AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0534450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0534450 MtrunA17_Chr4g0008451 98.137 644 10 2 1 643 1 643 0.0 1322
Msa0534450 MtrunA17_Chr4g0070551 50.318 628 283 8 12 621 1 617 0.0 632
Msa0534450 MtrunA17_Chr5g0436321 57.438 484 161 2 191 629 75 558 0.0 607
Msa0534450 MtrunA17_Chr5g0426591 50.935 428 197 6 206 621 85 511 6.89e-153 451
Msa0534450 MtrunA17_Chr3g0132371 50.467 428 200 5 206 623 115 540 5.96e-148 439
Msa0534450 MtrunA17_Chr3g0129981 48.115 451 219 6 187 627 72 517 2.31e-142 424
Msa0534450 MtrunA17_Chr5g0417871 49.015 406 196 6 223 623 80 479 7.78e-137 409
Msa0534450 MtrunA17_Chr4g0042711 49.373 399 195 5 232 625 97 493 3.22e-136 408
Msa0534450 MtrunA17_Chr2g0307971 50.254 394 183 5 231 615 114 503 3.55e-133 400
Msa0534450 MtrunA17_Chr6g0455571 50.384 391 187 4 231 615 114 503 6.53e-133 400
Msa0534450 MtrunA17_Chr4g0061781 50.254 394 183 5 231 615 115 504 1.29e-131 397
Msa0534450 MtrunA17_Chr5g0399311 41.628 430 228 10 203 623 92 507 2.52e-100 316
Msa0534450 MtrunA17_Chr4g0056061 41.725 429 229 10 203 623 76 491 9.34e-100 315
Msa0534450 MtrunA17_Chr3g0143821 40.136 441 238 11 206 638 82 504 6.69e-98 311
Msa0534450 MtrunA17_Chr5g0448581 35.616 511 279 14 129 631 41 509 7.77e-92 295
Msa0534450 MtrunA17_Chr3g0123521 38.686 411 222 8 230 621 148 547 6.71e-91 292
Msa0534450 MtrunA17_Chr1g0204121 37.471 435 238 12 206 624 61 477 8.96e-85 275
Msa0534450 MtrunA17_Chr4g0043911 36.902 439 244 12 203 621 122 547 1.11e-84 276
Msa0534450 MtrunA17_Chr1g0160781 36.818 440 245 13 203 622 121 547 1.67e-83 273
Msa0534450 MtrunA17_Chr3g0077321 35.991 439 247 11 208 625 123 548 2.76e-82 270
Msa0534450 MtrunA17_Chr3g0087291 36.009 436 260 8 199 625 135 560 7.67e-82 268
Msa0534450 MtrunA17_Chr5g0412251 33.187 455 252 10 206 621 60 501 1.05e-75 251
Msa0534450 MtrunA17_Chr3g0132951 32.059 471 265 11 191 621 60 515 1.89e-75 250
Msa0534450 MtrunA17_Chr1g0204141 35.828 441 244 14 206 626 61 482 3.04e-75 249
Msa0534450 MtrunA17_Chr5g0424241 35.349 430 243 14 233 639 158 575 6.66e-74 248
Msa0534450 MtrunA17_Chr2g0284071 32.981 473 251 15 204 623 183 642 5.74e-73 247
Msa0534450 MtrunA17_Chr4g0010511 34.023 435 268 8 200 625 196 620 4.91e-70 239
Msa0534450 MtrunA17_Chr4g0003561 35.260 346 209 9 229 570 72 406 7.08e-57 199
Msa0534450 MtrunA17_Chr4g0075311 31.049 467 259 13 206 621 137 591 1.43e-55 199
Msa0534450 MtrunA17_Chr1g0146501 33.333 300 172 9 231 508 89 382 9.07e-40 155
Msa0534450 MtrunA17_Chr3g0127811 32.770 296 166 9 231 508 62 342 3.94e-39 150
Msa0534450 MtrunA17_Chr7g0220381 29.866 298 187 7 230 508 96 390 4.35e-37 147
Msa0534450 MtrunA17_Chr7g0240241 50.000 118 54 2 395 507 7 124 1.56e-30 116
Msa0534450 MtrunA17_Chr4g0002361 24.862 362 228 13 207 559 63 389 1.10e-18 89.0
Msa0534450 MtrunA17_Chr2g0298881 23.481 362 229 11 209 559 12 336 1.83e-16 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0534450 AT2G37980.1 70.545 550 139 6 95 635 96 631 0.0 802
Msa0534450 AT3G54100.1 70.109 552 144 7 82 625 77 615 0.0 793
Msa0534450 AT5G01100.1 56.180 623 250 9 17 626 1 613 0.0 684
Msa0534450 AT5G35570.1 63.895 421 151 1 207 626 225 645 0.0 600
Msa0534450 AT1G22460.1 47.541 427 214 4 206 623 134 559 1.30e-137 414
Msa0534450 AT1G14020.1 49.873 395 191 5 232 621 91 483 4.09e-136 408
Msa0534450 AT5G15740.1 51.671 389 181 4 233 615 107 494 2.57e-134 404
Msa0534450 AT3G02250.1 50.765 392 186 4 231 616 105 495 3.18e-132 398
Msa0534450 AT5G64600.1 45.805 441 228 5 195 625 79 518 6.10e-132 398
Msa0534450 AT2G03280.1 49.231 390 191 5 232 615 88 476 6.90e-131 394
Msa0534450 AT2G03280.2 46.043 417 191 6 232 615 88 503 6.40e-125 379
Msa0534450 AT1G20550.1 38.341 446 254 11 206 643 80 512 6.38e-100 317
Msa0534450 AT1G76270.1 38.409 440 251 10 206 638 77 503 6.51e-98 311
Msa0534450 AT4G16650.2 40.402 448 241 13 188 623 72 505 4.81e-93 298
Msa0534450 AT4G16650.1 40.402 448 241 13 188 623 72 505 4.81e-93 298
Msa0534450 AT3G26370.1 39.173 411 220 8 230 621 156 555 8.64e-93 298
Msa0534450 AT4G38390.1 37.788 434 238 11 206 625 94 509 3.17e-92 296
Msa0534450 AT1G14970.3 37.046 413 230 11 232 625 9 410 2.95e-84 271
Msa0534450 AT1G38065.2 37.500 424 232 13 220 621 16 428 7.02e-84 271
Msa0534450 AT1G14970.2 37.046 413 230 11 232 625 35 436 9.14e-84 270
Msa0534450 AT1G38065.1 37.681 414 227 12 230 621 34 438 1.96e-83 270
Msa0534450 AT4G24530.1 34.725 455 245 10 206 621 75 516 1.13e-82 270
Msa0534450 AT1G04910.1 36.384 437 244 12 201 621 56 474 1.49e-82 270
Msa0534450 AT1G14970.1 37.349 415 226 12 232 625 155 556 2.75e-82 270
Msa0534450 AT1G38131.1 37.500 424 232 13 220 621 145 557 3.66e-82 271
Msa0534450 AT1G35510.1 33.147 537 309 16 109 623 50 558 3.02e-80 265
Msa0534450 AT2G01480.1 37.681 414 228 11 231 625 153 555 7.63e-80 264
Msa0534450 AT5G65470.1 34.177 474 254 13 193 622 44 503 1.02e-77 256
Msa0534450 AT2G01480.2 39.945 363 196 9 231 574 153 512 3.06e-77 256
Msa0534450 AT5G63390.1 35.059 425 258 8 206 621 133 548 4.67e-74 248
Msa0534450 AT3G07900.1 32.870 432 272 8 206 628 157 579 3.51e-71 241
Msa0534450 AT2G44500.1 34.018 438 263 10 202 626 142 566 4.36e-71 241
Msa0534450 AT1G62330.1 32.563 476 255 13 201 623 189 651 9.59e-69 236
Msa0534450 AT1G11990.1 33.632 446 258 14 201 622 158 589 2.80e-66 228
Msa0534450 AT1G29200.4 33.192 473 244 15 200 621 42 493 4.93e-65 222
Msa0534450 AT1G29200.1 33.192 473 244 15 200 621 42 493 4.93e-65 222
Msa0534450 AT1G29200.2 33.192 473 244 15 200 621 158 609 5.34e-64 223
Msa0534450 AT1G29200.3 33.257 436 223 13 237 621 1 419 5.47e-61 209
Msa0534450 AT1G11990.2 31.470 483 256 16 201 622 143 611 2.76e-60 213
Msa0534450 AT1G52630.1 35.244 349 213 8 229 575 71 408 6.46e-60 207
Msa0534450 AT1G52630.2 33.837 331 206 8 247 575 1 320 2.97e-51 181
Msa0534450 AT3G26370.2 41.096 219 117 3 230 438 156 372 1.82e-49 177
Msa0534450 AT3G03810.2 31.153 321 201 7 207 508 62 381 2.02e-43 166
Msa0534450 AT3G03810.1 31.153 321 201 7 207 508 62 381 2.02e-43 166
Msa0534450 AT2G44500.2 34.307 274 154 7 202 459 142 405 5.88e-39 149
Msa0534450 AT3G30300.2 31.208 298 185 8 229 508 97 392 1.41e-38 152
Msa0534450 AT3G30300.1 31.208 298 185 8 229 508 97 392 1.41e-38 152

Find 170 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTGAGTTGCCTTACTTTA+AGG 0.081846 4_1:+9895533 None:intergenic
GCTTCATCATGTTATTATTT+TGG 0.124405 4_1:-9895561 Msa0534450:three_prime_UTR
TTTGGCTTCATCCATATTTC+TGG 0.129450 4_1:+9898379 None:intergenic
CATTTGTTGCCCTTCATTTA+AGG 0.150482 4_1:-9896982 Msa0534450:intron
CTCTTGACCATGATTCATTT+TGG 0.159771 4_1:-9897605 Msa0534450:CDS
ATGAAACTTCTATGCCTAAA+AGG 0.209386 4_1:-9899624 Msa0534450:CDS
TACAGATTAGAAAATTATAT+TGG 0.212307 4_1:-9895340 Msa0534450:three_prime_UTR
TTCAGGTTAGGTATACAAAA+AGG 0.212416 4_1:-9895405 Msa0534450:three_prime_UTR
GTGTTTGTTGAAGCTGTTGC+TGG 0.223130 4_1:+9900129 None:intergenic
AGAATCAAAAGGAGCTTTAT+AGG 0.242348 4_1:-9895454 Msa0534450:three_prime_UTR
TTTAAGGTTTCGTTGTTTAT+TGG 0.255543 4_1:-9899766 Msa0534450:CDS
TTGAATAGACTCCAGAAATA+TGG 0.288105 4_1:-9898390 Msa0534450:intron
GTGCTCCAATACCAAATCTT+TGG 0.298670 4_1:+9895637 None:intergenic
ATACTTAAGAGCTTGGTAAT+TGG 0.301558 4_1:+9897066 None:intergenic
TTATTCAACATATTAGTTTC+AGG 0.306176 4_1:-9895422 Msa0534450:three_prime_UTR
ATAGAAGGTTTGAAGGATTT+CGG 0.307072 4_1:-9896184 Msa0534450:CDS
CCTCCTCAATAGTAAGATTA+TGG 0.310871 4_1:+9896582 None:intergenic
ACAGATTAGAAAATTATATT+GGG 0.315665 4_1:-9895339 Msa0534450:three_prime_UTR
TTAATGACAAGGCTAAATAT+TGG 0.339862 4_1:-9895585 Msa0534450:three_prime_UTR
TCTATTGTAAAGTTTGTATA+TGG 0.340461 4_1:+9900230 None:intergenic
TGATAATACTTGTCACTGTT+TGG 0.341054 4_1:+9898361 None:intergenic
TAGACGAGGGCTCGTTATCT+TGG 0.345074 4_1:-9895827 Msa0534450:CDS
GAGAAAGAGAGGAGAGAGAG+GGG 0.349875 4_1:+9900359 None:intergenic
TGTTCTAGTTCGGAGAAATC+TGG 0.356116 4_1:+9900012 None:intergenic
CCGGTTCGGTTCAGTGGTTC+CGG 0.358275 4_1:-9899855 Msa0534450:CDS
TCAAAATCGTCTCGCTGCTT+TGG 0.360208 4_1:-9896282 Msa0534450:CDS
CTTCAACAGCCTCATCAAAT+AGG 0.363086 4_1:+9895475 None:intergenic
TTGGAAAGACTTTGGTTGAT+AGG 0.364292 4_1:-9897024 Msa0534450:CDS
GTTGTGGGACCCGCGACCCT+TGG 0.366847 4_1:+9900102 None:intergenic
GTGACTCTCCTACCTGTCTA+AGG 0.367224 4_1:+9895748 None:intergenic
TTGAGGAGGCTGAGGAACTT+AGG 0.369348 4_1:-9896568 Msa0534450:CDS
AATTATGTTGGTTGTTATGT+CGG 0.377457 4_1:-9899794 Msa0534450:CDS
AAATTTAATAATGATGAAAC+AGG 0.377550 4_1:+9899976 None:intergenic
TTGTCAAGGCCCCGGTTTCA+TGG 0.378191 4_1:-9897365 Msa0534450:CDS
CAACATATTAGTTTCAGGTT+AGG 0.382853 4_1:-9895417 Msa0534450:three_prime_UTR
AAGAGAAAGTAGCGCGTGAT+TGG 0.385220 4_1:+9899919 None:intergenic
GAATCAAAAGGAGCTTTATA+GGG 0.385274 4_1:-9895453 Msa0534450:three_prime_UTR
GAGAGAAAGAGAGGAGAGAG+AGG 0.385903 4_1:+9900357 None:intergenic
TTGTGGGACCCGCGACCCTT+GGG 0.390526 4_1:+9900103 None:intergenic
CACACCTTTGACCATGAAAC+CGG 0.392344 4_1:+9897354 None:intergenic
TTAAAACCGCAAAGATCTTT+CGG 0.401723 4_1:+9899815 None:intergenic
TATCTATGGTGGCAATAGTA+TGG 0.405082 4_1:-9896387 Msa0534450:CDS
ACAACTATCTACATTGTTGC+AGG 0.407400 4_1:-9896413 Msa0534450:CDS
TTTGGCACAACCTTAAAGTA+AGG 0.407828 4_1:-9895543 Msa0534450:three_prime_UTR
TGCAACGGTTTAAAGAAGAT+TGG 0.412961 4_1:-9899690 Msa0534450:CDS
TCGGTTCAGTGGTTCCGGTC+TGG 0.414105 4_1:-9899850 Msa0534450:CDS
TCTTCTTACGTTGTCCGGTT+CGG 0.414387 4_1:-9899869 Msa0534450:CDS
GTCTTTGTTTATACTTATGA+TGG 0.414968 4_1:-9896233 Msa0534450:CDS
TAAAAGGGTCCTTGAGAGAT+TGG 0.423649 4_1:-9899608 Msa0534450:CDS
GGATTGAATCAAATGAGAAC+AGG 0.423703 4_1:-9898183 Msa0534450:CDS
AGATGAAGCAAGACCATTGT+TGG 0.428664 4_1:+9897111 None:intergenic
CCGTCGTTCGCGATGTCGTC+GGG 0.430202 4_1:-9900156 Msa0534450:CDS
TTACACACGCAACCAGGAAA+AGG 0.437744 4_1:+9895696 None:intergenic
CTAGACCAAAGATTTGGTAT+TGG 0.440117 4_1:-9895642 Msa0534450:CDS
AAACAAAGACATCACTTTCA+AGG 0.440814 4_1:+9896246 None:intergenic
AGACGAGGGCTCGTTATCTT+GGG 0.441593 4_1:-9895826 Msa0534450:CDS
GCAACGGTTTAAAGAAGATT+GGG 0.441885 4_1:-9899689 Msa0534450:CDS
TGAAGAGCTTGGAAAGACTT+TGG 0.444563 4_1:-9897032 Msa0534450:CDS
TCGTTGAGTACTTGCCTGTT+CGG 0.449674 4_1:-9897407 Msa0534450:CDS
TACTTACTCATTCGATTCCT+AGG 0.450269 4_1:+9898325 None:intergenic
GAAACCGGGGCCTTGACAAT+AGG 0.450769 4_1:+9897369 None:intergenic
AGGCGGTGCAAGGTCATAGA+AGG 0.454029 4_1:-9896199 Msa0534450:CDS
ATACTATTGCCACCATAGAT+AGG 0.454363 4_1:+9896389 None:intergenic
GTCGAATGAGTAAAGACATT+AGG 0.455773 4_1:+9896344 None:intergenic
TTCACAGATGCATACCGAAC+AGG 0.457200 4_1:+9897393 None:intergenic
TGAGGAGGCTGAGGAACTTA+GGG 0.457909 4_1:-9896567 Msa0534450:CDS
AGATTGGGCTTCTGCTCAAA+GGG 0.458291 4_1:-9899674 Msa0534450:CDS
AAGGTTTCGTTGTTTATTGG+TGG 0.466303 4_1:-9899763 Msa0534450:CDS
ATTGTCTTGATGTTCTAGTT+CGG 0.468236 4_1:+9900002 None:intergenic
GCTGCTTCTCTTGGTGACAT+AGG 0.474180 4_1:+9896470 None:intergenic
GGAAAACTATCAATCCTGAT+AGG 0.478760 4_1:-9896163 Msa0534450:intron
AAATGTGCTTTCCTTTGTCA+AGG 0.480026 4_1:-9895498 Msa0534450:three_prime_UTR
CGTTGTCCGGTTCGGTTCAG+TGG 0.480911 4_1:-9899861 Msa0534450:CDS
TGAAACTTCTATGCCTAAAA+GGG 0.481140 4_1:-9899623 Msa0534450:CDS
ATTGTTGCAGGACCTATCTA+TGG 0.483319 4_1:-9896401 Msa0534450:CDS
ACCTTGTGTCTCTTCAACAT+TGG 0.487098 4_1:+9897166 None:intergenic
AGGTATAATACCTTAAATGA+AGG 0.487554 4_1:+9896972 None:intergenic
CAAGGTCATAGAAGGTTTGA+AGG 0.489294 4_1:-9896191 Msa0534450:CDS
CCGGAACCACTGAACCGAAC+CGG 0.490350 4_1:+9899855 None:intergenic
ATGTAGATAGTTGTAGTTGA+AGG 0.490492 4_1:+9896422 None:intergenic
ACCGTCGTTCGCGATGTCGT+CGG 0.491561 4_1:-9900157 Msa0534450:CDS
TCTATGACCTTGCACCGCCT+TGG 0.494185 4_1:+9896202 None:intergenic
TGTTTGTTGAAGCTGTTGCT+GGG 0.495021 4_1:+9900130 None:intergenic
CTTAAATGAAGGGCAACAAA+TGG 0.495041 4_1:+9896983 None:intergenic
CTAGCTCCTCCTCAGTTGCA+AGG 0.495758 4_1:+9896321 None:intergenic
AGAGAAAGAGAGGAGAGAGA+GGG 0.495808 4_1:+9900358 None:intergenic
CTGCTTCTCTTGGTGACATA+GGG 0.496676 4_1:+9896471 None:intergenic
TATCTTCTAGTTCATGCAAA+TGG 0.498050 4_1:-9898207 Msa0534450:CDS
GTTTCGTTGTTTATTGGTGG+TGG 0.501920 4_1:-9899760 Msa0534450:CDS
GTTCTAGTTCGGAGAAATCT+GGG 0.506113 4_1:+9900013 None:intergenic
GGTTTGGGAGAGAGAAAGAG+AGG 0.507859 4_1:+9900348 None:intergenic
TACACACGCAACCAGGAAAA+GGG 0.513466 4_1:+9895697 None:intergenic
AACAAAGACATCACTTTCAA+GGG 0.513698 4_1:+9896247 None:intergenic
CTGAGGAACTTAGGGTTATG+AGG 0.514098 4_1:-9896559 Msa0534450:CDS
ACAGTTGAGATTGAAGAGCT+TGG 0.514737 4_1:-9897043 Msa0534450:CDS
TACACGTCTACGTGTTGTTG+TGG 0.517013 4_1:+9900086 None:intergenic
TAACCATAATCTTACTATTG+AGG 0.518168 4_1:-9896585 Msa0534450:CDS
GATCAGTCCAAAATGAATCA+TGG 0.518495 4_1:+9897598 None:intergenic
CGTGGGCCGAAAGATCTTTG+CGG 0.519870 4_1:-9899821 Msa0534450:CDS
CAGATTAGAAAATTATATTG+GGG 0.520262 4_1:-9895338 Msa0534450:three_prime_UTR
AAGATTGGGCTTCTGCTCAA+AGG 0.521031 4_1:-9899675 Msa0534450:CDS
AACACAAGCCCAAGGGTCGC+GGG 0.525728 4_1:-9900111 Msa0534450:CDS
AAACACAAGCCCAAGGGTCG+CGG 0.527381 4_1:-9900112 Msa0534450:CDS
AGCGTCGATCGACGATTGCA+AGG 0.527822 4_1:-9896500 Msa0534450:CDS
TGAGGTATGAAGTGAAGCAT+TGG 0.528719 4_1:-9896541 Msa0534450:CDS
TTGTCAAGGCCTATTTGATG+AGG 0.532009 4_1:-9895484 Msa0534450:three_prime_UTR
CAACTGTATACTTAAGAGCT+TGG 0.532962 4_1:+9897059 None:intergenic
GGTGGTGGTGTTGAAATGAA+TGG 0.533134 4_1:-9899745 Msa0534450:CDS
AACATGGCCAAGGCGGTGCA+AGG 0.545514 4_1:-9896209 Msa0534450:CDS
GAGGCTGTTGAAGAATCAAA+AGG 0.546847 4_1:-9895465 Msa0534450:three_prime_UTR
TCTTACTATTGAGGAGGCTG+AGG 0.548435 4_1:-9896576 Msa0534450:CDS
CTTCTAGTTCATGCAAATGG+TGG 0.555242 4_1:-9898204 Msa0534450:CDS
ACACCTTTGACCATGAAACC+GGG 0.557615 4_1:+9897355 None:intergenic
GACTTGTTACACACGCAACC+AGG 0.558754 4_1:+9895690 None:intergenic
GAAGCCTATTGTCAAGGCCC+CGG 0.558923 4_1:-9897373 Msa0534450:CDS
AGGTGCACCTTACCTTAGAC+AGG 0.567522 4_1:-9895760 Msa0534450:CDS
GATTAGAAAATTATATTGGG+GGG 0.571960 4_1:-9895336 Msa0534450:three_prime_UTR
AGAAAGAGAGGAGAGAGAGG+GGG 0.575639 4_1:+9900360 None:intergenic
GTGGTGGTGTTGAAATGAAT+GGG 0.576107 4_1:-9899744 Msa0534450:CDS
GGTATAATACCTTAAATGAA+GGG 0.576439 4_1:+9896973 None:intergenic
TCTCCTACCTGTCTAAGGTA+AGG 0.576632 4_1:+9895753 None:intergenic
GACTTACAGCCAATCTCTCA+AGG 0.580308 4_1:+9899599 None:intergenic
ACACGTCTACGTGTTGTTGT+GGG 0.581373 4_1:+9900087 None:intergenic
CAGATACGAGAAAGACATGC+TGG 0.585937 4_1:-9896621 Msa0534450:CDS
ATTAGGATATTCAGCGCGAA+AGG 0.587122 4_1:+9896361 None:intergenic
TCATTCGACCCTTGCAACTG+AGG 0.588544 4_1:-9896330 Msa0534450:CDS
ATGAACTAGAAGATAGCCGT+TGG 0.588574 4_1:+9898215 None:intergenic
AATGAATCATGGTCAAGAGA+AGG 0.590058 4_1:+9897609 None:intergenic
ATCTGTGAAGCCTATTGTCA+AGG 0.591399 4_1:-9897379 Msa0534450:CDS
TGTAGATAGTTGTAGTTGAA+GGG 0.593442 4_1:+9896423 None:intergenic
GTTTATGTCATTTAATGACA+AGG 0.594034 4_1:-9895596 Msa0534450:three_prime_UTR
TAGCTCCTCCTCAGTTGCAA+GGG 0.599093 4_1:+9896322 None:intergenic
AAGGAGAAATTGTAAGAGAG+TGG 0.601581 4_1:+9900393 None:intergenic
GAAAATGTTCTATGAAAATG+CGG 0.603087 4_1:+9899890 None:intergenic
TTATACTTATGATGGAAACA+TGG 0.605653 4_1:-9896225 Msa0534450:CDS
TTCGACCCTTGCAACTGAGG+AGG 0.605856 4_1:-9896327 Msa0534450:CDS
CGTCTAATTGATCAATCAGT+CGG 0.609484 4_1:+9895844 None:intergenic
CACGCAACCAGGAAAAGGGT+TGG 0.609712 4_1:+9895701 None:intergenic
CTTCAACAAACACAAGCCCA+AGG 0.611377 4_1:-9900119 Msa0534450:CDS
TCGTTCGCGATGTCGTCGGG+CGG 0.615590 4_1:-9900153 Msa0534450:CDS
AAAATGTTCTATGAAAATGC+GGG 0.616337 4_1:+9899891 None:intergenic
CCCGACGACATCGCGAACGA+CGG 0.618085 4_1:+9900156 None:intergenic
ATCAATGTGTGTCACGACCT+AGG 0.621734 4_1:-9898342 Msa0534450:CDS
GGCCCCGGTTTCATGGTCAA+AGG 0.622906 4_1:-9897358 Msa0534450:intron
GATTCAAGACTTGCCAACAA+TGG 0.624892 4_1:-9897124 Msa0534450:CDS
GTATGAAGTGAAGCATTGGA+AGG 0.629151 4_1:-9896537 Msa0534450:CDS
GCACCTTACCTTAGACAGGT+AGG 0.633523 4_1:-9895756 Msa0534450:CDS
AAGGCAACTCACATGAGTTG+TGG 0.634283 4_1:-9895524 Msa0534450:three_prime_UTR
AATCATGGTCAAGAGAAGGA+AGG 0.636340 4_1:+9897613 None:intergenic
AGATTAGAAAATTATATTGG+GGG 0.637387 4_1:-9895337 Msa0534450:three_prime_UTR
TCCAATGTTGAAGAGACACA+AGG 0.642304 4_1:-9897167 Msa0534450:CDS
TTATGATGGAAACATGGCCA+AGG 0.644327 4_1:-9896219 Msa0534450:CDS
AGTTTGCATTCAAATCGACT+AGG 0.644880 4_1:-9895780 Msa0534450:CDS
CCATAATCTTACTATTGAGG+AGG 0.650927 4_1:-9896582 Msa0534450:CDS
CATCAAATAGGCCTTGACAA+AGG 0.651597 4_1:+9895487 None:intergenic
GATTGAATCAAATGAGAACA+GGG 0.659889 4_1:-9898182 Msa0534450:CDS
TTCAACAAACACAAGCCCAA+GGG 0.661291 4_1:-9900118 Msa0534450:CDS
GTTGCAGGACCTATCTATGG+TGG 0.662086 4_1:-9896398 Msa0534450:CDS
TGTAGTTGAAGGGTACCCCA+TGG 0.662919 4_1:+9896433 None:intergenic
CACCTTTGACCATGAAACCG+GGG 0.666216 4_1:+9897356 None:intergenic
CTGATTGATCAATTAGACGA+GGG 0.682138 4_1:-9895840 Msa0534450:CDS
AAGAGAAGGAAGGACAAGTG+TGG 0.685590 4_1:+9897623 None:intergenic
TGATGGAAACATGGCCAAGG+CGG 0.692841 4_1:-9896216 Msa0534450:CDS
GTCGATCGACGATTGCAAGG+AGG 0.693275 4_1:-9896497 Msa0534450:CDS
GATATGTGACATGGTAGCTG+TGG 0.697736 4_1:-9897661 Msa0534450:CDS
ACTGATTGATCAATTAGACG+AGG 0.699873 4_1:-9895841 Msa0534450:CDS
GATGATGAACATGCGCGTGG+TGG 0.720142 4_1:+9899950 None:intergenic
ATTGAATCAAATGAGAACAG+GGG 0.733541 4_1:-9898181 Msa0534450:intron
TGACATGCAGATATGTGACA+TGG 0.749290 4_1:-9897670 Msa0534450:intron
AGTGATGATGAACATGCGCG+TGG 0.751509 4_1:+9899947 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAAAGAAATTTATTTAT+TGG + chr4_1:9896668-9896687 None:intergenic 10.0%
!!! AAAAAAAATGTTATGTTTTA+TGG - chr4_1:9899030-9899049 Msa0534450:intron 10.0%
!!! TAAAAGAATAAAGAAATTTT+GGG + chr4_1:9899784-9899803 None:intergenic 10.0%
!!! TTAAAAGAATAAAGAAATTT+TGG + chr4_1:9899785-9899804 None:intergenic 10.0%
!!! TTCTTTATTCTTTTAATTTA+TGG - chr4_1:9899789-9899808 Msa0534450:CDS 10.0%
!!! TTTTTTGTGTATAATTAAAA+AGG - chr4_1:9900360-9900379 Msa0534450:five_prime_UTR 10.0%
!!! TTTTTGTGTATAATTAAAAA+GGG - chr4_1:9900361-9900380 Msa0534450:five_prime_UTR 10.0%
!! AAATTTAATAATGATGAAAC+AGG + chr4_1:9895755-9895774 None:intergenic 15.0%
!!! ATTACGTCATTTTTTTAAAA+TGG - chr4_1:9896596-9896615 Msa0534450:CDS 15.0%
!! TAAAATGGAAGATTTATTAT+TGG - chr4_1:9896611-9896630 Msa0534450:CDS 15.0%
!!! TATTTTTTAACGAATCAATA+TGG + chr4_1:9896700-9896719 None:intergenic 15.0%
!!! TATTGATTCGTTAAAAAATA+TGG - chr4_1:9896700-9896719 Msa0534450:intron 15.0%
!!! AAAACTTAGTTTTGATAAAT+TGG + chr4_1:9896837-9896856 None:intergenic 15.0%
!!! ACATAGTTTTGAATATTTTT+AGG - chr4_1:9897126-9897145 Msa0534450:CDS 15.0%
!! ATATATTATTCATATAGTGT+TGG - chr4_1:9897589-9897608 Msa0534450:intron 15.0%
!! TATATTATTCATATAGTGTT+GGG - chr4_1:9897590-9897609 Msa0534450:intron 15.0%
!!! CTTTAAATATAATTTTAAGG+TGG - chr4_1:9897683-9897702 Msa0534450:intron 15.0%
!!! CATTTTTTAAAACCATTTTT+AGG + chr4_1:9898864-9898883 None:intergenic 15.0%
!! TACAGATTAGAAAATTATAT+TGG - chr4_1:9900388-9900407 Msa0534450:five_prime_UTR 15.0%
!! ACAGATTAGAAAATTATATT+GGG - chr4_1:9900389-9900408 Msa0534450:five_prime_UTR 15.0%
!!! TGTTTTTGTGTTTTTGTTTT+TGG + chr4_1:9895411-9895430 None:intergenic 20.0%
!! TCTATTGTAAAGTTTGTATA+TGG + chr4_1:9895501-9895520 None:intergenic 20.0%
!!! AAAAAAAGAAAAAGCACTTT+TGG + chr4_1:9896185-9896204 None:intergenic 20.0%
!!! TAACCTTTTCTACTTTATAA+CGG + chr4_1:9896274-9896293 None:intergenic 20.0%
!!! ATTTTTCAACTCTTTTTTCA+TGG - chr4_1:9896443-9896462 Msa0534450:CDS 20.0%
!!! AATATACTTACTTTGTTTTC+TGG - chr4_1:9896522-9896541 Msa0534450:CDS 20.0%
!!! ATATACTTACTTTGTTTTCT+GGG - chr4_1:9896523-9896542 Msa0534450:CDS 20.0%
!!! AAGATTTATTATTGGTTAAG+AGG - chr4_1:9896619-9896638 Msa0534450:CDS 20.0%
!! GTTAAAAAATATGGATATAG+AGG - chr4_1:9896709-9896728 Msa0534450:intron 20.0%
!! TATATTAGTATATTACAGCA+TGG + chr4_1:9897259-9897278 None:intergenic 20.0%
!! ATATTATTCATATAGTGTTG+GGG - chr4_1:9897591-9897610 Msa0534450:intron 20.0%
!!! GACATTATATTTTGGAAAAT+TGG + chr4_1:9898224-9898243 None:intergenic 20.0%
!!! ATATTAGGGACATTATATTT+TGG + chr4_1:9898232-9898251 None:intergenic 20.0%
!!! ACTTCAAAGATATTTTTGAT+TGG - chr4_1:9898261-9898280 Msa0534450:intron 20.0%
!!! TGTTACAAATTTTTCTGAAA+AGG + chr4_1:9898888-9898907 None:intergenic 20.0%
!! ACATAAATGATTACTTGAAT+AGG - chr4_1:9899600-9899619 Msa0534450:intron 20.0%
!! GTCATTAAGGATTAATTTAA+CGG + chr4_1:9899713-9899732 None:intergenic 20.0%
!!! TTATTCAACATATTAGTTTC+AGG - chr4_1:9900306-9900325 Msa0534450:five_prime_UTR 20.0%
!! CAGATTAGAAAATTATATTG+GGG - chr4_1:9900390-9900409 Msa0534450:five_prime_UTR 20.0%
!! AGATTAGAAAATTATATTGG+GGG - chr4_1:9900391-9900410 Msa0534450:five_prime_UTR 20.0%
! AAAATGTTCTATGAAAATGC+GGG + chr4_1:9895840-9895859 None:intergenic 25.0%
! GAAAATGTTCTATGAAAATG+CGG + chr4_1:9895841-9895860 None:intergenic 25.0%
!! AATTATGTTGGTTGTTATGT+CGG - chr4_1:9895934-9895953 Msa0534450:intron 25.0%
!!! TGTTATGTCGGTTTTTTTTA+AGG - chr4_1:9895946-9895965 Msa0534450:intron 25.0%
!! TTTAAGGTTTCGTTGTTTAT+TGG - chr4_1:9895962-9895981 Msa0534450:intron 25.0%
!!! GGGAAAAAAAGTATTGAAAA+TGG - chr4_1:9896004-9896023 Msa0534450:intron 25.0%
! TCTCCTAAAAATTCTCTTTA+GGG - chr4_1:9896211-9896230 Msa0534450:CDS 25.0%
!! ATTCCCTAAAGAGAATTTTT+AGG + chr4_1:9896217-9896236 None:intergenic 25.0%
! TTACCGTTATAAAGTAGAAA+AGG - chr4_1:9896268-9896287 Msa0534450:CDS 25.0%
!! TTGGCTTAATTTTCATACTT+TGG + chr4_1:9896773-9896792 None:intergenic 25.0%
!!! AATATTTTTAGGTTCTTGCT+AGG - chr4_1:9897137-9897156 Msa0534450:CDS 25.0%
! CAATACTTATCCATGTAATA+GGG + chr4_1:9897286-9897305 None:intergenic 25.0%
! TCAATACTTATCCATGTAAT+AGG + chr4_1:9897287-9897306 None:intergenic 25.0%
! TTAAAAATGTCTCTCATAGT+TGG - chr4_1:9897621-9897640 Msa0534450:CDS 25.0%
!!! TTCAAACGATTTTCAAGAAT+TGG + chr4_1:9897722-9897741 None:intergenic 25.0%
! ATCAAAACTCGACTAATATT+CGG - chr4_1:9897868-9897887 Msa0534450:intron 25.0%
! CTTCAGTTCGAAAAAAAATA+AGG + chr4_1:9897898-9897917 None:intergenic 25.0%
! GAAGTCACTGAAATATATTA+GGG + chr4_1:9898246-9898265 None:intergenic 25.0%
! TGAAGTCACTGAAATATATT+AGG + chr4_1:9898247-9898266 None:intergenic 25.0%
!!! TCAAAGATATTTTTGATTGG+AGG - chr4_1:9898264-9898283 Msa0534450:intron 25.0%
!!! TACCTATTTTAGTTACTGTT+AGG - chr4_1:9898423-9898442 Msa0534450:intron 25.0%
! TACCTAACAGTAACTAAAAT+AGG + chr4_1:9898428-9898447 None:intergenic 25.0%
! GGTATAATACCTTAAATGAA+GGG + chr4_1:9898758-9898777 None:intergenic 25.0%
! AGGTATAATACCTTAAATGA+AGG + chr4_1:9898759-9898778 None:intergenic 25.0%
! TAGATGAAAACTCCTAAAAA+TGG - chr4_1:9898849-9898868 Msa0534450:intron 25.0%
! TTTGAAAACAAAGACTAATG+TGG - chr4_1:9898943-9898962 Msa0534450:intron 25.0%
!! TAAGGAAATTTGCTTACTTT+AGG - chr4_1:9899063-9899082 Msa0534450:intron 25.0%
! TAACCATAATCTTACTATTG+AGG - chr4_1:9899143-9899162 Msa0534450:intron 25.0%
!! GTCTTTGTTTATACTTATGA+TGG - chr4_1:9899495-9899514 Msa0534450:intron 25.0%
!! TTATACTTATGATGGAAACA+TGG - chr4_1:9899503-9899522 Msa0534450:intron 25.0%
! ATGATTACTTGAATAGGATT+TGG - chr4_1:9899606-9899625 Msa0534450:CDS 25.0%
!!! ATGCAAACTTTTAACTTCTA+AGG + chr4_1:9899937-9899956 None:intergenic 25.0%
! AAAAAATTCTCTTCTGTTCT+TGG + chr4_1:9900005-9900024 None:intergenic 25.0%
!! GTTTATGTCATTTAATGACA+AGG - chr4_1:9900132-9900151 Msa0534450:CDS 25.0%
! TTAATGACAAGGCTAAATAT+TGG - chr4_1:9900143-9900162 Msa0534450:CDS 25.0%
!! GCTTCATCATGTTATTATTT+TGG - chr4_1:9900167-9900186 Msa0534450:CDS 25.0%
! GATTAGAAAATTATATTGGG+GGG - chr4_1:9900392-9900411 Msa0534450:five_prime_UTR 25.0%
!!! TTGTTTTTGGTTGAAGGTTT+GGG + chr4_1:9895398-9895417 None:intergenic 30.0%
!!! TTTGTTTTTGGTTGAAGGTT+TGG + chr4_1:9895399-9895418 None:intergenic 30.0%
!!! GTGTTTTTGTTTTTGGTTGA+AGG + chr4_1:9895404-9895423 None:intergenic 30.0%
TGTATATGGTTGTAGTTTCT+GGG + chr4_1:9895487-9895506 None:intergenic 30.0%
TTGTATATGGTTGTAGTTTC+TGG + chr4_1:9895488-9895507 None:intergenic 30.0%
! ATTGTCTTGATGTTCTAGTT+CGG + chr4_1:9895729-9895748 None:intergenic 30.0%
TTAAAACCGCAAAGATCTTT+CGG + chr4_1:9895916-9895935 None:intergenic 30.0%
!!! CTTTGCGGTTTTAATTATGT+TGG - chr4_1:9895922-9895941 Msa0534450:intron 30.0%
!! ATGGACAATTGATTTTGCAA+CGG - chr4_1:9896023-9896042 Msa0534450:intron 30.0%
ATGAAACTTCTATGCCTAAA+AGG - chr4_1:9896104-9896123 Msa0534450:intron 30.0%
TGAAACTTCTATGCCTAAAA+GGG - chr4_1:9896105-9896124 Msa0534450:intron 30.0%
GTCTCCTAAAAATTCTCTTT+AGG - chr4_1:9896210-9896229 Msa0534450:CDS 30.0%
!!! AATTAGCTTTTACGTGTGAT+TGG - chr4_1:9896389-9896408 Msa0534450:CDS 30.0%
!!! TTACTTTGTTTTCTGGGATA+AGG - chr4_1:9896529-9896548 Msa0534450:CDS 30.0%
!! TGATGTAGAAGTATTTGACA+TGG - chr4_1:9896799-9896818 Msa0534450:intron 30.0%
! GAAGTATTTGACATGGTTTA+AGG - chr4_1:9896806-9896825 Msa0534450:intron 30.0%
! TATTTGACATGGTTTAAGGT+TGG - chr4_1:9896810-9896829 Msa0534450:intron 30.0%
ACAACAAAGTTCTATAGTCA+TGG + chr4_1:9897016-9897035 None:intergenic 30.0%
! GACTATAGAACTTTGTTGTA+AGG - chr4_1:9897017-9897036 Msa0534450:CDS 30.0%
TGAAAATTCCACTTATTCGA+TGG + chr4_1:9897054-9897073 None:intergenic 30.0%
ATTCCTTACATGTAACAAGT+CGG - chr4_1:9897099-9897118 Msa0534450:CDS 30.0%
AATATAGCAACCCTATTACA+TGG - chr4_1:9897273-9897292 Msa0534450:intron 30.0%
TTGAATAGACTCCAGAAATA+TGG - chr4_1:9897338-9897357 Msa0534450:intron 30.0%
TGATAATACTTGTCACTGTT+TGG + chr4_1:9897370-9897389 None:intergenic 30.0%
TGAGTAAGTACAATTGTACT+TGG - chr4_1:9897416-9897435 Msa0534450:CDS 30.0%
!! TATCTTCTAGTTCATGCAAA+TGG - chr4_1:9897521-9897540 Msa0534450:intron 30.0%
GATTGAATCAAATGAGAACA+GGG - chr4_1:9897546-9897565 Msa0534450:intron 30.0%
ATTGAATCAAATGAGAACAG+GGG - chr4_1:9897547-9897566 Msa0534450:intron 30.0%
!! ATGAGAGACATTTTTAAGAG+TGG + chr4_1:9897618-9897637 None:intergenic 30.0%
TCAAGAATTGGACTTATAAG+TGG + chr4_1:9897710-9897729 None:intergenic 30.0%
AATGCAAAGTCTATTATCGT+TGG + chr4_1:9897748-9897767 None:intergenic 30.0%
AATATGAGGGAAATTTACCT+TGG + chr4_1:9898155-9898174 None:intergenic 30.0%
CACATGATTGTGAAATATGA+GGG + chr4_1:9898168-9898187 None:intergenic 30.0%
CTCATATTTCACAATCATGT+GGG - chr4_1:9898167-9898186 Msa0534450:intron 30.0%
! TTTGGAAAATTGGTAACATG+AGG + chr4_1:9898214-9898233 None:intergenic 30.0%
! ATTTAGATACTTCGTTTTGC+AGG - chr4_1:9898513-9898532 Msa0534450:intron 30.0%
! ATACTTAAGAGCTTGGTAAT+TGG + chr4_1:9898665-9898684 None:intergenic 30.0%
! AAACACATCTTTGAGTTATG+AGG + chr4_1:9898779-9898798 None:intergenic 30.0%
TAACAAACAGATCCTGTATT+TGG - chr4_1:9898903-9898922 Msa0534450:intron 30.0%
! TTTTATGGTCAATCACACTA+AGG - chr4_1:9899045-9899064 Msa0534450:intron 30.0%
TATCTGCATTATAGGAAGAA+AGG + chr4_1:9899093-9899112 None:intergenic 30.0%
TGTAGATAGTTGTAGTTGAA+GGG + chr4_1:9899308-9899327 None:intergenic 30.0%
ATGTAGATAGTTGTAGTTGA+AGG + chr4_1:9899309-9899328 None:intergenic 30.0%
AACAAAGACATCACTTTCAA+GGG + chr4_1:9899484-9899503 None:intergenic 30.0%
AAACAAAGACATCACTTTCA+AGG + chr4_1:9899485-9899504 None:intergenic 30.0%
ATAGAAGGTTTGAAGGATTT+CGG - chr4_1:9899544-9899563 Msa0534450:intron 30.0%
TTAGATTAATCCAACCTCTA+AGG + chr4_1:9899666-9899685 None:intergenic 30.0%
TAGAGGTTGGATTAATCTAA+AGG - chr4_1:9899666-9899685 Msa0534450:CDS 30.0%
CAACAAAATCTCAGTCATTA+AGG + chr4_1:9899726-9899745 None:intergenic 30.0%
! ATTTTGTTGAAGAGATAGAG+AGG - chr4_1:9899737-9899756 Msa0534450:CDS 30.0%
! TTTTGTTGAAGAGATAGAGA+GGG - chr4_1:9899738-9899757 Msa0534450:CDS 30.0%
!! GAATAAAGAAATTTTGGGTG+TGG + chr4_1:9899779-9899798 None:intergenic 30.0%
GCAAATGATACGAAATGAAA+TGG + chr4_1:9899850-9899869 None:intergenic 30.0%
CAAAAACTAGACCAAAGATT+TGG - chr4_1:9900080-9900099 Msa0534450:CDS 30.0%
! AGAATCAAAAGGAGCTTTAT+AGG - chr4_1:9900274-9900293 Msa0534450:intron 30.0%
! GAATCAAAAGGAGCTTTATA+GGG - chr4_1:9900275-9900294 Msa0534450:intron 30.0%
!! CAACATATTAGTTTCAGGTT+AGG - chr4_1:9900311-9900330 Msa0534450:five_prime_UTR 30.0%
! TTCAGGTTAGGTATACAAAA+AGG - chr4_1:9900323-9900342 Msa0534450:five_prime_UTR 30.0%
TCAGGTTAGGTATACAAAAA+GGG - chr4_1:9900324-9900343 Msa0534450:five_prime_UTR 30.0%
AAAATTATATTGGGGGGAAT+TGG - chr4_1:9900398-9900417 Msa0534450:five_prime_UTR 30.0%
AAGGAGAAATTGTAAGAGAG+TGG + chr4_1:9895338-9895357 None:intergenic 35.0%
! CATTTTCTTCTTACGTTGTC+CGG - chr4_1:9895854-9895873 Msa0534450:CDS 35.0%
AAGGTTTCGTTGTTTATTGG+TGG - chr4_1:9895965-9895984 Msa0534450:intron 35.0%
TGCAACGGTTTAAAGAAGAT+TGG - chr4_1:9896038-9896057 Msa0534450:intron 35.0%
GCAACGGTTTAAAGAAGATT+GGG - chr4_1:9896039-9896058 Msa0534450:intron 35.0%
!!! CTCTGTTGTTTTTGTCTTTG+AGG - chr4_1:9896361-9896380 Msa0534450:CDS 35.0%
!!! CTTTTTTCATGGAAGATTGC+TGG - chr4_1:9896454-9896473 Msa0534450:CDS 35.0%
!!! GTTTTTGAAACTGAGGTGTT+TGG - chr4_1:9896559-9896578 Msa0534450:CDS 35.0%
CAACTGAAACATGACTCAAT+TGG - chr4_1:9896870-9896889 Msa0534450:intron 35.0%
AAACATGACTCAATTGGTGT+TGG - chr4_1:9896876-9896895 Msa0534450:intron 35.0%
!! CCGATATCACTATCGATTTA+GGG + chr4_1:9896987-9897006 None:intergenic 35.0%
CCCTAAATCGATAGTGATAT+CGG - chr4_1:9896984-9897003 Msa0534450:CDS 35.0%
!! ACCGATATCACTATCGATTT+AGG + chr4_1:9896988-9897007 None:intergenic 35.0%
!!! ATTTTTAGGTTCTTGCTAGG+TGG - chr4_1:9897140-9897159 Msa0534450:CDS 35.0%
GGAAATGCAAAGTTGTGTTA+GGG + chr4_1:9897172-9897191 None:intergenic 35.0%
AGGAAATGCAAAGTTGTGTT+AGG + chr4_1:9897173-9897192 None:intergenic 35.0%
! TTTGGCTTCATCCATATTTC+TGG + chr4_1:9897352-9897371 None:intergenic 35.0%
TACTTACTCATTCGATTCCT+AGG + chr4_1:9897406-9897425 None:intergenic 35.0%
GGATTGAATCAAATGAGAAC+AGG - chr4_1:9897545-9897564 Msa0534450:intron 35.0%
AATGTCTCTCATAGTTGGAA+AGG - chr4_1:9897626-9897645 Msa0534450:CDS 35.0%
ATGTCTCTCATAGTTGGAAA+GGG - chr4_1:9897627-9897646 Msa0534450:CDS 35.0%
TGATCAAGTCGTCATATTAG+CGG + chr4_1:9897807-9897826 None:intergenic 35.0%
ACAAGGAAAACGAATATGTG+TGG - chr4_1:9897845-9897864 Msa0534450:intron 35.0%
AGTAGTTAAGTAGAAGTTCG+CGG + chr4_1:9897960-9897979 None:intergenic 35.0%
AATGAATCATGGTCAAGAGA+AGG + chr4_1:9898122-9898141 None:intergenic 35.0%
! CTCTTGACCATGATTCATTT+TGG - chr4_1:9898123-9898142 Msa0534450:intron 35.0%
GATCAGTCCAAAATGAATCA+TGG + chr4_1:9898133-9898152 None:intergenic 35.0%
! ATTCATTTTGGACTGATCCA+AGG - chr4_1:9898135-9898154 Msa0534450:intron 35.0%
CCACATGATTGTGAAATATG+AGG + chr4_1:9898169-9898188 None:intergenic 35.0%
CCTCATATTTCACAATCATG+TGG - chr4_1:9898166-9898185 Msa0534450:intron 35.0%
AACCGAGAAAATCAAACAGA+CGG + chr4_1:9898470-9898489 None:intergenic 35.0%
CAACTGTATACTTAAGAGCT+TGG + chr4_1:9898672-9898691 None:intergenic 35.0%
TTGGAAAGACTTTGGTTGAT+AGG - chr4_1:9898704-9898723 Msa0534450:intron 35.0%
CTTAAATGAAGGGCAACAAA+TGG + chr4_1:9898748-9898767 None:intergenic 35.0%
! CATTTGTTGCCCTTCATTTA+AGG - chr4_1:9898746-9898765 Msa0534450:intron 35.0%
AGAAACTACTCGAAACGTTT+CGG - chr4_1:9898808-9898827 Msa0534450:intron 35.0%
CTTTCTCGTATCTGCATTAT+AGG + chr4_1:9899101-9899120 None:intergenic 35.0%
CCTCCTCAATAGTAAGATTA+TGG + chr4_1:9899149-9899168 None:intergenic 35.0%
CCATAATCTTACTATTGAGG+AGG - chr4_1:9899146-9899165 Msa0534450:intron 35.0%
ACAACTATCTACATTGTTGC+AGG - chr4_1:9899315-9899334 Msa0534450:intron 35.0%
ATACTATTGCCACCATAGAT+AGG + chr4_1:9899342-9899361 None:intergenic 35.0%
TATCTATGGTGGCAATAGTA+TGG - chr4_1:9899341-9899360 Msa0534450:intron 35.0%
GTCGAATGAGTAAAGACATT+AGG + chr4_1:9899387-9899406 None:intergenic 35.0%
!! CGATTTTGATATGGCTTGAA+AGG + chr4_1:9899435-9899454 None:intergenic 35.0%
GGAAAACTATCAATCCTGAT+AGG - chr4_1:9899565-9899584 Msa0534450:intron 35.0%
AACTATCAATCCTGATAGGT+AGG - chr4_1:9899569-9899588 Msa0534450:intron 35.0%
! GTTTTGTAAACCTACCTATC+AGG + chr4_1:9899582-9899601 None:intergenic 35.0%
GGATTAATTTAACGGTTGAG+AGG + chr4_1:9899705-9899724 None:intergenic 35.0%
!! AAAGAAATTTTGGGTGTGGT+TGG + chr4_1:9899775-9899794 None:intergenic 35.0%
CGTCTAATTGATCAATCAGT+CGG + chr4_1:9899887-9899906 None:intergenic 35.0%
ACTGATTGATCAATTAGACG+AGG - chr4_1:9899887-9899906 Msa0534450:CDS 35.0%
CTGATTGATCAATTAGACGA+GGG - chr4_1:9899888-9899907 Msa0534450:CDS 35.0%
AGTTTGCATTCAAATCGACT+AGG - chr4_1:9899948-9899967 Msa0534450:CDS 35.0%
! CTAGACCAAAGATTTGGTAT+TGG - chr4_1:9900086-9900105 Msa0534450:CDS 35.0%
TTTGGCACAACCTTAAAGTA+AGG - chr4_1:9900185-9900204 Msa0534450:CDS 35.0%
ATGTGAGTTGCCTTACTTTA+AGG + chr4_1:9900198-9900217 None:intergenic 35.0%
AAATGTGCTTTCCTTTGTCA+AGG - chr4_1:9900230-9900249 Msa0534450:five_prime_UTR 35.0%
! TGTTTGTTGAAGCTGTTGCT+GGG + chr4_1:9895601-9895620 None:intergenic 40.0%
TTCAACAAACACAAGCCCAA+GGG - chr4_1:9895610-9895629 Msa0534450:exon 40.0%
!! GTTCTAGTTCGGAGAAATCT+GGG + chr4_1:9895718-9895737 None:intergenic 40.0%
!! TGTTCTAGTTCGGAGAAATC+TGG + chr4_1:9895719-9895738 None:intergenic 40.0%
GTTTCGTTGTTTATTGGTGG+TGG - chr4_1:9895968-9895987 Msa0534450:intron 40.0%
! GTGGTGGTGTTGAAATGAAT+GGG - chr4_1:9895984-9896003 Msa0534450:intron 40.0%
! AATCTCTCAAGGACCCTTTT+AGG + chr4_1:9896121-9896140 None:intergenic 40.0%
TAAAAGGGTCCTTGAGAGAT+TGG - chr4_1:9896120-9896139 Msa0534450:intron 40.0%
!!! CTTTGTTTTCTGGGATAAGG+AGG - chr4_1:9896532-9896551 Msa0534450:CDS 40.0%
!!! AGGTCACGTTTTTGAAACTG+AGG - chr4_1:9896552-9896571 Msa0534450:CDS 40.0%
TACTTCTACATCACGCACTT+TGG + chr4_1:9896792-9896811 None:intergenic 40.0%
!! TGTTGGTTCGACACAAAACA+AGG - chr4_1:9896893-9896912 Msa0534450:intron 40.0%
TTGTCTCAGTTGTAATGACC+TGG - chr4_1:9896957-9896976 Msa0534450:intron 40.0%
TGATGTCTCCATCGAATAAG+TGG - chr4_1:9897043-9897062 Msa0534450:CDS 40.0%
!! CTACCGACTTGTTACATGTA+AGG + chr4_1:9897105-9897124 None:intergenic 40.0%
CGCGTGAGAAAATCACAAAA+AGG + chr4_1:9897193-9897212 None:intergenic 40.0%
TCAGAACCGTCAAAAACCAA+CGG - chr4_1:9897497-9897516 Msa0534450:intron 40.0%
!!! AGATAGCCGTTGGTTTTTGA+CGG + chr4_1:9897506-9897525 None:intergenic 40.0%
ATGAACTAGAAGATAGCCGT+TGG + chr4_1:9897516-9897535 None:intergenic 40.0%
!! CTTCTAGTTCATGCAAATGG+TGG - chr4_1:9897524-9897543 Msa0534450:intron 40.0%
TGTGAGCTCGTCAAAAAACA+AGG - chr4_1:9897828-9897847 Msa0534450:intron 40.0%
TCTCGTCTTTACGTTTGAGA+TGG + chr4_1:9897933-9897952 None:intergenic 40.0%
TGACATGCAGATATGTGACA+TGG - chr4_1:9898058-9898077 Msa0534450:intron 40.0%
AATCATGGTCAAGAGAAGGA+AGG + chr4_1:9898118-9898137 None:intergenic 40.0%
ATCTGTGAAGCCTATTGTCA+AGG - chr4_1:9898349-9898368 Msa0534450:CDS 40.0%
!! GTCCGTCTGTTTGATTTTCT+CGG - chr4_1:9898465-9898484 Msa0534450:intron 40.0%
TCCAATGTTGAAGAGACACA+AGG - chr4_1:9898561-9898580 Msa0534450:intron 40.0%
ACCTTGTGTCTCTTCAACAT+TGG + chr4_1:9898565-9898584 None:intergenic 40.0%
GATTCAAGACTTGCCAACAA+TGG - chr4_1:9898604-9898623 Msa0534450:intron 40.0%
AGATGAAGCAAGACCATTGT+TGG + chr4_1:9898620-9898639 None:intergenic 40.0%
ACAGTTGAGATTGAAGAGCT+TGG - chr4_1:9898685-9898704 Msa0534450:intron 40.0%
TGAAGAGCTTGGAAAGACTT+TGG - chr4_1:9898696-9898715 Msa0534450:intron 40.0%
GAGTGAGATACACCAAATAC+AGG + chr4_1:9898918-9898937 None:intergenic 40.0%
!!! AAAGACATGCTGGCTTTTAC+TGG - chr4_1:9899117-9899136 Msa0534450:intron 40.0%
TGAGGTATGAAGTGAAGCAT+TGG - chr4_1:9899187-9899206 Msa0534450:intron 40.0%
!! GTATGAAGTGAAGCATTGGA+AGG - chr4_1:9899191-9899210 Msa0534450:intron 40.0%
AGAAAAATGGCTGCTTCTCT+TGG + chr4_1:9899270-9899289 None:intergenic 40.0%
!!! AGAAGCAGCCATTTTTCTCA+AGG - chr4_1:9899272-9899291 Msa0534450:intron 40.0%
ATTGTTGCAGGACCTATCTA+TGG - chr4_1:9899327-9899346 Msa0534450:intron 40.0%
ATTAGGATATTCAGCGCGAA+AGG + chr4_1:9899370-9899389 None:intergenic 40.0%
! TTATGATGGAAACATGGCCA+AGG - chr4_1:9899509-9899528 Msa0534450:intron 40.0%
CAAGGTCATAGAAGGTTTGA+AGG - chr4_1:9899537-9899556 Msa0534450:intron 40.0%
!! TTAATCCAACCTCTAAGGCT+TGG + chr4_1:9899661-9899680 None:intergenic 40.0%
!!! TTTTTTGCCAACCCTTTTCC+TGG - chr4_1:9900020-9900039 Msa0534450:CDS 40.0%
GTGCTCCAATACCAAATCTT+TGG + chr4_1:9900094-9900113 None:intergenic 40.0%
CATCAAATAGGCCTTGACAA+AGG + chr4_1:9900244-9900263 None:intergenic 40.0%
TTGTCAAGGCCTATTTGATG+AGG - chr4_1:9900244-9900263 Msa0534450:intron 40.0%
CTTCAACAGCCTCATCAAAT+AGG + chr4_1:9900256-9900275 None:intergenic 40.0%
GAGGCTGTTGAAGAATCAAA+AGG - chr4_1:9900263-9900282 Msa0534450:intron 40.0%
AGAGAAAGAGAGGAGAGAGA+GGG + chr4_1:9895373-9895392 None:intergenic 45.0%
! GTGTTTGTTGAAGCTGTTGC+TGG + chr4_1:9895602-9895621 None:intergenic 45.0%
CTTCAACAAACACAAGCCCA+AGG - chr4_1:9895609-9895628 Msa0534450:three_prime_UTR 45.0%
! ACACGTCTACGTGTTGTTGT+GGG + chr4_1:9895644-9895663 None:intergenic 45.0%
! TACACGTCTACGTGTTGTTG+TGG + chr4_1:9895645-9895664 None:intergenic 45.0%
AAGAGAAAGTAGCGCGTGAT+TGG + chr4_1:9895812-9895831 None:intergenic 45.0%
TCTTCTTACGTTGTCCGGTT+CGG - chr4_1:9895859-9895878 Msa0534450:CDS 45.0%
TTCCGGTCTGGAAAAAACGT+GGG - chr4_1:9895890-9895909 Msa0534450:intron 45.0%
! GGTGGTGGTGTTGAAATGAA+TGG - chr4_1:9895983-9896002 Msa0534450:intron 45.0%
AAGATTGGGCTTCTGCTCAA+AGG - chr4_1:9896053-9896072 Msa0534450:intron 45.0%
AGATTGGGCTTCTGCTCAAA+GGG - chr4_1:9896054-9896073 Msa0534450:intron 45.0%
GACTTACAGCCAATCTCTCA+AGG + chr4_1:9896132-9896151 None:intergenic 45.0%
!! GGTGTTTGGTGCACAGAATT+TGG - chr4_1:9896573-9896592 Msa0534450:CDS 45.0%
TCTCAGTTGTAATGACCTGG+AGG - chr4_1:9896960-9896979 Msa0534450:intron 45.0%
ATCAATGTGTGTCACGACCT+AGG - chr4_1:9897386-9897405 Msa0534450:CDS 45.0%
! TTTTCGAACTGAAGCCGATC+AGG - chr4_1:9897904-9897923 Msa0534450:intron 45.0%
! GTTTGAGATGGTGTCCTGAT+CGG + chr4_1:9897921-9897940 None:intergenic 45.0%
GATATGTGACATGGTAGCTG+TGG - chr4_1:9898067-9898086 Msa0534450:intron 45.0%
AAGAGAAGGAAGGACAAGTG+TGG + chr4_1:9898108-9898127 None:intergenic 45.0%
TCGTTGAGTACTTGCCTGTT+CGG - chr4_1:9898321-9898340 Msa0534450:intron 45.0%
TTCACAGATGCATACCGAAC+AGG + chr4_1:9898338-9898357 None:intergenic 45.0%
ACACCTTTGACCATGAAACC+GGG + chr4_1:9898376-9898395 None:intergenic 45.0%
CACACCTTTGACCATGAAAC+CGG + chr4_1:9898377-9898396 None:intergenic 45.0%
CAGATACGAGAAAGACATGC+TGG - chr4_1:9899107-9899126 Msa0534450:intron 45.0%
TCTTACTATTGAGGAGGCTG+AGG - chr4_1:9899152-9899171 Msa0534450:intron 45.0%
CTGAGGAACTTAGGGTTATG+AGG - chr4_1:9899169-9899188 Msa0534450:intron 45.0%
! CTGCTTCTCTTGGTGACATA+GGG + chr4_1:9899260-9899279 None:intergenic 45.0%
!!! AGCCATTTTTCTCAAGGCCA+TGG - chr4_1:9899278-9899297 Msa0534450:intron 45.0%
!!! GCCATTTTTCTCAAGGCCAT+GGG - chr4_1:9899279-9899298 Msa0534450:intron 45.0%
!! CCATTTTTCTCAAGGCCATG+GGG - chr4_1:9899280-9899299 Msa0534450:intron 45.0%
!! GCAGCGAGACGATTTTGATA+TGG + chr4_1:9899444-9899463 None:intergenic 45.0%
TCAAAATCGTCTCGCTGCTT+TGG - chr4_1:9899446-9899465 Msa0534450:intron 45.0%
AGAGATAGAGAGGGCTATAG+AGG - chr4_1:9899747-9899766 Msa0534450:CDS 45.0%
! TCTCCTACCTGTCTAAGGTA+AGG + chr4_1:9899978-9899997 None:intergenic 45.0%
TACACACGCAACCAGGAAAA+GGG + chr4_1:9900034-9900053 None:intergenic 45.0%
TTACACACGCAACCAGGAAA+AGG + chr4_1:9900035-9900054 None:intergenic 45.0%
AAGGCAACTCACATGAGTTG+TGG - chr4_1:9900204-9900223 Msa0534450:exon 45.0%
!!! TTTTGAATTATATTAAATTT+TGG - chr4_1:9896413-9896432 Msa0534450:CDS 5.0%
!! TTAAAATTATATTTAAAGAT+TGG + chr4_1:9897681-9897700 None:intergenic 5.0%
!!! AATCTTTAAATATAATTTTA+AGG - chr4_1:9897680-9897699 Msa0534450:intron 5.0%
GAGAGGGGGAGAGAAATCTA+AGG + chr4_1:9895357-9895376 None:intergenic 50.0%
AGAAAGAGAGGAGAGAGAGG+GGG + chr4_1:9895371-9895390 None:intergenic 50.0%
GAGAAAGAGAGGAGAGAGAG+GGG + chr4_1:9895372-9895391 None:intergenic 50.0%
GAGAGAAAGAGAGGAGAGAG+AGG + chr4_1:9895374-9895393 None:intergenic 50.0%
GGTTTGGGAGAGAGAAAGAG+AGG + chr4_1:9895383-9895402 None:intergenic 50.0%
! AGTGATGATGAACATGCGCG+TGG + chr4_1:9895784-9895803 None:intergenic 50.0%
GTTCCGGTCTGGAAAAAACG+TGG - chr4_1:9895889-9895908 Msa0534450:intron 50.0%
!! CTATCGATTTAGGGTCCTCC+AGG + chr4_1:9896978-9896997 None:intergenic 50.0%
CACCTTTGACCATGAAACCG+GGG + chr4_1:9898375-9898394 None:intergenic 50.0%
CGGTTTCATGGTCAAAGGTG+TGG - chr4_1:9898375-9898394 Msa0534450:CDS 50.0%
TTGAGGAGGCTGAGGAACTT+AGG - chr4_1:9899160-9899179 Msa0534450:intron 50.0%
TGAGGAGGCTGAGGAACTTA+GGG - chr4_1:9899161-9899180 Msa0534450:intron 50.0%
! GCTGCTTCTCTTGGTGACAT+AGG + chr4_1:9899261-9899280 None:intergenic 50.0%
! CCCCATGGCCTTGAGAAAAA+TGG + chr4_1:9899283-9899302 None:intergenic 50.0%
!! TGTAGTTGAAGGGTACCCCA+TGG + chr4_1:9899298-9899317 None:intergenic 50.0%
GTTGCAGGACCTATCTATGG+TGG - chr4_1:9899330-9899349 Msa0534450:intron 50.0%
TCATTCGACCCTTGCAACTG+AGG - chr4_1:9899398-9899417 Msa0534450:intron 50.0%
TAGCTCCTCCTCAGTTGCAA+GGG + chr4_1:9899409-9899428 None:intergenic 50.0%
TGATGGAAACATGGCCAAGG+CGG - chr4_1:9899512-9899531 Msa0534450:intron 50.0%
! TAAGGCTTGGTTGGAGGAGA+CGG + chr4_1:9899648-9899667 None:intergenic 50.0%
!! AACCTCTAAGGCTTGGTTGG+AGG + chr4_1:9899654-9899673 None:intergenic 50.0%
TCCAACCAAGCCTTAGAGGT+TGG - chr4_1:9899653-9899672 Msa0534450:CDS 50.0%
!! TCCAACCTCTAAGGCTTGGT+TGG + chr4_1:9899657-9899676 None:intergenic 50.0%
TAGACGAGGGCTCGTTATCT+TGG - chr4_1:9899901-9899920 Msa0534450:CDS 50.0%
AGACGAGGGCTCGTTATCTT+GGG - chr4_1:9899902-9899921 Msa0534450:CDS 50.0%
AGGTGCACCTTACCTTAGAC+AGG - chr4_1:9899968-9899987 Msa0534450:CDS 50.0%
GCACCTTACCTTAGACAGGT+AGG - chr4_1:9899972-9899991 Msa0534450:CDS 50.0%
GTGACTCTCCTACCTGTCTA+AGG + chr4_1:9899983-9900002 None:intergenic 50.0%
!! GACTTGTTACACACGCAACC+AGG + chr4_1:9900041-9900060 None:intergenic 50.0%
AAACACAAGCCCAAGGGTCG+CGG - chr4_1:9895616-9895635 Msa0534450:exon 55.0%
GATGATGAACATGCGCGTGG+TGG + chr4_1:9895781-9895800 None:intergenic 55.0%
!!! GGCCCACGTTTTTTCCAGAC+CGG + chr4_1:9895895-9895914 None:intergenic 55.0%
CGTGGGCCGAAAGATCTTTG+CGG - chr4_1:9895907-9895926 Msa0534450:intron 55.0%
GAAGCCTATTGTCAAGGCCC+CGG - chr4_1:9898355-9898374 Msa0534450:CDS 55.0%
GAAACCGGGGCCTTGACAAT+AGG + chr4_1:9898362-9898381 None:intergenic 55.0%
TTGTCAAGGCCCCGGTTTCA+TGG - chr4_1:9898363-9898382 Msa0534450:CDS 55.0%
!! AGCGTCGATCGACGATTGCA+AGG - chr4_1:9899228-9899247 Msa0534450:intron 55.0%
GTCGATCGACGATTGCAAGG+AGG - chr4_1:9899231-9899250 Msa0534450:intron 55.0%
TTCGACCCTTGCAACTGAGG+AGG - chr4_1:9899401-9899420 Msa0534450:intron 55.0%
CTAGCTCCTCCTCAGTTGCA+AGG + chr4_1:9899410-9899429 None:intergenic 55.0%
TCTATGACCTTGCACCGCCT+TGG + chr4_1:9899529-9899548 None:intergenic 55.0%
AGGCGGTGCAAGGTCATAGA+AGG - chr4_1:9899529-9899548 Msa0534450:intron 55.0%
TTGGTTGGAGGAGACGGAGA+GGG + chr4_1:9899642-9899661 None:intergenic 55.0%
CTCCTCCAACCAAGCCTTAG+AGG - chr4_1:9899649-9899668 Msa0534450:CDS 55.0%
CACGCAACCAGGAAAAGGGT+TGG + chr4_1:9900030-9900049 None:intergenic 55.0%
ACCGTCGTTCGCGATGTCGT+CGG - chr4_1:9895571-9895590 Msa0534450:three_prime_UTR 60.0%
AACACAAGCCCAAGGGTCGC+GGG - chr4_1:9895617-9895636 Msa0534450:exon 60.0%
!! CGTTGTCCGGTTCGGTTCAG+TGG - chr4_1:9895867-9895886 Msa0534450:intron 60.0%
CCGGAACCACTGAACCGAAC+CGG + chr4_1:9895876-9895895 None:intergenic 60.0%
!! CCGGTTCGGTTCAGTGGTTC+CGG - chr4_1:9895873-9895892 Msa0534450:intron 60.0%
TCGGTTCAGTGGTTCCGGTC+TGG - chr4_1:9895878-9895897 Msa0534450:intron 60.0%
GGCCCCGGTTTCATGGTCAA+AGG - chr4_1:9898370-9898389 Msa0534450:CDS 60.0%
AACATGGCCAAGGCGGTGCA+AGG - chr4_1:9899519-9899538 Msa0534450:intron 60.0%
CTTGGTTGGAGGAGACGGAG+AGG + chr4_1:9899643-9899662 None:intergenic 60.0%
CCCGACGACATCGCGAACGA+CGG + chr4_1:9895575-9895594 None:intergenic 65.0%
CCGTCGTTCGCGATGTCGTC+GGG - chr4_1:9895572-9895591 Msa0534450:three_prime_UTR 65.0%
TCGTTCGCGATGTCGTCGGG+CGG - chr4_1:9895575-9895594 Msa0534450:three_prime_UTR 65.0%
TTGTGGGACCCGCGACCCTT+GGG + chr4_1:9895628-9895647 None:intergenic 65.0%
AGGAGACGGAGAGGGTGGAG+AGG + chr4_1:9899634-9899653 None:intergenic 65.0%
GTTGGAGGAGACGGAGAGGG+TGG + chr4_1:9899639-9899658 None:intergenic 65.0%
GTTGTGGGACCCGCGACCCT+TGG + chr4_1:9895629-9895648 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 9895314 9900436 9895314 ID=Msa0534450;Name=Msa0534450
chr4_1 mRNA 9895314 9900436 9895314 ID=Msa0534450-mRNA-1;Parent=Msa0534450;Name=Msa0534450-mRNA-1;_AED=0.08;_eAED=0.08;_QI=194|1|1|1|0.87|0.77|9|315|643
chr4_1 exon 9895314 9895878 9895314 ID=Msa0534450-mRNA-1:exon:3207;Parent=Msa0534450-mRNA-1
chr4_1 exon 9896164 9896640 9896164 ID=Msa0534450-mRNA-1:exon:3206;Parent=Msa0534450-mRNA-1
chr4_1 exon 9896983 9897215 9896983 ID=Msa0534450-mRNA-1:exon:3205;Parent=Msa0534450-mRNA-1
chr4_1 exon 9897359 9897491 9897359 ID=Msa0534450-mRNA-1:exon:3204;Parent=Msa0534450-mRNA-1
chr4_1 exon 9897594 9897682 9897594 ID=Msa0534450-mRNA-1:exon:3203;Parent=Msa0534450-mRNA-1
chr4_1 exon 9898182 9898249 9898182 ID=Msa0534450-mRNA-1:exon:3202;Parent=Msa0534450-mRNA-1
chr4_1 exon 9898332 9898404 9898332 ID=Msa0534450-mRNA-1:exon:3201;Parent=Msa0534450-mRNA-1
chr4_1 exon 9899606 9900261 9899606 ID=Msa0534450-mRNA-1:exon:3200;Parent=Msa0534450-mRNA-1
chr4_1 exon 9900290 9900436 9900290 ID=Msa0534450-mRNA-1:exon:3199;Parent=Msa0534450-mRNA-1
chr4_1 five_prime_UTR 9900290 9900436 9900290 ID=Msa0534450-mRNA-1:five_prime_utr;Parent=Msa0534450-mRNA-1
chr4_1 five_prime_UTR 9900215 9900261 9900215 ID=Msa0534450-mRNA-1:five_prime_utr;Parent=Msa0534450-mRNA-1
chr4_1 CDS 9899606 9900214 9899606 ID=Msa0534450-mRNA-1:cds;Parent=Msa0534450-mRNA-1
chr4_1 CDS 9898332 9898404 9898332 ID=Msa0534450-mRNA-1:cds;Parent=Msa0534450-mRNA-1
chr4_1 CDS 9898182 9898249 9898182 ID=Msa0534450-mRNA-1:cds;Parent=Msa0534450-mRNA-1
chr4_1 CDS 9897594 9897682 9897594 ID=Msa0534450-mRNA-1:cds;Parent=Msa0534450-mRNA-1
chr4_1 CDS 9897359 9897491 9897359 ID=Msa0534450-mRNA-1:cds;Parent=Msa0534450-mRNA-1
chr4_1 CDS 9896983 9897215 9896983 ID=Msa0534450-mRNA-1:cds;Parent=Msa0534450-mRNA-1
chr4_1 CDS 9896164 9896640 9896164 ID=Msa0534450-mRNA-1:cds;Parent=Msa0534450-mRNA-1
chr4_1 CDS 9895629 9895878 9895629 ID=Msa0534450-mRNA-1:cds;Parent=Msa0534450-mRNA-1
chr4_1 three_prime_UTR 9895314 9895628 9895314 ID=Msa0534450-mRNA-1:three_prime_utr;Parent=Msa0534450-mRNA-1
Gene Sequence

>Msa0534450

ATGCGATTATTCATAGTTCGTAAATTTAGCATAATACCGTCGTTCGCGATGTCGTCGGGCGGCCCAGCAACAGCTTCAACAAACACAAGCCCAAGGGTCGCGGGTCCCACAACAACACGTAGACGTGTAGCAGACAACAACGTTAACAATGATACAGAAAAACAACAGCAACAAGCTTTCCCAGATTTCTCCGAACTAGAACATCAAGACAATGATCCTGTTTCATCATTATTAAATTTAAACCACCACGCGCATGTTCATCATCACTTACATCCAATCACGCGCTACTTTCTCTTACGCGCCCGCATTTTCATAGAACATTTTCTTCTTACGTTGTCCGGTTCGGTTCAGTGGTTCCGGTCTGGAAAAAACGTGGGCCGAAAGATCTTTGCGGTTTTAATTATGTTGGTTGTTATGTCGGTTTTTTTTAAGGTTTCGTTGTTTATTGGTGGTGGTGTTGAAATGAATGGGAAAAAAAGTATTGAAAATGGACAATTGATTTTGCAACGGTTTAAAGAAGATTGGGCTTCTGCTCAAAGGGTTGTTACTGAAGAATCTTCTGAAACTCATGAAACTTCTATGCCTAAAAGGGTCCTTGAGAGATTGGCTACTCCAGAAATATGGATGAAGCCAAACAGTGACAAGTATTATCAATGTGTGTCACGACCTAGGAATCGAATGAAACCGTCAAAAACCAACGGCTATCTTCTAGTTCATGCAAATGGTGGATTGAATCAAATGAGAACAGGGATATGTGACATGGTAGCTGTGGCAAAAATAATGAATGCCACACTTGTCCTTCCTTCTCTTGACCATGATTCATTTTGGACTGATCCAAGTGACTTCAAAGATATTTTTGATTGGAGGCACTTCATGAAAGTTTTAAAAGAAGACATCGATATCGTTGAGTACTTGCCTGTTCGGTATGCATCTGTGAAGCCTATTGTCAAGGCCCCGGTTTCATGGTCAAAGGCTAGTTACTATAGAAGTGAGATTCTTCCAATGTTGAAGAGACACAAGGTTGTACAATTTACTCACACAGATTCAAGACTTGCCAACAATGGTCTTGCTTCATCTATTCAGAAGCTGAGATGTCGTGCCAATTACCAAGCTCTTAAGTATACAGTTGAGATTGAAGAGCTTGGAAAGACTTTGGTTGATAGGCTAAGAAATAACGATGAGCCATTTGTTGCCCTTCATTTAAGATACGAGAAAGACATGCTGGCTTTTACTGGCTGTAACCATAATCTTACTATTGAGGAGGCTGAGGAACTTAGGGTTATGAGGTATGAAGTGAAGCATTGGAAGGAAAAAGAGATTGATAGCGTCGATCGACGATTGCAAGGAGGTTGCCCTATGTCACCAAGAGAAGCAGCCATTTTTCTCAAGGCCATGGGGTACCCTTCAACTACAACTATCTACATTGTTGCAGGACCTATCTATGGTGGCAATAGTATGGCAGCCTTTCGCGCTGAATATCCTAATGTCTTTACTCATTCGACCCTTGCAACTGAGGAGGAGCTAGAGCCTTTCAAGCCATATCAAAATCGTCTCGCTGCTTTGGATTATATTGTTGCCCTTGAAAGTGATGTCTTTGTTTATACTTATGATGGAAACATGGCCAAGGCGGTGCAAGGTCATAGAAGGTTTGAAGGATTTCGGAAAACTATCAATCCTGATAGATCAAATTTTGTCCGACTGATTGATCAATTAGACGAGGGCTCGTTATCTTGGGAAAAATTTTCCTTAGAAGTTAAAAGTTTGCATTCAAATCGACTAGGTGCACCTTACCTTAGACAGGTAGGAGAGTCACCAAGAACAGAAGAGAATTTTTTTGCCAACCCTTTTCCTGGTTGCGTGTGTAACAAGTCACAAGAGCTAATTACAAGTCAAAAACTAGACCAAAGATTTGGTATTGGAGCACAAAAATGA
Protein sequence

>Msa0534450

MRLFIVRKFSIIPSFAMSSGGPATASTNTSPRVAGPTTTRRRVADNNVNNDTEKQQQQAFPDFSELEHQDNDPVSSLLNLNHHAHVHHHLHPITRYFLLRARIFIEHFLLTLSGSVQWFRSGKNVGRKIFAVLIMLVVMSVFFKVSLFIGGGVEMNGKKSIENGQLILQRFKEDWASAQRVVTEESSETHETSMPKRVLERLATPEIWMKPNSDKYYQCVSRPRNRMKPSKTNGYLLVHANGGLNQMRTGICDMVAVAKIMNATLVLPSLDHDSFWTDPSDFKDIFDWRHFMKVLKEDIDIVEYLPVRYASVKPIVKAPVSWSKASYYRSEILPMLKRHKVVQFTHTDSRLANNGLASSIQKLRCRANYQALKYTVEIEELGKTLVDRLRNNDEPFVALHLRYEKDMLAFTGCNHNLTIEEAEELRVMRYEVKHWKEKEIDSVDRRLQGGCPMSPREAAIFLKAMGYPSTTTIYIVAGPIYGGNSMAAFRAEYPNVFTHSTLATEEELEPFKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRSNFVRLIDQLDEGSLSWEKFSLEVKSLHSNRLGAPYLRQVGESPRTEENFFANPFPGCVCNKSQELITSQKLDQRFGIGAQK*