Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173370 | XP_003604375.2 | 96.701 | 394 | 11 | 1 | 1 | 392 | 1 | 394 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173370 | sp|Q949X0|ADS3_ARATH | 66.292 | 356 | 118 | 2 | 33 | 387 | 17 | 371 | 2.92e-174 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0256290 | Msa1173370 | -0.803018 | 4.259268e-49 | -8.615850e-47 |
| Msa0530350 | Msa1173370 | 0.946097 | 8.829809e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173370 | MtrunA17_Chr4g0003241 | 96.701 | 394 | 11 | 1 | 1 | 392 | 1 | 394 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173370 | AT3G15850.1 | 66.292 | 356 | 118 | 2 | 33 | 387 | 17 | 371 | 2.97e-175 | 493 |
| Msa1173370 | AT1G06080.1 | 60.274 | 292 | 115 | 1 | 93 | 384 | 13 | 303 | 4.62e-136 | 391 |
| Msa1173370 | AT3G15870.1 | 52.235 | 358 | 161 | 4 | 33 | 384 | 7 | 360 | 2.59e-131 | 381 |
| Msa1173370 | AT1G06100.1 | 59.091 | 286 | 116 | 1 | 101 | 386 | 15 | 299 | 1.52e-126 | 367 |
| Msa1173370 | AT2G31360.1 | 56.338 | 284 | 123 | 1 | 101 | 384 | 23 | 305 | 8.18e-126 | 365 |
| Msa1173370 | AT2G31360.2 | 56.338 | 284 | 123 | 1 | 101 | 384 | 23 | 305 | 8.18e-126 | 365 |
| Msa1173370 | AT1G06120.1 | 57.951 | 283 | 118 | 1 | 102 | 384 | 16 | 297 | 3.11e-123 | 358 |
| Msa1173370 | AT1G06090.1 | 58.657 | 283 | 116 | 1 | 102 | 384 | 16 | 297 | 7.52e-123 | 357 |
| Msa1173370 | AT1G06350.1 | 56.446 | 287 | 124 | 1 | 98 | 384 | 13 | 298 | 1.57e-116 | 341 |
| Msa1173370 | AT1G06360.2 | 52.038 | 319 | 146 | 2 | 68 | 386 | 4 | 315 | 1.19e-115 | 340 |
| Msa1173370 | AT1G06360.1 | 56.491 | 285 | 123 | 1 | 102 | 386 | 16 | 299 | 6.59e-115 | 337 |
| Msa1173370 | AT1G06080.2 | 58.049 | 205 | 81 | 2 | 83 | 287 | 7 | 206 | 5.45e-83 | 253 |
Find 100 sgRNAs with CRISPR-Local
Find 339 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGTGGATTAAAATTAAA+AGG | 0.130162 | 8_1:+3788303 | None:intergenic |
| CTCTATCTTGTTTCACAAAA+AGG | 0.171911 | 8_1:-3788543 | Msa1173370:five_prime_UTR |
| AAGAAATATTCAAGCCATTT+AGG | 0.186946 | 8_1:+3787964 | None:intergenic |
| GTTGAAGTTACACACTTTAA+TGG | 0.220570 | 8_1:+3788359 | None:intergenic |
| GTCAAATTTCTTCAAGCTAT+TGG | 0.226600 | 8_1:-3786527 | Msa1173370:CDS |
| TTGTGGAGTTCTTGCTCTTC+AGG | 0.229228 | 8_1:-3787935 | Msa1173370:intron |
| GTGGCACTTTATGTTGTTAC+TGG | 0.230408 | 8_1:-3788045 | Msa1173370:CDS |
| TGGATTTCCTTTCCTAGTTT+GGG | 0.239391 | 8_1:-3787123 | Msa1173370:CDS |
| GTGGATTTCCTTTCCTAGTT+TGG | 0.240539 | 8_1:-3787124 | Msa1173370:CDS |
| TAACTCAGCTTGCCATGTTT+GGG | 0.241120 | 8_1:-3786873 | Msa1173370:CDS |
| TTCAATGACACTTCTTCTTC+TGG | 0.248991 | 8_1:+3788237 | None:intergenic |
| ATAGTCCAATTGAAGGATTT+TGG | 0.249494 | 8_1:-3787541 | Msa1173370:CDS |
| AAGATTTAAAATGGACCTAT+TGG | 0.251050 | 8_1:+3788407 | None:intergenic |
| GAATGGCCCAAGATTTAAAA+TGG | 0.268261 | 8_1:+3788398 | None:intergenic |
| TTAACTCAGCTTGCCATGTT+TGG | 0.273402 | 8_1:-3786874 | Msa1173370:CDS |
| GCTGGATTTGACTATGTATA+TGG | 0.279266 | 8_1:-3786268 | Msa1173370:three_prime_UTR |
| CATGGTGCATCCATTTGCTT+TGG | 0.292181 | 8_1:-3787168 | Msa1173370:CDS |
| AAATGGAATTCTTTAGATAT+TGG | 0.292659 | 8_1:-3788150 | Msa1173370:CDS |
| TGCAGGGTGTGAGGGTTGTT+TGG | 0.293341 | 8_1:-3786919 | Msa1173370:intron |
| GCAGGGTGTGAGGGTTGTTT+GGG | 0.310436 | 8_1:-3786918 | Msa1173370:intron |
| GAAGGGTTGTGAAGTGATTA+TGG | 0.333509 | 8_1:+3788448 | None:intergenic |
| GGGACTTATCTAGAAATAAT+TGG | 0.343426 | 8_1:-3786829 | Msa1173370:intron |
| TACCCTTTCTGCAATAGAAT+TGG | 0.350763 | 8_1:+3787490 | None:intergenic |
| TATGTTGTTACTGGATTGTT+TGG | 0.363981 | 8_1:-3788036 | Msa1173370:CDS |
| CAAGGGAAAATTTCTTGACT+TGG | 0.366370 | 8_1:+3788335 | None:intergenic |
| GCTAAATCCAATGCTGCAAT+TGG | 0.370671 | 8_1:-3788276 | Msa1173370:CDS |
| AGCTTCTCCAATTGCAGCAT+TGG | 0.383599 | 8_1:+3788269 | None:intergenic |
| ATGGTGCATCCATTTGCTTT+GGG | 0.383801 | 8_1:-3787167 | Msa1173370:CDS |
| AGAGTTTGAAGATGTCATAA+AGG | 0.387448 | 8_1:-3786347 | Msa1173370:three_prime_UTR |
| TTGCTCCATTCAATTTCAAT+TGG | 0.406084 | 8_1:-3788086 | Msa1173370:CDS |
| ATTTCTTCAAGCTATTGGTT+TGG | 0.408326 | 8_1:-3786522 | Msa1173370:CDS |
| AATCCTTCAATTGGACTATG+AGG | 0.411864 | 8_1:+3787545 | None:intergenic |
| TGGGTGGCTTTGCTTGCATT+TGG | 0.421777 | 8_1:-3786638 | Msa1173370:CDS |
| CTAAACCAAAATCCTTCAAT+TGG | 0.423073 | 8_1:+3787536 | None:intergenic |
| TTGGATTTAGCTAAAATTTG+TGG | 0.427810 | 8_1:+3788288 | None:intergenic |
| TGAGTACTCACCCAATCAAT+TGG | 0.428803 | 8_1:+3787605 | None:intergenic |
| GAATATTTCTTTGCTTATTG+TGG | 0.429478 | 8_1:-3787952 | Msa1173370:CDS |
| CTTTCTCAGAATCGCAGAAC+TGG | 0.431035 | 8_1:+3787570 | None:intergenic |
| TTTGTGGATTAAAATTAAAA+GGG | 0.433266 | 8_1:+3788304 | None:intergenic |
| GTTCAATACCACAATCCAAT+AGG | 0.441276 | 8_1:-3788422 | Msa1173370:CDS |
| GTTTGAACTTTAAATGTTGA+AGG | 0.443069 | 8_1:+3788567 | None:intergenic |
| CTCTGCTTGTGACTCTCACT+TGG | 0.443237 | 8_1:+3786482 | None:intergenic |
| GGAGCTCTTCTATATGCCAT+TGG | 0.445054 | 8_1:-3787146 | Msa1173370:CDS |
| TCCTTTCCTAGTTTGGGGAA+TGG | 0.448055 | 8_1:-3787117 | Msa1173370:intron |
| TGCTTGCATTTGGTGAAGGT+TGG | 0.449265 | 8_1:-3786628 | Msa1173370:CDS |
| TACCAATTCTATTGCAGAAA+GGG | 0.453900 | 8_1:-3787492 | Msa1173370:intron |
| GGTTTACCACATCACTTGGT+TGG | 0.457985 | 8_1:-3786897 | Msa1173370:CDS |
| TGCAGGGAAATCCAATTGAT+TGG | 0.459418 | 8_1:-3787616 | Msa1173370:intron |
| AGAAGAGCTCCCAAAGCAAA+TGG | 0.459628 | 8_1:+3787158 | None:intergenic |
| TGTGAAGTGATTATGGAGAA+TGG | 0.465895 | 8_1:+3788455 | None:intergenic |
| GACCCTCATAGTCCAATTGA+AGG | 0.472286 | 8_1:-3787548 | Msa1173370:CDS |
| GTGAAGTGATTATGGAGAAT+GGG | 0.472628 | 8_1:+3788456 | None:intergenic |
| TATCAAATAGCCAACTCATA+TGG | 0.475373 | 8_1:+3787513 | None:intergenic |
| ACTAGACATGACTTGGTACT+TGG | 0.482819 | 8_1:-3786549 | Msa1173370:CDS |
| GCAGGCCAATTGAAATTGAA+TGG | 0.491186 | 8_1:+3788081 | None:intergenic |
| TTGATTGGGTGAGTACTCAT+AGG | 0.493839 | 8_1:-3787601 | Msa1173370:CDS |
| GGAAGCAGCCTTGGAACACA+AGG | 0.493979 | 8_1:-3786850 | Msa1173370:CDS |
| ATTGTGGTATTGAACAATGA+AGG | 0.501935 | 8_1:+3788430 | None:intergenic |
| GCTCTTCTATATGCCATTGG+TGG | 0.503296 | 8_1:-3787143 | Msa1173370:CDS |
| GCTTTGCTTGCATTTGGTGA+AGG | 0.503642 | 8_1:-3786632 | Msa1173370:CDS |
| GAATAACAACCTCTTTCCAT+AGG | 0.506415 | 8_1:-3788014 | Msa1173370:CDS |
| TTCTATGAGAAAGATTCCTA+TGG | 0.507187 | 8_1:+3787998 | None:intergenic |
| AACTCAGCTTGCCATGTTTG+GGG | 0.507788 | 8_1:-3786872 | Msa1173370:CDS |
| TTTGGGTTTACCACATCACT+TGG | 0.509967 | 8_1:-3786901 | Msa1173370:CDS |
| TTTCTCTAAATCACCAACAT+TGG | 0.511987 | 8_1:+3787223 | None:intergenic |
| TCCATACCATTCCCCAAACT+AGG | 0.513826 | 8_1:+3787111 | None:intergenic |
| TCTAAATCACCAACATTGGT+TGG | 0.515691 | 8_1:+3787227 | None:intergenic |
| ATTTCTTAGAAGCACTTACA+TGG | 0.521255 | 8_1:-3787186 | Msa1173370:CDS |
| GATAAGTCCCTTGTGTTCCA+AGG | 0.521266 | 8_1:+3786842 | None:intergenic |
| ATACCAATTCTATTGCAGAA+AGG | 0.521711 | 8_1:-3787493 | Msa1173370:CDS |
| TGAGAGTCACAAGCAGAGAA+TGG | 0.529468 | 8_1:-3786477 | Msa1173370:CDS |
| GGATTTCCTTTCCTAGTTTG+GGG | 0.531672 | 8_1:-3787122 | Msa1173370:CDS |
| TTTGGTTTAGCCATATGAGT+TGG | 0.532263 | 8_1:-3787523 | Msa1173370:CDS |
| CTGGATTTGACTATGTATAT+GGG | 0.537772 | 8_1:-3786267 | Msa1173370:three_prime_UTR |
| AAAATGGACCTATTGGATTG+TGG | 0.551466 | 8_1:+3788414 | None:intergenic |
| ACCATTCCCCAAACTAGGAA+AGG | 0.556117 | 8_1:+3787116 | None:intergenic |
| CCAGCACTCATCATTCAAAA+CGG | 0.560525 | 8_1:+3786286 | None:intergenic |
| AGAAAGATTCCTATGGAAAG+AGG | 0.561888 | 8_1:+3788005 | None:intergenic |
| GCAGGGAAATCCAATTGATT+GGG | 0.562931 | 8_1:-3787615 | Msa1173370:intron |
| CTAGACATGGTTTAGAGTGG+TGG | 0.569731 | 8_1:-3786574 | Msa1173370:CDS |
| AGCTATTGGTTTGGCAACTG+AGG | 0.572454 | 8_1:-3786513 | Msa1173370:CDS |
| TGTTGGAATTGATTGTGATG+TGG | 0.573190 | 8_1:+3788638 | None:intergenic |
| GTGACGCATGCAGGGTGTGA+GGG | 0.582497 | 8_1:-3786927 | Msa1173370:intron |
| CGTGACGCATGCAGGGTGTG+AGG | 0.588784 | 8_1:-3786928 | Msa1173370:intron |
| TAGACATGGTTTAGAGTGGT+GGG | 0.589542 | 8_1:-3786573 | Msa1173370:CDS |
| TCTCAGAATCGCAGAACTGG+TGG | 0.590963 | 8_1:+3787573 | None:intergenic |
| TAAAATTTATTATAGGTGGG+TGG | 0.592680 | 8_1:-3786654 | Msa1173370:intron |
| ATCCTTCAATTGGACTATGA+GGG | 0.594859 | 8_1:+3787546 | None:intergenic |
| CAGCTAGACATGGTTTAGAG+TGG | 0.598600 | 8_1:-3786577 | Msa1173370:CDS |
| TTGTGGTATTGAACAATGAA+GGG | 0.610117 | 8_1:+3788431 | None:intergenic |
| GGTGGGAACTAGACATGACT+TGG | 0.620906 | 8_1:-3786556 | Msa1173370:CDS |
| ACTCAGCTTGCCATGTTTGG+GGG | 0.621443 | 8_1:-3786871 | Msa1173370:CDS |
| TTTGAGTATTCAGCTAGACA+TGG | 0.625596 | 8_1:-3786587 | Msa1173370:CDS |
| GGCGTTGAATAATAATGATG+TGG | 0.634818 | 8_1:-3786456 | Msa1173370:CDS |
| TGTGGAGAACCAACCAATGT+TGG | 0.643102 | 8_1:-3787236 | Msa1173370:CDS |
| TAGGAAAGGAAATCCACCAA+TGG | 0.664948 | 8_1:+3787130 | None:intergenic |
| AGTTAACCAACCAAGTGATG+TGG | 0.665748 | 8_1:+3786891 | None:intergenic |
| TAGCTGAATACTCAAATGCA+TGG | 0.678756 | 8_1:+3786594 | None:intergenic |
| CTGAATACTCAAATGCATGG+TGG | 0.689708 | 8_1:+3786597 | None:intergenic |
| GAAGCAGCCTTGGAACACAA+GGG | 0.709052 | 8_1:-3786849 | Msa1173370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAGTTTTTTTTTCT+TGG | - | chr8_1:3787017-3787036 | Msa1173370:intron | 10.0% |
| !!! | TTGCTAAATTTTAATTATTT+TGG | - | chr8_1:3787822-3787841 | Msa1173370:intron | 10.0% |
| !!! | TGTTATCTAAAATTTATTAT+AGG | - | chr8_1:3788242-3788261 | Msa1173370:CDS | 10.0% |
| !!! | TTTTTTTAGTTTTTTTTTCT+TGG | - | chr8_1:3787017-3787036 | Msa1173370:intron | 10.0% |
| !!! | TTGCTAAATTTTAATTATTT+TGG | - | chr8_1:3787822-3787841 | Msa1173370:intron | 10.0% |
| !!! | TGTTATCTAAAATTTATTAT+AGG | - | chr8_1:3788242-3788261 | Msa1173370:CDS | 10.0% |
| !! | AAAAAAAATGTACTTGTTTA+TGG | + | chr8_1:3786391-3786410 | None:intergenic | 15.0% |
| !!! | TTTGTGGATTAAAATTAAAA+GGG | + | chr8_1:3786602-3786621 | None:intergenic | 15.0% |
| !!! | ATTTGTGGATTAAAATTAAA+AGG | + | chr8_1:3786603-3786622 | None:intergenic | 15.0% |
| !! | TTATTAAATGTAGTTGAAAT+TGG | - | chr8_1:3787078-3787097 | Msa1173370:intron | 15.0% |
| !!! | TGTAGTTTTTACTAAAATTA+TGG | - | chr8_1:3787556-3787575 | Msa1173370:CDS | 15.0% |
| !!! | TATCTAAAATTTATTATAGG+TGG | - | chr8_1:3788245-3788264 | Msa1173370:CDS | 15.0% |
| !!! | ATCTAAAATTTATTATAGGT+GGG | - | chr8_1:3788246-3788265 | Msa1173370:CDS | 15.0% |
| !!! | AATACACTTTTTTTTATTGA+AGG | - | chr8_1:3788481-3788500 | Msa1173370:CDS | 15.0% |
| !! | AAAAAAAATGTACTTGTTTA+TGG | + | chr8_1:3786391-3786410 | None:intergenic | 15.0% |
| !!! | TTTGTGGATTAAAATTAAAA+GGG | + | chr8_1:3786602-3786621 | None:intergenic | 15.0% |
| !!! | ATTTGTGGATTAAAATTAAA+AGG | + | chr8_1:3786603-3786622 | None:intergenic | 15.0% |
| !! | TTATTAAATGTAGTTGAAAT+TGG | - | chr8_1:3787078-3787097 | Msa1173370:intron | 15.0% |
| !!! | TGTAGTTTTTACTAAAATTA+TGG | - | chr8_1:3787556-3787575 | Msa1173370:CDS | 15.0% |
| !!! | TATCTAAAATTTATTATAGG+TGG | - | chr8_1:3788245-3788264 | Msa1173370:CDS | 15.0% |
| !!! | ATCTAAAATTTATTATAGGT+GGG | - | chr8_1:3788246-3788265 | Msa1173370:CDS | 15.0% |
| !!! | AATACACTTTTTTTTATTGA+AGG | - | chr8_1:3788481-3788500 | Msa1173370:CDS | 15.0% |
| !! | AAATGGAATTCTTTAGATAT+TGG | - | chr8_1:3786753-3786772 | Msa1173370:intron | 20.0% |
| !!! | AGTTTTTACTAAAATTATGG+TGG | - | chr8_1:3787559-3787578 | Msa1173370:CDS | 20.0% |
| !!! | ATTTAGTTCTTGAAATTGTT+CGG | - | chr8_1:3787853-3787872 | Msa1173370:intron | 20.0% |
| !! | ATGTATTGAAACTTAATCTA+TGG | + | chr8_1:3787938-3787957 | None:intergenic | 20.0% |
| !!! | AAAAAAAAGTGTATTTCATG+TGG | + | chr8_1:3788476-3788495 | None:intergenic | 20.0% |
| !! | AAATGGAATTCTTTAGATAT+TGG | - | chr8_1:3786753-3786772 | Msa1173370:intron | 20.0% |
| !!! | AGTTTTTACTAAAATTATGG+TGG | - | chr8_1:3787559-3787578 | Msa1173370:CDS | 20.0% |
| !!! | ATTTAGTTCTTGAAATTGTT+CGG | - | chr8_1:3787853-3787872 | Msa1173370:intron | 20.0% |
| !! | ATGTATTGAAACTTAATCTA+TGG | + | chr8_1:3787938-3787957 | None:intergenic | 20.0% |
| !!! | AAAAAAAAGTGTATTTCATG+TGG | + | chr8_1:3788476-3788495 | None:intergenic | 20.0% |
| !! | TTTTATGTTTTGTGTTGTGT+TGG | + | chr8_1:3786285-3786304 | None:intergenic | 25.0% |
| !!! | TGAAGGTGATATTGTTTTTT+GGG | + | chr8_1:3786322-3786341 | None:intergenic | 25.0% |
| !!! | TTGAAGGTGATATTGTTTTT+TGG | + | chr8_1:3786323-3786342 | None:intergenic | 25.0% |
| ! | GTTTGAACTTTAAATGTTGA+AGG | + | chr8_1:3786339-3786358 | None:intergenic | 25.0% |
| !! | TTTTTGTGAAACAAGATAGA+GGG | + | chr8_1:3786361-3786380 | None:intergenic | 25.0% |
| !!! | GTACATTTTTTTTTTCTGCA+TGG | - | chr8_1:3786398-3786417 | Msa1173370:three_prime_UTR | 25.0% |
| !! | AAGATTTAAAATGGACCTAT+TGG | + | chr8_1:3786499-3786518 | None:intergenic | 25.0% |
| !! | AATAGGTCCATTTTAAATCT+TGG | - | chr8_1:3786498-3786517 | Msa1173370:CDS | 25.0% |
| !! | ATAGGTCCATTTTAAATCTT+GGG | - | chr8_1:3786499-3786518 | Msa1173370:CDS | 25.0% |
| !!! | TTAAAAGGGTTGTTTTTCAA+GGG | + | chr8_1:3786588-3786607 | None:intergenic | 25.0% |
| !!! | ATTAAAAGGGTTGTTTTTCA+AGG | + | chr8_1:3786589-3786608 | None:intergenic | 25.0% |
| ! | TTGGATTTAGCTAAAATTTG+TGG | + | chr8_1:3786618-3786637 | None:intergenic | 25.0% |
| !!! | AGAGAAAAAGAAGTGTTTTT+TGG | - | chr8_1:3786726-3786745 | Msa1173370:intron | 25.0% |
| !!! | GAGAAAAAGAAGTGTTTTTT+GGG | - | chr8_1:3786727-3786746 | Msa1173370:intron | 25.0% |
| ! | AAGAAATATTCAAGCCATTT+AGG | + | chr8_1:3786942-3786961 | None:intergenic | 25.0% |
| ! | GAATATTTCTTTGCTTATTG+TGG | - | chr8_1:3786951-3786970 | Msa1173370:intron | 25.0% |
| ! | GTCTATGTTGTTAAATTAGT+TGG | - | chr8_1:3787052-3787071 | Msa1173370:intron | 25.0% |
| ! | AAATGTAGTTGAAATTGGTT+AGG | - | chr8_1:3787083-3787102 | Msa1173370:intron | 25.0% |
| !!! | AAATGCACTAAAGTTTTGTA+TGG | + | chr8_1:3787471-3787490 | None:intergenic | 25.0% |
| ! | AAACTTAATCTATGGAATCA+AGG | + | chr8_1:3787930-3787949 | None:intergenic | 25.0% |
| !! | AATTTGTATGCGACTTTTTA+CGG | - | chr8_1:3788135-3788154 | Msa1173370:CDS | 25.0% |
| ! | TAAAATTTATTATAGGTGGG+TGG | - | chr8_1:3788249-3788268 | Msa1173370:CDS | 25.0% |
| !! | TTTTATGTTTTGTGTTGTGT+TGG | + | chr8_1:3786285-3786304 | None:intergenic | 25.0% |
| !!! | TGAAGGTGATATTGTTTTTT+GGG | + | chr8_1:3786322-3786341 | None:intergenic | 25.0% |
| !!! | TTGAAGGTGATATTGTTTTT+TGG | + | chr8_1:3786323-3786342 | None:intergenic | 25.0% |
| ! | GTTTGAACTTTAAATGTTGA+AGG | + | chr8_1:3786339-3786358 | None:intergenic | 25.0% |
| !! | TTTTTGTGAAACAAGATAGA+GGG | + | chr8_1:3786361-3786380 | None:intergenic | 25.0% |
| !!! | GTACATTTTTTTTTTCTGCA+TGG | - | chr8_1:3786398-3786417 | Msa1173370:three_prime_UTR | 25.0% |
| !! | AAGATTTAAAATGGACCTAT+TGG | + | chr8_1:3786499-3786518 | None:intergenic | 25.0% |
| !! | AATAGGTCCATTTTAAATCT+TGG | - | chr8_1:3786498-3786517 | Msa1173370:CDS | 25.0% |
| !! | ATAGGTCCATTTTAAATCTT+GGG | - | chr8_1:3786499-3786518 | Msa1173370:CDS | 25.0% |
| !!! | TTAAAAGGGTTGTTTTTCAA+GGG | + | chr8_1:3786588-3786607 | None:intergenic | 25.0% |
| !!! | ATTAAAAGGGTTGTTTTTCA+AGG | + | chr8_1:3786589-3786608 | None:intergenic | 25.0% |
| ! | TTGGATTTAGCTAAAATTTG+TGG | + | chr8_1:3786618-3786637 | None:intergenic | 25.0% |
| !!! | AGAGAAAAAGAAGTGTTTTT+TGG | - | chr8_1:3786726-3786745 | Msa1173370:intron | 25.0% |
| !!! | GAGAAAAAGAAGTGTTTTTT+GGG | - | chr8_1:3786727-3786746 | Msa1173370:intron | 25.0% |
| ! | AAGAAATATTCAAGCCATTT+AGG | + | chr8_1:3786942-3786961 | None:intergenic | 25.0% |
| ! | GAATATTTCTTTGCTTATTG+TGG | - | chr8_1:3786951-3786970 | Msa1173370:intron | 25.0% |
| ! | GTCTATGTTGTTAAATTAGT+TGG | - | chr8_1:3787052-3787071 | Msa1173370:intron | 25.0% |
| ! | AAATGTAGTTGAAATTGGTT+AGG | - | chr8_1:3787083-3787102 | Msa1173370:intron | 25.0% |
| !!! | AAATGCACTAAAGTTTTGTA+TGG | + | chr8_1:3787471-3787490 | None:intergenic | 25.0% |
| ! | AAACTTAATCTATGGAATCA+AGG | + | chr8_1:3787930-3787949 | None:intergenic | 25.0% |
| !! | AATTTGTATGCGACTTTTTA+CGG | - | chr8_1:3788135-3788154 | Msa1173370:CDS | 25.0% |
| ! | TAAAATTTATTATAGGTGGG+TGG | - | chr8_1:3788249-3788268 | Msa1173370:CDS | 25.0% |
| ! | CTTTTTGTGAAACAAGATAG+AGG | + | chr8_1:3786362-3786381 | None:intergenic | 30.0% |
| ! | CTCTATCTTGTTTCACAAAA+AGG | - | chr8_1:3786360-3786379 | Msa1173370:three_prime_UTR | 30.0% |
| ! | TTATGGAGAATGGGATTTTT+AGG | + | chr8_1:3786441-3786460 | None:intergenic | 30.0% |
| ! | TTGTGGTATTGAACAATGAA+GGG | + | chr8_1:3786475-3786494 | None:intergenic | 30.0% |
| ! | ATTGTGGTATTGAACAATGA+AGG | + | chr8_1:3786476-3786495 | None:intergenic | 30.0% |
| !!! | GCTTTTGCATTTTTTGAGAA+TGG | + | chr8_1:3786525-3786544 | None:intergenic | 30.0% |
| GTTGAAGTTACACACTTTAA+TGG | + | chr8_1:3786547-3786566 | None:intergenic | 30.0% | |
| !!! | AAAAAGAAGTGTTTTTTGGG+AGG | - | chr8_1:3786730-3786749 | Msa1173370:intron | 30.0% |
| TTGCTCCATTCAATTTCAAT+TGG | - | chr8_1:3786817-3786836 | Msa1173370:intron | 30.0% | |
| TATGTTGTTACTGGATTGTT+TGG | - | chr8_1:3786867-3786886 | Msa1173370:CDS | 30.0% | |
| TTCTATGAGAAAGATTCCTA+TGG | + | chr8_1:3786908-3786927 | None:intergenic | 30.0% | |
| !!! | GAAGTTTTAAGCTTCCTAAA+TGG | - | chr8_1:3786925-3786944 | Msa1173370:intron | 30.0% |
| !! | TCATACCATTCATGTTGTTT+TGG | - | chr8_1:3787256-3787275 | Msa1173370:intron | 30.0% |
| CAAAACCAAAACAACATGAA+TGG | + | chr8_1:3787264-3787283 | None:intergenic | 30.0% | |
| !!! | CATTCATGTTGTTTTGGTTT+TGG | - | chr8_1:3787262-3787281 | Msa1173370:intron | 30.0% |
| ! | ATAGTCCAATTGAAGGATTT+TGG | - | chr8_1:3787362-3787381 | Msa1173370:intron | 30.0% |
| CTAAACCAAAATCCTTCAAT+TGG | + | chr8_1:3787370-3787389 | None:intergenic | 30.0% | |
| TATCAAATAGCCAACTCATA+TGG | + | chr8_1:3787393-3787412 | None:intergenic | 30.0% | |
| ATACCAATTCTATTGCAGAA+AGG | - | chr8_1:3787410-3787429 | Msa1173370:intron | 30.0% | |
| TACCAATTCTATTGCAGAAA+GGG | - | chr8_1:3787411-3787430 | Msa1173370:intron | 30.0% | |
| ! | TTAGTGCATTTTGAATTGAC+AGG | - | chr8_1:3787480-3787499 | Msa1173370:intron | 30.0% |
| ! | TAGTGCATTTTGAATTGACA+GGG | - | chr8_1:3787481-3787500 | Msa1173370:intron | 30.0% |
| TATCACACAATCAATTCAAG+TGG | + | chr8_1:3787634-3787653 | None:intergenic | 30.0% | |
| TTTCTCTAAATCACCAACAT+TGG | + | chr8_1:3787683-3787702 | None:intergenic | 30.0% | |
| !! | ATTTCTTAGAAGCACTTACA+TGG | - | chr8_1:3787717-3787736 | Msa1173370:intron | 30.0% |
| GGGACTTATCTAGAAATAAT+TGG | - | chr8_1:3788074-3788093 | Msa1173370:CDS | 30.0% | |
| CTTAAAAATCATGCGAAAGA+TGG | + | chr8_1:3788178-3788197 | None:intergenic | 30.0% | |
| GTCAAATTTCTTCAAGCTAT+TGG | - | chr8_1:3788376-3788395 | Msa1173370:CDS | 30.0% | |
| ! | ATTTCTTCAAGCTATTGGTT+TGG | - | chr8_1:3788381-3788400 | Msa1173370:CDS | 30.0% |
| AGAGTTTGAAGATGTCATAA+AGG | - | chr8_1:3788556-3788575 | Msa1173370:five_prime_UTR | 30.0% | |
| CTGGATTTGACTATGTATAT+GGG | - | chr8_1:3788636-3788655 | Msa1173370:five_prime_UTR | 30.0% | |
| ! | CTTTTTGTGAAACAAGATAG+AGG | + | chr8_1:3786362-3786381 | None:intergenic | 30.0% |
| ! | CTCTATCTTGTTTCACAAAA+AGG | - | chr8_1:3786360-3786379 | Msa1173370:three_prime_UTR | 30.0% |
| ! | TTATGGAGAATGGGATTTTT+AGG | + | chr8_1:3786441-3786460 | None:intergenic | 30.0% |
| ! | TTGTGGTATTGAACAATGAA+GGG | + | chr8_1:3786475-3786494 | None:intergenic | 30.0% |
| ! | ATTGTGGTATTGAACAATGA+AGG | + | chr8_1:3786476-3786495 | None:intergenic | 30.0% |
| !!! | GCTTTTGCATTTTTTGAGAA+TGG | + | chr8_1:3786525-3786544 | None:intergenic | 30.0% |
| GTTGAAGTTACACACTTTAA+TGG | + | chr8_1:3786547-3786566 | None:intergenic | 30.0% | |
| !!! | AAAAAGAAGTGTTTTTTGGG+AGG | - | chr8_1:3786730-3786749 | Msa1173370:intron | 30.0% |
| TTGCTCCATTCAATTTCAAT+TGG | - | chr8_1:3786817-3786836 | Msa1173370:intron | 30.0% | |
| TATGTTGTTACTGGATTGTT+TGG | - | chr8_1:3786867-3786886 | Msa1173370:CDS | 30.0% | |
| TTCTATGAGAAAGATTCCTA+TGG | + | chr8_1:3786908-3786927 | None:intergenic | 30.0% | |
| !!! | GAAGTTTTAAGCTTCCTAAA+TGG | - | chr8_1:3786925-3786944 | Msa1173370:intron | 30.0% |
| !! | TCATACCATTCATGTTGTTT+TGG | - | chr8_1:3787256-3787275 | Msa1173370:intron | 30.0% |
| CAAAACCAAAACAACATGAA+TGG | + | chr8_1:3787264-3787283 | None:intergenic | 30.0% | |
| !!! | CATTCATGTTGTTTTGGTTT+TGG | - | chr8_1:3787262-3787281 | Msa1173370:intron | 30.0% |
| ! | ATAGTCCAATTGAAGGATTT+TGG | - | chr8_1:3787362-3787381 | Msa1173370:intron | 30.0% |
| CTAAACCAAAATCCTTCAAT+TGG | + | chr8_1:3787370-3787389 | None:intergenic | 30.0% | |
| TATCAAATAGCCAACTCATA+TGG | + | chr8_1:3787393-3787412 | None:intergenic | 30.0% | |
| ATACCAATTCTATTGCAGAA+AGG | - | chr8_1:3787410-3787429 | Msa1173370:intron | 30.0% | |
| TACCAATTCTATTGCAGAAA+GGG | - | chr8_1:3787411-3787430 | Msa1173370:intron | 30.0% | |
| ! | TTAGTGCATTTTGAATTGAC+AGG | - | chr8_1:3787480-3787499 | Msa1173370:intron | 30.0% |
| ! | TAGTGCATTTTGAATTGACA+GGG | - | chr8_1:3787481-3787500 | Msa1173370:intron | 30.0% |
| TATCACACAATCAATTCAAG+TGG | + | chr8_1:3787634-3787653 | None:intergenic | 30.0% | |
| TTTCTCTAAATCACCAACAT+TGG | + | chr8_1:3787683-3787702 | None:intergenic | 30.0% | |
| !! | ATTTCTTAGAAGCACTTACA+TGG | - | chr8_1:3787717-3787736 | Msa1173370:intron | 30.0% |
| GGGACTTATCTAGAAATAAT+TGG | - | chr8_1:3788074-3788093 | Msa1173370:CDS | 30.0% | |
| CTTAAAAATCATGCGAAAGA+TGG | + | chr8_1:3788178-3788197 | None:intergenic | 30.0% | |
| GTCAAATTTCTTCAAGCTAT+TGG | - | chr8_1:3788376-3788395 | Msa1173370:CDS | 30.0% | |
| ! | ATTTCTTCAAGCTATTGGTT+TGG | - | chr8_1:3788381-3788400 | Msa1173370:CDS | 30.0% |
| AGAGTTTGAAGATGTCATAA+AGG | - | chr8_1:3788556-3788575 | Msa1173370:five_prime_UTR | 30.0% | |
| CTGGATTTGACTATGTATAT+GGG | - | chr8_1:3788636-3788655 | Msa1173370:five_prime_UTR | 30.0% | |
| TGTTGGAATTGATTGTGATG+TGG | + | chr8_1:3786268-3786287 | None:intergenic | 35.0% | |
| GTGAAGTGATTATGGAGAAT+GGG | + | chr8_1:3786450-3786469 | None:intergenic | 35.0% | |
| TGTGAAGTGATTATGGAGAA+TGG | + | chr8_1:3786451-3786470 | None:intergenic | 35.0% | |
| GTTCAATACCACAATCCAAT+AGG | - | chr8_1:3786481-3786500 | Msa1173370:CDS | 35.0% | |
| AAAATGGACCTATTGGATTG+TGG | + | chr8_1:3786492-3786511 | None:intergenic | 35.0% | |
| GAATGGCCCAAGATTTAAAA+TGG | + | chr8_1:3786508-3786527 | None:intergenic | 35.0% | |
| CAAGGGAAAATTTCTTGACT+TGG | + | chr8_1:3786571-3786590 | None:intergenic | 35.0% | |
| TTCAATGACACTTCTTCTTC+TGG | + | chr8_1:3786669-3786688 | None:intergenic | 35.0% | |
| !!! | AAGTGTTTTTTGGGAGGAAA+TGG | - | chr8_1:3786736-3786755 | Msa1173370:intron | 35.0% |
| !! | ATTTCAATTGGCCTGCTTTT+TGG | - | chr8_1:3786829-3786848 | Msa1173370:intron | 35.0% |
| !!! | TTTCAATTGGCCTGCTTTTT+GGG | - | chr8_1:3786830-3786849 | Msa1173370:CDS | 35.0% |
| GAATAACAACCTCTTTCCAT+AGG | - | chr8_1:3786889-3786908 | Msa1173370:CDS | 35.0% | |
| AGAAAGATTCCTATGGAAAG+AGG | + | chr8_1:3786901-3786920 | None:intergenic | 35.0% | |
| !! | TTGGGATTTTCTAGCATTCA+TGG | - | chr8_1:3787167-3787186 | Msa1173370:CDS | 35.0% |
| ATCCTTCAATTGGACTATGA+GGG | + | chr8_1:3787360-3787379 | None:intergenic | 35.0% | |
| AATCCTTCAATTGGACTATG+AGG | + | chr8_1:3787361-3787380 | None:intergenic | 35.0% | |
| ! | TTTGGTTTAGCCATATGAGT+TGG | - | chr8_1:3787380-3787399 | Msa1173370:intron | 35.0% |
| TACCCTTTCTGCAATAGAAT+TGG | + | chr8_1:3787416-3787435 | None:intergenic | 35.0% | |
| AAAATAGTGTCACGATGACT+CGG | - | chr8_1:3787512-3787531 | Msa1173370:CDS | 35.0% | |
| TCTAAATCACCAACATTGGT+TGG | + | chr8_1:3787679-3787698 | None:intergenic | 35.0% | |
| TGGATTTCCTTTCCTAGTTT+GGG | - | chr8_1:3787780-3787799 | Msa1173370:intron | 35.0% | |
| GTTCTTGAAATTGTTCGGTA+AGG | - | chr8_1:3787858-3787877 | Msa1173370:intron | 35.0% | |
| TAGCTGAATACTCAAATGCA+TGG | + | chr8_1:3788312-3788331 | None:intergenic | 35.0% | |
| TTTGAGTATTCAGCTAGACA+TGG | - | chr8_1:3788316-3788335 | Msa1173370:CDS | 35.0% | |
| ! | GGCGTTGAATAATAATGATG+TGG | - | chr8_1:3788447-3788466 | Msa1173370:CDS | 35.0% |
| ! | GATGTCATAAAGGTTTTCGT+AGG | - | chr8_1:3788566-3788585 | Msa1173370:five_prime_UTR | 35.0% |
| GCTGGATTTGACTATGTATA+TGG | - | chr8_1:3788635-3788654 | Msa1173370:five_prime_UTR | 35.0% | |
| GTTGGAATTGATTGTGATGT+GGG | + | chr8_1:3786267-3786286 | None:intergenic | 35.0% | |
| TGTTGGAATTGATTGTGATG+TGG | + | chr8_1:3786268-3786287 | None:intergenic | 35.0% | |
| GTGAAGTGATTATGGAGAAT+GGG | + | chr8_1:3786450-3786469 | None:intergenic | 35.0% | |
| TGTGAAGTGATTATGGAGAA+TGG | + | chr8_1:3786451-3786470 | None:intergenic | 35.0% | |
| GTTCAATACCACAATCCAAT+AGG | - | chr8_1:3786481-3786500 | Msa1173370:CDS | 35.0% | |
| AAAATGGACCTATTGGATTG+TGG | + | chr8_1:3786492-3786511 | None:intergenic | 35.0% | |
| GAATGGCCCAAGATTTAAAA+TGG | + | chr8_1:3786508-3786527 | None:intergenic | 35.0% | |
| CAAGGGAAAATTTCTTGACT+TGG | + | chr8_1:3786571-3786590 | None:intergenic | 35.0% | |
| TTCAATGACACTTCTTCTTC+TGG | + | chr8_1:3786669-3786688 | None:intergenic | 35.0% | |
| !!! | AAGTGTTTTTTGGGAGGAAA+TGG | - | chr8_1:3786736-3786755 | Msa1173370:intron | 35.0% |
| !! | ATTTCAATTGGCCTGCTTTT+TGG | - | chr8_1:3786829-3786848 | Msa1173370:intron | 35.0% |
| !!! | TTTCAATTGGCCTGCTTTTT+GGG | - | chr8_1:3786830-3786849 | Msa1173370:CDS | 35.0% |
| GAATAACAACCTCTTTCCAT+AGG | - | chr8_1:3786889-3786908 | Msa1173370:CDS | 35.0% | |
| AGAAAGATTCCTATGGAAAG+AGG | + | chr8_1:3786901-3786920 | None:intergenic | 35.0% | |
| !! | TTGGGATTTTCTAGCATTCA+TGG | - | chr8_1:3787167-3787186 | Msa1173370:CDS | 35.0% |
| ATCCTTCAATTGGACTATGA+GGG | + | chr8_1:3787360-3787379 | None:intergenic | 35.0% | |
| AATCCTTCAATTGGACTATG+AGG | + | chr8_1:3787361-3787380 | None:intergenic | 35.0% | |
| ! | TTTGGTTTAGCCATATGAGT+TGG | - | chr8_1:3787380-3787399 | Msa1173370:intron | 35.0% |
| TACCCTTTCTGCAATAGAAT+TGG | + | chr8_1:3787416-3787435 | None:intergenic | 35.0% | |
| AAAATAGTGTCACGATGACT+CGG | - | chr8_1:3787512-3787531 | Msa1173370:CDS | 35.0% | |
| TCTAAATCACCAACATTGGT+TGG | + | chr8_1:3787679-3787698 | None:intergenic | 35.0% | |
| TGGATTTCCTTTCCTAGTTT+GGG | - | chr8_1:3787780-3787799 | Msa1173370:intron | 35.0% | |
| GTTCTTGAAATTGTTCGGTA+AGG | - | chr8_1:3787858-3787877 | Msa1173370:intron | 35.0% | |
| TAGCTGAATACTCAAATGCA+TGG | + | chr8_1:3788312-3788331 | None:intergenic | 35.0% | |
| TTTGAGTATTCAGCTAGACA+TGG | - | chr8_1:3788316-3788335 | Msa1173370:CDS | 35.0% | |
| ! | GGCGTTGAATAATAATGATG+TGG | - | chr8_1:3788447-3788466 | Msa1173370:CDS | 35.0% |
| ! | GATGTCATAAAGGTTTTCGT+AGG | - | chr8_1:3788566-3788585 | Msa1173370:five_prime_UTR | 35.0% |
| GCTGGATTTGACTATGTATA+TGG | - | chr8_1:3788635-3788654 | Msa1173370:five_prime_UTR | 35.0% | |
| GAAGGGTTGTGAAGTGATTA+TGG | + | chr8_1:3786458-3786477 | None:intergenic | 40.0% | |
| GCTAAATCCAATGCTGCAAT+TGG | - | chr8_1:3786627-3786646 | Msa1173370:CDS | 40.0% | |
| GCAGGCCAATTGAAATTGAA+TGG | + | chr8_1:3786825-3786844 | None:intergenic | 40.0% | |
| GTGGCACTTTATGTTGTTAC+TGG | - | chr8_1:3786858-3786877 | Msa1173370:CDS | 40.0% | |
| CGGAGATTCAAAATGTGGTT+GGG | + | chr8_1:3787144-3787163 | None:intergenic | 40.0% | |
| AACTGCGGAGATTCAAAATG+TGG | + | chr8_1:3787149-3787168 | None:intergenic | 40.0% | |
| ! | ACATTTTGAATCTCCGCAGT+TGG | - | chr8_1:3787148-3787167 | Msa1173370:CDS | 40.0% |
| ! | CATTTTGAATCTCCGCAGTT+GGG | - | chr8_1:3787149-3787168 | Msa1173370:CDS | 40.0% |
| ATGCTAGAAAATCCCAACTG+CGG | + | chr8_1:3787164-3787183 | None:intergenic | 40.0% | |
| ! | TTTCTAGCATTCATGGAGAC+AGG | - | chr8_1:3787174-3787193 | Msa1173370:CDS | 40.0% |
| !!! | TTGTTTTGGTTTTGGTGTGC+AGG | - | chr8_1:3787270-3787289 | Msa1173370:intron | 40.0% |
| !!! | TGTTTTGGTTTTGGTGTGCA+GGG | - | chr8_1:3787271-3787290 | Msa1173370:intron | 40.0% |
| TGCAGGGAAATCCAATTGAT+TGG | - | chr8_1:3787287-3787306 | Msa1173370:intron | 40.0% | |
| GCAGGGAAATCCAATTGATT+GGG | - | chr8_1:3787288-3787307 | Msa1173370:intron | 40.0% | |
| TGAGTACTCACCCAATCAAT+TGG | + | chr8_1:3787301-3787320 | None:intergenic | 40.0% | |
| TTGATTGGGTGAGTACTCAT+AGG | - | chr8_1:3787302-3787321 | Msa1173370:intron | 40.0% | |
| TGATATGTATGTGTGCAGTG+TGG | - | chr8_1:3787649-3787668 | Msa1173370:intron | 40.0% | |
| ATGGTGCATCCATTTGCTTT+GGG | - | chr8_1:3787736-3787755 | Msa1173370:intron | 40.0% | |
| TAGGAAAGGAAATCCACCAA+TGG | + | chr8_1:3787776-3787795 | None:intergenic | 40.0% | |
| GTGGATTTCCTTTCCTAGTT+TGG | - | chr8_1:3787779-3787798 | Msa1173370:intron | 40.0% | |
| GGATTTCCTTTCCTAGTTTG+GGG | - | chr8_1:3787781-3787800 | Msa1173370:intron | 40.0% | |
| ! | TTTGGGTTTACCACATCACT+TGG | - | chr8_1:3788002-3788021 | Msa1173370:CDS | 40.0% |
| AGTTAACCAACCAAGTGATG+TGG | + | chr8_1:3788015-3788034 | None:intergenic | 40.0% | |
| TTAACTCAGCTTGCCATGTT+TGG | - | chr8_1:3788029-3788048 | Msa1173370:CDS | 40.0% | |
| TAACTCAGCTTGCCATGTTT+GGG | - | chr8_1:3788030-3788049 | Msa1173370:CDS | 40.0% | |
| CTGAATACTCAAATGCATGG+TGG | + | chr8_1:3788309-3788328 | None:intergenic | 40.0% | |
| ! | TAGACATGGTTTAGAGTGGT+GGG | - | chr8_1:3788330-3788349 | Msa1173370:CDS | 40.0% |
| !! | ACTAGACATGACTTGGTACT+TGG | - | chr8_1:3788354-3788373 | Msa1173370:CDS | 40.0% |
| CCAGCACTCATCATTCAAAA+CGG | + | chr8_1:3788620-3788639 | None:intergenic | 40.0% | |
| GAAGGGTTGTGAAGTGATTA+TGG | + | chr8_1:3786458-3786477 | None:intergenic | 40.0% | |
| GCTAAATCCAATGCTGCAAT+TGG | - | chr8_1:3786627-3786646 | Msa1173370:CDS | 40.0% | |
| GCAGGCCAATTGAAATTGAA+TGG | + | chr8_1:3786825-3786844 | None:intergenic | 40.0% | |
| GTGGCACTTTATGTTGTTAC+TGG | - | chr8_1:3786858-3786877 | Msa1173370:CDS | 40.0% | |
| CGGAGATTCAAAATGTGGTT+GGG | + | chr8_1:3787144-3787163 | None:intergenic | 40.0% | |
| AACTGCGGAGATTCAAAATG+TGG | + | chr8_1:3787149-3787168 | None:intergenic | 40.0% | |
| ! | ACATTTTGAATCTCCGCAGT+TGG | - | chr8_1:3787148-3787167 | Msa1173370:CDS | 40.0% |
| ! | CATTTTGAATCTCCGCAGTT+GGG | - | chr8_1:3787149-3787168 | Msa1173370:CDS | 40.0% |
| ATGCTAGAAAATCCCAACTG+CGG | + | chr8_1:3787164-3787183 | None:intergenic | 40.0% | |
| ! | TTTCTAGCATTCATGGAGAC+AGG | - | chr8_1:3787174-3787193 | Msa1173370:CDS | 40.0% |
| !!! | TTGTTTTGGTTTTGGTGTGC+AGG | - | chr8_1:3787270-3787289 | Msa1173370:intron | 40.0% |
| !!! | TGTTTTGGTTTTGGTGTGCA+GGG | - | chr8_1:3787271-3787290 | Msa1173370:intron | 40.0% |
| TGCAGGGAAATCCAATTGAT+TGG | - | chr8_1:3787287-3787306 | Msa1173370:intron | 40.0% | |
| GCAGGGAAATCCAATTGATT+GGG | - | chr8_1:3787288-3787307 | Msa1173370:intron | 40.0% | |
| TGAGTACTCACCCAATCAAT+TGG | + | chr8_1:3787301-3787320 | None:intergenic | 40.0% | |
| TTGATTGGGTGAGTACTCAT+AGG | - | chr8_1:3787302-3787321 | Msa1173370:intron | 40.0% | |
| TGATATGTATGTGTGCAGTG+TGG | - | chr8_1:3787649-3787668 | Msa1173370:intron | 40.0% | |
| ATGGTGCATCCATTTGCTTT+GGG | - | chr8_1:3787736-3787755 | Msa1173370:intron | 40.0% | |
| TAGGAAAGGAAATCCACCAA+TGG | + | chr8_1:3787776-3787795 | None:intergenic | 40.0% | |
| GTGGATTTCCTTTCCTAGTT+TGG | - | chr8_1:3787779-3787798 | Msa1173370:intron | 40.0% | |
| GGATTTCCTTTCCTAGTTTG+GGG | - | chr8_1:3787781-3787800 | Msa1173370:intron | 40.0% | |
| ! | TTTGGGTTTACCACATCACT+TGG | - | chr8_1:3788002-3788021 | Msa1173370:CDS | 40.0% |
| AGTTAACCAACCAAGTGATG+TGG | + | chr8_1:3788015-3788034 | None:intergenic | 40.0% | |
| TTAACTCAGCTTGCCATGTT+TGG | - | chr8_1:3788029-3788048 | Msa1173370:CDS | 40.0% | |
| TAACTCAGCTTGCCATGTTT+GGG | - | chr8_1:3788030-3788049 | Msa1173370:CDS | 40.0% | |
| CTGAATACTCAAATGCATGG+TGG | + | chr8_1:3788309-3788328 | None:intergenic | 40.0% | |
| ! | TAGACATGGTTTAGAGTGGT+GGG | - | chr8_1:3788330-3788349 | Msa1173370:CDS | 40.0% |
| !! | ACTAGACATGACTTGGTACT+TGG | - | chr8_1:3788354-3788373 | Msa1173370:CDS | 40.0% |
| CCAGCACTCATCATTCAAAA+CGG | + | chr8_1:3788620-3788639 | None:intergenic | 40.0% | |
| AGCTTCTCCAATTGCAGCAT+TGG | + | chr8_1:3786637-3786656 | None:intergenic | 45.0% | |
| TTGTGGAGTTCTTGCTCTTC+AGG | - | chr8_1:3786968-3786987 | Msa1173370:intron | 45.0% | |
| GCGGAGATTCAAAATGTGGT+TGG | + | chr8_1:3787145-3787164 | None:intergenic | 45.0% | |
| CATTCATGGAGACAGGACAT+TGG | - | chr8_1:3787181-3787200 | Msa1173370:CDS | 45.0% | |
| CTTTCTCAGAATCGCAGAAC+TGG | + | chr8_1:3787336-3787355 | None:intergenic | 45.0% | |
| GACCCTCATAGTCCAATTGA+AGG | - | chr8_1:3787355-3787374 | Msa1173370:intron | 45.0% | |
| TGTGGAGAACCAACCAATGT+TGG | - | chr8_1:3787667-3787686 | Msa1173370:intron | 45.0% | |
| CATGGTGCATCCATTTGCTT+TGG | - | chr8_1:3787735-3787754 | Msa1173370:intron | 45.0% | |
| AGAAGAGCTCCCAAAGCAAA+TGG | + | chr8_1:3787748-3787767 | None:intergenic | 45.0% | |
| GGAGCTCTTCTATATGCCAT+TGG | - | chr8_1:3787757-3787776 | Msa1173370:intron | 45.0% | |
| GCTCTTCTATATGCCATTGG+TGG | - | chr8_1:3787760-3787779 | Msa1173370:intron | 45.0% | |
| TCCTTTCCTAGTTTGGGGAA+TGG | - | chr8_1:3787786-3787805 | Msa1173370:intron | 45.0% | |
| ACCATTCCCCAAACTAGGAA+AGG | + | chr8_1:3787790-3787809 | None:intergenic | 45.0% | |
| TCCTAGTTTGGGGAATGGTA+TGG | - | chr8_1:3787791-3787810 | Msa1173370:intron | 45.0% | |
| TCCATACCATTCCCCAAACT+AGG | + | chr8_1:3787795-3787814 | None:intergenic | 45.0% | |
| GGTTTACCACATCACTTGGT+TGG | - | chr8_1:3788006-3788025 | Msa1173370:CDS | 45.0% | |
| AACTCAGCTTGCCATGTTTG+GGG | - | chr8_1:3788031-3788050 | Msa1173370:CDS | 45.0% | |
| GATAAGTCCCTTGTGTTCCA+AGG | + | chr8_1:3788064-3788083 | None:intergenic | 45.0% | |
| ! | GCTTTGCTTGCATTTGGTGA+AGG | - | chr8_1:3788271-3788290 | Msa1173370:CDS | 45.0% |
| ! | TGCTTGCATTTGGTGAAGGT+TGG | - | chr8_1:3788275-3788294 | Msa1173370:CDS | 45.0% |
| CAGCTAGACATGGTTTAGAG+TGG | - | chr8_1:3788326-3788345 | Msa1173370:CDS | 45.0% | |
| ! | CTAGACATGGTTTAGAGTGG+TGG | - | chr8_1:3788329-3788348 | Msa1173370:CDS | 45.0% |
| !! | AGCTATTGGTTTGGCAACTG+AGG | - | chr8_1:3788390-3788409 | Msa1173370:CDS | 45.0% |
| TGAGAGTCACAAGCAGAGAA+TGG | - | chr8_1:3788426-3788445 | Msa1173370:CDS | 45.0% | |
| !! | CCGTTTTGAATGATGAGTGC+TGG | - | chr8_1:3788617-3788636 | Msa1173370:five_prime_UTR | 45.0% |
| AGCTTCTCCAATTGCAGCAT+TGG | + | chr8_1:3786637-3786656 | None:intergenic | 45.0% | |
| TTGTGGAGTTCTTGCTCTTC+AGG | - | chr8_1:3786968-3786987 | Msa1173370:intron | 45.0% | |
| GCGGAGATTCAAAATGTGGT+TGG | + | chr8_1:3787145-3787164 | None:intergenic | 45.0% | |
| CATTCATGGAGACAGGACAT+TGG | - | chr8_1:3787181-3787200 | Msa1173370:CDS | 45.0% | |
| CTTTCTCAGAATCGCAGAAC+TGG | + | chr8_1:3787336-3787355 | None:intergenic | 45.0% | |
| GACCCTCATAGTCCAATTGA+AGG | - | chr8_1:3787355-3787374 | Msa1173370:intron | 45.0% | |
| TGTGGAGAACCAACCAATGT+TGG | - | chr8_1:3787667-3787686 | Msa1173370:intron | 45.0% | |
| CATGGTGCATCCATTTGCTT+TGG | - | chr8_1:3787735-3787754 | Msa1173370:intron | 45.0% | |
| AGAAGAGCTCCCAAAGCAAA+TGG | + | chr8_1:3787748-3787767 | None:intergenic | 45.0% | |
| GGAGCTCTTCTATATGCCAT+TGG | - | chr8_1:3787757-3787776 | Msa1173370:intron | 45.0% | |
| GCTCTTCTATATGCCATTGG+TGG | - | chr8_1:3787760-3787779 | Msa1173370:intron | 45.0% | |
| TCCTTTCCTAGTTTGGGGAA+TGG | - | chr8_1:3787786-3787805 | Msa1173370:intron | 45.0% | |
| ACCATTCCCCAAACTAGGAA+AGG | + | chr8_1:3787790-3787809 | None:intergenic | 45.0% | |
| TCCTAGTTTGGGGAATGGTA+TGG | - | chr8_1:3787791-3787810 | Msa1173370:intron | 45.0% | |
| TCCATACCATTCCCCAAACT+AGG | + | chr8_1:3787795-3787814 | None:intergenic | 45.0% | |
| GGTTTACCACATCACTTGGT+TGG | - | chr8_1:3788006-3788025 | Msa1173370:CDS | 45.0% | |
| AACTCAGCTTGCCATGTTTG+GGG | - | chr8_1:3788031-3788050 | Msa1173370:CDS | 45.0% | |
| GATAAGTCCCTTGTGTTCCA+AGG | + | chr8_1:3788064-3788083 | None:intergenic | 45.0% | |
| ! | GCTTTGCTTGCATTTGGTGA+AGG | - | chr8_1:3788271-3788290 | Msa1173370:CDS | 45.0% |
| ! | TGCTTGCATTTGGTGAAGGT+TGG | - | chr8_1:3788275-3788294 | Msa1173370:CDS | 45.0% |
| CAGCTAGACATGGTTTAGAG+TGG | - | chr8_1:3788326-3788345 | Msa1173370:CDS | 45.0% | |
| ! | CTAGACATGGTTTAGAGTGG+TGG | - | chr8_1:3788329-3788348 | Msa1173370:CDS | 45.0% |
| !! | AGCTATTGGTTTGGCAACTG+AGG | - | chr8_1:3788390-3788409 | Msa1173370:CDS | 45.0% |
| TGAGAGTCACAAGCAGAGAA+TGG | - | chr8_1:3788426-3788445 | Msa1173370:CDS | 45.0% | |
| !! | CCGTTTTGAATGATGAGTGC+TGG | - | chr8_1:3788617-3788636 | Msa1173370:five_prime_UTR | 45.0% |
| TGGAGTTCTTGCTCTTCAGG+TGG | - | chr8_1:3786971-3786990 | Msa1173370:intron | 50.0% | |
| TCATGGAGACAGGACATTGG+TGG | - | chr8_1:3787184-3787203 | Msa1173370:CDS | 50.0% | |
| TCTCAGAATCGCAGAACTGG+TGG | + | chr8_1:3787333-3787352 | None:intergenic | 50.0% | |
| ATATTGAGCGTGACGCATGC+AGG | - | chr8_1:3787967-3787986 | Msa1173370:CDS | 50.0% | |
| TATTGAGCGTGACGCATGCA+GGG | - | chr8_1:3787968-3787987 | Msa1173370:CDS | 50.0% | |
| ACTCAGCTTGCCATGTTTGG+GGG | - | chr8_1:3788032-3788051 | Msa1173370:CDS | 50.0% | |
| GAAGCAGCCTTGGAACACAA+GGG | - | chr8_1:3788054-3788073 | Msa1173370:CDS | 50.0% | |
| ! | TGGGTGGCTTTGCTTGCATT+TGG | - | chr8_1:3788265-3788284 | Msa1173370:CDS | 50.0% |
| GGTGGGAACTAGACATGACT+TGG | - | chr8_1:3788347-3788366 | Msa1173370:CDS | 50.0% | |
| CTCTGCTTGTGACTCTCACT+TGG | + | chr8_1:3788424-3788443 | None:intergenic | 50.0% | |
| TGGAGTTCTTGCTCTTCAGG+TGG | - | chr8_1:3786971-3786990 | Msa1173370:intron | 50.0% | |
| TCATGGAGACAGGACATTGG+TGG | - | chr8_1:3787184-3787203 | Msa1173370:CDS | 50.0% | |
| TCTCAGAATCGCAGAACTGG+TGG | + | chr8_1:3787333-3787352 | None:intergenic | 50.0% | |
| ATATTGAGCGTGACGCATGC+AGG | - | chr8_1:3787967-3787986 | Msa1173370:CDS | 50.0% | |
| TATTGAGCGTGACGCATGCA+GGG | - | chr8_1:3787968-3787987 | Msa1173370:CDS | 50.0% | |
| ACTCAGCTTGCCATGTTTGG+GGG | - | chr8_1:3788032-3788051 | Msa1173370:CDS | 50.0% | |
| GAAGCAGCCTTGGAACACAA+GGG | - | chr8_1:3788054-3788073 | Msa1173370:CDS | 50.0% | |
| ! | TGGGTGGCTTTGCTTGCATT+TGG | - | chr8_1:3788265-3788284 | Msa1173370:CDS | 50.0% |
| GGTGGGAACTAGACATGACT+TGG | - | chr8_1:3788347-3788366 | Msa1173370:CDS | 50.0% | |
| CTCTGCTTGTGACTCTCACT+TGG | + | chr8_1:3788424-3788443 | None:intergenic | 50.0% | |
| !!! | GCCTGCTTTTTGGGTTGCTG+TGG | - | chr8_1:3786839-3786858 | Msa1173370:CDS | 55.0% |
| GCCACAGCAACCCAAAAAGC+AGG | + | chr8_1:3786843-3786862 | None:intergenic | 55.0% | |
| TGCAGGGTGTGAGGGTTGTT+TGG | - | chr8_1:3787984-3788003 | Msa1173370:CDS | 55.0% | |
| GCAGGGTGTGAGGGTTGTTT+GGG | - | chr8_1:3787985-3788004 | Msa1173370:CDS | 55.0% | |
| AAGGCTGCTTCCCCCAAACA+TGG | + | chr8_1:3788045-3788064 | None:intergenic | 55.0% | |
| ATGTTTGGGGGAAGCAGCCT+TGG | - | chr8_1:3788044-3788063 | Msa1173370:CDS | 55.0% | |
| GGAAGCAGCCTTGGAACACA+AGG | - | chr8_1:3788053-3788072 | Msa1173370:CDS | 55.0% | |
| !!! | GCCTGCTTTTTGGGTTGCTG+TGG | - | chr8_1:3786839-3786858 | Msa1173370:CDS | 55.0% |
| GCCACAGCAACCCAAAAAGC+AGG | + | chr8_1:3786843-3786862 | None:intergenic | 55.0% | |
| TGCAGGGTGTGAGGGTTGTT+TGG | - | chr8_1:3787984-3788003 | Msa1173370:CDS | 55.0% | |
| GCAGGGTGTGAGGGTTGTTT+GGG | - | chr8_1:3787985-3788004 | Msa1173370:CDS | 55.0% | |
| AAGGCTGCTTCCCCCAAACA+TGG | + | chr8_1:3788045-3788064 | None:intergenic | 55.0% | |
| ATGTTTGGGGGAAGCAGCCT+TGG | - | chr8_1:3788044-3788063 | Msa1173370:CDS | 55.0% | |
| GGAAGCAGCCTTGGAACACA+AGG | - | chr8_1:3788053-3788072 | Msa1173370:CDS | 55.0% | |
| GTGACGCATGCAGGGTGTGA+GGG | - | chr8_1:3787976-3787995 | Msa1173370:CDS | 60.0% | |
| GTGACGCATGCAGGGTGTGA+GGG | - | chr8_1:3787976-3787995 | Msa1173370:CDS | 60.0% | |
| CGTGACGCATGCAGGGTGTG+AGG | - | chr8_1:3787975-3787994 | Msa1173370:CDS | 65.0% | |
| CGTGACGCATGCAGGGTGTG+AGG | - | chr8_1:3787975-3787994 | Msa1173370:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 3786265 | 3788660 | 3786265 | ID=Msa1173370;Name=Msa1173370 |
| chr8_1 | mRNA | 3786265 | 3788660 | 3786265 | ID=Msa1173370-mRNA-1;Parent=Msa1173370;Name=Msa1173370-mRNA-1;_AED=0.06;_eAED=0.06;_QI=152|1|1|1|1|1|5|180|392 |
| chr8_1 | exon | 3786265 | 3786661 | 3786265 | ID=Msa1173370-mRNA-1:exon:1294;Parent=Msa1173370-mRNA-1 |
| chr8_1 | exon | 3786830 | 3786936 | 3786830 | ID=Msa1173370-mRNA-1:exon:1293;Parent=Msa1173370-mRNA-1 |
| chr8_1 | exon | 3787118 | 3787258 | 3787118 | ID=Msa1173370-mRNA-1:exon:1292;Parent=Msa1173370-mRNA-1 |
| chr8_1 | exon | 3787493 | 3787633 | 3787493 | ID=Msa1173370-mRNA-1:exon:1291;Parent=Msa1173370-mRNA-1 |
| chr8_1 | exon | 3787936 | 3788660 | 3787936 | ID=Msa1173370-mRNA-1:exon:1290;Parent=Msa1173370-mRNA-1 |
| chr8_1 | five_prime_UTR | 3788509 | 3788660 | 3788509 | ID=Msa1173370-mRNA-1:five_prime_utr;Parent=Msa1173370-mRNA-1 |
| chr8_1 | CDS | 3787936 | 3788508 | 3787936 | ID=Msa1173370-mRNA-1:cds;Parent=Msa1173370-mRNA-1 |
| chr8_1 | CDS | 3787493 | 3787633 | 3787493 | ID=Msa1173370-mRNA-1:cds;Parent=Msa1173370-mRNA-1 |
| chr8_1 | CDS | 3787118 | 3787258 | 3787118 | ID=Msa1173370-mRNA-1:cds;Parent=Msa1173370-mRNA-1 |
| chr8_1 | CDS | 3786830 | 3786936 | 3786830 | ID=Msa1173370-mRNA-1:cds;Parent=Msa1173370-mRNA-1 |
| chr8_1 | CDS | 3786445 | 3786661 | 3786445 | ID=Msa1173370-mRNA-1:cds;Parent=Msa1173370-mRNA-1 |
| chr8_1 | three_prime_UTR | 3786265 | 3786444 | 3786265 | ID=Msa1173370-mRNA-1:three_prime_utr;Parent=Msa1173370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
