AlfalfaGEDB | Msa1156490

M. sativa cultivar zhongmu-4 / Msa1156490

KEGG: K11820|K13691|K21374
GO: GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
PFAM: PF00201.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156490	XP_003624245.2	95.425	459	20	1	1	459	29	486	0.0	910

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156490	sp\|K7NBW3\|74AC1_SIRGR	45.595	454	237	7	11	459	6	454	6.00e-132	392

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156490	A0A396H1P4	95.425	459	20	1	1	459	29	486	0.0	910

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004480	Msa1156490	0.804326	2.279475e-49	-8.615850e-47
Msa0033970	Msa1156490	0.818556	1.843130e-52	-8.615850e-47
Msa0043850	Msa1156490	0.802251	6.129488e-49	-8.615850e-47
Msa0086190	Msa1156490	0.845521	3.856333e-59	-8.615850e-47
Msa0087550	Msa1156490	0.825856	3.730154e-54	-8.615850e-47
Msa0128030	Msa1156490	0.810599	1.063695e-50	-8.615850e-47
Msa0129640	Msa1156490	0.845666	3.523150e-59	-8.615850e-47
Msa0132430	Msa1156490	0.836322	1.001622e-56	-8.615850e-47
Msa0134270	Msa1156490	0.817933	2.549402e-52	-8.615850e-47
Msa0137980	Msa1156490	0.812549	4.009355e-51	-8.615850e-47

Showing 1 to 10 of 96 entries

Previous1 2 3 4 5…10Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156490	MtrunA17_Chr7g0249931	95.425	459	20	1	1	459	29	486	0.0	910
Msa1156490	MtrunA17_Chr7g0250001	66.883	462	142	6	1	461	1	452	0.0	622
Msa1156490	MtrunA17_Chr7g0249981	65.646	457	151	6	1	456	15	466	0.0	612
Msa1156490	MtrunA17_Chr7g0250021	87.462	327	40	1	1	327	1	326	0.0	602
Msa1156490	MtrunA17_Chr6g0464871	55.211	451	195	6	11	458	22	468	0.0	520
Msa1156490	MtrunA17_Chr6g0464881	52.412	456	210	6	4	456	3	454	3.74e-179	509
Msa1156490	MtrunA17_Chr6g0464841	54.222	450	199	6	12	458	11	456	6.06e-178	506
Msa1156490	MtrunA17_Chr6g0464921	53.261	460	206	8	1	456	1	455	3.56e-177	504
Msa1156490	MtrunA17_Chr6g0464861	52.784	449	206	5	12	458	11	455	4.76e-176	501
Msa1156490	MtrunA17_Chr5g0414331	45.111	450	237	8	10	456	11	453	7.52e-136	399

Showing 1 to 10 of 280 entries

Previous1 2 3 4 5…28Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156490	AT1G05675.1	42.444	450	247	8	12	454	6	450	6.43e-117	350
Msa1156490	AT1G05680.1	41.556	450	251	8	12	454	6	450	5.73e-116	348
Msa1156490	AT2G43820.1	40.523	459	246	12	9	456	4	446	5.21e-113	340
Msa1156490	AT2G31750.1	41.685	463	240	12	12	458	8	456	5.22e-113	340
Msa1156490	AT2G31750.2	41.595	464	241	12	11	458	7	456	3.29e-112	340
Msa1156490	AT2G43840.2	39.514	453	253	10	12	456	7	446	7.70e-112	337
Msa1156490	AT2G31790.1	40.305	459	258	9	8	456	4	456	8.86e-112	337
Msa1156490	AT2G43840.1	39.294	453	254	10	12	456	7	446	1.19e-110	334
Msa1156490	AT1G24100.1	40.129	466	240	15	12	456	11	458	3.85e-100	308
Msa1156490	AT4G15480.1	35.021	474	275	11	7	456	14	478	3.08e-85	270

Showing 1 to 10 of 135 entries

Previous1 2 3 4 5…14Next

Find 92 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCGACGAAAGTATAGAA+TGG	0.567278	7_4:-44751342	Msa1156490:CDS
AAAGTGGCATTGCAACAATT+GGG	0.549651	7_4:+44751023	None:intergenic
AACCTTTCTTGATTTGGGAA+TGG	0.494501	7_4:-44752101	Msa1156490:CDS
AATTGTATTTGAATAAATTT+TGG	0.160289	7_4:-44752423	Msa1156490:CDS
ACAATTGAGACCATTTCTGA+TGG	0.581663	7_4:-44752484	Msa1156490:CDS
ACATAAACAACAGACCGTTT+TGG	0.414991	7_4:+44751307	None:intergenic
ACATTGGAAGCTTTGAGTAT+AGG	0.385135	7_4:-44751049	Msa1156490:CDS
ACTCAATGAGGAACAAATAG+AGG	0.483111	7_4:-44751263	Msa1156490:CDS
ACTTCCTCAACTACAACCTA+GGG	0.613689	7_4:-44752161	Msa1156490:CDS
ACTTTGGCTGCAAGAGCGGT+TGG	0.544404	7_4:-44750824	Msa1156490:CDS

Showing 1 to 10 of 92 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGAAATGGTCTCAATTGTAA+TGG	+	chr7_4:44750935-44750954	None:intergenic	30.0%
TTTGTCAAAACCATCAGAAA+TGG	+	chr7_4:44750950-44750969	None:intergenic	30.0%
TTTATGATTCATTCATGCCT+TGG	-	chr7_4:44751097-44751116	Msa1156490:CDS	30.0%
CTAATATTCACAAAGCTGAT+TGG	-	chr7_4:44751352-44751371	Msa1156490:CDS	30.0%
GAAAGAGGTAAGTAAGAATT+TGG	-	chr7_4:44751404-44751423	Msa1156490:CDS	30.0%
AATGACTCTAAATGCTTTGT+AGG	-	chr7_4:44751939-44751958	Msa1156490:intron	30.0%
GGCTAAATAATAAGCCAAAA+CGG	-	chr7_4:44752100-44752119	Msa1156490:CDS	30.0%
TTATGTTTCATTTGGGAGTA+TGG	-	chr7_4:44752131-44752150	Msa1156490:CDS	30.0%
CAAAGTTTCTTGTAGATGTT+TGG	-	chr7_4:44752442-44752461	Msa1156490:CDS	30.0%
AGTGAGAAAAGATACATTGA+AGG	-	chr7_4:44752503-44752522	Msa1156490:CDS	30.0%

Showing 1 to 10 of 270 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	44750751	44752692	44750751	ID=Msa1156490;Name=Msa1156490
chr7_4	mRNA	44750751	44752692	44750751	ID=Msa1156490-mRNA-1;Parent=Msa1156490;Name=Msa1156490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0\|1\|1\|1\|2\|0\|463
chr7_4	exon	44752033	44752692	44752033	ID=Msa1156490-mRNA-1:exon:11575;Parent=Msa1156490-mRNA-1
chr7_4	exon	44750751	44751482	44750751	ID=Msa1156490-mRNA-1:exon:11574;Parent=Msa1156490-mRNA-1
chr7_4	CDS	44752033	44752692	44752033	ID=Msa1156490-mRNA-1:cds;Parent=Msa1156490-mRNA-1
chr7_4	CDS	44750751	44751482	44750751	ID=Msa1156490-mRNA-1:cds;Parent=Msa1156490-mRNA-1

Gene Sequence

>Msa1156490

ATGGAGAACAAAACCATATCCACCAAGAGTGTCCATTGTTTGGTGTTGCCATTTCCAGCACATGGTCACACTAATCCAATGCTAGAATTCTCCAAGCTTTTACAACAACAACATGGAGTCAAAGTAACACTTGTCACCACCCTTTCCTACTACAAAAACATACCTAAATTGCCAAATAATTCCATTACAATTGAGACCATTTCTGATGGTTTTGACAAAGGTGGAGTTGCTGAAGCAAAGGATTTTAAATTGTATTTGAATAAATTTTGGCAAGTTGGTCCACAATCTCTTGCTGATCTTATTAACAAACTTAACGCTAGATCAAACGACCATGTTGATTGTCTTATTTATGATTCATTCATGCCTTGGTGCTTAGATGTTGCAAAGAAATTTGGAATTGTTGGTGCTTCTTTTCTAACTCAAAATCTTGTTATGAATAGTATATACTATCATGTTCATTTGGGAAAGTTGAAACCTCCCTTTGTTGAGCAAGAGATTACTCTTCCTGCACTTCCTCAACTACAACCTAGGGACATGCCTTCTTTCTACTTTACATATGAAAAAGATCCAACCTTTCTTGATTTGGGAATGGCGCAGTTCTCTAATATTCACAAAGCTGATTGGATCCTTGGCAATTCCTTCTTTGAGCTGGAGAAAGAGGTGGCTGATTGGACAATGAAGACTTGGTCCAACTTTAGGACCGTAGGGCCTTGCCTACCGTATACATTTTTAGATAAGCGAGTTAAAGATGATGAAGATTATGGTATTGCACAATTAAAAAGCGACGAAAGTATAGAATGGCTAAATAATAAGCCAAAACGGTCTGTTGTTTATGTTTCATTTGGGAGTATGGCATCACTCAATGAGGAACAAATAGAGGAAGTAGCACATTGTTTGAAAGATTGTGGAAGTTACTTTTTATGGGTAGTGAAAACCTCTGAAGAGACTAAGCTCCCAAAAGACTTTGAAAAGAAATCAGAGAATGGCTTAGTTGTGGCATGGTGCTCCCAGTTAGAGGTTCTAGCTCATGAAGCAATAGGGTGTTTTGTAACACATTGTGGTTGGAATTCCACATTGGAAGCTTTGAGTATAGGAGTCCCAATTGTTGCAATGCCACTTTACTCAGACCAAGGCATTGATGCAAAGTTTCTTGTAGATGTTTGGAAAGTAGGAATTAGACCTTTAGTTGATGAGAAACAAATAGTGAGAAAAGATACATTGAAGGATTGTATATGTGAAATAATGGATATGAGTGAGAAAGGCAAAGAGATTATGAATAATGTCATGCAATGGAAGACTTTGGCTGCAAGAGCGGTTGGTAAAGATGGAAGTTCTCATAAAAACATGATAGAATTTGTGAATAGCTTGTTCCAAGTTTCAACCACAAATTAA

Protein sequence

>Msa1156490

MENKTISTKSVHCLVLPFPAHGHTNPMLEFSKLLQQQHGVKVTLVTTLSYYKNIPKLPNNSITIETISDGFDKGGVAEAKDFKLYLNKFWQVGPQSLADLINKLNARSNDHVDCLIYDSFMPWCLDVAKKFGIVGASFLTQNLVMNSIYYHVHLGKLKPPFVEQEITLPALPQLQPRDMPSFYFTYEKDPTFLDLGMAQFSNIHKADWILGNSFFELEKEVADWTMKTWSNFRTVGPCLPYTFLDKRVKDDEDYGIAQLKSDESIEWLNNKPKRSVVYVSFGSMASLNEEQIEEVAHCLKDCGSYFLWVVKTSEETKLPKDFEKKSENGLVVAWCSQLEVLAHEAIGCFVTHCGWNSTLEALSIGVPIVAMPLYSDQGIDAKFLVDVWKVGIRPLVDEKQIVRKDTLKDCICEIMDMSEKGKEIMNNVMQWKTLAARAVGKDGSSHKNMIEFVNSLFQVSTTN*