AlfalfaGEDB | Msa0535150

M. sativa cultivar zhongmu-4 / Msa0535150

KEGG: K00761
GO: GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0042594 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659
PFAM: PF14681.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535150	XP_013454956.1	89.199	287	19	5	1	281	1	281	1.22e-174	493

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535150	sp\|P93394\|UPP_TOBAC	76.444	225	46	3	63	281	1	224	1.80e-124	357

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535150	A0A072UGW9	89.199	287	19	5	1	281	1	281	5.85e-175	493

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0535150	Msa0589260	0.813364	2.657778e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535150	MtrunA17_Chr4g0008941	89.199	287	19	5	1	281	1	281	1.13e-178	493
Msa0535150	MtrunA17_Chr4g0057631	28.488	172	117	3	114	281	282	451	1.22e-16	79.3
Msa0535150	MtrunA17_Chr7g0225691	28.324	173	117	3	114	281	302	472	3.00e-15	75.5
Msa0535150	MtrunA17_Chr5g0447081	25.123	203	140	5	86	281	270	467	4.65e-14	72.0
Msa0535150	MtrunA17_Chr6g0457931	26.286	175	118	4	114	281	162	332	2.32e-12	66.2
Msa0535150	MtrunA17_Chr3g0102981	24.876	201	143	4	86	281	268	465	2.83e-12	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535150	AT3G53900.2	62.545	275	89	4	18	281	19	290	1.74e-116	337
Msa0535150	AT3G53900.1	69.778	225	62	2	63	281	1	225	1.52e-114	329
Msa0535150	AT4G26510.3	26.601	203	137	5	86	281	269	466	4.51e-15	75.1
Msa0535150	AT4G26510.2	26.601	203	137	5	86	281	269	466	4.51e-15	75.1
Msa0535150	AT4G26510.4	26.601	203	137	5	86	281	269	466	4.51e-15	75.1
Msa0535150	AT4G26510.1	26.601	203	137	5	86	281	269	466	4.51e-15	75.1
Msa0535150	AT5G40870.1	28.324	173	117	3	114	281	311	481	6.14e-15	75.1
Msa0535150	AT3G27440.3	27.861	201	137	4	86	281	203	400	1.28e-14	73.9
Msa0535150	AT3G27440.1	27.861	201	137	4	86	281	250	447	1.47e-14	73.9
Msa0535150	AT3G27190.1	28.000	175	115	5	114	281	311	481	2.82e-14	72.8

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Find 92 sgRNAs with CRISPR-Local

Find 497 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAAACTGACCGGAATA+TGG	0.293449	4_1:-11206451	None:intergenic
AAATCGCATGTGTTCGAATT+TGG	0.176252	4_1:+11206584	Msa0535150:three_prime_UTR
AACACTGGGTTTCTGTACTG+AGG	0.652765	4_1:+11199149	Msa0535150:CDS
AACCCTTGGTCATTAAGAAC+GGG	0.475183	4_1:-11206143	None:intergenic
AAGAGAGTAGGAGAAGAAGT+AGG	0.545047	4_1:-11198182	None:intergenic
AAGCGCCGAAGCAGCAACTT+TGG	0.416277	4_1:+11198442	Msa0535150:CDS
AAGCTAAGCGAGCAGTTCCC+AGG	0.447452	4_1:+11206022	Msa0535150:CDS
AATACATGAATGCTCATTGT+TGG	0.455917	4_1:+11206294	Msa0535150:exon
AATTGCAGGTGGTACTATAG+TGG	0.532764	4_1:+11204864	Msa0535150:intron
ACAATGAACTAAGTTTCCGA+TGG	0.629999	4_1:-11206509	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCTGAGGAAAGAAAATGA+GGG	+	chr4_1:11198733-11198752	Msa0535150:intron	30.0%
TGAAAAAATTGAGAGAAAGG+AGG	+	chr4_1:11198959-11198978	Msa0535150:intron	30.0%
GAAAAAATTGAGAGAAAGGA+GGG	+	chr4_1:11198960-11198979	Msa0535150:intron	30.0%
TTAAAGTGATCAAAAGCAGA+TGG	-	chr4_1:11199262-11199281	None:intergenic	30.0%
TTGATCACTTTAATCAGGAT+TGG	+	chr4_1:11199269-11199288	Msa0535150:intron	30.0%
TTTGGAAAACGAGAAATGAT+AGG	-	chr4_1:11199803-11199822	None:intergenic	30.0%
TAATTTGGCACACTTTGATT+TGG	-	chr4_1:11199830-11199849	None:intergenic	30.0%
AATGCAAAACTGATAACACA+TGG	-	chr4_1:11199975-11199994	None:intergenic	30.0%
TGCTAATATATGAAGCTTCA+AGG	+	chr4_1:11200198-11200217	Msa0535150:CDS	30.0%
GCTAATATATGAAGCTTCAA+GGG	+	chr4_1:11200199-11200218	Msa0535150:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	11197996	11206642	11197996	ID=Msa0535150;Name=Msa0535150
chr4_1	mRNA	11197996	11206642	11197996	ID=Msa0535150-mRNA-1;Parent=Msa0535150;Name=Msa0535150-mRNA-1;_AED=0.11;_eAED=0.11;_QI=93\|0.9\|0.90\|1\|1\|1\|11\|347\|281
chr4_1	exon	11197996	11198217	11197996	ID=Msa0535150-mRNA-1:exon:3564;Parent=Msa0535150-mRNA-1
chr4_1	exon	11198424	11198525	11198424	ID=Msa0535150-mRNA-1:exon:3565;Parent=Msa0535150-mRNA-1
chr4_1	exon	11199121	11199199	11199121	ID=Msa0535150-mRNA-1:exon:3566;Parent=Msa0535150-mRNA-1
chr4_1	exon	11200171	11200229	11200171	ID=Msa0535150-mRNA-1:exon:3567;Parent=Msa0535150-mRNA-1
chr4_1	exon	11200802	11200879	11200802	ID=Msa0535150-mRNA-1:exon:3568;Parent=Msa0535150-mRNA-1
chr4_1	exon	11201157	11201269	11201157	ID=Msa0535150-mRNA-1:exon:3569;Parent=Msa0535150-mRNA-1
chr4_1	exon	11201732	11201793	11201732	ID=Msa0535150-mRNA-1:exon:3570;Parent=Msa0535150-mRNA-1
chr4_1	exon	11204872	11204939	11204872	ID=Msa0535150-mRNA-1:exon:3571;Parent=Msa0535150-mRNA-1
chr4_1	exon	11205989	11206044	11205989	ID=Msa0535150-mRNA-1:exon:3572;Parent=Msa0535150-mRNA-1
chr4_1	exon	11206115	11206162	11206115	ID=Msa0535150-mRNA-1:exon:3573;Parent=Msa0535150-mRNA-1
chr4_1	exon	11206244	11206642	11206244	ID=Msa0535150-mRNA-1:exon:3574;Parent=Msa0535150-mRNA-1
chr4_1	five_prime_UTR	11197996	11198088	11197996	ID=Msa0535150-mRNA-1:five_prime_utr;Parent=Msa0535150-mRNA-1
chr4_1	CDS	11198089	11198217	11198089	ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1
chr4_1	CDS	11198424	11198525	11198424	ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1
chr4_1	CDS	11199121	11199199	11199121	ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1
chr4_1	CDS	11200171	11200229	11200171	ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1
chr4_1	CDS	11200802	11200879	11200802	ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1
chr4_1	CDS	11201157	11201269	11201157	ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1
chr4_1	CDS	11201732	11201793	11201732	ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1
chr4_1	CDS	11204872	11204939	11204872	ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1
chr4_1	CDS	11205989	11206044	11205989	ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1
chr4_1	CDS	11206115	11206162	11206115	ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1
chr4_1	CDS	11206244	11206295	11206244	ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1
chr4_1	three_prime_UTR	11206296	11206642	11206296	ID=Msa0535150-mRNA-1:three_prime_utr;Parent=Msa0535150-mRNA-1

Gene Sequence

>Msa0535150

ATGGCTTTGTCCCGCATTCACTGCCATATTAATCTCCCTTTCCCGTCCGATGCACCGCGTATTCAGTTCTCATCTCACACTTCATCCCTTCTTCCTACTTCTTCTCCTACTCTCTTCACAACAACAAAGAACCCTTTTTCAATTGCTAAGCGCCGAAGCAGCAACTTTGGAGCAGTGAAGTCTCAGATGACAATGGAAGACAAACCTCTCTCTCAAAATAACAGAATGCTTGTGTATGTGCCTGCCCATCCTTTGATCAAACACTGGGTTTCTGTACTGAGGAATGAGCAAACTCCCTGTCCTATTTTCAGAAATGCAATGGCTGAGTTGGGAAGGCTGCTAATATATGAAGCTTCAAGGGATTGGTTGCCAACTGTGTCTGGAGAGATACAATCACCGCTGGGAGTCGCCTCAGTGGAGTTCATTGATCCAAGGGAGCCTGTGGCTGTAATTCCAATCTTGAGAGCTGGTCTTGCTCTTGCTGAACATGCATCGTCAATCTTGCCTGCAACAAAAACATATCATCTAGGTAATGATACATGTATTGTACTAGTTCTGAGGTTACCGGACAAGTTTGCAGAAGGGTCTAAAGTATTTGTGGTTGATCCTATGCTTGCAACAGGTGGTACTATAGTGGCAGCCTTGAATCTCTTAAAAGAACGTGGAGTTGGTAACAAGCAGATTAAAGTGATATCTGCTTGCTCTTCACCTCCGGCTCTTGAAAAGCTAAGCGAGCAGTTCCCAGGGCTTCATGTGTATACTGGAATAATTGATCCCGTTCTTAATGACCAAGGGTTTATAATTCCTGGCCTTGGAGATGCTGGCGATCGCAGCTATGGTACATAA

Protein sequence

>Msa0535150

MALSRIHCHINLPFPSDAPRIQFSSHTSSLLPTSSPTLFTTTKNPFSIAKRRSSNFGAVKSQMTMEDKPLSQNNRMLVYVPAHPLIKHWVSVLRNEQTPCPIFRNAMAELGRLLIYEASRDWLPTVSGEIQSPLGVASVEFIDPREPVAVIPILRAGLALAEHASSILPATKTYHLGNDTCIVLVLRLPDKFAEGSKVFVVDPMLATGGTIVAALNLLKERGVGNKQIKVISACSSPPALEKLSEQFPGLHVYTGIIDPVLNDQGFIIPGLGDAGDRSYGT*