTTACTGGATTGTT+TGG | + | chr4_1:4377812-4377831 | Msa0530350:CDS | 30.0% | |
| TTCTATGAGAAAGATTCCTA+TGG | - | chr4_1:4377853-4377872 | None:intergenic | 30.0% | |
| !!! | GAAGTTTTAAGCTTCCTAAA+TGG | + | chr4_1:4377870-4377889 | Msa0530350:CDS | 30.0% |
| !! | TCATACCATTCATGTTGTTT+TGG | + | chr4_1:4378201-4378220 | Msa0530350:intron | 30.0% |
| CAAAACCAAAACAACATGAA+TGG | - | chr4_1:4378209-4378228 | None:intergenic | 30.0% | |
| !!! | CATTCATGTTGTTTTGGTTT+TGG | + | chr4_1:4378207-4378226 | Msa0530350:intron | 30.0% |
| ! | ATAGTCCAATTGAAGGATTT+TGG | + | chr4_1:4378307-4378326 | Msa0530350:CDS | 30.0% |
| CTAAACCAAAATCCTTCAAT+TGG | - | chr4_1:4378315-4378334 | None:intergenic | 30.0% | |
| TATCAAATAGCCAACTCATA+TGG | - | chr4_1:4378338-4378357 | None:intergenic | 30.0% | |
| ATACCAATTCTATTGCAGAA+AGG | + | chr4_1:4378355-4378374 | Msa0530350:CDS | 30.0% | |
| TACCAATTCTATTGCAGAAA+GGG | + | chr4_1:4378356-4378375 | Msa0530350:CDS | 30.0% | |
| ! | TTAGTGCATTTTGAATTGAC+AGG | + | chr4_1:4378425-4378444 | Msa0530350:intron | 30.0% |
| ! | TAGTGCATTTTGAATTGACA+GGG | + | chr4_1:4378426-4378445 | Msa0530350:intron | 30.0% |
| TATCACACAATCAATTCAAG+TGG | - | chr4_1:4378579-4378598 | None:intergenic | 30.0% | |
| TTTCTCTAAATCACCAACAT+TGG | - | chr4_1:4378628-4378647 | None:intergenic | 30.0% | |
| !! | ATTTCTTAGAAGCACTTACA+TGG | + | chr4_1:4378662-4378681 | Msa0530350:CDS | 30.0% |
| GGGACTTATCTAGAAATAAT+TGG | + | chr4_1:4379019-4379038 | Msa0530350:CDS | 30.0% | |
| CTTAAAAATCATGCGAAAGA+TGG | - | chr4_1:4379123-4379142 | None:intergenic | 30.0% | |
| GTCAAATTTCTTCAAGCTAT+TGG | + | chr4_1:4379321-4379340 | Msa0530350:CDS | 30.0% | |
| ! | ATTTCTTCAAGCTATTGGTT+TGG | + | chr4_1:4379326-4379345 | Msa0530350:CDS | 30.0% |
| AGAGTTTGAAGATGTCATAA+AGG | + | chr4_1:4379501-4379520 | Msa0530350:three_prime_UTR | 30.0% | |
| CTGGATTTGACTATGTATAT+GGG | + | chr4_1:4379581-4379600 | Msa0530350:three_prime_UTR | 30.0% | |
| ! | CTTTTTGTGAAACAAGATAG+AGG | - | chr4_1:4377307-4377326 | None:intergenic | 30.0% |
| ! | CTCTATCTTGTTTCACAAAA+AGG | + | chr4_1:4377305-4377324 | Msa0530350:five_prime_UTR | 30.0% |
| ! | TTATGGAGAATGGGATTTTT+AGG | - | chr4_1:4377386-4377405 | None:intergenic | 30.0% |
| ! | TTGTGGTATTGAACAATGAA+GGG | - | chr4_1:4377420-4377439 | None:intergenic | 30.0% |
| ! | ATTGTGGTATTGAACAATGA+AGG | - | chr4_1:4377421-4377440 | None:intergenic | 30.0% |
| !!! | GCTTTTGCATTTTTTGAGAA+TGG | - | chr4_1:4377470-4377489 | None:intergenic | 30.0% |
| GTTGAAGTTACACACTTTAA+TGG | - | chr4_1:4377492-4377511 | None:intergenic | 30.0% | |
| !!! | AAAAAGAAGTGTTTTTTGGG+AGG | + | chr4_1:4377675-4377694 | Msa0530350:CDS | 30.0% |
| TTGCTCCATTCAATTTCAAT+TGG | + | chr4_1:4377762-4377781 | Msa0530350:CDS | 30.0% | |
| TATGTTGTTACTGGATTGTT+TGG | + | chr4_1:4377812-4377831 | Msa0530350:CDS | 30.0% | |
| TTCTATGAGAAAGATTCCTA+TGG | - | chr4_1:4377853-4377872 | None:intergenic | 30.0% | |
| !!! | GAAGTTTTAAGCTTCCTAAA+TGG | + | chr4_1:4377870-4377889 | Msa0530350:CDS | 30.0% |
| !! | TCATACCATTCATGTTGTTT+TGG | + | chr4_1:4378201-4378220 | Msa0530350:intron | 30.0% |
| CAAAACCAAAACAACATGAA+TGG | - | chr4_1:4378209-4378228 | None:intergenic | 30.0% | |
| !!! | CATTCATGTTGTTTTGGTTT+TGG | + | chr4_1:4378207-4378226 | Msa0530350:intron | 30.0% |
| ! | ATAGTCCAATTGAAGGATTT+TGG | + | chr4_1:4378307-4378326 | Msa0530350:CDS | 30.0% |
| CTAAACCAAAATCCTTCAAT+TGG | - | chr4_1:4378315-4378334 | None:intergenic | 30.0% | |
| TATCAAATAGCCAACTCATA+TGG | - | chr4_1:4378338-4378357 | None:intergenic | 30.0% | |
| ATACCAATTCTATTGCAGAA+AGG | + | chr4_1:4378355-4378374 | Msa0530350:CDS | 30.0% | |
| TACCAATTCTATTGCAGAAA+GGG | + | chr4_1:4378356-4378375 | Msa0530350:CDS | 30.0% | |
| ! | TTAGTGCATTTTGAATTGAC+AGG | + | chr4_1:4378425-4378444 | Msa0530350:intron | 30.0% |
| ! | TAGTGCATTTTGAATTGACA+GGG | + | chr4_1:4378426-4378445 | Msa0530350:intron | 30.0% |
| TATCACACAATCAATTCAAG+TGG | - | chr4_1:4378579-4378598 | None:intergenic | 30.0% | |
| TTTCTCTAAATCACCAACAT+TGG | - | chr4_1:4378628-4378647 | None:intergenic | 30.0% | |
| !! | ATTTCTTAGAAGCACTTACA+TGG | + | chr4_1:4378662-4378681 | Msa0530350:CDS | 30.0% |
| GGGACTTATCTAGAAATAAT+TGG | + | chr4_1:4379019-4379038 | Msa0530350:CDS | 30.0% | |
| CTTAAAAATCATGCGAAAGA+TGG | - | chr4_1:4379123-4379142 | None:intergenic | 30.0% | |
| GTCAAATTTCTTCAAGCTAT+TGG | + | chr4_1:4379321-4379340 | Msa0530350:CDS | 30.0% | |
| ! | ATTTCTTCAAGCTATTGGTT+TGG | + | chr4_1:4379326-4379345 | Msa0530350:CDS | 30.0% |
| AGAGTTTGAAGATGTCATAA+AGG | + | chr4_1:4379501-4379520 | Msa0530350:three_prime_UTR | 30.0% | |
| CTGGATTTGACTATGTATAT+GGG | + | chr4_1:4379581-4379600 | Msa0530350:three_prime_UTR | 30.0% | |
| TGTTGGAATTGATTGTGATG+TGG | - | chr4_1:4377213-4377232 | None:intergenic | 35.0% | |
| GTGAAGTGATTATGGAGAAT+GGG | - | chr4_1:4377395-4377414 | None:intergenic | 35.0% | |
| TGTGAAGTGATTATGGAGAA+TGG | - | chr4_1:4377396-4377415 | None:intergenic | 35.0% | |
| GTTCAATACCACAATCCAAT+AGG | + | chr4_1:4377426-4377445 | Msa0530350:CDS | 35.0% | |
| AAAATGGACCTATTGGATTG+TGG | - | chr4_1:4377437-4377456 | None:intergenic | 35.0% | |
| GAATGGCCCAAGATTTAAAA+TGG | - | chr4_1:4377453-4377472 | None:intergenic | 35.0% | |
| CAAGGGAAAATTTCTTGACT+TGG | - | chr4_1:4377516-4377535 | None:intergenic | 35.0% | |
| TTCAATGACACTTCTTCTTC+TGG | - | chr4_1:4377614-4377633 | None:intergenic | 35.0% | |
| !!! | AAGTGTTTTTTGGGAGGAAA+TGG | + | chr4_1:4377681-4377700 | Msa0530350:CDS | 35.0% |
| !! | ATTTCAATTGGCCTGCTTTT+TGG | + | chr4_1:4377774-4377793 | Msa0530350:CDS | 35.0% |
| !!! | TTTCAATTGGCCTGCTTTTT+GGG | + | chr4_1:4377775-4377794 | Msa0530350:CDS | 35.0% |
| GAATAACAACCTCTTTCCAT+AGG | + | chr4_1:4377834-4377853 | Msa0530350:CDS | 35.0% | |
| AGAAAGATTCCTATGGAAAG+AGG | - | chr4_1:4377846-4377865 | None:intergenic | 35.0% | |
| !! | TTGGGATTTTCTAGCATTCA+TGG | + | chr4_1:4378112-4378131 | Msa0530350:intron | 35.0% |
| ATCCTTCAATTGGACTATGA+GGG | - | chr4_1:4378305-4378324 | None:intergenic | 35.0% | |
| AATCCTTCAATTGGACTATG+AGG | - | chr4_1:4378306-4378325 | None:intergenic | 35.0% | |
| ! | TTTGGTTTAGCCATATGAGT+TGG | + | chr4_1:4378325-4378344 | Msa0530350:CDS | 35.0% |
| TACCCTTTCTGCAATAGAAT+TGG | - | chr4_1:4378361-4378380 | None:intergenic | 35.0% | |
| AAAATAGTGTCACGATGACT+CGG | + | chr4_1:4378457-4378476 | Msa0530350:intron | 35.0% | |
| TCTAAATCACCAACATTGGT+TGG | - | chr4_1:4378624-4378643 | None:intergenic | 35.0% | |
| TGGATTTCCTTTCCTAGTTT+GGG | + | chr4_1:4378725-4378744 | Msa0530350:CDS | 35.0% | |
| GTTCTTGAAATTGTTCGGTA+AGG | + | chr4_1:4378803-4378822 | Msa0530350:intron | 35.0% | |
| TAGCTGAATACTCAAATGCA+TGG | - | chr4_1:4379257-4379276 | None:intergenic | 35.0% | |
| TTTGAGTATTCAGCTAGACA+TGG | + | chr4_1:4379261-4379280 | Msa0530350:CDS | 35.0% | |
| ! | GGCGTTGAATAATAATGATG+TGG | + | chr4_1:4379392-4379411 | Msa0530350:CDS | 35.0% |
| ! | GATGTCATAAAGGTTTTCGT+AGG | + | chr4_1:4379511-4379530 | Msa0530350:three_prime_UTR | 35.0% |
| GCTGGATTTGACTATGTATA+TGG | + | chr4_1:4379580-4379599 | Msa0530350:three_prime_UTR | 35.0% | |
| GTTGGAATTGATTGTGATGT+GGG | - | chr4_1:4377212-4377231 | None:intergenic | 35.0% | |
| TGTTGGAATTGATTGTGATG+TGG | - | chr4_1:4377213-4377232 | None:intergenic | 35.0% | |
| GTGAAGTGATTATGGAGAAT+GGG | - | chr4_1:4377395-4377414 | None:intergenic | 35.0% | |
| TGTGAAGTGATTATGGAGAA+TGG | - | chr4_1:4377396-4377415 | None:intergenic | 35.0% | |
| GTTCAATACCACAATCCAAT+AGG | + | chr4_1:4377426-4377445 | Msa0530350:CDS | 35.0% | |
| AAAATGGACCTATTGGATTG+TGG | - | chr4_1:4377437-4377456 | None:intergenic | 35.0% | |
| GAATGGCCCAAGATTTAAAA+TGG | - | chr4_1:4377453-4377472 | None:intergenic | 35.0% | |
| CAAGGGAAAATTTCTTGACT+TGG | - | chr4_1:4377516-4377535 | None:intergenic | 35.0% | |
| TTCAATGACACTTCTTCTTC+TGG | - | chr4_1:4377614-4377633 | None:intergenic | 35.0% | |
| !!! | AAGTGTTTTTTGGGAGGAAA+TGG | + | chr4_1:4377681-4377700 | Msa0530350:CDS | 35.0% |
| !! | ATTTCAATTGGCCTGCTTTT+TGG | + | chr4_1:4377774-4377793 | Msa0530350:CDS | 35.0% |
| !!! | TTTCAATTGGCCTGCTTTTT+GGG | + | chr4_1:4377775-4377794 | Msa0530350:CDS | 35.0% |
| GAATAACAACCTCTTTCCAT+AGG | + | chr4_1:4377834-4377853 | Msa0530350:CDS | 35.0% | |
| AGAAAGATTCCTATGGAAAG+AGG | - | chr4_1:4377846-4377865 | None:intergenic | 35.0% | |
| !! | TTGGGATTTTCTAGCATTCA+TGG | + | chr4_1:4378112-4378131 | Msa0530350:intron | 35.0% |
| ATCCTTCAATTGGACTATGA+GGG | - | chr4_1:4378305-4378324 | None:intergenic | 35.0% | |
| AATCCTTCAATTGGACTATG+AGG | - | chr4_1:4378306-4378325 | None:intergenic | 35.0% | |
| ! | TTTGGTTTAGCCATATGAGT+TGG | + | chr4_1:4378325-4378344 | Msa0530350:CDS | 35.0% |
| TACCCTTTCTGCAATAGAAT+TGG | - | chr4_1:4378361-4378380 | None:intergenic | 35.0% | |
| AAAATAGTGTCACGATGACT+CGG | + | chr4_1:4378457-4378476 | Msa0530350:intron | 35.0% | |
| TCTAAATCACCAACATTGGT+TGG | - | chr4_1:4378624-4378643 | None:intergenic | 35.0% | |
| TGGATTTCCTTTCCTAGTTT+GGG | + | chr4_1:4378725-4378744 | Msa0530350:CDS | 35.0% | |
| GTTCTTGAAATTGTTCGGTA+AGG | + | chr4_1:4378803-4378822 | Msa0530350:intron | 35.0% | |
| TAGCTGAATACTCAAATGCA+TGG | - | chr4_1:4379257-4379276 | None:intergenic | 35.0% | |
| TTTGAGTATTCAGCTAGACA+TGG | + | chr4_1:4379261-4379280 | Msa0530350:CDS | 35.0% | |
| ! | GGCGTTGAATAATAATGATG+TGG | + | chr4_1:4379392-4379411 | Msa0530350:CDS | 35.0% |
| ! | GATGTCATAAAGGTTTTCGT+AGG | + | chr4_1:4379511-4379530 | Msa0530350:three_prime_UTR | 35.0% |
| GCTGGATTTGACTATGTATA+TGG | + | chr4_1:4379580-4379599 | Msa0530350:three_prime_UTR | 35.0% | |
| GAAGGGTTGTGAAGTGATTA+TGG | - | chr4_1:4377403-4377422 | None:intergenic | 40.0% | |
| GCTAAATCCAATGCTGCAAT+TGG | + | chr4_1:4377572-4377591 | Msa0530350:CDS | 40.0% | |
| GCAGGCCAATTGAAATTGAA+TGG | - | chr4_1:4377770-4377789 | None:intergenic | 40.0% | |
| GTGGCACTTTATGTTGTTAC+TGG | + | chr4_1:4377803-4377822 | Msa0530350:CDS | 40.0% | |
| CGGAGATTCAAAATGTGGTT+GGG | - | chr4_1:4378089-4378108 | None:intergenic | 40.0% | |
| AACTGCGGAGATTCAAAATG+TGG | - | chr4_1:4378094-4378113 | None:intergenic | 40.0% | |
| ! | ACATTTTGAATCTCCGCAGT+TGG | + | chr4_1:4378093-4378112 | Msa0530350:intron | 40.0% |
| ! | CATTTTGAATCTCCGCAGTT+GGG | + | chr4_1:4378094-4378113 | Msa0530350:intron | 40.0% |
| ATGCTAGAAAATCCCAACTG+CGG | - | chr4_1:4378109-4378128 | None:intergenic | 40.0% | |
| ! | TTTCTAGCATTCATGGAGAC+AGG | + | chr4_1:4378119-4378138 | Msa0530350:intron | 40.0% |
| !!! | TTGTTTTGGTTTTGGTGTGC+AGG | + | chr4_1:4378215-4378234 | Msa0530350:intron | 40.0% |
| !!! | TGTTTTGGTTTTGGTGTGCA+GGG | + | chr4_1:4378216-4378235 | Msa0530350:intron | 40.0% |
| TGCAGGGAAATCCAATTGAT+TGG | + | chr4_1:4378232-4378251 | Msa0530350:intron | 40.0% | |
| GCAGGGAAATCCAATTGATT+GGG | + | chr4_1:4378233-4378252 | Msa0530350:intron | 40.0% | |
| TGAGTACTCACCCAATCAAT+TGG | - | chr4_1:4378246-4378265 | None:intergenic | 40.0% | |
| TTGATTGGGTGAGTACTCAT+AGG | + | chr4_1:4378247-4378266 | Msa0530350:CDS | 40.0% | |
| TGATATGTATGTGTGCAGTG+TGG | + | chr4_1:4378594-4378613 | Msa0530350:intron | 40.0% | |
| ATGGTGCATCCATTTGCTTT+GGG | + | chr4_1:4378681-4378700 | Msa0530350:CDS | 40.0% | |
| TAGGAAAGGAAATCCACCAA+TGG | - | chr4_1:4378721-4378740 | None:intergenic | 40.0% | |
| GTGGATTTCCTTTCCTAGTT+TGG | + | chr4_1:4378724-4378743 | Msa0530350:CDS | 40.0% | |
| GGATTTCCTTTCCTAGTTTG+GGG | + | chr4_1:4378726-4378745 | Msa0530350:CDS | 40.0% | |
| ! | TTTGGGTTTACCACATCACT+TGG | + | chr4_1:4378947-4378966 | Msa0530350:CDS | 40.0% |
| AGTTAACCAACCAAGTGATG+TGG | - | chr4_1:4378960-4378979 | None:intergenic | 40.0% | |
| TTAACTCAGCTTGCCATGTT+TGG | + | chr4_1:4378974-4378993 | Msa0530350:CDS | 40.0% | |
| TAACTCAGCTTGCCATGTTT+GGG | + | chr4_1:4378975-4378994 | Msa0530350:CDS | 40.0% | |
| CTGAATACTCAAATGCATGG+TGG | - | chr4_1:4379254-4379273 | None:intergenic | 40.0% | |
| ! | TAGACATGGTTTAGAGTGGT+GGG | + | chr4_1:4379275-4379294 | Msa0530350:CDS | 40.0% |
| !! | ACTAGACATGACTTGGTACT+TGG | + | chr4_1:4379299-4379318 | Msa0530350:CDS | 40.0% |
| CCAGCACTCATCATTCAAAA+CGG | - | chr4_1:4379565-4379584 | None:intergenic | 40.0% | |
| GAAGGGTTGTGAAGTGATTA+TGG | - | chr4_1:4377403-4377422 | None:intergenic | 40.0% | |
| GCTAAATCCAATGCTGCAAT+TGG | + | chr4_1:4377572-4377591 | Msa0530350:CDS | 40.0% | |
| GCAGGCCAATTGAAATTGAA+TGG | - | chr4_1:4377770-4377789 | None:intergenic | 40.0% | |
| GTGGCACTTTATGTTGTTAC+TGG | + | chr4_1:4377803-4377822 | Msa0530350:CDS | 40.0% | |
| CGGAGATTCAAAATGTGGTT+GGG | - | chr4_1:4378089-4378108 | None:intergenic | 40.0% | |
| AACTGCGGAGATTCAAAATG+TGG | - | chr4_1:4378094-4378113 | None:intergenic | 40.0% | |
| ! | ACATTTTGAATCTCCGCAGT+TGG | + | chr4_1:4378093-4378112 | Msa0530350:intron | 40.0% |
| ! | CATTTTGAATCTCCGCAGTT+GGG | + | chr4_1:4378094-4378113 | Msa0530350:intron | 40.0% |
| ATGCTAGAAAATCCCAACTG+CGG | - | chr4_1:4378109-4378128 | None:intergenic | 40.0% | |
| ! | TTTCTAGCATTCATGGAGAC+AGG | + | chr4_1:4378119-4378138 | Msa0530350:intron | 40.0% |
| !!! | TTGTTTTGGTTTTGGTGTGC+AGG | + | chr4_1:4378215-4378234 | Msa0530350:intron | 40.0% |
| !!! | TGTTTTGGTTTTGGTGTGCA+GGG | + | chr4_1:4378216-4378235 | Msa0530350:intron | 40.0% |
| TGCAGGGAAATCCAATTGAT+TGG | + | chr4_1:4378232-4378251 | Msa0530350:intron | 40.0% | |
| GCAGGGAAATCCAATTGATT+GGG | + | chr4_1:4378233-4378252 | Msa0530350:intron | 40.0% | |
| TGAGTACTCACCCAATCAAT+TGG | - | chr4_1:4378246-4378265 | None:intergenic | 40.0% | |
| TTGATTGGGTGAGTACTCAT+AGG | + | chr4_1:4378247-4378266 | Msa0530350:CDS | 40.0% | |
| TGATATGTATGTGTGCAGTG+TGG | + | chr4_1:4378594-4378613 | Msa0530350:intron | 40.0% | |
| ATGGTGCATCCATTTGCTTT+GGG | + | chr4_1:4378681-4378700 | Msa0530350:CDS | 40.0% | |
| TAGGAAAGGAAATCCACCAA+TGG | - | chr4_1:4378721-4378740 | None:intergenic | 40.0% | |
| GTGGATTTCCTTTCCTAGTT+TGG | + | chr4_1:4378724-4378743 | Msa0530350:CDS | 40.0% | |
| GGATTTCCTTTCCTAGTTTG+GGG | + | chr4_1:4378726-4378745 | Msa0530350:CDS | 40.0% | |
| ! | TTTGGGTTTACCACATCACT+TGG | + | chr4_1:4378947-4378966 | Msa0530350:CDS | 40.0% |
| AGTTAACCAACCAAGTGATG+TGG | - | chr4_1:4378960-4378979 | None:intergenic | 40.0% | |
| TTAACTCAGCTTGCCATGTT+TGG | + | chr4_1:4378974-4378993 | Msa0530350:CDS | 40.0% | |
| TAACTCAGCTTGCCATGTTT+GGG | + | chr4_1:4378975-4378994 | Msa0530350:CDS | 40.0% | |
| CTGAATACTCAAATGCATGG+TGG | - | chr4_1:4379254-4379273 | None:intergenic | 40.0% | |
| ! | TAGACATGGTTTAGAGTGGT+GGG | + | chr4_1:4379275-4379294 | Msa0530350:CDS | 40.0% |
| !! | ACTAGACATGACTTGGTACT+TGG | + | chr4_1:4379299-4379318 | Msa0530350:CDS | 40.0% |
| CCAGCACTCATCATTCAAAA+CGG | - | chr4_1:4379565-4379584 | None:intergenic | 40.0% | |
| AGCTTCTCCAATTGCAGCAT+TGG | - | chr4_1:4377582-4377601 | None:intergenic | 45.0% | |
| TTGTGGAGTTCTTGCTCTTC+AGG | + | chr4_1:4377913-4377932 | Msa0530350:CDS | 45.0% | |
| GCGGAGATTCAAAATGTGGT+TGG | - | chr4_1:4378090-4378109 | None:intergenic | 45.0% | |
| CATTCATGGAGACAGGACAT+TGG | + | chr4_1:4378126-4378145 | Msa0530350:intron | 45.0% | |
| CTTTCTCAGAATCGCAGAAC+TGG | - | chr4_1:4378281-4378300 | None:intergenic | 45.0% | |
| GACCCTCATAGTCCAATTGA+AGG | + | chr4_1:4378300-4378319 | Msa0530350:CDS | 45.0% | |
| TGTGGAGAACCAACCAATGT+TGG | + | chr4_1:4378612-4378631 | Msa0530350:CDS | 45.0% | |
| CATGGTGCATCCATTTGCTT+TGG | + | chr4_1:4378680-4378699 | Msa0530350:CDS | 45.0% | |
| AGAAGAGCTCCCAAAGCAAA+TGG | - | chr4_1:4378693-4378712 | None:intergenic | 45.0% | |
| GGAGCTCTTCTATATGCCAT+TGG | + | chr4_1:4378702-4378721 | Msa0530350:CDS | 45.0% | |
| GCTCTTCTATATGCCATTGG+TGG | + | chr4_1:4378705-4378724 | Msa0530350:CDS | 45.0% | |
| TCCTTTCCTAGTTTGGGGAA+TGG | + | chr4_1:4378731-4378750 | Msa0530350:CDS | 45.0% | |
| ACCATTCCCCAAACTAGGAA+AGG | - | chr4_1:4378735-4378754 | None:intergenic | 45.0% | |
| TCCTAGTTTGGGGAATGGTA+TGG | + | chr4_1:4378736-4378755 | Msa0530350:intron | 45.0% | |
| TCCATACCATTCCCCAAACT+AGG | - | chr4_1:4378740-4378759 | None:intergenic | 45.0% | |
| GGTTTACCACATCACTTGGT+TGG | + | chr4_1:4378951-4378970 | Msa0530350:CDS | 45.0% | |
| AACTCAGCTTGCCATGTTTG+GGG | + | chr4_1:4378976-4378995 | Msa0530350:CDS | 45.0% | |
| GATAAGTCCCTTGTGTTCCA+AGG | - | chr4_1:4379009-4379028 | None:intergenic | 45.0% | |
| ! | GCTTTGCTTGCATTTGGTGA+AGG | + | chr4_1:4379216-4379235 | Msa0530350:CDS | 45.0% |
| ! | TGCTTGCATTTGGTGAAGGT+TGG | + | chr4_1:4379220-4379239 | Msa0530350:CDS | 45.0% |
| CAGCTAGACATGGTTTAGAG+TGG | + | chr4_1:4379271-4379290 | Msa0530350:CDS | 45.0% | |
| ! | CTAGACATGGTTTAGAGTGG+TGG | + | chr4_1:4379274-4379293 | Msa0530350:CDS | 45.0% |
| !! | AGCTATTGGTTTGGCAACTG+AGG | + | chr4_1:4379335-4379354 | Msa0530350:CDS | 45.0% |
| TGAGAGTCACAAGCAGAGAA+TGG | + | chr4_1:4379371-4379390 | Msa0530350:CDS | 45.0% | |
| !! | CCGTTTTGAATGATGAGTGC+TGG | + | chr4_1:4379562-4379581 | Msa0530350:three_prime_UTR | 45.0% |
| AGCTTCTCCAATTGCAGCAT+TGG | - | chr4_1:4377582-4377601 | None:intergenic | 45.0% | |
| TTGTGGAGTTCTTGCTCTTC+AGG | + | chr4_1:4377913-4377932 | Msa0530350:CDS | 45.0% | |
| GCGGAGATTCAAAATGTGGT+TGG | - | chr4_1:4378090-4378109 | None:intergenic | 45.0% | |
| CATTCATGGAGACAGGACAT+TGG | + | chr4_1:4378126-4378145 | Msa0530350:intron | 45.0% | |
| CTTTCTCAGAATCGCAGAAC+TGG | - | chr4_1:4378281-4378300 | None:intergenic | 45.0% | |
| GACCCTCATAGTCCAATTGA+AGG | + | chr4_1:4378300-4378319 | Msa0530350:CDS | 45.0% | |
| TGTGGAGAACCAACCAATGT+TGG | + | chr4_1:4378612-4378631 | Msa0530350:CDS | 45.0% | |
| CATGGTGCATCCATTTGCTT+TGG | + | chr4_1:4378680-4378699 | Msa0530350:CDS | 45.0% | |
| AGAAGAGCTCCCAAAGCAAA+TGG | - | chr4_1:4378693-4378712 | None:intergenic | 45.0% | |
| GGAGCTCTTCTATATGCCAT+TGG | + | chr4_1:4378702-4378721 | Msa0530350:CDS | 45.0% | |
| GCTCTTCTATATGCCATTGG+TGG | + | chr4_1:4378705-4378724 | Msa0530350:CDS | 45.0% | |
| TCCTTTCCTAGTTTGGGGAA+TGG | + | chr4_1:4378731-4378750 | Msa0530350:CDS | 45.0% | |
| ACCATTCCCCAAACTAGGAA+AGG | - | chr4_1:4378735-4378754 | None:intergenic | 45.0% | |
| TCCTAGTTTGGGGAATGGTA+TGG | + | chr4_1:4378736-4378755 | Msa0530350:intron | 45.0% | |
| TCCATACCATTCCCCAAACT+AGG | - | chr4_1:4378740-4378759 | None:intergenic | 45.0% | |
| GGTTTACCACATCACTTGGT+TGG | + | chr4_1:4378951-4378970 | Msa0530350:CDS | 45.0% | |
| AACTCAGCTTGCCATGTTTG+GGG | + | chr4_1:4378976-4378995 | Msa0530350:CDS | 45.0% | |
| GATAAGTCCCTTGTGTTCCA+AGG | - | chr4_1:4379009-4379028 | None:intergenic | 45.0% | |
| ! | GCTTTGCTTGCATTTGGTGA+AGG | + | chr4_1:4379216-4379235 | Msa0530350:CDS | 45.0% |
| ! | TGCTTGCATTTGGTGAAGGT+TGG | + | chr4_1:4379220-4379239 | Msa0530350:CDS | 45.0% |
| CAGCTAGACATGGTTTAGAG+TGG | + | chr4_1:4379271-4379290 | Msa0530350:CDS | 45.0% | |
| ! | CTAGACATGGTTTAGAGTGG+TGG | + | chr4_1:4379274-4379293 | Msa0530350:CDS | 45.0% |
| !! | AGCTATTGGTTTGGCAACTG+AGG | + | chr4_1:4379335-4379354 | Msa0530350:CDS | 45.0% |
| TGAGAGTCACAAGCAGAGAA+TGG | + | chr4_1:4379371-4379390 | Msa0530350:CDS | 45.0% | |
| !! | CCGTTTTGAATGATGAGTGC+TGG | + | chr4_1:4379562-4379581 | Msa0530350:three_prime_UTR | 45.0% |
| TGGAGTTCTTGCTCTTCAGG+TGG | + | chr4_1:4377916-4377935 | Msa0530350:intron | 50.0% | |
| TCATGGAGACAGGACATTGG+TGG | + | chr4_1:4378129-4378148 | Msa0530350:intron | 50.0% | |
| TCTCAGAATCGCAGAACTGG+TGG | - | chr4_1:4378278-4378297 | None:intergenic | 50.0% | |
| ATATTGAGCGTGACGCATGC+AGG | + | chr4_1:4378912-4378931 | Msa0530350:intron | 50.0% | |
| TATTGAGCGTGACGCATGCA+GGG | + | chr4_1:4378913-4378932 | Msa0530350:intron | 50.0% | |
| ACTCAGCTTGCCATGTTTGG+GGG | + | chr4_1:4378977-4378996 | Msa0530350:CDS | 50.0% | |
| GAAGCAGCCTTGGAACACAA+GGG | + | chr4_1:4378999-4379018 | Msa0530350:CDS | 50.0% | |
| ! | TGGGTGGCTTTGCTTGCATT+TGG | + | chr4_1:4379210-4379229 | Msa0530350:CDS | 50.0% |
| GGTGGGAACTAGACATGACT+TGG | + | chr4_1:4379292-4379311 | Msa0530350:CDS | 50.0% | |
| CTCTGCTTGTGACTCTCACT+TGG | - | chr4_1:4379369-4379388 | None:intergenic | 50.0% | |
| TGGAGTTCTTGCTCTTCAGG+TGG | + | chr4_1:4377916-4377935 | Msa0530350:intron | 50.0% | |
| TCATGGAGACAGGACATTGG+TGG | + | chr4_1:4378129-4378148 | Msa0530350:intron | 50.0% | |
| TCTCAGAATCGCAGAACTGG+TGG | - | chr4_1:4378278-4378297 | None:intergenic | 50.0% | |
| ATATTGAGCGTGACGCATGC+AGG | + | chr4_1:4378912-4378931 | Msa0530350:intron | 50.0% | |
| TATTGAGCGTGACGCATGCA+GGG | + | chr4_1:4378913-4378932 | Msa0530350:intron | 50.0% | |
| ACTCAGCTTGCCATGTTTGG+GGG | + | chr4_1:4378977-4378996 | Msa0530350:CDS | 50.0% | |
| GAAGCAGCCTTGGAACACAA+GGG | + | chr4_1:4378999-4379018 | Msa0530350:CDS | 50.0% | |
| ! | TGGGTGGCTTTGCTTGCATT+TGG | + | chr4_1:4379210-4379229 | Msa0530350:CDS | 50.0% |
| GGTGGGAACTAGACATGACT+TGG | + | chr4_1:4379292-4379311 | Msa0530350:CDS | 50.0% | |
| CTCTGCTTGTGACTCTCACT+TGG | - | chr4_1:4379369-4379388 | None:intergenic | 50.0% | |
| !!! | GCCTGCTTTTTGGGTTGCTG+TGG | + | chr4_1:4377784-4377803 | Msa0530350:CDS | 55.0% |
| GCCACAGCAACCCAAAAAGC+AGG | - | chr4_1:4377788-4377807 | None:intergenic | 55.0% | |
| TGCAGGGTGTGAGGGTTGTT+TGG | + | chr4_1:4378929-4378948 | Msa0530350:intron | 55.0% | |
| GCAGGGTGTGAGGGTTGTTT+GGG | + | chr4_1:4378930-4378949 | Msa0530350:intron | 55.0% | |
| AAGGCTGCTTCCCCCAAACA+TGG | - | chr4_1:4378990-4379009 | None:intergenic | 55.0% | |
| ATGTTTGGGGGAAGCAGCCT+TGG | + | chr4_1:4378989-4379008 | Msa0530350:CDS | 55.0% | |
| GGAAGCAGCCTTGGAACACA+AGG | + | chr4_1:4378998-4379017 | Msa0530350:CDS | 55.0% | |
| !!! | GCCTGCTTTTTGGGTTGCTG+TGG | + | chr4_1:4377784-4377803 | Msa0530350:CDS | 55.0% |
| GCCACAGCAACCCAAAAAGC+AGG | - | chr4_1:4377788-4377807 | None:intergenic | 55.0% | |
| TGCAGGGTGTGAGGGTTGTT+TGG | + | chr4_1:4378929-4378948 | Msa0530350:intron | 55.0% | |
| GCAGGGTGTGAGGGTTGTTT+GGG | + | chr4_1:4378930-4378949 | Msa0530350:intron | 55.0% | |
| AAGGCTGCTTCCCCCAAACA+TGG | - | chr4_1:4378990-4379009 | None:intergenic | 55.0% | |
| ATGTTTGGGGGAAGCAGCCT+TGG | + | chr4_1:4378989-4379008 | Msa0530350:CDS | 55.0% | |
| GGAAGCAGCCTTGGAACACA+AGG | + | chr4_1:4378998-4379017 | Msa0530350:CDS | 55.0% | |
| GTGACGCATGCAGGGTGTGA+GGG | + | chr4_1:4378921-4378940 | Msa0530350:intron | 60.0% | |
| GTGACGCATGCAGGGTGTGA+GGG | + | chr4_1:4378921-4378940 | Msa0530350:intron | 60.0% | |
| CGTGACGCATGCAGGGTGTG+AGG | + | chr4_1:4378920-4378939 | Msa0530350:intron | 65.0% | |
| CGTGACGCATGCAGGGTGTG+AGG | + | chr4_1:4378920-4378939 | Msa0530350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 4377210 | 4379605 | 4377210 | ID=Msa0530350;Name=Msa0530350 |
| chr4_1 | mRNA | 4377210 | 4379605 | 4377210 | ID=Msa0530350-mRNA-1;Parent=Msa0530350;Name=Msa0530350-mRNA-1;_AED=0.06;_eAED=0.06;_QI=152|1|1|1|1|1|5|180|392 |
| chr4_1 | exon | 4377210 | 4377934 | 4377210 | ID=Msa0530350-mRNA-1:exon:1283;Parent=Msa0530350-mRNA-1 |
| chr4_1 | exon | 4378237 | 4378377 | 4378237 | ID=Msa0530350-mRNA-1:exon:1284;Parent=Msa0530350-mRNA-1 |
| chr4_1 | exon | 4378612 | 4378752 | 4378612 | ID=Msa0530350-mRNA-1:exon:1285;Parent=Msa0530350-mRNA-1 |
| chr4_1 | exon | 4378934 | 4379040 | 4378934 | ID=Msa0530350-mRNA-1:exon:1286;Parent=Msa0530350-mRNA-1 |
| chr4_1 | exon | 4379209 | 4379605 | 4379209 | ID=Msa0530350-mRNA-1:exon:1287;Parent=Msa0530350-mRNA-1 |
| chr4_1 | five_prime_UTR | 4377210 | 4377361 | 4377210 | ID=Msa0530350-mRNA-1:five_prime_utr;Parent=Msa0530350-mRNA-1 |
| chr4_1 | CDS | 4377362 | 4377934 | 4377362 | ID=Msa0530350-mRNA-1:cds;Parent=Msa0530350-mRNA-1 |
| chr4_1 | CDS | 4378237 | 4378377 | 4378237 | ID=Msa0530350-mRNA-1:cds;Parent=Msa0530350-mRNA-1 |
| chr4_1 | CDS | 4378612 | 4378752 | 4378612 | ID=Msa0530350-mRNA-1:cds;Parent=Msa0530350-mRNA-1 |
| chr4_1 | CDS | 4378934 | 4379040 | 4378934 | ID=Msa0530350-mRNA-1:cds;Parent=Msa0530350-mRNA-1 |
| chr4_1 | CDS | 4379209 | 4379425 | 4379209 | ID=Msa0530350-mRNA-1:cds;Parent=Msa0530350-mRNA-1 |
| chr4_1 | three_prime_UTR | 4379426 | 4379605 | 4379426 | ID=Msa0530350-mRNA-1:three_prime_utr;Parent=Msa0530350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
