AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1156490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156490 MtrunA17_Chr7g0249931 95.425 459 20 1 1 459 29 486 0.0 910
Msa1156490 MtrunA17_Chr7g0250001 66.883 462 142 6 1 461 1 452 0.0 622
Msa1156490 MtrunA17_Chr7g0249981 65.646 457 151 6 1 456 15 466 0.0 612
Msa1156490 MtrunA17_Chr7g0250021 87.462 327 40 1 1 327 1 326 0.0 602
Msa1156490 MtrunA17_Chr6g0464871 55.211 451 195 6 11 458 22 468 0.0 520
Msa1156490 MtrunA17_Chr6g0464881 52.412 456 210 6 4 456 3 454 3.74e-179 509
Msa1156490 MtrunA17_Chr6g0464841 54.222 450 199 6 12 458 11 456 6.06e-178 506
Msa1156490 MtrunA17_Chr6g0464921 53.261 460 206 8 1 456 1 455 3.56e-177 504
Msa1156490 MtrunA17_Chr6g0464861 52.784 449 206 5 12 458 11 455 4.76e-176 501
Msa1156490 MtrunA17_Chr5g0414331 45.111 450 237 8 10 456 11 453 7.52e-136 399
Msa1156490 MtrunA17_Chr5g0414321 44.053 454 244 8 10 460 9 455 3.26e-133 392
Msa1156490 MtrunA17_Chr8g0380531 44.276 463 245 8 1 456 1 457 9.83e-130 383
Msa1156490 MtrunA17_Chr7g0249961 68.465 241 74 2 221 460 24 263 3.79e-116 342
Msa1156490 MtrunA17_Chr8g0377941 39.112 473 242 18 14 458 9 463 4.28e-89 279
Msa1156490 MtrunA17_Chr8g0377921 38.380 469 252 18 14 456 6 463 6.14e-89 279
Msa1156490 MtrunA17_Chr1g0207981 36.461 469 269 11 11 457 12 473 8.99e-86 271
Msa1156490 MtrunA17_Chr3g0121991 34.292 487 278 16 2 456 69 545 5.03e-82 263
Msa1156490 MtrunA17_Chr3g0098111 34.298 484 280 12 7 463 4 476 2.36e-81 259
Msa1156490 MtrunA17_Chr3g0122001 34.519 478 283 13 5 456 479 952 2.23e-78 262
Msa1156490 MtrunA17_Chr3g0122001 34.504 484 274 17 12 462 6 479 4.86e-77 258
Msa1156490 MtrunA17_Chr1g0161351 34.454 476 274 12 11 459 36 500 4.21e-76 246
Msa1156490 MtrunA17_Chr1g0207861 35.010 477 272 12 7 456 3 468 4.15e-75 243
Msa1156490 MtrunA17_Chr4g0053501 34.322 472 269 17 10 456 9 464 1.02e-74 243
Msa1156490 MtrunA17_Chr1g0207971 34.958 472 264 15 7 456 3 453 3.54e-74 240
Msa1156490 MtrunA17_Chr4g0053321 33.686 472 274 15 10 457 24 480 2.95e-71 234
Msa1156490 MtrunA17_Chr5g0393591 33.191 470 246 11 12 460 17 439 3.08e-71 233
Msa1156490 MtrunA17_Chr1g0207951 32.704 477 275 15 11 463 123 577 3.48e-69 238
Msa1156490 MtrunA17_Chr1g0207951 32.353 476 284 15 11 463 655 1115 7.33e-62 218
Msa1156490 MtrunA17_Chr8g0365811 33.686 472 273 13 14 456 497 957 9.33e-69 236
Msa1156490 MtrunA17_Chr8g0365811 32.158 482 285 13 7 456 4 475 6.21e-64 223
Msa1156490 MtrunA17_Chr1g0207931 32.365 482 243 13 4 463 84 504 1.41e-64 216
Msa1156490 MtrunA17_Chr1g0207831 32.258 465 288 12 11 456 7 463 1.89e-64 215
Msa1156490 MtrunA17_Chr3g0092641 31.303 476 283 14 7 449 6 470 9.24e-64 213
Msa1156490 MtrunA17_Chr5g0426431 31.753 485 296 13 1 457 1 478 2.36e-63 213
Msa1156490 MtrunA17_Chr5g0431361 29.565 460 291 13 12 456 12 453 4.80e-59 200
Msa1156490 MtrunA17_Chr7g0218791 31.828 465 268 17 12 454 5 442 5.17e-59 200
Msa1156490 MtrunA17_Chr5g0431401 29.694 458 290 13 12 456 10 448 1.13e-58 199
Msa1156490 MtrunA17_Chr2g0278711 29.234 496 282 16 7 457 6 477 2.28e-58 199
Msa1156490 MtrunA17_Chr7g0243681 30.408 490 285 17 7 456 6 479 3.88e-57 196
Msa1156490 MtrunA17_Chr5g0401721 28.898 481 298 15 7 456 3 470 2.79e-56 194
Msa1156490 MtrunA17_Chr3g0118671 29.339 484 297 15 9 458 3 475 3.20e-56 193
Msa1156490 MtrunA17_Chr5g0431441 29.895 475 284 16 12 460 18 469 5.70e-56 192
Msa1156490 MtrunA17_Chr3g0118711 28.719 484 294 15 12 458 13 482 7.22e-56 192
Msa1156490 MtrunA17_Chr7g0218811 29.935 461 277 13 12 454 15 447 1.73e-55 191
Msa1156490 MtrunA17_Chr3g0118691 28.601 479 301 13 12 458 15 484 6.02e-55 190
Msa1156490 MtrunA17_Chr5g0431421 28.446 457 299 12 12 457 10 449 2.10e-54 188
Msa1156490 MtrunA17_Chr7g0243631 28.994 507 288 19 1 456 1 486 2.31e-54 189
Msa1156490 MtrunA17_Chr5g0431371 28.289 456 299 12 12 456 10 448 4.83e-54 187
Msa1156490 MtrunA17_Chr3g0118701 27.423 485 299 15 12 458 15 484 5.84e-54 187
Msa1156490 MtrunA17_Chr5g0412111 28.782 476 297 16 12 460 5 465 1.55e-53 186
Msa1156490 MtrunA17_Chr8g0336331 28.270 474 300 14 7 449 5 469 1.93e-53 186
Msa1156490 MtrunA17_Chr4g0050341 28.866 485 294 14 3 448 10 482 2.33e-53 186
Msa1156490 MtrunA17_Chr7g0243771 30.864 486 281 18 11 456 5 475 2.65e-53 186
Msa1156490 MtrunA17_Chr7g0243951 27.236 492 302 14 7 456 6 483 4.20e-53 186
Msa1156490 MtrunA17_Chr3g0118771 27.926 487 302 14 8 458 17 490 5.23e-53 185
Msa1156490 MtrunA17_Chr7g0232411 29.752 484 281 16 8 454 2 463 3.21e-52 182
Msa1156490 MtrunA17_Chr7g0243931 27.833 503 303 15 1 456 1 490 8.31e-52 182
Msa1156490 MtrunA17_Chr3g0078841 26.526 475 314 13 12 457 10 478 8.98e-52 182
Msa1156490 MtrunA17_Chr7g0217881 28.261 460 299 13 9 449 7 454 1.40e-51 181
Msa1156490 MtrunA17_Chr5g0423981 27.922 462 275 15 12 449 10 437 1.75e-51 180
Msa1156490 MtrunA17_Chr7g0218821 28.753 473 278 15 12 454 5 448 3.51e-51 179
Msa1156490 MtrunA17_Chr7g0243781 28.773 497 292 19 8 462 5 481 3.53e-51 180
Msa1156490 MtrunA17_Chr7g0243801 29.532 491 291 18 6 456 1 476 4.59e-51 180
Msa1156490 MtrunA17_Chr6g0454191 27.254 477 305 15 7 449 5 473 1.02e-50 179
Msa1156490 MtrunA17_Chr4g0044511 29.268 492 288 17 5 456 33 504 1.50e-50 179
Msa1156490 MtrunA17_Chr7g0232391 29.752 484 271 16 8 449 2 458 1.91e-50 178
Msa1156490 MtrunA17_Chr6g0454401 27.197 478 308 14 5 449 3 473 2.19e-50 178
Msa1156490 MtrunA17_Chr5g0412101 28.719 484 304 15 1 455 1 472 2.67e-50 177
Msa1156490 MtrunA17_Chr7g0243761 30.505 495 253 20 7 456 6 454 2.80e-50 177
Msa1156490 MtrunA17_Chr3g0106231 30.490 469 291 15 7 463 13 458 3.53e-50 177
Msa1156490 MtrunA17_Chr7g0218831 27.609 460 288 14 12 454 6 437 3.75e-50 176
Msa1156490 MtrunA17_Chr7g0243871 28.131 487 293 18 8 456 5 472 4.10e-50 177
Msa1156490 MtrunA17_Chr8g0359821 27.197 478 301 14 7 449 5 470 5.85e-50 177
Msa1156490 MtrunA17_Chr6g0454301 26.337 486 311 13 7 457 258 731 7.16e-50 181
Msa1156490 MtrunA17_Chr6g0454301 32.105 190 119 4 265 449 38 222 3.76e-28 118
Msa1156490 MtrunA17_Chr4g0060511 28.831 496 293 18 7 456 6 487 1.36e-49 176
Msa1156490 MtrunA17_Chr6g0454341 26.059 472 314 13 7 449 5 470 1.63e-49 176
Msa1156490 MtrunA17_Chr4g0066221 27.455 499 277 17 16 459 15 483 1.72e-49 176
Msa1156490 MtrunA17_Chr6g0453961 27.311 476 296 15 12 449 19 482 4.83e-49 174
Msa1156490 MtrunA17_Chr7g0218841 27.174 460 289 14 12 453 6 437 5.59e-49 173
Msa1156490 MtrunA17_Chr7g0243861 27.439 492 302 12 7 456 9 487 6.74e-49 174
Msa1156490 MtrunA17_Chr8g0366391 30.242 496 284 21 8 460 5 481 6.85e-49 174
Msa1156490 MtrunA17_Chr8g0361371 28.926 484 273 16 15 453 10 467 1.78e-48 173
Msa1156490 MtrunA17_Chr4g0066201 27.926 487 293 18 5 456 11 474 2.75e-48 172
Msa1156490 MtrunA17_Chr6g0454211 27.216 485 304 14 2 449 287 759 3.13e-48 176
Msa1156490 MtrunA17_Chr6g0454211 25.000 204 123 4 168 369 61 236 1.10e-14 76.6
Msa1156490 MtrunA17_Chr6g0453951 27.273 473 305 12 9 449 54 519 4.24e-48 173
Msa1156490 MtrunA17_Chr6g0454321 26.623 462 304 14 7 439 5 460 5.47e-48 174
Msa1156490 MtrunA17_Chr6g0454331 25.255 491 316 14 6 457 1 479 5.66e-48 171
Msa1156490 MtrunA17_Chr3g0118661 27.033 492 299 17 8 458 9 481 8.35e-48 171
Msa1156490 MtrunA17_Chr7g0275681 28.452 478 286 16 12 449 12 473 9.68e-48 171
Msa1156490 MtrunA17_Chr5g0401851 27.734 512 291 19 1 459 1 486 9.91e-48 171
Msa1156490 MtrunA17_Chr5g0419771 27.218 496 311 12 5 459 29 515 1.29e-47 171
Msa1156490 MtrunA17_Chr7g0235051 28.512 484 272 15 7 454 6 451 1.59e-47 170
Msa1156490 MtrunA17_Chr4g0044481 32.071 396 229 12 12 392 27 397 2.68e-47 168
Msa1156490 MtrunA17_Chr6g0454261 26.415 477 304 14 9 449 7 472 3.68e-47 169
Msa1156490 MtrunA17_Chr6g0454141 26.667 480 303 16 7 449 5 472 3.70e-47 169
Msa1156490 MtrunA17_Chr4g0066261 27.767 497 273 19 16 456 15 481 6.38e-47 169
Msa1156490 MtrunA17_Chr5g0412131 28.810 479 287 18 12 455 12 471 7.50e-47 168
Msa1156490 MtrunA17_Chr4g0032331 31.330 466 279 20 12 456 7 452 2.42e-46 166
Msa1156490 MtrunA17_Chr5g0440421 29.150 494 303 15 9 459 7 496 3.64e-46 167
Msa1156490 MtrunA17_Chr8g0374901 24.851 503 306 15 1 456 1 478 7.09e-46 166
Msa1156490 MtrunA17_Chr8g0373301 26.907 472 286 14 12 447 9 457 1.34e-45 165
Msa1156490 MtrunA17_Chr7g0232401 26.653 484 302 12 8 456 2 467 1.44e-45 165
Msa1156490 MtrunA17_Chr5g0442601 26.000 500 302 16 9 460 401 880 1.66e-45 169
Msa1156490 MtrunA17_Chr5g0442601 26.627 338 189 9 81 392 29 333 3.36e-31 127
Msa1156490 MtrunA17_Chr5g0426401 33.113 302 186 8 168 460 20 314 2.77e-45 160
Msa1156490 MtrunA17_Chr4g0072771 27.004 474 305 14 2 455 15 467 6.57e-45 163
Msa1156490 MtrunA17_Chr6g0454361 26.722 479 310 14 12 457 11 481 8.86e-45 163
Msa1156490 MtrunA17_Chr6g0463891 27.551 490 297 14 10 456 10 484 1.42e-44 162
Msa1156490 MtrunA17_Chr8g0374971 25.000 500 311 15 1 456 1 480 1.62e-44 162
Msa1156490 MtrunA17_Chr8g0336741 29.303 488 267 17 11 452 12 467 1.65e-44 162
Msa1156490 MtrunA17_Chr8g0336651 29.253 482 281 13 9 453 3 461 1.69e-44 167
Msa1156490 MtrunA17_Chr8g0336651 29.079 478 283 16 9 449 778 1236 4.52e-43 162
Msa1156490 MtrunA17_Chr8g0336651 34.016 244 140 4 206 449 545 767 1.22e-35 140
Msa1156490 MtrunA17_Chr5g0442561 26.176 489 298 15 9 454 2 470 1.80e-44 162
Msa1156490 MtrunA17_Chr6g0454121 27.158 475 296 17 12 449 10 471 3.35e-44 161
Msa1156490 MtrunA17_Chr6g0454181 27.423 485 293 15 7 449 5 472 3.47e-44 161
Msa1156490 MtrunA17_Chr8g0335141 29.132 484 274 18 15 456 12 468 4.70e-44 160
Msa1156490 MtrunA17_Chr8g0336691 28.721 477 284 15 9 449 10 466 8.71e-44 165
Msa1156490 MtrunA17_Chr8g0336691 27.789 475 283 13 9 445 916 1368 1.01e-40 156
Msa1156490 MtrunA17_Chr8g0336691 28.326 466 272 16 9 449 477 905 8.61e-39 150
Msa1156490 MtrunA17_Chr3g0112771 27.536 483 305 14 1 463 1 458 9.92e-44 159
Msa1156490 MtrunA17_Chr8g0355221 26.378 508 293 17 11 463 14 495 1.34e-43 160
Msa1156490 MtrunA17_Chr4g0066151 26.411 496 302 18 1 456 7 479 1.65e-43 159
Msa1156490 MtrunA17_Chr7g0265051 27.642 492 299 16 11 458 8 486 1.87e-43 159
Msa1156490 MtrunA17_Chr7g0232341 28.131 487 290 16 8 456 2 466 1.99e-43 159
Msa1156490 MtrunA17_Chr3g0118751 26.316 475 288 13 12 458 6 446 2.69e-43 158
Msa1156490 MtrunA17_Chr7g0232331 28.163 490 292 15 8 459 2 469 3.02e-43 158
Msa1156490 MtrunA17_Chr6g0454151 28.000 475 291 16 12 449 10 470 3.37e-43 159
Msa1156490 MtrunA17_Chr7g0265101 27.879 495 296 15 11 458 8 488 3.95e-43 159
Msa1156490 MtrunA17_Chr6g0454201 26.115 471 307 15 12 449 11 473 4.42e-43 158
Msa1156490 MtrunA17_Chr6g0459311 27.935 494 281 18 1 449 1 464 5.53e-43 158
Msa1156490 MtrunA17_Chr1g0207881 29.565 460 242 15 11 463 7 391 6.75e-43 155
Msa1156490 MtrunA17_Chr7g0275511 28.542 487 278 17 2 445 5 464 7.17e-43 157
Msa1156490 MtrunA17_Chr6g0452771 27.178 482 300 16 6 449 4 472 1.02e-42 157
Msa1156490 MtrunA17_Chr5g0448551 28.233 464 286 17 16 458 11 448 1.55e-42 156
Msa1156490 MtrunA17_Chr1g0153451 27.835 485 283 15 9 453 3 460 2.07e-42 156
Msa1156490 MtrunA17_Chr3g0118721 31.399 293 182 7 177 458 7 291 2.33e-42 152
Msa1156490 MtrunA17_Chr5g0442541 27.403 489 285 16 9 454 2 463 2.39e-42 156
Msa1156490 MtrunA17_Chr5g0432731 34.470 264 162 6 200 459 43 299 2.55e-42 152
Msa1156490 MtrunA17_Chr4g0011051 27.530 494 302 18 11 459 8 490 2.98e-42 156
Msa1156490 MtrunA17_Chr4g0066281 26.216 473 295 15 16 456 16 466 3.28e-42 155
Msa1156490 MtrunA17_Chr8g0334831 28.150 508 277 18 1 453 1 475 3.69e-42 155
Msa1156490 MtrunA17_Chr3g0106251 36.226 265 155 7 203 463 46 300 6.46e-42 151
Msa1156490 MtrunA17_Chr6g0454291 25.364 481 310 15 6 449 1 469 8.77e-42 154
Msa1156490 MtrunA17_Chr4g0072761 25.855 468 304 15 11 462 14 454 1.02e-41 154
Msa1156490 MtrunA17_Chr8g0347281 26.598 485 302 14 2 453 6 469 1.20e-41 154
Msa1156490 MtrunA17_Chr3g0112761 28.205 468 289 15 8 453 4 446 1.24e-41 154
Msa1156490 MtrunA17_Chr4g0044521 28.257 499 279 22 8 462 5 468 1.47e-41 154
Msa1156490 MtrunA17_Chr7g0265041 28.803 493 292 21 12 458 11 490 1.53e-41 154
Msa1156490 MtrunA17_Chr6g0454251 26.933 401 249 10 6 369 1 394 3.74e-41 151
Msa1156490 MtrunA17_Chr8g0335161 27.406 478 289 15 9 449 3 459 4.54e-41 152
Msa1156490 MtrunA17_Chr1g0179901 26.132 486 320 11 10 459 14 496 4.75e-41 153
Msa1156490 MtrunA17_Chr6g0463851 26.273 491 289 18 16 456 15 482 6.45e-41 152
Msa1156490 MtrunA17_Chr6g0463861 25.859 495 283 19 16 459 15 476 6.66e-41 152
Msa1156490 MtrunA17_Chr8g0339631 28.084 381 230 9 112 463 110 475 1.72e-40 151
Msa1156490 MtrunA17_Chr5g0416741 24.800 500 314 17 1 456 2 483 1.88e-40 151
Msa1156490 MtrunA17_Chr6g0486251 28.049 492 276 21 1 449 1 457 2.44e-40 150
Msa1156490 MtrunA17_Chr6g0486201 28.049 492 276 21 1 449 1 457 2.44e-40 150
Msa1156490 MtrunA17_Chr7g0243851 26.531 490 267 16 7 456 6 442 2.96e-40 150
Msa1156490 MtrunA17_Chr6g0454131 26.596 470 305 16 12 449 10 471 3.00e-40 150
Msa1156490 MtrunA17_Chr5g0442521 24.494 494 303 15 9 454 2 473 3.15e-40 150
Msa1156490 MtrunA17_Chr5g0442581 24.950 501 293 16 9 454 2 474 3.50e-40 151
Msa1156490 MtrunA17_Chr5g0448521 26.708 483 282 17 9 446 2 457 4.23e-40 150
Msa1156490 MtrunA17_Chr4g0044501 27.140 479 304 17 11 456 9 475 4.53e-40 150
Msa1156490 MtrunA17_Chr5g0442491 25.000 476 278 15 9 425 2 457 9.55e-40 149
Msa1156490 MtrunA17_Chr6g0462571 29.274 468 272 18 15 445 5 450 1.03e-39 149
Msa1156490 MtrunA17_Chr1g0165701 25.703 498 290 16 11 456 14 483 1.11e-39 149
Msa1156490 MtrunA17_Chr2g0294931 24.686 478 312 14 16 456 15 481 1.33e-39 149
Msa1156490 MtrunA17_Chr7g0232311 29.944 354 208 12 125 453 122 460 1.78e-39 148
Msa1156490 MtrunA17_Chr4g0014061 26.296 521 271 16 8 462 5 478 2.13e-39 148
Msa1156490 MtrunA17_Chr6g0454351 25.786 477 294 17 7 449 7 457 2.27e-39 148
Msa1156490 MtrunA17_Chr8g0374941 25.600 500 308 17 1 456 938 1417 2.33e-39 152
Msa1156490 MtrunA17_Chr8g0374941 25.319 470 283 15 15 438 479 926 2.72e-36 142
Msa1156490 MtrunA17_Chr8g0374941 25.586 469 285 17 15 439 14 462 3.28e-36 142
Msa1156490 MtrunA17_Chr6g0449931 28.074 488 276 18 1 445 1 456 2.45e-39 148
Msa1156490 MtrunA17_Chr4g0066131 25.358 489 300 17 9 456 10 474 2.48e-39 148
Msa1156490 MtrunA17_Chr8g0350881 25.049 511 297 17 1 456 1 480 5.68e-39 147
Msa1156490 MtrunA17_Chr5g0428081 25.257 487 296 15 16 456 15 479 6.12e-39 147
Msa1156490 MtrunA17_Chr3g0079731 28.947 494 277 20 14 455 8 479 7.20e-39 147
Msa1156490 MtrunA17_Chr4g0066171 24.291 494 311 15 3 459 12 479 9.10e-39 146
Msa1156490 MtrunA17_Chr8g0339451 27.136 398 231 11 95 452 81 459 1.22e-38 145
Msa1156490 MtrunA17_Chr7g0265151 26.531 490 312 14 11 461 8 488 1.22e-38 146
Msa1156490 MtrunA17_Chr1g0173121 28.131 487 274 21 7 453 9 459 1.23e-38 145
Msa1156490 MtrunA17_Chr5g0420801 28.395 486 295 18 6 461 1 463 1.75e-38 145
Msa1156490 MtrunA17_Chr8g0334861 28.831 385 224 12 100 453 95 460 2.34e-38 145
Msa1156490 MtrunA17_Chr5g0431431 29.843 382 195 16 12 387 10 324 2.57e-38 142
Msa1156490 MtrunA17_Chr7g0243611 34.364 291 150 10 121 392 3 271 4.41e-38 140
Msa1156490 MtrunA17_Chr8g0374931 24.740 481 308 14 16 456 15 481 5.72e-38 144
Msa1156490 MtrunA17_Chr5g0410941 25.364 481 301 15 16 456 27 489 1.40e-37 143
Msa1156490 MtrunA17_Chr5g0429711 27.872 470 281 15 8 445 7 450 1.86e-37 142
Msa1156490 MtrunA17_Chr8g0339461 28.919 370 222 10 112 452 110 467 3.04e-37 142
Msa1156490 MtrunA17_Chr8g0347271 26.122 490 298 14 2 453 7 470 5.51e-37 141
Msa1156490 MtrunA17_Chr6g0462541 40.426 188 102 4 267 445 266 452 6.17e-37 141
Msa1156490 MtrunA17_Chr7g0265141 25.662 491 309 14 8 454 5 483 7.52e-37 141
Msa1156490 MtrunA17_Chr5g0429681 27.403 489 280 16 9 454 41 497 7.96e-37 141
Msa1156490 MtrunA17_Chr6g0462551 31.313 297 168 9 168 445 174 453 1.06e-36 140
Msa1156490 MtrunA17_Chr2g0307961 28.322 459 298 13 12 449 13 461 1.53e-36 140
Msa1156490 MtrunA17_Chr7g0218311 24.274 482 306 13 16 456 20 483 1.69e-36 140
Msa1156490 MtrunA17_Chr5g0419761 25.591 508 304 17 8 462 5 491 1.91e-36 140
Msa1156490 MtrunA17_Chr7g0243711 31.667 240 145 5 235 456 78 316 3.11e-36 136
Msa1156490 MtrunA17_Chr1g0159551 26.261 476 274 19 17 453 19 456 4.22e-36 139
Msa1156490 MtrunA17_Chr6g0462531 28.755 466 280 16 14 445 6 453 4.29e-36 139
Msa1156490 MtrunA17_Chr7g0243811 29.975 407 209 17 25 390 2 373 5.21e-36 137
Msa1156490 MtrunA17_Chr8g0339601 30.449 312 180 8 166 452 27 326 6.77e-36 135
Msa1156490 MtrunA17_Chr8g0370941 26.326 509 275 19 9 449 5 481 8.05e-36 139
Msa1156490 MtrunA17_Chr8g0336731 29.494 356 210 9 124 453 147 487 1.65e-35 137
Msa1156490 MtrunA17_Chr5g0416821 23.471 507 301 20 1 456 3 473 5.71e-35 136
Msa1156490 MtrunA17_Chr7g0241801 25.107 466 298 13 9 462 6 432 5.75e-35 135
Msa1156490 MtrunA17_Chr8g0369341 27.495 491 303 17 6 461 1 473 1.48e-34 134
Msa1156490 MtrunA17_Chr1g0153461 34.762 210 118 4 263 454 2 210 1.51e-34 128
Msa1156490 MtrunA17_Chr8g0382021 25.847 472 290 18 17 453 39 485 2.17e-34 134
Msa1156490 MtrunA17_Chr6g0454271 28.214 280 187 8 177 449 7 279 9.31e-34 128
Msa1156490 MtrunA17_Chr8g0339441 34.928 209 114 4 265 452 218 425 1.07e-33 131
Msa1156490 MtrunA17_Chr6g0462521 40.415 193 105 4 262 445 248 439 1.75e-33 131
Msa1156490 MtrunA17_Chr8g0334851 27.835 485 287 16 1 447 1 460 2.31e-33 131
Msa1156490 MtrunA17_Chr2g0329111 27.328 494 284 18 14 455 8 478 7.30e-33 130
Msa1156490 MtrunA17_Chr7g0241781 26.873 387 234 10 9 381 6 357 1.02e-32 129
Msa1156490 MtrunA17_Chr2g0294941 27.100 369 209 11 114 442 17 365 8.62e-32 125
Msa1156490 MtrunA17_Chr2g0294921 23.000 500 293 18 16 456 164 630 1.30e-31 128
Msa1156490 MtrunA17_Chr5g0442511 24.341 493 292 17 9 460 46 498 2.14e-31 126
Msa1156490 MtrunA17_Chr2g0302961 23.667 469 312 13 19 456 12 465 3.99e-31 125
Msa1156490 MtrunA17_Chr6g0454221 33.158 190 117 5 265 449 39 223 9.90e-31 120
Msa1156490 MtrunA17_Chr7g0232351 28.070 399 228 14 8 369 2 378 1.28e-30 122
Msa1156490 MtrunA17_Chr7g0265111 25.703 498 300 18 11 457 38 516 2.70e-30 123
Msa1156490 MtrunA17_Chr2g0302991 25.876 371 247 8 104 456 102 462 7.30e-30 121
Msa1156490 MtrunA17_Chr8g0367221 27.876 452 286 14 9 434 1285 1722 1.13e-29 123
Msa1156490 MtrunA17_Chr8g0367221 28.224 411 237 13 9 384 9 396 2.42e-27 116
Msa1156490 MtrunA17_Chr8g0367221 32.338 201 117 6 266 457 1057 1247 8.56e-22 99.4
Msa1156490 MtrunA17_Chr5g0403641 30.712 267 156 8 207 449 234 495 1.29e-29 121
Msa1156490 MtrunA17_Chr7g0243911 34.010 197 113 4 260 439 17 213 1.59e-29 115
Msa1156490 MtrunA17_Chr2g0278721 26.025 488 300 21 3 458 6 464 4.56e-29 121
Msa1156490 MtrunA17_Chr2g0278721 24.950 501 296 23 1 456 508 973 4.60e-23 102
Msa1156490 MtrunA17_Chr2g0278741 25.996 477 298 18 7 456 92 540 6.70e-29 119
Msa1156490 MtrunA17_Chr8g0355011 25.000 356 202 11 112 449 46 354 1.56e-28 115
Msa1156490 MtrunA17_Chr5g0409591 33.645 214 116 5 235 422 240 453 1.87e-28 117
Msa1156490 MtrunA17_Chr4g0042891 32.700 263 142 8 179 415 175 428 2.72e-28 117
Msa1156490 MtrunA17_Chr8g0336251 25.462 487 302 17 6 458 1 460 9.69e-28 115
Msa1156490 MtrunA17_Chr3g0079711 35.106 188 96 7 291 455 3 187 1.22e-27 108
Msa1156490 MtrunA17_Chr8g0336321 25.462 487 302 17 6 458 1 460 1.29e-27 115
Msa1156490 MtrunA17_Chr8g0361411 26.850 473 301 15 7 456 3 453 2.59e-27 114
Msa1156490 MtrunA17_Chr6g0466841 25.558 493 305 22 2 463 8 469 4.55e-27 113
Msa1156490 MtrunA17_Chr4g0042931 32.967 273 151 8 165 415 164 426 6.28e-27 112
Msa1156490 MtrunA17_Chr6g0466831 25.963 493 303 23 2 463 8 469 7.53e-27 112
Msa1156490 MtrunA17_Chr7g0249971 60.674 89 32 3 1 89 1 86 2.71e-26 103
Msa1156490 MtrunA17_Chr7g0249971 56.863 51 22 0 171 221 83 133 5.18e-11 60.5
Msa1156490 MtrunA17_Chr6g0454371 31.548 168 105 5 287 449 1 163 1.02e-25 103
Msa1156490 MtrunA17_Chr4g0069611 25.490 408 257 14 2 384 5 390 1.57e-25 108
Msa1156490 MtrunA17_Chr6g0454171 26.269 335 183 13 159 457 4 310 1.42e-24 103
Msa1156490 MtrunA17_Chr6g0482061 26.096 479 303 17 12 451 11 477 1.66e-24 105
Msa1156490 MtrunA17_Chr7g0250011 79.630 54 11 0 371 424 1 54 7.02e-24 94.4
Msa1156490 MtrunA17_Chr7g0231631 23.404 282 171 8 197 456 1 259 9.65e-24 100
Msa1156490 MtrunA17_Chr1g0196851 24.401 459 279 14 11 432 48 475 1.10e-23 103
Msa1156490 MtrunA17_Chr4g0029151 24.396 455 297 13 3 432 11 443 1.28e-23 103
Msa1156490 MtrunA17_Chr4g0029131 24.947 473 276 18 1 432 1 435 1.05e-22 101
Msa1156490 MtrunA17_Chr8g0336261 36.567 134 76 4 287 415 1 130 1.08e-22 93.6
Msa1156490 MtrunA17_Chr6g0464091 26.000 500 299 24 3 463 9 476 2.36e-22 99.4
Msa1156490 MtrunA17_Chr2g0302851 26.119 402 252 16 7 384 11 391 5.57e-22 98.2
Msa1156490 MtrunA17_Chr8g0357361 32.673 202 115 8 209 399 64 255 1.29e-21 94.4
Msa1156490 MtrunA17_Chr8g0337381 35.484 124 75 2 330 452 2 121 2.26e-21 89.7
Msa1156490 MtrunA17_Chr4g0039881 24.299 428 284 16 22 428 2 410 1.05e-20 94.4
Msa1156490 MtrunA17_Chr4g0066141 30.769 156 95 3 314 456 196 351 1.55e-20 92.8
Msa1156490 MtrunA17_Chr5g0427571 39.062 128 71 3 266 386 104 231 2.12e-20 91.7
Msa1156490 MtrunA17_Chr3g0092031 35.119 168 100 6 267 428 6 170 4.27e-20 88.2
Msa1156490 MtrunA17_Chr6g0454231 24.904 261 151 8 203 459 2 221 3.60e-19 89.7
Msa1156490 MtrunA17_Chr2g0319801 25.702 463 266 21 7 427 3 429 9.88e-18 85.5
Msa1156490 MtrunA17_Chr2g0283041 23.207 474 314 19 12 458 7 457 2.07e-17 84.3
Msa1156490 MtrunA17_Chr4g0040691 27.803 223 140 6 203 416 207 417 1.06e-16 82.4
Msa1156490 MtrunA17_Chr4g0040711 28.458 253 156 8 185 427 192 429 2.12e-16 81.3
Msa1156490 MtrunA17_Chr2g0319731 25.164 457 290 17 7 434 20 453 6.03e-16 80.1
Msa1156490 MtrunA17_Chr5g0442501 22.360 322 211 10 9 311 2 303 4.25e-14 73.2
Msa1156490 MtrunA17_Chr6g0453981 29.655 145 100 2 168 311 61 204 4.47e-14 71.6
Msa1156490 MtrunA17_Chr7g0243731 42.254 71 40 1 324 393 2 72 3.93e-13 64.7
Msa1156490 MtrunA17_Chr2g0319791 31.214 173 109 5 265 427 257 429 4.16e-13 71.2
Msa1156490 MtrunA17_Chr2g0319761 23.778 450 291 17 7 427 3 429 1.01e-12 70.1
Msa1156490 MtrunA17_Chr8g0334841 35.088 114 66 1 203 316 34 139 7.29e-12 63.9
Msa1156490 MtrunA17_Chr5g0426411 32.374 139 86 3 12 142 12 150 1.76e-11 62.8
Msa1156490 MtrunA17_Chr8g0336271 24.151 265 169 10 7 246 5 262 6.17e-11 63.2
Msa1156490 MtrunA17_Chr7g0243721 34.146 123 72 2 200 317 24 142 9.81e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156490 AT1G05675.1 42.444 450 247 8 12 454 6 450 6.43e-117 350
Msa1156490 AT1G05680.1 41.556 450 251 8 12 454 6 450 5.73e-116 348
Msa1156490 AT2G43820.1 40.523 459 246 12 9 456 4 446 5.21e-113 340
Msa1156490 AT2G31750.1 41.685 463 240 12 12 458 8 456 5.22e-113 340
Msa1156490 AT2G31750.2 41.595 464 241 12 11 458 7 456 3.29e-112 340
Msa1156490 AT2G43840.2 39.514 453 253 10 12 456 7 446 7.70e-112 337
Msa1156490 AT2G31790.1 40.305 459 258 9 8 456 4 456 8.86e-112 337
Msa1156490 AT2G43840.1 39.294 453 254 10 12 456 7 446 1.19e-110 334
Msa1156490 AT1G24100.1 40.129 466 240 15 12 456 11 458 3.85e-100 308
Msa1156490 AT4G15480.1 35.021 474 275 11 7 456 14 478 3.08e-85 270
Msa1156490 AT1G05560.1 34.755 469 260 11 12 456 5 451 2.96e-79 254
Msa1156490 AT1G05560.2 34.755 469 260 11 12 456 55 501 8.56e-79 254
Msa1156490 AT1G05530.1 35.560 464 268 12 12 457 5 455 4.98e-78 250
Msa1156490 AT4G15490.1 33.888 481 282 13 8 463 4 473 3.21e-77 249
Msa1156490 AT3G21560.1 31.478 467 292 8 12 456 12 472 4.19e-72 236
Msa1156490 AT4G14090.1 33.043 460 282 12 7 454 8 453 2.15e-71 233
Msa1156490 AT4G15550.1 32.790 491 268 14 3 454 4 471 9.69e-71 232
Msa1156490 AT4G15500.1 32.272 471 286 13 12 461 9 467 8.90e-70 229
Msa1156490 AT2G23260.1 32.826 460 284 14 9 456 7 453 9.14e-67 221
Msa1156490 AT1G22400.1 29.622 476 291 13 7 448 8 473 4.46e-64 215
Msa1156490 AT1G78270.1 31.967 488 289 16 7 461 8 485 7.15e-64 214
Msa1156490 AT1G22360.1 30.898 479 288 14 12 457 10 478 2.56e-62 210
Msa1156490 AT1G22380.1 29.363 487 285 14 12 457 13 481 5.52e-62 209
Msa1156490 AT2G23250.1 31.626 449 274 14 21 456 7 435 7.45e-61 205
Msa1156490 AT2G30140.2 30.932 472 294 15 3 463 4 454 5.00e-60 203
Msa1156490 AT2G30140.1 30.867 473 294 16 3 463 4 455 9.22e-60 202
Msa1156490 AT1G22360.2 30.480 479 278 14 12 457 10 466 8.92e-59 200
Msa1156490 AT2G28080.1 29.550 467 290 13 16 458 22 473 1.61e-58 200
Msa1156490 AT1G22340.1 27.959 490 312 14 1 457 1 482 3.10e-58 199
Msa1156490 AT2G36970.1 29.218 486 286 14 8 456 6 470 4.53e-57 196
Msa1156490 AT2G30150.2 29.310 464 291 14 12 459 13 455 2.46e-55 191
Msa1156490 AT3G02100.1 29.310 464 288 14 12 454 13 457 2.70e-54 188
Msa1156490 AT2G30150.1 29.630 459 288 14 16 459 1 439 2.98e-54 187
Msa1156490 AT1G22370.2 28.660 485 296 14 7 457 8 476 1.04e-51 182
Msa1156490 AT2G36780.1 29.006 493 296 16 10 460 12 492 2.68e-47 170
Msa1156490 AT2G36750.1 28.803 493 292 17 11 459 9 486 3.44e-47 170
Msa1156490 AT5G59580.1 29.935 461 285 18 12 456 9 447 4.10e-47 169
Msa1156490 AT2G36770.1 28.571 497 287 19 11 458 13 490 3.02e-46 167
Msa1156490 AT2G15490.3 28.112 498 290 17 6 456 1 477 1.02e-45 166
Msa1156490 AT2G36800.1 27.921 505 311 17 1 463 1 494 1.90e-45 165
Msa1156490 AT2G36760.1 28.455 492 294 17 11 458 13 490 2.36e-45 165
Msa1156490 AT4G01070.1 27.328 494 270 14 8 449 4 460 3.17e-45 164
Msa1156490 AT2G15490.1 27.944 501 290 17 6 456 1 480 3.80e-45 164
Msa1156490 AT5G59590.1 28.964 473 295 18 1 456 1 449 4.98e-45 163
Msa1156490 AT1G10400.1 29.098 488 277 23 9 456 4 462 9.55e-45 163
Msa1156490 AT5G17050.1 25.053 475 324 10 1 459 1 459 1.11e-44 162
Msa1156490 AT5G05870.1 29.247 465 287 15 14 456 10 454 1.19e-43 160
Msa1156490 AT2G16890.2 29.184 490 299 20 5 463 2 474 1.48e-43 160
Msa1156490 AT3G46660.1 27.409 467 284 12 14 454 16 453 3.03e-43 159
Msa1156490 AT2G29730.1 27.331 472 302 16 9 453 2 459 3.45e-43 159
Msa1156490 AT3G55700.1 28.125 480 289 17 9 461 5 455 4.97e-43 158
Msa1156490 AT2G29740.1 26.598 485 304 13 9 456 5 474 5.23e-43 158
Msa1156490 AT5G38040.1 28.419 468 268 18 20 456 18 449 1.09e-42 157
Msa1156490 AT3G46670.1 28.601 479 284 17 1 454 1 446 1.32e-42 157
Msa1156490 AT3G11340.1 27.706 462 292 16 4 449 2 437 2.77e-42 155
Msa1156490 AT2G15480.1 27.200 500 297 20 3 456 2 480 3.00e-42 156
Msa1156490 AT3G46650.1 27.837 467 283 17 1 452 1 428 3.08e-42 155
Msa1156490 AT2G29710.1 26.931 479 311 16 9 461 2 467 3.32e-42 156
Msa1156490 AT2G15480.2 26.758 512 294 22 3 456 2 490 1.04e-41 155
Msa1156490 AT5G14860.1 27.515 487 300 21 8 456 4 475 1.72e-41 154
Msa1156490 AT1G07240.1 25.610 492 306 16 9 457 2 476 5.11e-41 153
Msa1156490 AT3G55710.1 27.848 474 294 17 14 462 10 460 5.66e-41 152
Msa1156490 AT1G07250.1 27.403 489 301 17 8 458 2 474 7.92e-41 152
Msa1156490 AT2G36790.1 27.435 503 295 18 11 463 12 494 1.60e-40 152
Msa1156490 AT5G05880.1 26.360 478 286 16 8 454 4 446 3.57e-40 150
Msa1156490 AT3G46690.1 27.371 464 291 12 14 456 11 449 6.87e-40 149
Msa1156490 AT5G38010.1 27.536 483 293 15 1 456 1 453 1.70e-39 148
Msa1156490 AT5G17040.1 24.229 454 322 11 12 459 5 442 2.05e-39 148
Msa1156490 AT3G22250.1 27.293 447 291 13 8 429 4 441 2.54e-39 148
Msa1156490 AT3G53160.1 27.143 490 307 18 11 460 7 486 2.56e-39 148
Msa1156490 AT3G16520.3 29.834 362 226 10 109 455 110 458 4.86e-39 147
Msa1156490 AT1G01420.1 27.331 472 293 15 12 451 8 461 5.45e-39 147
Msa1156490 AT3G53150.1 26.419 511 314 16 1 458 10 511 5.55e-39 148
Msa1156490 AT4G34131.1 27.545 501 282 21 9 456 7 479 6.03e-39 147
Msa1156490 AT3G21800.1 27.273 484 292 15 16 456 9 475 6.43e-39 147
Msa1156490 AT1G01420.2 27.331 472 293 15 12 451 11 464 7.25e-39 147
Msa1156490 AT4G34135.1 28.706 425 242 19 9 392 8 412 2.78e-38 145
Msa1156490 AT4G34138.1 26.735 490 282 20 6 445 5 467 2.93e-38 145
Msa1156490 AT2G16890.3 29.327 416 251 17 5 393 2 401 3.01e-38 144
Msa1156490 AT3G46680.1 26.514 479 272 19 14 454 11 447 3.53e-38 144
Msa1156490 AT2G29750.1 25.979 485 306 13 9 456 5 473 5.33e-38 144
Msa1156490 AT4G36770.1 29.832 476 255 21 11 439 3 446 1.51e-37 143
Msa1156490 AT5G05900.1 25.800 469 299 14 8 454 4 445 2.51e-37 142
Msa1156490 AT3G21760.1 26.000 500 294 14 11 456 3 480 2.73e-37 142
Msa1156490 AT5G03490.1 25.299 502 284 15 3 459 10 465 4.72e-37 142
Msa1156490 AT3G21790.1 28.676 408 241 13 16 386 8 402 5.30e-37 142
Msa1156490 AT5G26310.1 25.581 473 298 18 12 449 7 460 6.57e-37 141
Msa1156490 AT1G22370.1 31.457 302 186 8 168 457 14 306 8.17e-37 137
Msa1156490 AT1G01390.2 26.752 471 302 11 12 453 25 481 1.79e-36 140
Msa1156490 AT1G01390.1 27.521 476 292 12 12 453 8 464 2.09e-36 140
Msa1156490 AT4G15280.1 25.352 497 298 12 11 458 3 475 2.32e-36 140
Msa1156490 AT3G21750.1 26.844 488 293 15 11 456 3 468 3.31e-36 139
Msa1156490 AT3G16520.2 30.745 322 199 9 109 415 110 422 3.35e-36 139
Msa1156490 AT3G16520.1 30.745 322 199 9 109 415 110 422 3.80e-36 139
Msa1156490 AT4G15280.2 25.352 497 298 12 11 458 35 507 4.88e-36 139
Msa1156490 AT3G46720.1 28.571 462 279 20 14 456 11 440 6.24e-36 138
Msa1156490 AT3G46700.1 27.342 395 253 11 14 393 11 386 2.37e-35 137
Msa1156490 AT1G07260.1 32.700 263 159 5 206 457 217 472 2.97e-35 137
Msa1156490 AT5G17030.1 23.441 465 321 12 1 448 1 447 3.77e-35 136
Msa1156490 AT1G30530.1 23.391 466 321 12 9 459 9 453 7.74e-35 135
Msa1156490 AT5G66690.1 27.101 476 287 19 12 449 7 460 8.11e-35 135
Msa1156490 AT1G51210.1 27.103 428 273 16 12 423 20 424 1.39e-34 134
Msa1156490 AT5G05860.1 26.940 464 299 15 11 457 8 448 4.68e-34 133
Msa1156490 AT1G73880.1 25.620 484 298 20 12 460 14 470 5.41e-34 133
Msa1156490 AT3G21780.1 25.562 489 297 13 11 454 3 469 5.80e-33 130
Msa1156490 AT5G17040.2 26.190 294 203 5 168 459 59 340 8.33e-33 127
Msa1156490 AT5G05890.1 25.519 482 296 19 8 456 4 455 1.14e-32 129
Msa1156490 AT4G15260.1 28.649 370 208 11 125 458 7 356 1.60e-32 127
Msa1156490 AT5G12890.1 25.152 493 302 15 9 454 7 479 2.30e-32 129
Msa1156490 AT3G50740.1 25.257 487 288 16 12 449 7 466 9.69e-32 127
Msa1156490 AT5G49690.1 27.232 448 279 18 11 434 9 433 1.11e-30 124
Msa1156490 AT2G22590.1 25.662 491 292 21 11 463 14 469 3.18e-30 122
Msa1156490 AT2G18570.1 32.258 217 130 5 260 459 253 469 3.50e-30 122
Msa1156490 AT2G18560.1 33.028 218 129 5 260 460 163 380 3.56e-29 118
Msa1156490 AT2G26480.1 25.053 471 300 14 9 456 5 445 6.46e-29 119
Msa1156490 AT5G65550.1 25.828 453 273 18 11 427 8 433 7.03e-29 119
Msa1156490 AT1G06000.1 26.458 480 276 15 5 456 3 433 9.55e-28 115
Msa1156490 AT5G37950.1 26.452 310 192 7 82 373 56 347 2.87e-24 103
Msa1156490 AT4G27570.1 25.652 460 268 18 12 436 7 427 4.60e-24 104
Msa1156490 AT4G27560.1 26.269 453 266 17 12 432 7 423 6.32e-24 104
Msa1156490 AT5G53990.1 24.263 441 291 15 9 432 3 417 6.47e-23 101
Msa1156490 AT5G54010.1 23.894 452 289 16 12 437 6 428 1.14e-22 100
Msa1156490 AT5G37950.2 26.316 304 194 7 82 373 56 341 1.97e-22 98.6
Msa1156490 AT1G64910.1 23.077 468 307 13 9 456 3 437 2.46e-22 99.8
Msa1156490 AT5G54060.1 24.167 480 312 14 8 455 9 468 9.31e-22 98.2
Msa1156490 AT3G29630.1 24.541 436 285 15 12 430 6 414 6.79e-20 92.4
Msa1156490 AT4G09500.2 22.757 457 276 14 12 434 6 419 4.83e-18 86.7
Msa1156490 AT4G34135.2 26.590 346 198 17 9 318 8 333 9.25e-18 84.7
Msa1156490 AT1G50580.1 23.963 434 286 14 12 427 6 413 1.06e-17 85.5
Msa1156490 AT2G22930.1 22.296 453 298 13 10 439 4 425 1.43e-17 85.1
Msa1156490 AT2G23210.1 26.263 297 196 11 5 293 3 284 1.81e-17 83.2
Msa1156490 AT1G64920.1 22.658 459 295 15 9 439 3 429 2.70e-17 84.3
Msa1156490 AT3G29630.2 23.218 435 266 13 12 430 6 388 4.61e-17 83.6
Msa1156490 AT4G09500.1 29.545 176 116 3 267 434 219 394 1.35e-15 79.0
Msa1156490 AT4G01070.2 24.768 323 205 9 8 312 4 306 3.68e-15 77.0

Find 92 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAATTATTTGGCAATTT+AGG 0.137525 7_4:+44752508 None:intergenic
AATTGTATTTGAATAAATTT+TGG 0.160289 7_4:-44752423 Msa1156490:CDS
TCAATTGTAATGGAATTATT+TGG 0.181748 7_4:+44752499 None:intergenic
AGATCCAACCTTTCTTGATT+TGG 0.205723 7_4:-44752107 Msa1156490:CDS
TTATGTTTCATTTGGGAGTA+TGG 0.241418 7_4:-44751290 Msa1156490:CDS
GATCCAACCTTTCTTGATTT+GGG 0.258512 7_4:-44752106 Msa1156490:CDS
TTAGATGTTGCAAAGAAATT+TGG 0.259731 7_4:-44752298 Msa1156490:CDS
TGAAGACTTGGTCCAACTTT+AGG 0.282659 7_4:-44751444 Msa1156490:CDS
CAAAGTTTCTTGTAGATGTT+TGG 0.283012 7_4:-44750979 Msa1156490:CDS
ATGGACACTCTTGGTGGATA+TGG 0.283697 7_4:+44752657 None:intergenic
TCTGTTGTTTATGTTTCATT+TGG 0.285265 7_4:-44751298 Msa1156490:CDS
TATATACTATCATGTTCATT+TGG 0.297196 7_4:-44752230 Msa1156490:CDS
CTTGTAGATGTTTGGAAAGT+AGG 0.306863 7_4:-44750971 Msa1156490:CDS
GTTAAAGATGATGAAGATTA+TGG 0.348415 7_4:-44751379 Msa1156490:CDS
CTGTTGTTTATGTTTCATTT+GGG 0.359788 7_4:-44751297 Msa1156490:CDS
CATGAGCTAGAACCTCTAAC+TGG 0.362003 7_4:+44751113 None:intergenic
CACAAAGCTGATTGGATCCT+TGG 0.362027 7_4:-44752061 Msa1156490:CDS
CTAATATTCACAAAGCTGAT+TGG 0.364818 7_4:-44752069 Msa1156490:CDS
TAAAGTGGCATTGCAACAAT+TGG 0.372127 7_4:+44751022 None:intergenic
GGCATGGTGCTCCCAGTTAG+AGG 0.373163 7_4:-44751125 Msa1156490:CDS
ATTAATTTGTGGTTGAAACT+TGG 0.382493 7_4:+44750750 None:intergenic
CACCAAGAGTGTCCATTGTT+TGG 0.383032 7_4:-44752650 Msa1156490:CDS
ACATTGGAAGCTTTGAGTAT+AGG 0.385135 7_4:-44751049 Msa1156490:CDS
TTTATGATTCATTCATGCCT+TGG 0.386321 7_4:-44752324 Msa1156490:CDS
TGGCAATTCCTTCTTTGAGC+TGG 0.389978 7_4:-44752041 Msa1156490:CDS
GTTCTAGCTCATGAAGCAAT+AGG 0.390537 7_4:-44751103 Msa1156490:CDS
GGATTGTATATGTGAAATAA+TGG 0.405052 7_4:-44750897 Msa1156490:CDS
ATTGATCACGAATTAATTTG+TGG 0.406709 7_4:+44750739 None:intergenic
ATATACTATCATGTTCATTT+GGG 0.411474 7_4:-44752229 Msa1156490:CDS
ACATAAACAACAGACCGTTT+TGG 0.414991 7_4:+44751307 None:intergenic
GCAAAGAAATTTGGAATTGT+TGG 0.425997 7_4:-44752289 Msa1156490:CDS
TTTGTCAAAACCATCAGAAA+TGG 0.439695 7_4:+44752474 None:intergenic
ATTTGTTTCTCATCAACTAA+AGG 0.445434 7_4:+44750941 None:intergenic
CTCTTTCTCCAGCTCAAAGA+AGG 0.453168 7_4:+44752033 None:intergenic
CTTCTTTGAGCTGGAGAAAG+AGG 0.460334 7_4:-44752032 Msa1156490:intron
ATGCTTTGTAGGTGGCTGAT+TGG 0.461540 7_4:-44751471 Msa1156490:intron
AGAAATGGTCTCAATTGTAA+TGG 0.467504 7_4:+44752489 None:intergenic
GCAAGAGCGGTTGGTAAAGA+TGG 0.472152 7_4:-44750815 Msa1156490:CDS
TCATATGTAAAGTAGAAAGA+AGG 0.475384 7_4:+44752133 None:intergenic
AGTGAGAAAAGATACATTGA+AGG 0.476733 7_4:-44750918 Msa1156490:CDS
ACTCAATGAGGAACAAATAG+AGG 0.483111 7_4:-44751263 Msa1156490:CDS
TTTGAAAAGAAATCAGAGAA+TGG 0.483547 7_4:-44751157 Msa1156490:CDS
GCACATTGTTTGAAAGATTG+TGG 0.490834 7_4:-44751235 Msa1156490:CDS
TTCTAGCTCATGAAGCAATA+GGG 0.491607 7_4:-44751102 Msa1156490:CDS
ATAATGGATATGAGTGAGAA+AGG 0.493502 7_4:-44750881 Msa1156490:CDS
AACCTTTCTTGATTTGGGAA+TGG 0.494501 7_4:-44752101 Msa1156490:CDS
GTGTGACCATGTGCTGGAAA+TGG 0.499562 7_4:+44752622 None:intergenic
GGCTAAATAATAAGCCAAAA+CGG 0.501669 7_4:-44751321 Msa1156490:CDS
CGCCATTCCCAAATCAAGAA+AGG 0.504292 7_4:+44752099 None:intergenic
CACTTCCTCAACTACAACCT+AGG 0.504525 7_4:-44752162 Msa1156490:CDS
GAAACTTTGCATCAATGCCT+TGG 0.505772 7_4:+44750993 None:intergenic
AGCTTGGAGAATTCTAGCAT+TGG 0.506357 7_4:+44752595 None:intergenic
GGTTGTAGTTGAGGAAGTGC+AGG 0.512659 7_4:+44752166 None:intergenic
GTAATCTCTTGCTCAACAAA+GGG 0.518356 7_4:+44752193 None:intergenic
GTGTTGCCATTTCCAGCACA+TGG 0.520176 7_4:-44752628 Msa1156490:CDS
AGGCCCTACGGTCCTAAAGT+TGG 0.523956 7_4:+44751432 None:intergenic
CACCAAACAATGGACACTCT+TGG 0.533421 7_4:+44752648 None:intergenic
ATGTTGTTGTTGTAAAAGCT+TGG 0.534474 7_4:+44752579 None:intergenic
CTGATTGGACAATGAAGACT+TGG 0.538261 7_4:-44751456 Msa1156490:CDS
ACTTTGGCTGCAAGAGCGGT+TGG 0.544404 7_4:-44750824 Msa1156490:CDS
ATTCCCAAATCAAGAAAGGT+TGG 0.546522 7_4:+44752103 None:intergenic
AGTAATCTCTTGCTCAACAA+AGG 0.547998 7_4:+44752192 None:intergenic
AAAGTGGCATTGCAACAATT+GGG 0.549651 7_4:+44751023 None:intergenic
TGGTCCAACTTTAGGACCGT+AGG 0.551613 7_4:-44751436 Msa1156490:CDS
ATAAGATCAGCAAGAGATTG+TGG 0.551665 7_4:+44752391 None:intergenic
GGATTAGTGTGACCATGTGC+TGG 0.558725 7_4:+44752616 None:intergenic
ATCTCTTGCTCAACAAAGGG+AGG 0.564142 7_4:+44752196 None:intergenic
TAGAAAGAAGGCATGTCCCT+AGG 0.564966 7_4:+44752145 None:intergenic
AAAGCGACGAAAGTATAGAA+TGG 0.567278 7_4:-44751342 Msa1156490:CDS
CAAACAATGGACACTCTTGG+TGG 0.573270 7_4:+44752651 None:intergenic
TGTCATGCAATGGAAGACTT+TGG 0.576697 7_4:-44750840 Msa1156490:CDS
AGGTGGAGTTGCTGAAGCAA+AGG 0.577638 7_4:-44752452 Msa1156490:CDS
ACAATTGAGACCATTTCTGA+TGG 0.581663 7_4:-44752484 Msa1156490:CDS
TGGGAGCTTAGTCTCTTCAG+AGG 0.586731 7_4:+44751186 None:intergenic
GAAGACTTTGGCTGCAAGAG+CGG 0.591185 7_4:-44750828 Msa1156490:CDS
ATCAGAGAATGGCTTAGTTG+TGG 0.592983 7_4:-44751146 Msa1156490:CDS
GGTCCAACTTTAGGACCGTA+GGG 0.599900 7_4:-44751435 Msa1156490:CDS
ATGCCTTGGTCTGAGTAAAG+TGG 0.604432 7_4:+44751007 None:intergenic
ATGTCCCTAGGTTGTAGTTG+AGG 0.604747 7_4:+44752157 None:intergenic
ACTTCCTCAACTACAACCTA+GGG 0.613689 7_4:-44752161 Msa1156490:CDS
ATACGGTAGGCAAGGCCCTA+CGG 0.617547 7_4:+44751420 None:intergenic
ATGAGCTAGAACCTCTAACT+GGG 0.620178 7_4:+44751114 None:intergenic
TTATGAATAATGTCATGCAA+TGG 0.621729 7_4:-44750850 Msa1156490:CDS
CATAAATAAGACAATCAACA+TGG 0.624458 7_4:+44752341 None:intergenic
ATGCCACTTTACTCAGACCA+AGG 0.625688 7_4:-44751010 Msa1156490:CDS
GAAATGGCAACACCAAACAA+TGG 0.627949 7_4:+44752638 None:intergenic
GCTCAAAGAAGGAATTGCCA+AGG 0.642523 7_4:+44752044 None:intergenic
TTGTGGTTGGAATTCCACAT+TGG 0.669756 7_4:-44751065 Msa1156490:CDS
GAGTATGGCATCACTCAATG+AGG 0.672707 7_4:-44751275 Msa1156490:CDS
TATACTCAAAGCTTCCAATG+TGG 0.673363 7_4:+44751051 None:intergenic
AGAATGGCTTAGTTGTGGCA+TGG 0.681734 7_4:-44751141 Msa1156490:CDS
TTTGCAACATCTAAGCACCA+AGG 0.681871 7_4:+44752307 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGTATTTGAATAAATTT+TGG - chr7_4:44750998-44751017 Msa1156490:CDS 10.0%
!!! AATTGTATTTGAATAAATTT+TGG - chr7_4:44750998-44751017 Msa1156490:CDS 10.0%
!!! GAAATTTTAACATAATCAAA+TGG + chr7_4:44751471-44751490 None:intergenic 15.0%
!!! TTTTAGACATATAGTTTATA+AGG + chr7_4:44751636-44751655 None:intergenic 15.0%
!!! GAAATTTTAACATAATCAAA+TGG + chr7_4:44751471-44751490 None:intergenic 15.0%
!!! TTTTAGACATATAGTTTATA+AGG + chr7_4:44751636-44751655 None:intergenic 15.0%
!!! TCAATTGTAATGGAATTATT+TGG + chr7_4:44750925-44750944 None:intergenic 20.0%
!! TATATACTATCATGTTCATT+TGG - chr7_4:44751191-44751210 Msa1156490:CDS 20.0%
!! ATATACTATCATGTTCATTT+GGG - chr7_4:44751192-44751211 Msa1156490:CDS 20.0%
!! TGTACAAATATCATTTCTTA+AGG + chr7_4:44751502-44751521 None:intergenic 20.0%
!! AAAATAAAAGAGAGATAAAG+AGG - chr7_4:44751575-44751594 Msa1156490:intron 20.0%
!! AAATAAAAGAGAGATAAAGA+GGG - chr7_4:44751576-44751595 Msa1156490:intron 20.0%
!! TGTTATAATCTAGTGTTTAT+AGG + chr7_4:44751740-44751759 None:intergenic 20.0%
!!! ATTTCTTTTCAAAGTCTTTT+GGG + chr7_4:44752257-44752276 None:intergenic 20.0%
!!! TCAATTGTAATGGAATTATT+TGG + chr7_4:44750925-44750944 None:intergenic 20.0%
!! TATATACTATCATGTTCATT+TGG - chr7_4:44751191-44751210 Msa1156490:CDS 20.0%
!! ATATACTATCATGTTCATTT+GGG - chr7_4:44751192-44751211 Msa1156490:CDS 20.0%
!! TGTACAAATATCATTTCTTA+AGG + chr7_4:44751502-44751521 None:intergenic 20.0%
!! AAAATAAAAGAGAGATAAAG+AGG - chr7_4:44751575-44751594 Msa1156490:intron 20.0%
!! AAATAAAAGAGAGATAAAGA+GGG - chr7_4:44751576-44751595 Msa1156490:intron 20.0%
!! TGTTATAATCTAGTGTTTAT+AGG + chr7_4:44751740-44751759 None:intergenic 20.0%
!!! ATTTCTTTTCAAAGTCTTTT+GGG + chr7_4:44752257-44752276 None:intergenic 20.0%
!!! TATGTTTTTGTAGTAGGAAA+GGG + chr7_4:44750893-44750912 None:intergenic 25.0%
!!! TTTAGGTATGTTTTTGTAGT+AGG + chr7_4:44750899-44750918 None:intergenic 25.0%
! ATGGAATTATTTGGCAATTT+AGG + chr7_4:44750916-44750935 None:intergenic 25.0%
!!! TTGAATAAATTTTGGCAAGT+TGG - chr7_4:44751006-44751025 Msa1156490:CDS 25.0%
! CATAAATAAGACAATCAACA+TGG + chr7_4:44751083-44751102 None:intergenic 25.0%
! TTAGATGTTGCAAAGAAATT+TGG - chr7_4:44751123-44751142 Msa1156490:CDS 25.0%
! TCATATGTAAAGTAGAAAGA+AGG + chr7_4:44751291-44751310 None:intergenic 25.0%
! AAAGAGGTAAGTAAGAATTT+GGG - chr7_4:44751405-44751424 Msa1156490:CDS 25.0%
! ATAATCAAATGGTTGTCATT+TGG + chr7_4:44751460-44751479 None:intergenic 25.0%
! TCTCAAAAGTTGTCATAAAA+TGG + chr7_4:44751526-44751545 None:intergenic 25.0%
! ATAACAAAAACATGTGTATG+AGG - chr7_4:44751754-44751773 Msa1156490:intron 25.0%
! AATTTCTACAACACTTTAGA+TGG + chr7_4:44751830-44751849 None:intergenic 25.0%
! ATTCAATTGGTAAATGCTTA+AGG + chr7_4:44751882-44751901 None:intergenic 25.0%
! TATCTAAAAATGTATACGGT+AGG + chr7_4:44752017-44752036 None:intergenic 25.0%
! CGCTTATCTAAAAATGTATA+CGG + chr7_4:44752021-44752040 None:intergenic 25.0%
! GTTAAAGATGATGAAGATTA+TGG - chr7_4:44752042-44752061 Msa1156490:CDS 25.0%
!! TCTGTTGTTTATGTTTCATT+TGG - chr7_4:44752123-44752142 Msa1156490:CDS 25.0%
!! CTGTTGTTTATGTTTCATTT+GGG - chr7_4:44752124-44752143 Msa1156490:CDS 25.0%
!!! ATTGTGGAAGTTACTTTTTA+TGG - chr7_4:44752202-44752221 Msa1156490:CDS 25.0%
!!! TTGTGGAAGTTACTTTTTAT+GGG - chr7_4:44752203-44752222 Msa1156490:CDS 25.0%
!! GATTTCTTTTCAAAGTCTTT+TGG + chr7_4:44752258-44752277 None:intergenic 25.0%
! TTTGAAAAGAAATCAGAGAA+TGG - chr7_4:44752264-44752283 Msa1156490:CDS 25.0%
!! ATTTGTTTCTCATCAACTAA+AGG + chr7_4:44752483-44752502 None:intergenic 25.0%
! GGATTGTATATGTGAAATAA+TGG - chr7_4:44752524-44752543 Msa1156490:CDS 25.0%
! TTATGAATAATGTCATGCAA+TGG - chr7_4:44752571-44752590 Msa1156490:CDS 25.0%
!!! TATGTTTTTGTAGTAGGAAA+GGG + chr7_4:44750893-44750912 None:intergenic 25.0%
!!! TTTAGGTATGTTTTTGTAGT+AGG + chr7_4:44750899-44750918 None:intergenic 25.0%
! ATGGAATTATTTGGCAATTT+AGG + chr7_4:44750916-44750935 None:intergenic 25.0%
!!! TTGAATAAATTTTGGCAAGT+TGG - chr7_4:44751006-44751025 Msa1156490:CDS 25.0%
! CATAAATAAGACAATCAACA+TGG + chr7_4:44751083-44751102 None:intergenic 25.0%
! TTAGATGTTGCAAAGAAATT+TGG - chr7_4:44751123-44751142 Msa1156490:CDS 25.0%
! TCATATGTAAAGTAGAAAGA+AGG + chr7_4:44751291-44751310 None:intergenic 25.0%
! AAAGAGGTAAGTAAGAATTT+GGG - chr7_4:44751405-44751424 Msa1156490:CDS 25.0%
! ATAATCAAATGGTTGTCATT+TGG + chr7_4:44751460-44751479 None:intergenic 25.0%
! TCTCAAAAGTTGTCATAAAA+TGG + chr7_4:44751526-44751545 None:intergenic 25.0%
! ATAACAAAAACATGTGTATG+AGG - chr7_4:44751754-44751773 Msa1156490:intron 25.0%
! AATTTCTACAACACTTTAGA+TGG + chr7_4:44751830-44751849 None:intergenic 25.0%
! ATTCAATTGGTAAATGCTTA+AGG + chr7_4:44751882-44751901 None:intergenic 25.0%
! TATCTAAAAATGTATACGGT+AGG + chr7_4:44752017-44752036 None:intergenic 25.0%
! CGCTTATCTAAAAATGTATA+CGG + chr7_4:44752021-44752040 None:intergenic 25.0%
! GTTAAAGATGATGAAGATTA+TGG - chr7_4:44752042-44752061 Msa1156490:CDS 25.0%
!! TCTGTTGTTTATGTTTCATT+TGG - chr7_4:44752123-44752142 Msa1156490:CDS 25.0%
!! CTGTTGTTTATGTTTCATTT+GGG - chr7_4:44752124-44752143 Msa1156490:CDS 25.0%
!!! ATTGTGGAAGTTACTTTTTA+TGG - chr7_4:44752202-44752221 Msa1156490:CDS 25.0%
!!! TTGTGGAAGTTACTTTTTAT+GGG - chr7_4:44752203-44752222 Msa1156490:CDS 25.0%
!! GATTTCTTTTCAAAGTCTTT+TGG + chr7_4:44752258-44752277 None:intergenic 25.0%
! TTTGAAAAGAAATCAGAGAA+TGG - chr7_4:44752264-44752283 Msa1156490:CDS 25.0%
!! ATTTGTTTCTCATCAACTAA+AGG + chr7_4:44752483-44752502 None:intergenic 25.0%
! GGATTGTATATGTGAAATAA+TGG - chr7_4:44752524-44752543 Msa1156490:CDS 25.0%
! TTATGAATAATGTCATGCAA+TGG - chr7_4:44752571-44752590 Msa1156490:CDS 25.0%
! ATGTTGTTGTTGTAAAAGCT+TGG + chr7_4:44750845-44750864 None:intergenic 30.0%
! AAGCTTTTACAACAACAACA+TGG - chr7_4:44750844-44750863 Msa1156490:CDS 30.0%
!! GTATGTTTTTGTAGTAGGAA+AGG + chr7_4:44750894-44750913 None:intergenic 30.0%
AGAAATGGTCTCAATTGTAA+TGG + chr7_4:44750935-44750954 None:intergenic 30.0%
TTTGTCAAAACCATCAGAAA+TGG + chr7_4:44750950-44750969 None:intergenic 30.0%
!!! ATTTCTGATGGTTTTGACAA+AGG - chr7_4:44750949-44750968 Msa1156490:CDS 30.0%
TTTATGATTCATTCATGCCT+TGG - chr7_4:44751097-44751116 Msa1156490:CDS 30.0%
! GCAAAGAAATTTGGAATTGT+TGG - chr7_4:44751132-44751151 Msa1156490:CDS 30.0%
CTAATATTCACAAAGCTGAT+TGG - chr7_4:44751352-44751371 Msa1156490:CDS 30.0%
GAAAGAGGTAAGTAAGAATT+TGG - chr7_4:44751404-44751423 Msa1156490:CDS 30.0%
AATGACTCTAAATGCTTTGT+AGG - chr7_4:44751939-44751958 Msa1156490:intron 30.0%
GGCTAAATAATAAGCCAAAA+CGG - chr7_4:44752100-44752119 Msa1156490:CDS 30.0%
TTATGTTTCATTTGGGAGTA+TGG - chr7_4:44752131-44752150 Msa1156490:CDS 30.0%
CAAAGTTTCTTGTAGATGTT+TGG - chr7_4:44752442-44752461 Msa1156490:CDS 30.0%
AGTGAGAAAAGATACATTGA+AGG - chr7_4:44752503-44752522 Msa1156490:CDS 30.0%
!! ATAATGGATATGAGTGAGAA+AGG - chr7_4:44752540-44752559 Msa1156490:CDS 30.0%
! ATGTTGTTGTTGTAAAAGCT+TGG + chr7_4:44750845-44750864 None:intergenic 30.0%
! AAGCTTTTACAACAACAACA+TGG - chr7_4:44750844-44750863 Msa1156490:CDS 30.0%
!! GTATGTTTTTGTAGTAGGAA+AGG + chr7_4:44750894-44750913 None:intergenic 30.0%
AGAAATGGTCTCAATTGTAA+TGG + chr7_4:44750935-44750954 None:intergenic 30.0%
TTTGTCAAAACCATCAGAAA+TGG + chr7_4:44750950-44750969 None:intergenic 30.0%
!!! ATTTCTGATGGTTTTGACAA+AGG - chr7_4:44750949-44750968 Msa1156490:CDS 30.0%
TTTATGATTCATTCATGCCT+TGG - chr7_4:44751097-44751116 Msa1156490:CDS 30.0%
! GCAAAGAAATTTGGAATTGT+TGG - chr7_4:44751132-44751151 Msa1156490:CDS 30.0%
CTAATATTCACAAAGCTGAT+TGG - chr7_4:44751352-44751371 Msa1156490:CDS 30.0%
GAAAGAGGTAAGTAAGAATT+TGG - chr7_4:44751404-44751423 Msa1156490:CDS 30.0%
AATGACTCTAAATGCTTTGT+AGG - chr7_4:44751939-44751958 Msa1156490:intron 30.0%
GGCTAAATAATAAGCCAAAA+CGG - chr7_4:44752100-44752119 Msa1156490:CDS 30.0%
TTATGTTTCATTTGGGAGTA+TGG - chr7_4:44752131-44752150 Msa1156490:CDS 30.0%
CAAAGTTTCTTGTAGATGTT+TGG - chr7_4:44752442-44752461 Msa1156490:CDS 30.0%
AGTGAGAAAAGATACATTGA+AGG - chr7_4:44752503-44752522 Msa1156490:CDS 30.0%
!! ATAATGGATATGAGTGAGAA+AGG - chr7_4:44752540-44752559 Msa1156490:CDS 30.0%
ACAATTGAGACCATTTCTGA+TGG - chr7_4:44750937-44750956 Msa1156490:CDS 35.0%
ATAAGATCAGCAAGAGATTG+TGG + chr7_4:44751033-44751052 None:intergenic 35.0%
GTAATCTCTTGCTCAACAAA+GGG + chr7_4:44751231-44751250 None:intergenic 35.0%
AGTAATCTCTTGCTCAACAA+AGG + chr7_4:44751232-44751251 None:intergenic 35.0%
AGATCCAACCTTTCTTGATT+TGG - chr7_4:44751314-44751333 Msa1156490:CDS 35.0%
GATCCAACCTTTCTTGATTT+GGG - chr7_4:44751315-44751334 Msa1156490:CDS 35.0%
ATTCCCAAATCAAGAAAGGT+TGG + chr7_4:44751321-44751340 None:intergenic 35.0%
!! AACCTTTCTTGATTTGGGAA+TGG - chr7_4:44751320-44751339 Msa1156490:CDS 35.0%
TAAAAGAGAGATAAAGAGGG+AGG - chr7_4:44751579-44751598 Msa1156490:intron 35.0%
AAAAGAGAGATAAAGAGGGA+GGG - chr7_4:44751580-44751599 Msa1156490:intron 35.0%
GGCTAACAAAAGAAAGAGAT+AGG + chr7_4:44751719-44751738 None:intergenic 35.0%
CATACAAGTGGTGATTCAAT+TGG + chr7_4:44751895-44751914 None:intergenic 35.0%
TTACAAAAGCAGCATACAAG+TGG + chr7_4:44751907-44751926 None:intergenic 35.0%
!!! CTTGTATGCTGCTTTTGTAA+AGG - chr7_4:44751907-44751926 Msa1156490:intron 35.0%
AAAAATGTATACGGTAGGCA+AGG + chr7_4:44752012-44752031 None:intergenic 35.0%
! AAAGCGACGAAAGTATAGAA+TGG - chr7_4:44752079-44752098 Msa1156490:CDS 35.0%
! ACATAAACAACAGACCGTTT+TGG + chr7_4:44752117-44752136 None:intergenic 35.0%
ACTCAATGAGGAACAAATAG+AGG - chr7_4:44752158-44752177 Msa1156490:CDS 35.0%
GCACATTGTTTGAAAGATTG+TGG - chr7_4:44752186-44752205 Msa1156490:CDS 35.0%
!! TTCTAGCTCATGAAGCAATA+GGG - chr7_4:44752319-44752338 Msa1156490:CDS 35.0%
! GTTTTGTAACACATTGTGGT+TGG - chr7_4:44752343-44752362 Msa1156490:CDS 35.0%
TATACTCAAAGCTTCCAATG+TGG + chr7_4:44752373-44752392 None:intergenic 35.0%
!! ACATTGGAAGCTTTGAGTAT+AGG - chr7_4:44752372-44752391 Msa1156490:CDS 35.0%
AAAGTGGCATTGCAACAATT+GGG + chr7_4:44752401-44752420 None:intergenic 35.0%
TAAAGTGGCATTGCAACAAT+TGG + chr7_4:44752402-44752421 None:intergenic 35.0%
CTTGTAGATGTTTGGAAAGT+AGG - chr7_4:44752450-44752469 Msa1156490:CDS 35.0%
ACAATTGAGACCATTTCTGA+TGG - chr7_4:44750937-44750956 Msa1156490:CDS 35.0%
ATAAGATCAGCAAGAGATTG+TGG + chr7_4:44751033-44751052 None:intergenic 35.0%
GTAATCTCTTGCTCAACAAA+GGG + chr7_4:44751231-44751250 None:intergenic 35.0%
AGTAATCTCTTGCTCAACAA+AGG + chr7_4:44751232-44751251 None:intergenic 35.0%
AGATCCAACCTTTCTTGATT+TGG - chr7_4:44751314-44751333 Msa1156490:CDS 35.0%
GATCCAACCTTTCTTGATTT+GGG - chr7_4:44751315-44751334 Msa1156490:CDS 35.0%
ATTCCCAAATCAAGAAAGGT+TGG + chr7_4:44751321-44751340 None:intergenic 35.0%
!! AACCTTTCTTGATTTGGGAA+TGG - chr7_4:44751320-44751339 Msa1156490:CDS 35.0%
TAAAAGAGAGATAAAGAGGG+AGG - chr7_4:44751579-44751598 Msa1156490:intron 35.0%
AAAAGAGAGATAAAGAGGGA+GGG - chr7_4:44751580-44751599 Msa1156490:intron 35.0%
GGCTAACAAAAGAAAGAGAT+AGG + chr7_4:44751719-44751738 None:intergenic 35.0%
CATACAAGTGGTGATTCAAT+TGG + chr7_4:44751895-44751914 None:intergenic 35.0%
TTACAAAAGCAGCATACAAG+TGG + chr7_4:44751907-44751926 None:intergenic 35.0%
!!! CTTGTATGCTGCTTTTGTAA+AGG - chr7_4:44751907-44751926 Msa1156490:intron 35.0%
AAAAATGTATACGGTAGGCA+AGG + chr7_4:44752012-44752031 None:intergenic 35.0%
! AAAGCGACGAAAGTATAGAA+TGG - chr7_4:44752079-44752098 Msa1156490:CDS 35.0%
! ACATAAACAACAGACCGTTT+TGG + chr7_4:44752117-44752136 None:intergenic 35.0%
ACTCAATGAGGAACAAATAG+AGG - chr7_4:44752158-44752177 Msa1156490:CDS 35.0%
GCACATTGTTTGAAAGATTG+TGG - chr7_4:44752186-44752205 Msa1156490:CDS 35.0%
!! TTCTAGCTCATGAAGCAATA+GGG - chr7_4:44752319-44752338 Msa1156490:CDS 35.0%
! GTTTTGTAACACATTGTGGT+TGG - chr7_4:44752343-44752362 Msa1156490:CDS 35.0%
TATACTCAAAGCTTCCAATG+TGG + chr7_4:44752373-44752392 None:intergenic 35.0%
!! ACATTGGAAGCTTTGAGTAT+AGG - chr7_4:44752372-44752391 Msa1156490:CDS 35.0%
AAAGTGGCATTGCAACAATT+GGG + chr7_4:44752401-44752420 None:intergenic 35.0%
TAAAGTGGCATTGCAACAAT+TGG + chr7_4:44752402-44752421 None:intergenic 35.0%
CTTGTAGATGTTTGGAAAGT+AGG - chr7_4:44752450-44752469 Msa1156490:CDS 35.0%
GAAATGGCAACACCAAACAA+TGG + chr7_4:44750786-44750805 None:intergenic 40.0%
AGCTTGGAGAATTCTAGCAT+TGG + chr7_4:44750829-44750848 None:intergenic 40.0%
! GTTTTTGTAGTAGGAAAGGG+TGG + chr7_4:44750890-44750909 None:intergenic 40.0%
!!! TCTGATGGTTTTGACAAAGG+TGG - chr7_4:44750952-44750971 Msa1156490:CDS 40.0%
TTTGCAACATCTAAGCACCA+AGG + chr7_4:44751117-44751136 None:intergenic 40.0%
ACTTCCTCAACTACAACCTA+GGG - chr7_4:44751260-44751279 Msa1156490:CDS 40.0%
TACTCGCATTGTGCTATACA+CGG - chr7_4:44751794-44751813 Msa1156490:intron 40.0%
GACTCTAAATGCTTTGTAGG+TGG - chr7_4:44751942-44751961 Msa1156490:intron 40.0%
CTGATTGGACAATGAAGACT+TGG - chr7_4:44751965-44751984 Msa1156490:intron 40.0%
! TGAAGACTTGGTCCAACTTT+AGG - chr7_4:44751977-44751996 Msa1156490:intron 40.0%
ATCAGAGAATGGCTTAGTTG+TGG - chr7_4:44752275-44752294 Msa1156490:CDS 40.0%
ATGAGCTAGAACCTCTAACT+GGG + chr7_4:44752310-44752329 None:intergenic 40.0%
!! GTTCTAGCTCATGAAGCAAT+AGG - chr7_4:44752318-44752337 Msa1156490:CDS 40.0%
! GGGTGTTTTGTAACACATTG+TGG - chr7_4:44752339-44752358 Msa1156490:CDS 40.0%
TTGTGGTTGGAATTCCACAT+TGG - chr7_4:44752356-44752375 Msa1156490:CDS 40.0%
GAAACTTTGCATCAATGCCT+TGG + chr7_4:44752431-44752450 None:intergenic 40.0%
TGTCATGCAATGGAAGACTT+TGG - chr7_4:44752581-44752600 Msa1156490:CDS 40.0%
GAAATGGCAACACCAAACAA+TGG + chr7_4:44750786-44750805 None:intergenic 40.0%
AGCTTGGAGAATTCTAGCAT+TGG + chr7_4:44750829-44750848 None:intergenic 40.0%
! GTTTTTGTAGTAGGAAAGGG+TGG + chr7_4:44750890-44750909 None:intergenic 40.0%
!!! TCTGATGGTTTTGACAAAGG+TGG - chr7_4:44750952-44750971 Msa1156490:CDS 40.0%
TTTGCAACATCTAAGCACCA+AGG + chr7_4:44751117-44751136 None:intergenic 40.0%
ACTTCCTCAACTACAACCTA+GGG - chr7_4:44751260-44751279 Msa1156490:CDS 40.0%
TACTCGCATTGTGCTATACA+CGG - chr7_4:44751794-44751813 Msa1156490:intron 40.0%
GACTCTAAATGCTTTGTAGG+TGG - chr7_4:44751942-44751961 Msa1156490:intron 40.0%
CTGATTGGACAATGAAGACT+TGG - chr7_4:44751965-44751984 Msa1156490:intron 40.0%
! TGAAGACTTGGTCCAACTTT+AGG - chr7_4:44751977-44751996 Msa1156490:intron 40.0%
ATCAGAGAATGGCTTAGTTG+TGG - chr7_4:44752275-44752294 Msa1156490:CDS 40.0%
ATGAGCTAGAACCTCTAACT+GGG + chr7_4:44752310-44752329 None:intergenic 40.0%
!! GTTCTAGCTCATGAAGCAAT+AGG - chr7_4:44752318-44752337 Msa1156490:CDS 40.0%
! GGGTGTTTTGTAACACATTG+TGG - chr7_4:44752339-44752358 Msa1156490:CDS 40.0%
TTGTGGTTGGAATTCCACAT+TGG - chr7_4:44752356-44752375 Msa1156490:CDS 40.0%
GAAACTTTGCATCAATGCCT+TGG + chr7_4:44752431-44752450 None:intergenic 40.0%
TGTCATGCAATGGAAGACTT+TGG - chr7_4:44752581-44752600 Msa1156490:CDS 40.0%
! ATGGACACTCTTGGTGGATA+TGG + chr7_4:44750767-44750786 None:intergenic 45.0%
CAAACAATGGACACTCTTGG+TGG + chr7_4:44750773-44750792 None:intergenic 45.0%
!! CACCAAGAGTGTCCATTGTT+TGG - chr7_4:44750771-44750790 Msa1156490:CDS 45.0%
CACCAAACAATGGACACTCT+TGG + chr7_4:44750776-44750795 None:intergenic 45.0%
ATCTCTTGCTCAACAAAGGG+AGG + chr7_4:44751228-44751247 None:intergenic 45.0%
CACTTCCTCAACTACAACCT+AGG - chr7_4:44751259-44751278 Msa1156490:CDS 45.0%
ATGTCCCTAGGTTGTAGTTG+AGG + chr7_4:44751267-44751286 None:intergenic 45.0%
! TAGAAAGAAGGCATGTCCCT+AGG + chr7_4:44751279-44751298 None:intergenic 45.0%
CGCCATTCCCAAATCAAGAA+AGG + chr7_4:44751325-44751344 None:intergenic 45.0%
CACAAAGCTGATTGGATCCT+TGG - chr7_4:44751360-44751379 Msa1156490:CDS 45.0%
GCTCAAAGAAGGAATTGCCA+AGG + chr7_4:44751380-44751399 None:intergenic 45.0%
TGGCAATTCCTTCTTTGAGC+TGG - chr7_4:44751380-44751399 Msa1156490:CDS 45.0%
CTCTTTCTCCAGCTCAAAGA+AGG + chr7_4:44751391-44751410 None:intergenic 45.0%
CTTCTTTGAGCTGGAGAAAG+AGG - chr7_4:44751389-44751408 Msa1156490:CDS 45.0%
CACAATGCGAGTAAAGCCTT+CGG + chr7_4:44751787-44751806 None:intergenic 45.0%
ATGCTTTGTAGGTGGCTGAT+TGG - chr7_4:44751950-44751969 Msa1156490:intron 45.0%
GAGTATGGCATCACTCAATG+AGG - chr7_4:44752146-44752165 Msa1156490:CDS 45.0%
AGAATGGCTTAGTTGTGGCA+TGG - chr7_4:44752280-44752299 Msa1156490:CDS 45.0%
CATGAGCTAGAACCTCTAAC+TGG + chr7_4:44752311-44752330 None:intergenic 45.0%
!! ATGCCACTTTACTCAGACCA+AGG - chr7_4:44752411-44752430 Msa1156490:CDS 45.0%
ATGCCTTGGTCTGAGTAAAG+TGG + chr7_4:44752417-44752436 None:intergenic 45.0%
! ATGGACACTCTTGGTGGATA+TGG + chr7_4:44750767-44750786 None:intergenic 45.0%
CAAACAATGGACACTCTTGG+TGG + chr7_4:44750773-44750792 None:intergenic 45.0%
!! CACCAAGAGTGTCCATTGTT+TGG - chr7_4:44750771-44750790 Msa1156490:CDS 45.0%
CACCAAACAATGGACACTCT+TGG + chr7_4:44750776-44750795 None:intergenic 45.0%
ATCTCTTGCTCAACAAAGGG+AGG + chr7_4:44751228-44751247 None:intergenic 45.0%
CACTTCCTCAACTACAACCT+AGG - chr7_4:44751259-44751278 Msa1156490:CDS 45.0%
ATGTCCCTAGGTTGTAGTTG+AGG + chr7_4:44751267-44751286 None:intergenic 45.0%
! TAGAAAGAAGGCATGTCCCT+AGG + chr7_4:44751279-44751298 None:intergenic 45.0%
CGCCATTCCCAAATCAAGAA+AGG + chr7_4:44751325-44751344 None:intergenic 45.0%
CACAAAGCTGATTGGATCCT+TGG - chr7_4:44751360-44751379 Msa1156490:CDS 45.0%
GCTCAAAGAAGGAATTGCCA+AGG + chr7_4:44751380-44751399 None:intergenic 45.0%
TGGCAATTCCTTCTTTGAGC+TGG - chr7_4:44751380-44751399 Msa1156490:CDS 45.0%
CTCTTTCTCCAGCTCAAAGA+AGG + chr7_4:44751391-44751410 None:intergenic 45.0%
CTTCTTTGAGCTGGAGAAAG+AGG - chr7_4:44751389-44751408 Msa1156490:CDS 45.0%
CACAATGCGAGTAAAGCCTT+CGG + chr7_4:44751787-44751806 None:intergenic 45.0%
ATGCTTTGTAGGTGGCTGAT+TGG - chr7_4:44751950-44751969 Msa1156490:intron 45.0%
GAGTATGGCATCACTCAATG+AGG - chr7_4:44752146-44752165 Msa1156490:CDS 45.0%
AGAATGGCTTAGTTGTGGCA+TGG - chr7_4:44752280-44752299 Msa1156490:CDS 45.0%
CATGAGCTAGAACCTCTAAC+TGG + chr7_4:44752311-44752330 None:intergenic 45.0%
!! ATGCCACTTTACTCAGACCA+AGG - chr7_4:44752411-44752430 Msa1156490:CDS 45.0%
ATGCCTTGGTCTGAGTAAAG+TGG + chr7_4:44752417-44752436 None:intergenic 45.0%
! GTGTTGCCATTTCCAGCACA+TGG - chr7_4:44750793-44750812 Msa1156490:CDS 50.0%
GTGTGACCATGTGCTGGAAA+TGG + chr7_4:44750802-44750821 None:intergenic 50.0%
! GGATTAGTGTGACCATGTGC+TGG + chr7_4:44750808-44750827 None:intergenic 50.0%
AGGTGGAGTTGCTGAAGCAA+AGG - chr7_4:44750969-44750988 Msa1156490:CDS 50.0%
! GGTTGTAGTTGAGGAAGTGC+AGG + chr7_4:44751258-44751277 None:intergenic 50.0%
AGAGAGATAAAGAGGGAGGG+AGG - chr7_4:44751583-44751602 Msa1156490:intron 50.0%
GAGAGATAAAGAGGGAGGGA+GGG - chr7_4:44751584-44751603 Msa1156490:intron 50.0%
TGTATGAGGCCTAACTCCGA+AGG - chr7_4:44751768-44751787 Msa1156490:intron 50.0%
CGAGTAAAGCCTTCGGAGTT+AGG + chr7_4:44751780-44751799 None:intergenic 50.0%
CATTGTGCTATACACGGCTC+TGG - chr7_4:44751800-44751819 Msa1156490:intron 50.0%
!! TGGTCCAACTTTAGGACCGT+AGG - chr7_4:44751985-44752004 Msa1156490:intron 50.0%
!! GGTCCAACTTTAGGACCGTA+GGG - chr7_4:44751986-44752005 Msa1156490:intron 50.0%
TGGGAGCTTAGTCTCTTCAG+AGG + chr7_4:44752238-44752257 None:intergenic 50.0%
GAAGACTTTGGCTGCAAGAG+CGG - chr7_4:44752593-44752612 Msa1156490:CDS 50.0%
!! GCAAGAGCGGTTGGTAAAGA+TGG - chr7_4:44752606-44752625 Msa1156490:CDS 50.0%
! GTGTTGCCATTTCCAGCACA+TGG - chr7_4:44750793-44750812 Msa1156490:CDS 50.0%
GTGTGACCATGTGCTGGAAA+TGG + chr7_4:44750802-44750821 None:intergenic 50.0%
! GGATTAGTGTGACCATGTGC+TGG + chr7_4:44750808-44750827 None:intergenic 50.0%
AGGTGGAGTTGCTGAAGCAA+AGG - chr7_4:44750969-44750988 Msa1156490:CDS 50.0%
! GGTTGTAGTTGAGGAAGTGC+AGG + chr7_4:44751258-44751277 None:intergenic 50.0%
AGAGAGATAAAGAGGGAGGG+AGG - chr7_4:44751583-44751602 Msa1156490:intron 50.0%
GAGAGATAAAGAGGGAGGGA+GGG - chr7_4:44751584-44751603 Msa1156490:intron 50.0%
TGTATGAGGCCTAACTCCGA+AGG - chr7_4:44751768-44751787 Msa1156490:intron 50.0%
CGAGTAAAGCCTTCGGAGTT+AGG + chr7_4:44751780-44751799 None:intergenic 50.0%
CATTGTGCTATACACGGCTC+TGG - chr7_4:44751800-44751819 Msa1156490:intron 50.0%
!! TGGTCCAACTTTAGGACCGT+AGG - chr7_4:44751985-44752004 Msa1156490:intron 50.0%
!! GGTCCAACTTTAGGACCGTA+GGG - chr7_4:44751986-44752005 Msa1156490:intron 50.0%
TGGGAGCTTAGTCTCTTCAG+AGG + chr7_4:44752238-44752257 None:intergenic 50.0%
GAAGACTTTGGCTGCAAGAG+CGG - chr7_4:44752593-44752612 Msa1156490:CDS 50.0%
!! GCAAGAGCGGTTGGTAAAGA+TGG - chr7_4:44752606-44752625 Msa1156490:CDS 50.0%
AGGCCCTACGGTCCTAAAGT+TGG + chr7_4:44751992-44752011 None:intergenic 55.0%
ATACGGTAGGCAAGGCCCTA+CGG + chr7_4:44752004-44752023 None:intergenic 55.0%
ACTTTGGCTGCAAGAGCGGT+TGG - chr7_4:44752597-44752616 Msa1156490:CDS 55.0%
AGGCCCTACGGTCCTAAAGT+TGG + chr7_4:44751992-44752011 None:intergenic 55.0%
ATACGGTAGGCAAGGCCCTA+CGG + chr7_4:44752004-44752023 None:intergenic 55.0%
ACTTTGGCTGCAAGAGCGGT+TGG - chr7_4:44752597-44752616 Msa1156490:CDS 55.0%
GGCATGGTGCTCCCAGTTAG+AGG - chr7_4:44752296-44752315 Msa1156490:CDS 60.0%
GGCATGGTGCTCCCAGTTAG+AGG - chr7_4:44752296-44752315 Msa1156490:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 44750751 44752692 44750751 ID=Msa1156490;Name=Msa1156490
chr7_4 mRNA 44750751 44752692 44750751 ID=Msa1156490-mRNA-1;Parent=Msa1156490;Name=Msa1156490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|2|0|463
chr7_4 exon 44752033 44752692 44752033 ID=Msa1156490-mRNA-1:exon:11575;Parent=Msa1156490-mRNA-1
chr7_4 exon 44750751 44751482 44750751 ID=Msa1156490-mRNA-1:exon:11574;Parent=Msa1156490-mRNA-1
chr7_4 CDS 44752033 44752692 44752033 ID=Msa1156490-mRNA-1:cds;Parent=Msa1156490-mRNA-1
chr7_4 CDS 44750751 44751482 44750751 ID=Msa1156490-mRNA-1:cds;Parent=Msa1156490-mRNA-1
Gene Sequence

>Msa1156490

ATGGAGAACAAAACCATATCCACCAAGAGTGTCCATTGTTTGGTGTTGCCATTTCCAGCACATGGTCACACTAATCCAATGCTAGAATTCTCCAAGCTTTTACAACAACAACATGGAGTCAAAGTAACACTTGTCACCACCCTTTCCTACTACAAAAACATACCTAAATTGCCAAATAATTCCATTACAATTGAGACCATTTCTGATGGTTTTGACAAAGGTGGAGTTGCTGAAGCAAAGGATTTTAAATTGTATTTGAATAAATTTTGGCAAGTTGGTCCACAATCTCTTGCTGATCTTATTAACAAACTTAACGCTAGATCAAACGACCATGTTGATTGTCTTATTTATGATTCATTCATGCCTTGGTGCTTAGATGTTGCAAAGAAATTTGGAATTGTTGGTGCTTCTTTTCTAACTCAAAATCTTGTTATGAATAGTATATACTATCATGTTCATTTGGGAAAGTTGAAACCTCCCTTTGTTGAGCAAGAGATTACTCTTCCTGCACTTCCTCAACTACAACCTAGGGACATGCCTTCTTTCTACTTTACATATGAAAAAGATCCAACCTTTCTTGATTTGGGAATGGCGCAGTTCTCTAATATTCACAAAGCTGATTGGATCCTTGGCAATTCCTTCTTTGAGCTGGAGAAAGAGGTGGCTGATTGGACAATGAAGACTTGGTCCAACTTTAGGACCGTAGGGCCTTGCCTACCGTATACATTTTTAGATAAGCGAGTTAAAGATGATGAAGATTATGGTATTGCACAATTAAAAAGCGACGAAAGTATAGAATGGCTAAATAATAAGCCAAAACGGTCTGTTGTTTATGTTTCATTTGGGAGTATGGCATCACTCAATGAGGAACAAATAGAGGAAGTAGCACATTGTTTGAAAGATTGTGGAAGTTACTTTTTATGGGTAGTGAAAACCTCTGAAGAGACTAAGCTCCCAAAAGACTTTGAAAAGAAATCAGAGAATGGCTTAGTTGTGGCATGGTGCTCCCAGTTAGAGGTTCTAGCTCATGAAGCAATAGGGTGTTTTGTAACACATTGTGGTTGGAATTCCACATTGGAAGCTTTGAGTATAGGAGTCCCAATTGTTGCAATGCCACTTTACTCAGACCAAGGCATTGATGCAAAGTTTCTTGTAGATGTTTGGAAAGTAGGAATTAGACCTTTAGTTGATGAGAAACAAATAGTGAGAAAAGATACATTGAAGGATTGTATATGTGAAATAATGGATATGAGTGAGAAAGGCAAAGAGATTATGAATAATGTCATGCAATGGAAGACTTTGGCTGCAAGAGCGGTTGGTAAAGATGGAAGTTCTCATAAAAACATGATAGAATTTGTGAATAGCTTGTTCCAAGTTTCAACCACAAATTAA

Protein sequence

>Msa1156490

MENKTISTKSVHCLVLPFPAHGHTNPMLEFSKLLQQQHGVKVTLVTTLSYYKNIPKLPNNSITIETISDGFDKGGVAEAKDFKLYLNKFWQVGPQSLADLINKLNARSNDHVDCLIYDSFMPWCLDVAKKFGIVGASFLTQNLVMNSIYYHVHLGKLKPPFVEQEITLPALPQLQPRDMPSFYFTYEKDPTFLDLGMAQFSNIHKADWILGNSFFELEKEVADWTMKTWSNFRTVGPCLPYTFLDKRVKDDEDYGIAQLKSDESIEWLNNKPKRSVVYVSFGSMASLNEEQIEEVAHCLKDCGSYFLWVVKTSEETKLPKDFEKKSENGLVVAWCSQLEVLAHEAIGCFVTHCGWNSTLEALSIGVPIVAMPLYSDQGIDAKFLVDVWKVGIRPLVDEKQIVRKDTLKDCICEIMDMSEKGKEIMNNVMQWKTLAARAVGKDGSSHKNMIEFVNSLFQVSTTN*