Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535150 | XP_013454956.1 | 89.199 | 287 | 19 | 5 | 1 | 281 | 1 | 281 | 1.22e-174 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535150 | sp|P93394|UPP_TOBAC | 76.444 | 225 | 46 | 3 | 63 | 281 | 1 | 224 | 1.80e-124 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535150 | A0A072UGW9 | 89.199 | 287 | 19 | 5 | 1 | 281 | 1 | 281 | 5.85e-175 | 493 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0535150 | Msa0589260 | 0.813364 | 2.657778e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535150 | MtrunA17_Chr4g0008941 | 89.199 | 287 | 19 | 5 | 1 | 281 | 1 | 281 | 1.13e-178 | 493 |
| Msa0535150 | MtrunA17_Chr4g0057631 | 28.488 | 172 | 117 | 3 | 114 | 281 | 282 | 451 | 1.22e-16 | 79.3 |
| Msa0535150 | MtrunA17_Chr7g0225691 | 28.324 | 173 | 117 | 3 | 114 | 281 | 302 | 472 | 3.00e-15 | 75.5 |
| Msa0535150 | MtrunA17_Chr5g0447081 | 25.123 | 203 | 140 | 5 | 86 | 281 | 270 | 467 | 4.65e-14 | 72.0 |
| Msa0535150 | MtrunA17_Chr6g0457931 | 26.286 | 175 | 118 | 4 | 114 | 281 | 162 | 332 | 2.32e-12 | 66.2 |
| Msa0535150 | MtrunA17_Chr3g0102981 | 24.876 | 201 | 143 | 4 | 86 | 281 | 268 | 465 | 2.83e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535150 | AT3G53900.2 | 62.545 | 275 | 89 | 4 | 18 | 281 | 19 | 290 | 1.74e-116 | 337 |
| Msa0535150 | AT3G53900.1 | 69.778 | 225 | 62 | 2 | 63 | 281 | 1 | 225 | 1.52e-114 | 329 |
| Msa0535150 | AT4G26510.3 | 26.601 | 203 | 137 | 5 | 86 | 281 | 269 | 466 | 4.51e-15 | 75.1 |
| Msa0535150 | AT4G26510.2 | 26.601 | 203 | 137 | 5 | 86 | 281 | 269 | 466 | 4.51e-15 | 75.1 |
| Msa0535150 | AT4G26510.4 | 26.601 | 203 | 137 | 5 | 86 | 281 | 269 | 466 | 4.51e-15 | 75.1 |
| Msa0535150 | AT4G26510.1 | 26.601 | 203 | 137 | 5 | 86 | 281 | 269 | 466 | 4.51e-15 | 75.1 |
| Msa0535150 | AT5G40870.1 | 28.324 | 173 | 117 | 3 | 114 | 281 | 311 | 481 | 6.14e-15 | 75.1 |
| Msa0535150 | AT3G27440.3 | 27.861 | 201 | 137 | 4 | 86 | 281 | 203 | 400 | 1.28e-14 | 73.9 |
| Msa0535150 | AT3G27440.1 | 27.861 | 201 | 137 | 4 | 86 | 281 | 250 | 447 | 1.47e-14 | 73.9 |
| Msa0535150 | AT3G27190.1 | 28.000 | 175 | 115 | 5 | 114 | 281 | 311 | 481 | 2.82e-14 | 72.8 |
| Msa0535150 | AT1G55810.3 | 25.123 | 203 | 140 | 5 | 86 | 281 | 266 | 463 | 2.70e-13 | 70.1 |
| Msa0535150 | AT1G55810.1 | 25.123 | 203 | 140 | 5 | 86 | 281 | 266 | 463 | 2.70e-13 | 70.1 |
| Msa0535150 | AT1G55810.6 | 25.123 | 203 | 140 | 5 | 86 | 281 | 266 | 463 | 2.70e-13 | 70.1 |
| Msa0535150 | AT1G55810.2 | 25.854 | 205 | 131 | 7 | 86 | 281 | 266 | 458 | 3.21e-12 | 66.6 |
| Msa0535150 | AT1G55810.7 | 25.854 | 205 | 131 | 7 | 86 | 281 | 256 | 448 | 3.25e-12 | 66.6 |
| Msa0535150 | AT1G55810.5 | 33.654 | 104 | 68 | 1 | 178 | 281 | 383 | 485 | 6.30e-12 | 65.9 |
| Msa0535150 | AT1G55810.4 | 33.654 | 104 | 68 | 1 | 178 | 281 | 383 | 485 | 6.30e-12 | 65.9 |
Find 92 sgRNAs with CRISPR-Local
Find 497 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCGCATGTGTTCGAATT+TGG | 0.176252 | 4_1:+11206584 | Msa0535150:three_prime_UTR |
| GATTGGTTTGGATATTAATT+TGG | 0.189833 | 4_1:+11206542 | Msa0535150:three_prime_UTR |
| CGGCGCTTAGCAATTGAAAA+AGG | 0.190312 | 4_1:-11198427 | None:intergenic |
| TTGTCTAGGTTTATAATTCC+TGG | 0.250188 | 4_1:+11206236 | Msa0535150:intron |
| TTCGAATTTGGCACCTAGTT+TGG | 0.256542 | 4_1:+11206596 | Msa0535150:three_prime_UTR |
| AAATCAAACTGACCGGAATA+TGG | 0.293449 | 4_1:-11206451 | None:intergenic |
| TGCAGGCTTCATGTGTATAC+TGG | 0.309029 | 4_1:+11206110 | Msa0535150:intron |
| TAAAGTTGTAAACTATTTAT+CGG | 0.317264 | 4_1:+11206336 | Msa0535150:three_prime_UTR |
| TCGAATTTGGCACCTAGTTT+GGG | 0.334143 | 4_1:+11206597 | Msa0535150:three_prime_UTR |
| CTGCTCCAAAGTTGCTGCTT+CGG | 0.361949 | 4_1:-11198447 | None:intergenic |
| GTTTGGATATTAATTTGGTT+TGG | 0.369092 | 4_1:+11206547 | Msa0535150:three_prime_UTR |
| GCAAGACCAGCTCTCAAGAT+TGG | 0.385205 | 4_1:-11201163 | None:intergenic |
| CAAAACATAACATTCATTCA+TGG | 0.393386 | 4_1:+11198070 | Msa0535150:exon |
| GACCCTTCTGCAAACTTGTC+CGG | 0.411067 | 4_1:-11201736 | None:intergenic |
| AAGCGCCGAAGCAGCAACTT+TGG | 0.416277 | 4_1:+11198442 | Msa0535150:CDS |
| AGGAGAAGAAGTAGGAAGAA+GGG | 0.416384 | 4_1:-11198174 | None:intergenic |
| GTGAAGAGAACAGATTGGTT+TGG | 0.420166 | 4_1:+11206530 | Msa0535150:three_prime_UTR |
| ATATTCCGGTCAGTTTGATT+TGG | 0.422444 | 4_1:+11206453 | Msa0535150:three_prime_UTR |
| ACGGGAAAGGGAGATTAATA+TGG | 0.432321 | 4_1:-11198112 | None:intergenic |
| GAACTTCCTACCTAGTTCCT+AGG | 0.446025 | 4_1:+11198043 | Msa0535150:five_prime_UTR |
| AAGCTAAGCGAGCAGTTCCC+AGG | 0.447452 | 4_1:+11206022 | Msa0535150:CDS |
| TAGGAGAAGAAGTAGGAAGA+AGG | 0.449933 | 4_1:-11198175 | None:intergenic |
| AATACATGAATGCTCATTGT+TGG | 0.455917 | 4_1:+11206294 | Msa0535150:exon |
| AGAAGGGTCTAAAGTATTTG+TGG | 0.459625 | 4_1:+11201750 | Msa0535150:CDS |
| CTAACAGCCACAGGCTCCCT+TGG | 0.460972 | 4_1:-11200862 | None:intergenic |
| TATATGAAGCTTCAAGGGAT+TGG | 0.461864 | 4_1:+11200204 | Msa0535150:CDS |
| ATTCCTGGCCTTGGAGATGC+TGG | 0.464404 | 4_1:+11206251 | Msa0535150:CDS |
| ATCTGCTTGCTCTTCACCTC+CGG | 0.464749 | 4_1:+11205991 | Msa0535150:CDS |
| AGGTTTATAATTCCTGGCCT+TGG | 0.467282 | 4_1:+11206242 | Msa0535150:intron |
| TGCTAATATATGAAGCTTCA+AGG | 0.470438 | 4_1:+11200198 | Msa0535150:CDS |
| AACCCTTGGTCATTAAGAAC+GGG | 0.475183 | 4_1:-11206143 | None:intergenic |
| CCCATCCTTTGATCAAACAC+TGG | 0.476833 | 4_1:+11199134 | Msa0535150:CDS |
| GCGGTGCATCGGACGGGAAA+GGG | 0.483016 | 4_1:-11198124 | None:intergenic |
| CCATCCTTTGATCAAACACT+GGG | 0.483732 | 4_1:+11199135 | Msa0535150:CDS |
| CAGTTTGATTTGGTAGTCAC+CGG | 0.485181 | 4_1:+11206463 | Msa0535150:three_prime_UTR |
| ATTAATATGGCAGTGAATGC+GGG | 0.490118 | 4_1:-11198099 | None:intergenic |
| TGAAGCTTCAAGGGATTGGT+TGG | 0.494192 | 4_1:+11200208 | Msa0535150:CDS |
| CGCGGTGCATCGGACGGGAA+AGG | 0.502149 | 4_1:-11198125 | None:intergenic |
| GTTGATCCTATGCTTGCAAC+AGG | 0.506785 | 4_1:+11201772 | Msa0535150:CDS |
| CTCTTAAAAGAACGTGGAGT+TGG | 0.507246 | 4_1:+11204898 | Msa0535150:CDS |
| TCGCCAGCATCTCCAAGGCC+AGG | 0.513605 | 4_1:-11206254 | None:intergenic |
| TGGAGAGATACAATCACCGC+TGG | 0.517187 | 4_1:+11200813 | Msa0535150:CDS |
| CCCAGTGTTTGATCAAAGGA+TGG | 0.523542 | 4_1:-11199135 | None:intergenic |
| TGTTTGATCAAAGGATGGGC+AGG | 0.527474 | 4_1:-11199130 | None:intergenic |
| AATTGCAGGTGGTACTATAG+TGG | 0.532764 | 4_1:+11204864 | Msa0535150:intron |
| GGAAATGCAATGGCTGAGTT+GGG | 0.535945 | 4_1:+11200170 | Msa0535150:intron |
| AGGAAATGCAATGGCTGAGT+TGG | 0.537324 | 4_1:+11200169 | Msa0535150:intron |
| GATGCTGGCGATCGCAGCTA+TGG | 0.540707 | 4_1:+11206266 | Msa0535150:CDS |
| AAGAGAGTAGGAGAAGAAGT+AGG | 0.545047 | 4_1:-11198182 | None:intergenic |
| TATATTTGTAGGAAATGCAA+TGG | 0.549000 | 4_1:+11200160 | Msa0535150:intron |
| GCACTCACTGAAAATAGGAC+AGG | 0.551111 | 4_1:-11199185 | None:intergenic |
| GACTACCAAATCAAACTGAC+CGG | 0.552817 | 4_1:-11206458 | None:intergenic |
| GAATACGCGGTGCATCGGAC+GGG | 0.553568 | 4_1:-11198130 | None:intergenic |
| GATTAATATGGCAGTGAATG+CGG | 0.556349 | 4_1:-11198100 | None:intergenic |
| TGAATACGCGGTGCATCGGA+CGG | 0.560387 | 4_1:-11198131 | None:intergenic |
| ATCCCGTTCTTAATGACCAA+GGG | 0.562303 | 4_1:+11206141 | Msa0535150:CDS |
| TGCGATCGCCAGCATCTCCA+AGG | 0.563908 | 4_1:-11206259 | None:intergenic |
| GCTAATATATGAAGCTTCAA+GGG | 0.566374 | 4_1:+11200199 | Msa0535150:CDS |
| AGCTAAGCGAGCAGTTCCCA+GGG | 0.567648 | 4_1:+11206023 | Msa0535150:CDS |
| GTAATTCCAATCTTGAGAGC+TGG | 0.568731 | 4_1:+11201157 | Msa0535150:CDS |
| CATGTATTGTACTAGTTCTG+AGG | 0.571916 | 4_1:+11201248 | Msa0535150:CDS |
| CAGTGGAGTTCATTGATCCA+AGG | 0.575844 | 4_1:+11200845 | Msa0535150:CDS |
| CAACCCTTGGTCATTAAGAA+CGG | 0.576224 | 4_1:-11206144 | None:intergenic |
| TTACCGGACAAGTTTGCAGA+AGG | 0.578249 | 4_1:+11201733 | Msa0535150:CDS |
| GAAACCCAGTGTTTGATCAA+AGG | 0.579271 | 4_1:-11199139 | None:intergenic |
| AGTGGAGTTCATTGATCCAA+GGG | 0.589415 | 4_1:+11200846 | Msa0535150:CDS |
| TCATTGTGAAGAGAACAGAT+TGG | 0.591533 | 4_1:+11206525 | Msa0535150:three_prime_UTR |
| TTTGTTGTTGTGAAGAGAGT+AGG | 0.592585 | 4_1:-11198194 | None:intergenic |
| GAACTGAATACGCGGTGCAT+CGG | 0.593448 | 4_1:-11198135 | None:intergenic |
| TGTTATCCTAGGAACTAGGT+AGG | 0.593965 | 4_1:-11198049 | None:intergenic |
| TACATACCTGTTGCAAGCAT+AGG | 0.594852 | 4_1:-11201778 | None:intergenic |
| CATTGATCCAAGGGAGCCTG+TGG | 0.595205 | 4_1:+11200855 | Msa0535150:CDS |
| ACTATCGAAATGATTTAGAC+CGG | 0.600091 | 4_1:-11206482 | None:intergenic |
| ACCGCTGGGAGTCGCCTCAG+TGG | 0.600355 | 4_1:+11200828 | Msa0535150:CDS |
| TGGTAACAAGCAGATTAAAG+TGG | 0.604641 | 4_1:+11204918 | Msa0535150:CDS |
| ATGCAATGGCTGAGTTGGGA+AGG | 0.612460 | 4_1:+11200174 | Msa0535150:CDS |
| CCAGTGTTTGATCAAAGGAT+GGG | 0.613021 | 4_1:-11199134 | None:intergenic |
| TGTATCTCTCCAGACACAGT+TGG | 0.615577 | 4_1:-11200802 | None:intergenic |
| CACTCACTGAAAATAGGACA+GGG | 0.627646 | 4_1:-11199184 | None:intergenic |
| ACAATGAACTAAGTTTCCGA+TGG | 0.629999 | 4_1:-11206509 | None:intergenic |
| TCCACTGAGGCGACTCCCAG+CGG | 0.630429 | 4_1:-11200829 | None:intergenic |
| TACTCTCTTCACAACAACAA+AGG | 0.634414 | 4_1:+11198196 | Msa0535150:CDS |
| AGTATGGTACTAACAGCCAC+AGG | 0.638274 | 4_1:-11200871 | None:intergenic |
| TACCGGACAAGTTTGCAGAA+GGG | 0.638294 | 4_1:+11201734 | Msa0535150:CDS |
| GATCCCGTTCTTAATGACCA+AGG | 0.640292 | 4_1:+11206140 | Msa0535150:CDS |
| CATTTCGATAGTCTGACCAT+CGG | 0.647175 | 4_1:+11206493 | Msa0535150:three_prime_UTR |
| AACACTGGGTTTCTGTACTG+AGG | 0.652765 | 4_1:+11199149 | Msa0535150:CDS |
| GGAGAGATACAATCACCGCT+GGG | 0.653180 | 4_1:+11200814 | Msa0535150:CDS |
| TTGAATCTCTTAAAAGAACG+TGG | 0.656928 | 4_1:+11204892 | Msa0535150:CDS |
| AGTGAAGTCTCAGATGACAA+TGG | 0.697597 | 4_1:+11198468 | Msa0535150:CDS |
| TGGATCAATGAACTCCACTG+AGG | 0.738069 | 4_1:-11200842 | None:intergenic |
| TGAGATGAGAACTGAATACG+CGG | 0.824067 | 4_1:-11198143 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATAAAATAAAAATT+TGG | + | chr4_1:11204372-11204391 | Msa0535150:intron | 0.0% |
| !! | GAAAAAGATAATAATAAAAA+GGG | - | chr4_1:11198268-11198287 | None:intergenic | 10.0% |
| !! | AGAAAAAGATAATAATAAAA+AGG | - | chr4_1:11198269-11198288 | None:intergenic | 10.0% |
| !!! | AATATTCATATATCATTTTA+AGG | + | chr4_1:11200490-11200509 | Msa0535150:intron | 10.0% |
| !!! | TTATTTACACTAATATTTTT+AGG | + | chr4_1:11200907-11200926 | Msa0535150:intron | 10.0% |
| !!! | TTTTAACTAAATAGTAAATA+CGG | + | chr4_1:11200984-11201003 | Msa0535150:intron | 10.0% |
| !!! | TGTTATTAGATTTTTTTTAA+TGG | + | chr4_1:11204226-11204245 | Msa0535150:intron | 10.0% |
| !!! | TTTTATAAAATTAAAACCAT+TGG | - | chr4_1:11204364-11204383 | None:intergenic | 10.0% |
| !! | TTATAAAATAAAAATTTGGA+TGG | + | chr4_1:11204376-11204395 | Msa0535150:intron | 10.0% |
| !!! | TTTTATTCCTTTTATTGTTT+TGG | + | chr4_1:11199037-11199056 | Msa0535150:intron | 15.0% |
| !!! | TTGTATAAAAGTCAAAATTT+TGG | - | chr4_1:11199210-11199229 | None:intergenic | 15.0% |
| !!! | AAAAAGGTTAAATATGTTTT+TGG | + | chr4_1:11199615-11199634 | Msa0535150:intron | 15.0% |
| !!! | TAATTATCATATTTTTCACT+TGG | + | chr4_1:11200256-11200275 | Msa0535150:intron | 15.0% |
| !!! | TCATACAATATAATTTTACA+AGG | + | chr4_1:11200365-11200384 | Msa0535150:intron | 15.0% |
| !! | AAAAATAAATGTAAATCTGT+TGG | - | chr4_1:11200753-11200772 | None:intergenic | 15.0% |
| !! | ATAAACTTATAATAAGATGA+TGG | + | chr4_1:11201344-11201363 | Msa0535150:intron | 15.0% |
| !! | ATCATAATATATAGAGAATA+GGG | + | chr4_1:11201378-11201397 | Msa0535150:intron | 15.0% |
| !! | TCGTTAAAAAAATGTTAATA+TGG | - | chr4_1:11202194-11202213 | None:intergenic | 15.0% |
| !!! | ATTAACATTTTTTTAACGAA+TGG | + | chr4_1:11202195-11202214 | Msa0535150:intron | 15.0% |
| !! | ATAGTTAACTAAGTAAATTA+AGG | - | chr4_1:11202862-11202881 | None:intergenic | 15.0% |
| !! | AAATACACTAAAATCAAATT+AGG | - | chr4_1:11203066-11203085 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTAATGGAATTA+TGG | + | chr4_1:11204234-11204253 | Msa0535150:intron | 15.0% |
| !!! | TTTTTATTACTTTTATCCAA+TGG | + | chr4_1:11204345-11204364 | Msa0535150:intron | 15.0% |
| !! | AAATATCAATCAAATCATAA+TGG | + | chr4_1:11204738-11204757 | Msa0535150:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTGGTAG+TGG | - | chr4_1:11205100-11205119 | None:intergenic | 15.0% |
| !!! | TTCTAATTATTAAATTTTGC+AGG | + | chr4_1:11206093-11206112 | Msa0535150:intron | 15.0% |
| !! | TAAAGTTGTAAACTATTTAT+CGG | + | chr4_1:11206336-11206355 | Msa0535150:three_prime_UTR | 15.0% |
| !! | AGAAAACTGACAAAAAAAAA+AGG | - | chr4_1:11198298-11198317 | None:intergenic | 20.0% |
| !!! | TTCTGTGTTTTTTTTTTGTT+GGG | + | chr4_1:11198576-11198595 | Msa0535150:intron | 20.0% |
| !!! | TGCATTTTCTTTGTTTATTT+TGG | + | chr4_1:11198624-11198643 | Msa0535150:intron | 20.0% |
| !!! | TTTTTCAAAGAAAGATCTTT+TGG | + | chr4_1:11198683-11198702 | Msa0535150:intron | 20.0% |
| !!! | TTTTCAAAGAAAGATCTTTT+GGG | + | chr4_1:11198684-11198703 | Msa0535150:intron | 20.0% |
| !!! | TTTTTTTTTTGTTGCATGTT+TGG | + | chr4_1:11198829-11198848 | Msa0535150:intron | 20.0% |
| !!! | TTGCAAATCTTTTATGATTT+TGG | + | chr4_1:11198895-11198914 | Msa0535150:intron | 20.0% |
| !!! | TTGACTTTTATACAATACTT+TGG | + | chr4_1:11199215-11199234 | Msa0535150:intron | 20.0% |
| !! | CACTATTAAGTATAAAATGT+TGG | + | chr4_1:11199402-11199421 | Msa0535150:intron | 20.0% |
| !!! | TTTGAAAACATTGTGATTTT+TGG | + | chr4_1:11199471-11199490 | Msa0535150:intron | 20.0% |
| !! | ACGAAATTCTGAATATTTAA+AGG | - | chr4_1:11199642-11199661 | None:intergenic | 20.0% |
| !! | CTATTTGATGAATTATATGA+AGG | + | chr4_1:11200113-11200132 | Msa0535150:intron | 20.0% |
| !! | TTGAAGTTTCTTATATTTGT+AGG | + | chr4_1:11200149-11200168 | Msa0535150:intron | 20.0% |
| !! | ATTTAATTGATTAACCACAA+GGG | - | chr4_1:11200321-11200340 | None:intergenic | 20.0% |
| !! | TATTTAATTGATTAACCACA+AGG | - | chr4_1:11200322-11200341 | None:intergenic | 20.0% |
| !! | GGTTAATCAATTAAATATTC+AGG | + | chr4_1:11200325-11200344 | Msa0535150:intron | 20.0% |
| !!! | CAATATAATTTTACAAGGTT+TGG | + | chr4_1:11200370-11200389 | Msa0535150:intron | 20.0% |
| !! | ATAAAAGTAAGTAACAAGAT+AGG | - | chr4_1:11200525-11200544 | None:intergenic | 20.0% |
| !!! | TTTTAAATCTAGAGTTCAAT+AGG | + | chr4_1:11200556-11200575 | Msa0535150:intron | 20.0% |
| !! | TCAATTATTAAATGTAGAAC+TGG | - | chr4_1:11200962-11200981 | None:intergenic | 20.0% |
| !! | CATCATAATATATAGAGAAT+AGG | + | chr4_1:11201377-11201396 | Msa0535150:intron | 20.0% |
| !! | TACTTGTTTAAATATACAGT+GGG | - | chr4_1:11201521-11201540 | None:intergenic | 20.0% |
| !! | TTACTTGTTTAAATATACAG+TGG | - | chr4_1:11201522-11201541 | None:intergenic | 20.0% |
| !! | GATATGAATATATAACAAAC+GGG | - | chr4_1:11201695-11201714 | None:intergenic | 20.0% |
| !! | GGATATGAATATATAACAAA+CGG | - | chr4_1:11201696-11201715 | None:intergenic | 20.0% |
| !!! | AATTTTGGTTTGGATTATAA+TGG | + | chr4_1:11202115-11202134 | Msa0535150:intron | 20.0% |
| !! | TATCATTACATTGAATAAAC+TGG | - | chr4_1:11202583-11202602 | None:intergenic | 20.0% |
| !! | AAATGTAAGTTTAAAAGAAG+TGG | - | chr4_1:11202617-11202636 | None:intergenic | 20.0% |
| !!! | AATTGTTTTTCATATTAGTG+TGG | - | chr4_1:11203184-11203203 | None:intergenic | 20.0% |
| !! | TTAGAATATTTACCAAACTT+TGG | - | chr4_1:11203737-11203756 | None:intergenic | 20.0% |
| !! | ACAAATAATGTTTAGTTGTT+TGG | + | chr4_1:11203756-11203775 | Msa0535150:intron | 20.0% |
| !! | TATTAAACATCATTATGTCT+TGG | + | chr4_1:11203794-11203813 | Msa0535150:intron | 20.0% |
| !! | AAAAAAAAATACATCGACAT+AGG | + | chr4_1:11203884-11203903 | Msa0535150:intron | 20.0% |
| !! | TATTATTATGCAAAACGATT+TGG | + | chr4_1:11203951-11203970 | Msa0535150:intron | 20.0% |
| !! | TTAATGTAAAATCAGATCAA+GGG | + | chr4_1:11203974-11203993 | Msa0535150:intron | 20.0% |
| !! | GTATTATGATTTATCCAATT+TGG | - | chr4_1:11204010-11204029 | None:intergenic | 20.0% |
| !! | TACAAATAATTTAGTAAGTG+TGG | + | chr4_1:11204040-11204059 | Msa0535150:intron | 20.0% |
| !!! | ATTCGTTCAAATTTTTCTAA+AGG | - | chr4_1:11204194-11204213 | None:intergenic | 20.0% |
| !! | TTTAGAAAAATTTGAACGAA+TGG | + | chr4_1:11204193-11204212 | Msa0535150:intron | 20.0% |
| !!! | AATTTTGGTTTGCATTATAA+TGG | - | chr4_1:11204275-11204294 | None:intergenic | 20.0% |
| !!! | GAAAAAAATAGTTAATGGAT+TGG | - | chr4_1:11204429-11204448 | None:intergenic | 20.0% |
| !! | CAATCGAAAAAAATAGTTAA+TGG | - | chr4_1:11204434-11204453 | None:intergenic | 20.0% |
| !!! | TTAACTATTTTTTTCGATTG+TGG | + | chr4_1:11204434-11204453 | Msa0535150:intron | 20.0% |
| !!! | TTTCATAATTTTTACAACCT+TGG | + | chr4_1:11204694-11204713 | Msa0535150:intron | 20.0% |
| !! | AGATATTGTAAATAACACTA+GGG | - | chr4_1:11204803-11204822 | None:intergenic | 20.0% |
| !! | TAGATATTGTAAATAACACT+AGG | - | chr4_1:11204804-11204823 | None:intergenic | 20.0% |
| !!! | TTATGTTATTTATGAATTGC+AGG | + | chr4_1:11204850-11204869 | Msa0535150:intron | 20.0% |
| !!! | TATTTATAAGCTTGTTAAGA+TGG | - | chr4_1:11205372-11205391 | None:intergenic | 20.0% |
| !! | CAGAAAATAAACTCAAATAA+GGG | - | chr4_1:11205464-11205483 | None:intergenic | 20.0% |
| !! | ACAGAAAATAAACTCAAATA+AGG | - | chr4_1:11205465-11205484 | None:intergenic | 20.0% |
| !! | TATAAACACTCATATGATAA+AGG | + | chr4_1:11205688-11205707 | Msa0535150:intron | 20.0% |
| !!! | CTTAAATTTCCAATATTTTG+TGG | + | chr4_1:11205831-11205850 | Msa0535150:intron | 20.0% |
| !! | TTGATCAATTACCTAATTAA+TGG | + | chr4_1:11205946-11205965 | Msa0535150:intron | 20.0% |
| !! | TAATTAGAAAACTAAATGCT+TGG | - | chr4_1:11206082-11206101 | None:intergenic | 20.0% |
| !!! | ATGTTATGTTTTGTTATCCT+AGG | - | chr4_1:11198063-11198082 | None:intergenic | 25.0% |
| ! | CAAAACATAACATTCATTCA+TGG | + | chr4_1:11198070-11198089 | Msa0535150:exon | 25.0% |
| !!! | GTTCTGTGTTTTTTTTTTGT+TGG | + | chr4_1:11198575-11198594 | Msa0535150:intron | 25.0% |
| !! | TTTCAAAGAAAGATCTTTTG+GGG | + | chr4_1:11198685-11198704 | Msa0535150:intron | 25.0% |
| !!! | TTATGAGGTTTTTGTTTGTT+TGG | + | chr4_1:11198710-11198729 | Msa0535150:intron | 25.0% |
| ! | TGATGAAAAAATTGAGAGAA+AGG | + | chr4_1:11198956-11198975 | Msa0535150:intron | 25.0% |
| !!! | TATTCCTTTTATTGTTTTGG+TGG | + | chr4_1:11199040-11199059 | Msa0535150:intron | 25.0% |
| ! | AAATCCACCAAAACAATAAA+AGG | - | chr4_1:11199047-11199066 | None:intergenic | 25.0% |
| !! | TGATTGATAACAATGTTTGT+TGG | + | chr4_1:11199088-11199107 | Msa0535150:intron | 25.0% |
| !!! | AATGTTTGTTGGATTTTTGA+AGG | + | chr4_1:11199099-11199118 | Msa0535150:intron | 25.0% |
| ! | CATCCAATGTTGTTAAATAT+CGG | + | chr4_1:11199334-11199353 | Msa0535150:intron | 25.0% |
| ! | TAACCGATATTTAACAACAT+TGG | - | chr4_1:11199340-11199359 | None:intergenic | 25.0% |
| ! | TATAAAATGTTGGCAAATAG+TGG | + | chr4_1:11199412-11199431 | Msa0535150:intron | 25.0% |
| ! | ATAAAATGTTGGCAAATAGT+GGG | + | chr4_1:11199413-11199432 | Msa0535150:intron | 25.0% |
| ! | ACATAAACAGTAACAATTGA+TGG | - | chr4_1:11199535-11199554 | None:intergenic | 25.0% |
| ! | ATCAATTGTTACTGTTTATG+TGG | + | chr4_1:11199534-11199553 | Msa0535150:intron | 25.0% |
| ! | GAATGCATGCTTATAAAAAA+AGG | + | chr4_1:11199599-11199618 | Msa0535150:intron | 25.0% |
| !!! | ATGTGTGATTTTATTTTGCA+TGG | - | chr4_1:11199672-11199691 | None:intergenic | 25.0% |
| !!! | AGATATTAGTAGTTTGTTCA+AGG | - | chr4_1:11199701-11199720 | None:intergenic | 25.0% |
| !!! | AAGAAATTAAAGTGTTGTCT+GGG | - | chr4_1:11199753-11199772 | None:intergenic | 25.0% |
| !!! | AAAGAAATTAAAGTGTTGTC+TGG | - | chr4_1:11199754-11199773 | None:intergenic | 25.0% |
| !!! | ATAAGCGATTTTGGTTAATT+TGG | - | chr4_1:11199845-11199864 | None:intergenic | 25.0% |
| ! | AAATTAACCAAAATCGCTTA+TGG | + | chr4_1:11199844-11199863 | Msa0535150:intron | 25.0% |
| !! | TCAAAATTTGTTTGTCCATT+TGG | - | chr4_1:11199904-11199923 | None:intergenic | 25.0% |
| !! | AAATGGACAAACAAATTTTG+AGG | + | chr4_1:11199903-11199922 | Msa0535150:intron | 25.0% |
| ! | GTTAACCAAAAAGAAAAGAA+AGG | - | chr4_1:11200044-11200063 | None:intergenic | 25.0% |
| ! | TATATTTGTAGGAAATGCAA+TGG | + | chr4_1:11200160-11200179 | Msa0535150:intron | 25.0% |
| ! | ATTATAGCATAGCATGAAAT+AGG | - | chr4_1:11200240-11200259 | None:intergenic | 25.0% |
| ! | GGATTTACAAGATATATTGA+AGG | - | chr4_1:11200300-11200319 | None:intergenic | 25.0% |
| !! | TAATTTTACAAGGTTTGGAT+TGG | + | chr4_1:11200375-11200394 | Msa0535150:intron | 25.0% |
| !! | AATTTTACAAGGTTTGGATT+GGG | + | chr4_1:11200376-11200395 | Msa0535150:intron | 25.0% |
| ! | TTGGATCATTTATGATAAGA+AGG | - | chr4_1:11200609-11200628 | None:intergenic | 25.0% |
| ! | TATCATAAATGATCCAAAAC+TGG | + | chr4_1:11200612-11200631 | Msa0535150:intron | 25.0% |
| ! | TAAATGTAAATCTGTTGGTA+TGG | - | chr4_1:11200748-11200767 | None:intergenic | 25.0% |
| ! | TAAACATATTGAAAGCAGTA+TGG | - | chr4_1:11200890-11200909 | None:intergenic | 25.0% |
| !! | TAAAAATCTGAGCTTAGTTT+TGG | - | chr4_1:11201038-11201057 | None:intergenic | 25.0% |
| ! | GAAAAACTGATATAAGATTC+AGG | - | chr4_1:11201135-11201154 | None:intergenic | 25.0% |
| !! | GAATCTTATATCAGTTTTTC+AGG | + | chr4_1:11201135-11201154 | Msa0535150:intron | 25.0% |
| ! | ATCCAACAAACATGATTTAT+CGG | + | chr4_1:11201274-11201293 | Msa0535150:intron | 25.0% |
| !!! | TTCTTTTGTTTCTTTCGAAA+AGG | + | chr4_1:11201467-11201486 | Msa0535150:intron | 25.0% |
| ! | CAGATGGAAAAAGAATTAAA+AGG | - | chr4_1:11201853-11201872 | None:intergenic | 25.0% |
| ! | ATGAATTTCTTTGGTATTCA+TGG | + | chr4_1:11201875-11201894 | Msa0535150:intron | 25.0% |
| ! | ATATTCAGATTAGATTGAGT+TGG | + | chr4_1:11201974-11201993 | Msa0535150:intron | 25.0% |
| !! | GTCATTTGTTAATGTGAAAT+TGG | - | chr4_1:11202446-11202465 | None:intergenic | 25.0% |
| !! | GTCATTTGTTAATGTGAAAT+TGG | - | chr4_1:11202446-11202465 | None:intergenic | 25.0% |
| ! | GAATACTATATAGTCATATC+TGG | - | chr4_1:11202642-11202661 | None:intergenic | 25.0% |
| ! | GAAACATTCATCATCTAATT+TGG | - | chr4_1:11203222-11203241 | None:intergenic | 25.0% |
| ! | TGCATCTTATAATGACATTA+TGG | - | chr4_1:11203258-11203277 | None:intergenic | 25.0% |
| ! | TTAAGAGAGTGAAATATACT+AGG | + | chr4_1:11203465-11203484 | Msa0535150:intron | 25.0% |
| ! | TAAGAGAGTGAAATATACTA+GGG | + | chr4_1:11203466-11203485 | Msa0535150:intron | 25.0% |
| ! | AGTTAGGATTAATATCTTTC+AGG | - | chr4_1:11203564-11203583 | None:intergenic | 25.0% |
| ! | GATTTACAACTATCAAAGTT+AGG | - | chr4_1:11203580-11203599 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCTCTCCAAAGTT+TGG | + | chr4_1:11203722-11203741 | Msa0535150:intron | 25.0% |
| ! | GTTAATGTAAAATCAGATCA+AGG | + | chr4_1:11203973-11203992 | Msa0535150:intron | 25.0% |
| ! | AAATAATTTAGTAAGTGTGG+TGG | + | chr4_1:11204043-11204062 | Msa0535150:intron | 25.0% |
| !!! | GTTCAAATTTTTCTAAAGGA+TGG | - | chr4_1:11204190-11204209 | None:intergenic | 25.0% |
| ! | AAAAATTTGAACGAATGGAT+TGG | + | chr4_1:11204198-11204217 | Msa0535150:intron | 25.0% |
| !! | AAAATTTGAACGAATGGATT+GGG | + | chr4_1:11204199-11204218 | Msa0535150:intron | 25.0% |
| !! | AAAATGGATGGGATAAATTT+TGG | - | chr4_1:11204290-11204309 | None:intergenic | 25.0% |
| !! | ATCTTGTAAGTTAGGTTTTA+AGG | - | chr4_1:11204595-11204614 | None:intergenic | 25.0% |
| ! | CCGTGTAAAAGAAATTATAA+GGG | - | chr4_1:11204627-11204646 | None:intergenic | 25.0% |
| !! | CCCTTATAATTTCTTTTACA+CGG | + | chr4_1:11204624-11204643 | Msa0535150:intron | 25.0% |
| ! | ACCGTGTAAAAGAAATTATA+AGG | - | chr4_1:11204628-11204647 | None:intergenic | 25.0% |
| ! | TGAAATCAACAAAACGTATA+CGG | - | chr4_1:11204679-11204698 | None:intergenic | 25.0% |
| !! | ATATCTATGCATCAATTTTG+TGG | + | chr4_1:11204817-11204836 | Msa0535150:intron | 25.0% |
| !! | CCTTAACTTTAAAAGAATTC+AGG | - | chr4_1:11204988-11205007 | None:intergenic | 25.0% |
| !!! | CCTGAATTCTTTTAAAGTTA+AGG | + | chr4_1:11204985-11205004 | Msa0535150:intron | 25.0% |
| ! | GTATAATTGAAGTAAGAATG+AGG | + | chr4_1:11205181-11205200 | Msa0535150:intron | 25.0% |
| ! | TTATGAAAGCAGATTAACTT+AGG | + | chr4_1:11205232-11205251 | Msa0535150:intron | 25.0% |
| !! | TAAACATTTGTGTTACTGTT+TGG | + | chr4_1:11205487-11205506 | Msa0535150:intron | 25.0% |
| !! | AAACATTTGTGTTACTGTTT+GGG | + | chr4_1:11205488-11205507 | Msa0535150:intron | 25.0% |
| !!! | TTAGCTTATTTTCATAAGCT+CGG | + | chr4_1:11205553-11205572 | Msa0535150:intron | 25.0% |
| ! | GTGATAAATGCTTATAAAAC+CGG | + | chr4_1:11205603-11205622 | Msa0535150:intron | 25.0% |
| !! | CTTTTATATAAGCTATAGAC+CGG | - | chr4_1:11205625-11205644 | None:intergenic | 25.0% |
| ! | TTGTCATTAGTCCATTAATT+AGG | - | chr4_1:11205960-11205979 | None:intergenic | 25.0% |
| !! | CTAGTTTAAGTTAAAATGTG+AGG | - | chr4_1:11206173-11206192 | None:intergenic | 25.0% |
| !!! | GTGTTTTATTTCTTTTGTCT+AGG | + | chr4_1:11206222-11206241 | Msa0535150:intron | 25.0% |
| ! | AATAACCAAAAACACTAAAG+AGG | - | chr4_1:11206380-11206399 | None:intergenic | 25.0% |
| !! | TTTCTTTTTCTTCCATATTC+CGG | + | chr4_1:11206439-11206458 | Msa0535150:three_prime_UTR | 25.0% |
| !!! | GATTGGTTTGGATATTAATT+TGG | + | chr4_1:11206542-11206561 | Msa0535150:three_prime_UTR | 25.0% |
| !! | GTTTGGATATTAATTTGGTT+TGG | + | chr4_1:11206547-11206566 | Msa0535150:three_prime_UTR | 25.0% |
| !!! | CTGTTCTGTTCTGTTTTTTT+TGG | - | chr4_1:11198005-11198024 | None:intergenic | 30.0% |
| !!! | ATTCTGTTATTTTGAGAGAG+AGG | - | chr4_1:11198502-11198521 | None:intergenic | 30.0% |
| ! | TTCAAAGAAAGATCTTTTGG+GGG | + | chr4_1:11198686-11198705 | Msa0535150:intron | 30.0% |
| !! | TTTTGTTTGTTTGGTATCTG+AGG | + | chr4_1:11198719-11198738 | Msa0535150:intron | 30.0% |
| TATCTGAGGAAAGAAAATGA+GGG | + | chr4_1:11198733-11198752 | Msa0535150:intron | 30.0% | |
| !!! | AGTTGAAAGTTTTGTTTCAG+TGG | + | chr4_1:11198762-11198781 | Msa0535150:intron | 30.0% |
| ! | AATGCATATGCTAGCTTAAT+TGG | + | chr4_1:11198786-11198805 | Msa0535150:intron | 30.0% |
| !!! | TCTTTTATGATTTTGGCTTC+TGG | + | chr4_1:11198902-11198921 | Msa0535150:intron | 30.0% |
| !! | TCTGGATTTTTGGATTATAC+AGG | + | chr4_1:11198920-11198939 | Msa0535150:intron | 30.0% |
| TGAAAAAATTGAGAGAAAGG+AGG | + | chr4_1:11198959-11198978 | Msa0535150:intron | 30.0% | |
| GAAAAAATTGAGAGAAAGGA+GGG | + | chr4_1:11198960-11198979 | Msa0535150:intron | 30.0% | |
| !! | TGTTGATGATTTATCTGTCA+TGG | + | chr4_1:11199004-11199023 | Msa0535150:intron | 30.0% |
| TTAAAGTGATCAAAAGCAGA+TGG | - | chr4_1:11199262-11199281 | None:intergenic | 30.0% | |
| ! | TGCTTTTGATCACTTTAATC+AGG | + | chr4_1:11199264-11199283 | Msa0535150:intron | 30.0% |
| TTGATCACTTTAATCAGGAT+TGG | + | chr4_1:11199269-11199288 | Msa0535150:intron | 30.0% | |
| TTTGGAAAACGAGAAATGAT+AGG | - | chr4_1:11199803-11199822 | None:intergenic | 30.0% | |
| ! | AATTTGGCACACTTTGATTT+GGG | - | chr4_1:11199829-11199848 | None:intergenic | 30.0% |
| TAATTTGGCACACTTTGATT+TGG | - | chr4_1:11199830-11199849 | None:intergenic | 30.0% | |
| ! | TGATAAGAATTTTCATGAGC+AGG | + | chr4_1:11199937-11199956 | Msa0535150:intron | 30.0% |
| AATGCAAAACTGATAACACA+TGG | - | chr4_1:11199975-11199994 | None:intergenic | 30.0% | |
| ! | GTTATCAGTTTTGCATTCAT+TGG | + | chr4_1:11199978-11199997 | Msa0535150:intron | 30.0% |
| ! | TTCTGCCTTTCTTTTCTTTT+TGG | + | chr4_1:11200036-11200055 | Msa0535150:intron | 30.0% |
| TGCTAATATATGAAGCTTCA+AGG | + | chr4_1:11200198-11200217 | Msa0535150:CDS | 30.0% | |
| GCTAATATATGAAGCTTCAA+GGG | + | chr4_1:11200199-11200218 | Msa0535150:CDS | 30.0% | |
| TATATCTTGTAAATCCCTTG+TGG | + | chr4_1:11200304-11200323 | Msa0535150:intron | 30.0% | |
| TCATAGACTCGAGTAAAATT+AGG | - | chr4_1:11200404-11200423 | None:intergenic | 30.0% | |
| AGCAGAACAAAATAATCAGA+TGG | - | chr4_1:11200716-11200735 | None:intergenic | 30.0% | |
| ! | TTGATTGTCTTATTGATGTG+CGG | + | chr4_1:11201081-11201100 | Msa0535150:intron | 30.0% |
| TCAGGCAATAACTTACAAAA+AGG | - | chr4_1:11201117-11201136 | None:intergenic | 30.0% | |
| !! | AGATGATATGTTTTTGTTGC+AGG | - | chr4_1:11201217-11201236 | None:intergenic | 30.0% |
| GCAACAAAAACATATCATCT+AGG | + | chr4_1:11201217-11201236 | Msa0535150:CDS | 30.0% | |
| TCCAACAAACATGATTTATC+GGG | + | chr4_1:11201275-11201294 | Msa0535150:intron | 30.0% | |
| !! | ACCATTGTTTCTCTTTCTTT+TGG | + | chr4_1:11201646-11201665 | Msa0535150:intron | 30.0% |
| ! | ATATCCCTTGTATGATTTTC+AGG | + | chr4_1:11201710-11201729 | Msa0535150:intron | 30.0% |
| GTAACCTGAAAATCATACAA+GGG | - | chr4_1:11201717-11201736 | None:intergenic | 30.0% | |
| !!! | TTGTATGATTTTCAGGTTAC+CGG | + | chr4_1:11201717-11201736 | Msa0535150:intron | 30.0% |
| CCAAAGAAATTCATATCAGA+TGG | - | chr4_1:11201869-11201888 | None:intergenic | 30.0% | |
| CCATCTGATATGAATTTCTT+TGG | + | chr4_1:11201866-11201885 | Msa0535150:intron | 30.0% | |
| TCTTTGGTATTCATGGAATA+AGG | + | chr4_1:11201882-11201901 | Msa0535150:intron | 30.0% | |
| TAAGGCTTCTATCTATATGT+TGG | + | chr4_1:11201900-11201919 | Msa0535150:intron | 30.0% | |
| AAGGCTTCTATCTATATGTT+GGG | + | chr4_1:11201901-11201920 | Msa0535150:intron | 30.0% | |
| AACTAAATAACATACACGTG+TGG | + | chr4_1:11201948-11201967 | Msa0535150:intron | 30.0% | |
| AAATCAACTTGTAAGATGAG+AGG | + | chr4_1:11202026-11202045 | Msa0535150:intron | 30.0% | |
| ! | ATGTCTTAACTCTTTTGTAG+CGG | + | chr4_1:11202070-11202089 | Msa0535150:intron | 30.0% |
| !!! | ATGGTGGATTGAATGAATTT+TGG | + | chr4_1:11202100-11202119 | Msa0535150:intron | 30.0% |
| !!! | GGATTGAATGAATTTTGGTT+TGG | + | chr4_1:11202105-11202124 | Msa0535150:intron | 30.0% |
| ! | TCTAAAACTAACTGCATGTT+TGG | - | chr4_1:11202290-11202309 | None:intergenic | 30.0% |
| AAACAGATAATCCAACATGT+GGG | - | chr4_1:11202352-11202371 | None:intergenic | 30.0% | |
| AAAACAGATAATCCAACATG+TGG | - | chr4_1:11202353-11202372 | None:intergenic | 30.0% | |
| ! | TGTTTTGCATTCATGTCTTA+TGG | + | chr4_1:11202367-11202386 | Msa0535150:intron | 30.0% |
| ! | GAAGCTTTTGAATCTATGTA+TGG | + | chr4_1:11202530-11202549 | Msa0535150:intron | 30.0% |
| TCGATCCTAATCTAAATCAT+GGG | - | chr4_1:11203346-11203365 | None:intergenic | 30.0% | |
| ATCGATCCTAATCTAAATCA+TGG | - | chr4_1:11203347-11203366 | None:intergenic | 30.0% | |
| GAAGGTGATAAATGATTCAA+TGG | + | chr4_1:11203435-11203454 | Msa0535150:intron | 30.0% | |
| AAGAGAGTGAAATATACTAG+GGG | + | chr4_1:11203467-11203486 | Msa0535150:intron | 30.0% | |
| ! | TAGAGCAACTCTCAATTTTA+TGG | + | chr4_1:11203524-11203543 | Msa0535150:intron | 30.0% |
| ! | AGAGCAACTCTCAATTTTAT+GGG | + | chr4_1:11203525-11203544 | Msa0535150:intron | 30.0% |
| AGGATTAATATCTTTCAGGA+GGG | - | chr4_1:11203560-11203579 | None:intergenic | 30.0% | |
| TAGGATTAATATCTTTCAGG+AGG | - | chr4_1:11203561-11203580 | None:intergenic | 30.0% | |
| ATAGTTGTAAATCACAAGAG+TGG | + | chr4_1:11203587-11203606 | Msa0535150:intron | 30.0% | |
| ! | TGACTGTTTGAGACAATAAA+GGG | + | chr4_1:11203630-11203649 | Msa0535150:intron | 30.0% |
| AGACAATAAAGGGTAGAAAT+TGG | + | chr4_1:11203640-11203659 | Msa0535150:intron | 30.0% | |
| TGCATTGCAATTTCACTAAA+CGG | + | chr4_1:11203827-11203846 | Msa0535150:intron | 30.0% | |
| ATTTCACTAAACGGATCAAT+AGG | + | chr4_1:11203836-11203855 | Msa0535150:intron | 30.0% | |
| GATCACTAAATAAGCAAATG+TGG | + | chr4_1:11204398-11204417 | Msa0535150:intron | 30.0% | |
| ! | TTTCACATGCAAAAGAGTAT+GGG | - | chr4_1:11204463-11204482 | None:intergenic | 30.0% |
| !!! | GGTTTTAAGGATGATAAGTT+AGG | - | chr4_1:11204582-11204601 | None:intergenic | 30.0% |
| AAAACCTAACTTACAAGATG+AGG | + | chr4_1:11204596-11204615 | Msa0535150:intron | 30.0% | |
| AAACCTAACTTACAAGATGA+GGG | + | chr4_1:11204597-11204616 | Msa0535150:intron | 30.0% | |
| ! | TAATTTTTACAACCTTGGAC+TGG | + | chr4_1:11204699-11204718 | Msa0535150:intron | 30.0% |
| !!! | GTAAAATTTTTTCCAGTCCA+AGG | - | chr4_1:11204714-11204733 | None:intergenic | 30.0% |
| ATCAATCAAATCATAATGGC+TGG | + | chr4_1:11204742-11204761 | Msa0535150:intron | 30.0% | |
| TCAATCAAATCATAATGGCT+GGG | + | chr4_1:11204743-11204762 | Msa0535150:intron | 30.0% | |
| !!! | TAGTGGATTGGTTCAAATTT+TGG | + | chr4_1:11204774-11204793 | Msa0535150:intron | 30.0% |
| ! | TGTTATTTATGAATTGCAGG+TGG | + | chr4_1:11204853-11204872 | Msa0535150:intron | 30.0% |
| !! | ACGTTCTTTTAAGAGATTCA+AGG | - | chr4_1:11204893-11204912 | None:intergenic | 30.0% |
| TTGAATCTCTTAAAAGAACG+TGG | + | chr4_1:11204892-11204911 | Msa0535150:CDS | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr4_1:11205055-11205074 | Msa0535150:intron | 30.0% | |
| !!! | TTTTTTTTTTTGGTAGTGGC+CGG | - | chr4_1:11205096-11205115 | None:intergenic | 30.0% |
| ! | ACATTTCTTTTCATGCACTT+TGG | + | chr4_1:11205121-11205140 | Msa0535150:intron | 30.0% |
| ! | CATTTCTTTTCATGCACTTT+GGG | + | chr4_1:11205122-11205141 | Msa0535150:intron | 30.0% |
| TTGTTTCAGCCACAAAATAT+TGG | - | chr4_1:11205843-11205862 | None:intergenic | 30.0% | |
| GGTAATTGATCAAAGAACAA+TGG | - | chr4_1:11205939-11205958 | None:intergenic | 30.0% | |
| TAATATTATGTGACTACCCT+GGG | - | chr4_1:11206042-11206061 | None:intergenic | 30.0% | |
| ATAATATTATGTGACTACCC+TGG | - | chr4_1:11206043-11206062 | None:intergenic | 30.0% | |
| TTGTCTAGGTTTATAATTCC+TGG | + | chr4_1:11206236-11206255 | Msa0535150:intron | 30.0% | |
| AATACATGAATGCTCATTGT+TGG | + | chr4_1:11206294-11206313 | Msa0535150:exon | 30.0% | |
| ACTATCGAAATGATTTAGAC+CGG | - | chr4_1:11206485-11206504 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCACATCCCAAACT+AGG | - | chr4_1:11206612-11206631 | None:intergenic | 30.0% |
| !! | GTTTTGTTATCCTAGGAACT+AGG | - | chr4_1:11198056-11198075 | None:intergenic | 35.0% |
| ATTAATATGGCAGTGAATGC+GGG | - | chr4_1:11198102-11198121 | None:intergenic | 35.0% | |
| GATTAATATGGCAGTGAATG+CGG | - | chr4_1:11198103-11198122 | None:intergenic | 35.0% | |
| !! | TTTGTTGTTGTGAAGAGAGT+AGG | - | chr4_1:11198197-11198216 | None:intergenic | 35.0% |
| TACTCTCTTCACAACAACAA+AGG | + | chr4_1:11198196-11198215 | Msa0535150:CDS | 35.0% | |
| !! | ATTGAAAAAGGGTTCTGAGT+AGG | - | chr4_1:11198418-11198437 | None:intergenic | 35.0% |
| AAAACCCATGAACCAAGAAA+AGG | - | chr4_1:11198554-11198573 | None:intergenic | 35.0% | |
| CATGTCTATGTAAGCATGAT+GGG | + | chr4_1:11198650-11198669 | Msa0535150:intron | 35.0% | |
| GTATCTGAGGAAAGAAAATG+AGG | + | chr4_1:11198732-11198751 | Msa0535150:intron | 35.0% | |
| ATCTGAGGAAAGAAAATGAG+GGG | + | chr4_1:11198734-11198753 | Msa0535150:intron | 35.0% | |
| !!! | GATTTTGGCTTCTGGATTTT+TGG | + | chr4_1:11198910-11198929 | Msa0535150:intron | 35.0% |
| ATGATTTATCTGTCATGGCT+TGG | + | chr4_1:11199009-11199028 | Msa0535150:intron | 35.0% | |
| ! | TTTTGGCACTCACTGAAAAT+AGG | - | chr4_1:11199193-11199212 | None:intergenic | 35.0% |
| AGTGCATCATTGAACAATAG+TGG | - | chr4_1:11199386-11199405 | None:intergenic | 35.0% | |
| !! | ACACTTTGATTTGGGTGATT+TGG | - | chr4_1:11199821-11199840 | None:intergenic | 35.0% |
| ! | AGAAACTCCATAAGCGATTT+TGG | - | chr4_1:11199854-11199873 | None:intergenic | 35.0% |
| ! | TGTTTGTCCATTTGGAATGT+TGG | - | chr4_1:11199896-11199915 | None:intergenic | 35.0% |
| CAACTTCTTAGTTTCACCAA+TGG | + | chr4_1:11200007-11200026 | Msa0535150:intron | 35.0% | |
| TATATGAAGCTTCAAGGGAT+TGG | + | chr4_1:11200204-11200223 | Msa0535150:CDS | 35.0% | |
| AAAATTCCTGAACAGACTAG+TGG | - | chr4_1:11200429-11200448 | None:intergenic | 35.0% | |
| CATAAATGATCCAAAACTGG+AGG | + | chr4_1:11200615-11200634 | Msa0535150:intron | 35.0% | |
| !! | TTAAGCTTTAAGCTTGCTTG+TGG | + | chr4_1:11200649-11200668 | Msa0535150:intron | 35.0% |
| GCACATCAATAAGACAATCA+AGG | - | chr4_1:11201082-11201101 | None:intergenic | 35.0% | |
| !! | CATGTATTGTACTAGTTCTG+AGG | + | chr4_1:11201248-11201267 | Msa0535150:CDS | 35.0% |
| TCCCGATAAATCATGTTTGT+TGG | - | chr4_1:11201279-11201298 | None:intergenic | 35.0% | |
| GATGCACATCTATGAAAGTA+GGG | + | chr4_1:11201400-11201419 | Msa0535150:intron | 35.0% | |
| ACTAGAAGTGAAAGGAGAAA+AGG | - | chr4_1:11201593-11201612 | None:intergenic | 35.0% | |
| TTCTCCTTTCACTTCTAGTA+TGG | + | chr4_1:11201594-11201613 | Msa0535150:intron | 35.0% | |
| TAAGCCATACTAGAAGTGAA+AGG | - | chr4_1:11201601-11201620 | None:intergenic | 35.0% | |
| GCCAAAAGAAAGAGAAACAA+TGG | - | chr4_1:11201650-11201669 | None:intergenic | 35.0% | |
| GGTAACCTGAAAATCATACA+AGG | - | chr4_1:11201718-11201737 | None:intergenic | 35.0% | |
| ! | AGAAGGGTCTAAAGTATTTG+TGG | + | chr4_1:11201750-11201769 | Msa0535150:CDS | 35.0% |
| GGAAAAAGAATTAAAAGGCC+CGG | - | chr4_1:11201848-11201867 | None:intergenic | 35.0% | |
| TGGATATCCAATTCATCTGT+TGG | + | chr4_1:11202215-11202234 | Msa0535150:intron | 35.0% | |
| AGATACACCAACAGATGAAT+TGG | - | chr4_1:11202225-11202244 | None:intergenic | 35.0% | |
| TTCATCTGTTGGTGTATCTT+TGG | + | chr4_1:11202226-11202245 | Msa0535150:intron | 35.0% | |
| TGTTGGTGTATCTTTGGTAT+TGG | + | chr4_1:11202232-11202251 | Msa0535150:intron | 35.0% | |
| GTTGGTGTATCTTTGGTATT+GGG | + | chr4_1:11202233-11202252 | Msa0535150:intron | 35.0% | |
| AACAGATAATCCAACATGTG+GGG | - | chr4_1:11202351-11202370 | None:intergenic | 35.0% | |
| ! | TGTGTTGCTAGAGTAAAAAG+TGG | + | chr4_1:11202796-11202815 | Msa0535150:intron | 35.0% |
| AAAGTGGTGACATCATCAAA+TGG | + | chr4_1:11202812-11202831 | Msa0535150:intron | 35.0% | |
| TAATGTAGAACTCCGTCTTA+TGG | + | chr4_1:11202985-11203004 | Msa0535150:intron | 35.0% | |
| AATGTAGAACTCCGTCTTAT+GGG | + | chr4_1:11202986-11203005 | Msa0535150:intron | 35.0% | |
| CTTCTTCAACATGTCTATCA+CGG | - | chr4_1:11203321-11203340 | None:intergenic | 35.0% | |
| AAGCACCCATGATTTAGATT+AGG | + | chr4_1:11203338-11203357 | Msa0535150:intron | 35.0% | |
| AGATTAGGATCGATAACACA+TGG | + | chr4_1:11203353-11203372 | Msa0535150:intron | 35.0% | |
| ! | ATGGAGTGTATTTTCGTGTT+AGG | + | chr4_1:11203372-11203391 | Msa0535150:intron | 35.0% |
| ! | TATTTTCGTGTTAGGCATGT+GGG | + | chr4_1:11203380-11203399 | Msa0535150:intron | 35.0% |
| ! | CTGACTGTTTGAGACAATAA+AGG | + | chr4_1:11203629-11203648 | Msa0535150:intron | 35.0% |
| GGATAACATAAAAGTTGCGA+TGG | + | chr4_1:11203661-11203680 | Msa0535150:intron | 35.0% | |
| AGGGAATTACAATGCCAAAT+TGG | + | chr4_1:11203993-11204012 | Msa0535150:intron | 35.0% | |
| CTAGTCATATCAATCCATCT+AGG | - | chr4_1:11204319-11204338 | None:intergenic | 35.0% | |
| CACTAAATAAGCAAATGTGG+TGG | + | chr4_1:11204401-11204420 | Msa0535150:intron | 35.0% | |
| GTTTCACATGCAAAAGAGTA+TGG | - | chr4_1:11204464-11204483 | None:intergenic | 35.0% | |
| ! | ACTCTTTTGCATGTGAAACT+TGG | + | chr4_1:11204465-11204484 | Msa0535150:intron | 35.0% |
| TTGTAACACTCAACGCTATT+AGG | + | chr4_1:11204505-11204524 | Msa0535150:intron | 35.0% | |
| GGTGTGTAACTAATACAGAT+AGG | + | chr4_1:11204531-11204550 | Msa0535150:intron | 35.0% | |
| CTGATTCCAGTTTCTGAATT+AGG | + | chr4_1:11204556-11204575 | Msa0535150:intron | 35.0% | |
| AACCTAACTTACAAGATGAG+GGG | + | chr4_1:11204598-11204617 | Msa0535150:intron | 35.0% | |
| ! | GCATCAATTTTGTGGTACTA+TGG | + | chr4_1:11204825-11204844 | Msa0535150:intron | 35.0% |
| TGGTAACAAGCAGATTAAAG+TGG | + | chr4_1:11204918-11204937 | Msa0535150:CDS | 35.0% | |
| ACAAGCAGATTAAAGTGGTA+AGG | + | chr4_1:11204923-11204942 | Msa0535150:intron | 35.0% | |
| TGCATAATATATGCAAGGTC+CGG | + | chr4_1:11205060-11205079 | Msa0535150:intron | 35.0% | |
| !!! | TTTTTTTTTTGGTAGTGGCC+GGG | - | chr4_1:11205095-11205114 | None:intergenic | 35.0% |
| TTTCATAAGCTCAACCCAAA+CGG | - | chr4_1:11205260-11205279 | None:intergenic | 35.0% | |
| ACATAGTCATTGCAAGACTT+CGG | - | chr4_1:11205757-11205776 | None:intergenic | 35.0% | |
| AGGGTAATGCATAACAAACT+TGG | - | chr4_1:11205783-11205802 | None:intergenic | 35.0% | |
| ! | TAACAAACATGTGATGGTGA+TGG | - | chr4_1:11205882-11205901 | None:intergenic | 35.0% |
| CATGAGTAACAAACATGTGA+TGG | - | chr4_1:11205888-11205907 | None:intergenic | 35.0% | |
| ! | AGTTGCCTCTTTAGTGTTTT+TGG | + | chr4_1:11206372-11206391 | Msa0535150:three_prime_UTR | 35.0% |
| AAATCAAACTGACCGGAATA+TGG | - | chr4_1:11206454-11206473 | None:intergenic | 35.0% | |
| ATATTCCGGTCAGTTTGATT+TGG | + | chr4_1:11206453-11206472 | Msa0535150:three_prime_UTR | 35.0% | |
| ACAATGAACTAAGTTTCCGA+TGG | - | chr4_1:11206512-11206531 | None:intergenic | 35.0% | |
| TCATTGTGAAGAGAACAGAT+TGG | + | chr4_1:11206525-11206544 | Msa0535150:three_prime_UTR | 35.0% | |
| AAATCGCATGTGTTCGAATT+TGG | + | chr4_1:11206584-11206603 | Msa0535150:three_prime_UTR | 35.0% | |
| TGTTATCCTAGGAACTAGGT+AGG | - | chr4_1:11198052-11198071 | None:intergenic | 40.0% | |
| ACGGGAAAGGGAGATTAATA+TGG | - | chr4_1:11198115-11198134 | None:intergenic | 40.0% | |
| TGAGATGAGAACTGAATACG+CGG | - | chr4_1:11198146-11198165 | None:intergenic | 40.0% | |
| AGGAGAAGAAGTAGGAAGAA+GGG | - | chr4_1:11198177-11198196 | None:intergenic | 40.0% | |
| TAGGAGAAGAAGTAGGAAGA+AGG | - | chr4_1:11198178-11198197 | None:intergenic | 40.0% | |
| AAGAGAGTAGGAGAAGAAGT+AGG | - | chr4_1:11198185-11198204 | None:intergenic | 40.0% | |
| GGCGCTTAGCAATTGAAAAA+GGG | - | chr4_1:11198429-11198448 | None:intergenic | 40.0% | |
| AGTGAAGTCTCAGATGACAA+TGG | + | chr4_1:11198468-11198487 | Msa0535150:CDS | 40.0% | |
| GCATGTCTATGTAAGCATGA+TGG | + | chr4_1:11198649-11198668 | Msa0535150:intron | 40.0% | |
| !!! | GTAAGCATGATGGGTTGTTT+TGG | + | chr4_1:11198659-11198678 | Msa0535150:intron | 40.0% |
| !! | AGATCTTTTGGGGGTTTATG+AGG | + | chr4_1:11198695-11198714 | Msa0535150:intron | 40.0% |
| CCAGTGTTTGATCAAAGGAT+GGG | - | chr4_1:11199137-11199156 | None:intergenic | 40.0% | |
| CCATCCTTTGATCAAACACT+GGG | + | chr4_1:11199135-11199154 | Msa0535150:CDS | 40.0% | |
| GAAACCCAGTGTTTGATCAA+AGG | - | chr4_1:11199142-11199161 | None:intergenic | 40.0% | |
| CACTCACTGAAAATAGGACA+GGG | - | chr4_1:11199187-11199206 | None:intergenic | 40.0% | |
| !! | TTGCGATCTGTTGATTCAGT+AGG | + | chr4_1:11199498-11199517 | Msa0535150:intron | 40.0% |
| ! | TCCATTTGGAATGTTGGAGT+GGG | - | chr4_1:11199890-11199909 | None:intergenic | 40.0% |
| !!! | ATCCAAAACTGGAGGTGTTT+TGG | + | chr4_1:11200623-11200642 | Msa0535150:intron | 40.0% |
| ! | AACCAAAACACCTCCAGTTT+TGG | - | chr4_1:11200628-11200647 | None:intergenic | 40.0% |
| ! | TTTAAGCTTGCTTGTGGTAG+TGG | + | chr4_1:11200655-11200674 | Msa0535150:intron | 40.0% |
| AGTGGAGTTCATTGATCCAA+GGG | + | chr4_1:11200846-11200865 | Msa0535150:CDS | 40.0% | |
| GTAATTCCAATCTTGAGAGC+TGG | + | chr4_1:11201157-11201176 | Msa0535150:CDS | 40.0% | |
| GGATGCACATCTATGAAAGT+AGG | + | chr4_1:11201399-11201418 | Msa0535150:intron | 40.0% | |
| ATGAAAGTAGGGTACGCTTT+CGG | + | chr4_1:11201411-11201430 | Msa0535150:intron | 40.0% | |
| TACATACCTGTTGCAAGCAT+AGG | - | chr4_1:11201781-11201800 | None:intergenic | 40.0% | |
| TCATGCGTATTCATTAACGC+CGG | + | chr4_1:11201826-11201845 | Msa0535150:intron | 40.0% | |
| ! | TCTTAACTCTTTTGTAGCGG+TGG | + | chr4_1:11202073-11202092 | Msa0535150:intron | 40.0% |
| ! | CTTTTGTAGCGGTGGAAAAA+TGG | + | chr4_1:11202081-11202100 | Msa0535150:intron | 40.0% |
| ! | GTATTTTCGTGTTAGGCATG+TGG | + | chr4_1:11203379-11203398 | Msa0535150:intron | 40.0% |
| ! | TTAGTAAGTGTGGTGGAACA+AGG | + | chr4_1:11204050-11204069 | Msa0535150:intron | 40.0% |
| GTCAATTAGGGGTAAATCGA+GGG | + | chr4_1:11204117-11204136 | Msa0535150:intron | 40.0% | |
| TCCATTCCACCTGTTAGTTA+TGG | - | chr4_1:11204164-11204183 | None:intergenic | 40.0% | |
| !! | ATTTGAACGAATGGATTGGG+TGG | + | chr4_1:11204202-11204221 | Msa0535150:intron | 40.0% |
| CATATCAATCCATCTAGGAG+TGG | - | chr4_1:11204314-11204333 | None:intergenic | 40.0% | |
| GTTAGGCCTAATTCAGAAAC+TGG | - | chr4_1:11204565-11204584 | None:intergenic | 40.0% | |
| AATCATAATGGCTGGGAAGT+TGG | + | chr4_1:11204750-11204769 | Msa0535150:intron | 40.0% | |
| AATTGCAGGTGGTACTATAG+TGG | + | chr4_1:11204864-11204883 | Msa0535150:intron | 40.0% | |
| CTCTTAAAAGAACGTGGAGT+TGG | + | chr4_1:11204898-11204917 | Msa0535150:CDS | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | + | chr4_1:11205061-11205080 | Msa0535150:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | + | chr4_1:11205062-11205081 | Msa0535150:intron | 40.0% | |
| !!! | TTTTTTTTTGGTAGTGGCCG+GGG | - | chr4_1:11205094-11205113 | None:intergenic | 40.0% |
| AGATTAACTTAGGTCCCGTT+TGG | + | chr4_1:11205242-11205261 | Msa0535150:intron | 40.0% | |
| GATTAACTTAGGTCCCGTTT+GGG | + | chr4_1:11205243-11205262 | Msa0535150:intron | 40.0% | |
| TTCATAAGCTCAACCCAAAC+GGG | - | chr4_1:11205259-11205278 | None:intergenic | 40.0% | |
| CTAAGATAAGCCAATCCAAG+CGG | + | chr4_1:11205437-11205456 | Msa0535150:intron | 40.0% | |
| TAAGATAAGCCAATCCAAGC+GGG | + | chr4_1:11205438-11205457 | Msa0535150:intron | 40.0% | |
| ATCCCGTTCTTAATGACCAA+GGG | + | chr4_1:11206141-11206160 | Msa0535150:CDS | 40.0% | |
| AACCCTTGGTCATTAAGAAC+GGG | - | chr4_1:11206146-11206165 | None:intergenic | 40.0% | |
| CAACCCTTGGTCATTAAGAA+CGG | - | chr4_1:11206147-11206166 | None:intergenic | 40.0% | |
| AGGTTTATAATTCCTGGCCT+TGG | + | chr4_1:11206242-11206261 | Msa0535150:intron | 40.0% | |
| GACTACCAAATCAAACTGAC+CGG | - | chr4_1:11206461-11206480 | None:intergenic | 40.0% | |
| !! | CAGTTTGATTTGGTAGTCAC+CGG | + | chr4_1:11206463-11206482 | Msa0535150:three_prime_UTR | 40.0% |
| CATTTCGATAGTCTGACCAT+CGG | + | chr4_1:11206493-11206512 | Msa0535150:three_prime_UTR | 40.0% | |
| ! | GTGAAGAGAACAGATTGGTT+TGG | + | chr4_1:11206530-11206549 | Msa0535150:three_prime_UTR | 40.0% |
| TTCGAATTTGGCACCTAGTT+TGG | + | chr4_1:11206596-11206615 | Msa0535150:three_prime_UTR | 40.0% | |
| TCGAATTTGGCACCTAGTTT+GGG | + | chr4_1:11206597-11206616 | Msa0535150:three_prime_UTR | 40.0% | |
| GAACTTCCTACCTAGTTCCT+AGG | + | chr4_1:11198043-11198062 | Msa0535150:five_prime_UTR | 45.0% | |
| CGGCGCTTAGCAATTGAAAA+AGG | - | chr4_1:11198430-11198449 | None:intergenic | 45.0% | |
| ! | ACTACTCTCCTGCCTTTTCT+TGG | + | chr4_1:11198539-11198558 | Msa0535150:intron | 45.0% |
| ! | TCCTGCCTTTTCTTGGTTCA+TGG | + | chr4_1:11198546-11198565 | Msa0535150:intron | 45.0% |
| ! | CCTGCCTTTTCTTGGTTCAT+GGG | + | chr4_1:11198547-11198566 | Msa0535150:intron | 45.0% |
| TGTTTGATCAAAGGATGGGC+AGG | - | chr4_1:11199133-11199152 | None:intergenic | 45.0% | |
| CCCATCCTTTGATCAAACAC+TGG | + | chr4_1:11199134-11199153 | Msa0535150:CDS | 45.0% | |
| CCCAGTGTTTGATCAAAGGA+TGG | - | chr4_1:11199138-11199157 | None:intergenic | 45.0% | |
| AACACTGGGTTTCTGTACTG+AGG | + | chr4_1:11199149-11199168 | Msa0535150:CDS | 45.0% | |
| GCACTCACTGAAAATAGGAC+AGG | - | chr4_1:11199188-11199207 | None:intergenic | 45.0% | |
| AGTACTGCTATAGTGCGAAG+AGG | + | chr4_1:11199440-11199459 | Msa0535150:intron | 45.0% | |
| ! | CCATTTGGAATGTTGGAGTG+GGG | - | chr4_1:11199889-11199908 | None:intergenic | 45.0% |
| ! | GTCCATTTGGAATGTTGGAG+TGG | - | chr4_1:11199891-11199910 | None:intergenic | 45.0% |
| AAAGGCAGAATGAGTGCCAT+TGG | - | chr4_1:11200026-11200045 | None:intergenic | 45.0% | |
| AGGAAATGCAATGGCTGAGT+TGG | + | chr4_1:11200169-11200188 | Msa0535150:intron | 45.0% | |
| GGAAATGCAATGGCTGAGTT+GGG | + | chr4_1:11200170-11200189 | Msa0535150:intron | 45.0% | |
| ! | TGAAGCTTCAAGGGATTGGT+TGG | + | chr4_1:11200208-11200227 | Msa0535150:CDS | 45.0% |
| ! | ATGACACCACTAGTCTGTTC+AGG | + | chr4_1:11200420-11200439 | Msa0535150:intron | 45.0% |
| ! | TGTTTTCAGCCAACTGTGTC+TGG | + | chr4_1:11200793-11200812 | Msa0535150:intron | 45.0% |
| TGTATCTCTCCAGACACAGT+TGG | - | chr4_1:11200805-11200824 | None:intergenic | 45.0% | |
| TGGATCAATGAACTCCACTG+AGG | - | chr4_1:11200845-11200864 | None:intergenic | 45.0% | |
| CAGTGGAGTTCATTGATCCA+AGG | + | chr4_1:11200845-11200864 | Msa0535150:CDS | 45.0% | |
| AGTATGGTACTAACAGCCAC+AGG | - | chr4_1:11200874-11200893 | None:intergenic | 45.0% | |
| AACGGGACTCAAGCATTCAA+TGG | - | chr4_1:11201678-11201697 | None:intergenic | 45.0% | |
| TTACCGGACAAGTTTGCAGA+AGG | + | chr4_1:11201733-11201752 | Msa0535150:CDS | 45.0% | |
| TACCGGACAAGTTTGCAGAA+GGG | + | chr4_1:11201734-11201753 | Msa0535150:CDS | 45.0% | |
| GTTGATCCTATGCTTGCAAC+AGG | + | chr4_1:11201772-11201791 | Msa0535150:CDS | 45.0% | |
| CATGCGTATTCATTAACGCC+GGG | + | chr4_1:11201827-11201846 | Msa0535150:intron | 45.0% | |
| TTGTAGCGGTGGAAAAATGG+TGG | + | chr4_1:11202084-11202103 | Msa0535150:intron | 45.0% | |
| ATGATGCCTCACTATGACTC+TGG | - | chr4_1:11202263-11202282 | None:intergenic | 45.0% | |
| TCCAACATGTGGGGCATATT+GGG | - | chr4_1:11202342-11202361 | None:intergenic | 45.0% | |
| ATCCAACATGTGGGGCATAT+TGG | - | chr4_1:11202343-11202362 | None:intergenic | 45.0% | |
| GTCACAATGTGCCCATAAGA+CGG | - | chr4_1:11203000-11203019 | None:intergenic | 45.0% | |
| GATTGTTCACGCGTGTTTGA+AGG | + | chr4_1:11203417-11203436 | Msa0535150:intron | 45.0% | |
| GTCCGAACTGAGGTCAATTA+GGG | + | chr4_1:11204105-11204124 | Msa0535150:intron | 45.0% | |
| TCCGAACTGAGGTCAATTAG+GGG | + | chr4_1:11204106-11204125 | Msa0535150:intron | 45.0% | |
| ACCCCTAATTGACCTCAGTT+CGG | - | chr4_1:11204110-11204129 | None:intergenic | 45.0% | |
| GGTCAATTAGGGGTAAATCG+AGG | + | chr4_1:11204116-11204135 | Msa0535150:intron | 45.0% | |
| GCCATAACTAACAGGTGGAA+TGG | + | chr4_1:11204160-11204179 | Msa0535150:intron | 45.0% | |
| CTAGGAGTGGCAAAATGGAT+GGG | - | chr4_1:11204301-11204320 | None:intergenic | 45.0% | |
| TCTAGGAGTGGCAAAATGGA+TGG | - | chr4_1:11204302-11204321 | None:intergenic | 45.0% | |
| ! | TCCATTTTGCCACTCCTAGA+TGG | + | chr4_1:11204302-11204321 | Msa0535150:intron | 45.0% |
| TCCATCTAGGAGTGGCAAAA+TGG | - | chr4_1:11204306-11204325 | None:intergenic | 45.0% | |
| ACACTCAACGCTATTAGGCT+AGG | + | chr4_1:11204510-11204529 | Msa0535150:intron | 45.0% | |
| CACCCCTCATCTTGTAAGTT+AGG | - | chr4_1:11204603-11204622 | None:intergenic | 45.0% | |
| TACACGGTCTCTGTTCAATG+TGG | + | chr4_1:11204640-11204659 | Msa0535150:intron | 45.0% | |
| ACACGGTCTCTGTTCAATGT+GGG | + | chr4_1:11204641-11204660 | Msa0535150:intron | 45.0% | |
| ! | TGGGAAGTTGGTTAGTGGAT+TGG | + | chr4_1:11204762-11204781 | Msa0535150:intron | 45.0% |
| TGAGCTTAGCTCAGTTGGTT+TGG | + | chr4_1:11205033-11205052 | Msa0535150:intron | 45.0% | |
| TACCATGCACGATGTGGATA+GGG | - | chr4_1:11205802-11205821 | None:intergenic | 45.0% | |
| ATACCATGCACGATGTGGAT+AGG | - | chr4_1:11205803-11205822 | None:intergenic | 45.0% | |
| ACATCATACCATGCACGATG+TGG | - | chr4_1:11205808-11205827 | None:intergenic | 45.0% | |
| !! | TCGCTTAGCTTTTCAAGAGC+CGG | - | chr4_1:11206013-11206032 | None:intergenic | 45.0% |
| TGCAGGCTTCATGTGTATAC+TGG | + | chr4_1:11206110-11206129 | Msa0535150:intron | 45.0% | |
| GATCCCGTTCTTAATGACCA+AGG | + | chr4_1:11206140-11206159 | Msa0535150:CDS | 45.0% | |
| CGTTCTTAATGACCAAGGGT+TGG | + | chr4_1:11206145-11206164 | Msa0535150:intron | 45.0% | |
| !!! | ATTTTTTTATTATTTTTCTT+AGG | - | chr4_1:11198604-11198623 | None:intergenic | 5.0% |
| !! | TAAGTTAAATAATAAATAAT+GGG | - | chr4_1:11200066-11200085 | None:intergenic | 5.0% |
| !! | TTAAGTTAAATAATAAATAA+TGG | - | chr4_1:11200067-11200086 | None:intergenic | 5.0% |
| !!! | AATGTTTTTTTTTTTTTTTT+TGG | - | chr4_1:11205106-11205125 | None:intergenic | 5.0% |
| GAACTGAATACGCGGTGCAT+CGG | - | chr4_1:11198138-11198157 | None:intergenic | 50.0% | |
| ! | CTGCTCCAAAGTTGCTGCTT+CGG | - | chr4_1:11198450-11198469 | None:intergenic | 50.0% |
| CCCATGAACCAAGAAAAGGC+AGG | - | chr4_1:11198550-11198569 | None:intergenic | 50.0% | |
| ! | TTTGGAATGTTGGAGTGGGG+AGG | - | chr4_1:11199886-11199905 | None:intergenic | 50.0% |
| CCCCACTCCAACATTCCAAA+TGG | + | chr4_1:11199886-11199905 | Msa0535150:intron | 50.0% | |
| ! | ATGCAATGGCTGAGTTGGGA+AGG | + | chr4_1:11200174-11200193 | Msa0535150:CDS | 50.0% |
| TGGAGAGATACAATCACCGC+TGG | + | chr4_1:11200813-11200832 | Msa0535150:CDS | 50.0% | |
| GGAGAGATACAATCACCGCT+GGG | + | chr4_1:11200814-11200833 | Msa0535150:CDS | 50.0% | |
| GCAAGACCAGCTCTCAAGAT+TGG | - | chr4_1:11201166-11201185 | None:intergenic | 50.0% | |
| GACCCTTCTGCAAACTTGTC+CGG | - | chr4_1:11201739-11201758 | None:intergenic | 50.0% | |
| GGTTTGCCAGAGTCATAGTG+AGG | + | chr4_1:11202254-11202273 | Msa0535150:intron | 50.0% | |
| CAACATGTGGGGCATATTGG+GGG | - | chr4_1:11202340-11202359 | None:intergenic | 50.0% | |
| CCAACATGTGGGGCATATTG+GGG | - | chr4_1:11202341-11202360 | None:intergenic | 50.0% | |
| AACAGAGAAGGTCCGAACTG+AGG | + | chr4_1:11204095-11204114 | Msa0535150:intron | 50.0% | |
| GGTCCGAACTGAGGTCAATT+AGG | + | chr4_1:11204104-11204123 | Msa0535150:intron | 50.0% | |
| CACAGCGAGCCATAACTAAC+AGG | + | chr4_1:11204152-11204171 | Msa0535150:intron | 50.0% | |
| AGCGAGCCATAACTAACAGG+TGG | + | chr4_1:11204155-11204174 | Msa0535150:intron | 50.0% | |
| ! | ATGGCTGGGAAGTTGGTTAG+TGG | + | chr4_1:11204757-11204776 | Msa0535150:intron | 50.0% |
| CCAACTGAGCTAAGCTCATG+AGG | - | chr4_1:11205031-11205050 | None:intergenic | 50.0% | |
| CCTCATGAGCTTAGCTCAGT+TGG | + | chr4_1:11205028-11205047 | Msa0535150:intron | 50.0% | |
| CATGCACTTTGGGTGTGATC+AGG | + | chr4_1:11205132-11205151 | Msa0535150:intron | 50.0% | |
| AAATAAGGGCCCGCTTGGAT+TGG | - | chr4_1:11205450-11205469 | None:intergenic | 50.0% | |
| AACTCAAATAAGGGCCCGCT+TGG | - | chr4_1:11205455-11205474 | None:intergenic | 50.0% | |
| TACCCTATCCACATCGTGCA+TGG | + | chr4_1:11205797-11205816 | Msa0535150:intron | 50.0% | |
| ATCTGCTTGCTCTTCACCTC+CGG | + | chr4_1:11205991-11206010 | Msa0535150:CDS | 50.0% | |
| !! | CTTAGCTTTTCAAGAGCCGG+AGG | - | chr4_1:11206010-11206029 | None:intergenic | 50.0% |
| ! | AAATGTGAGGCACCAACCCT+TGG | - | chr4_1:11206160-11206179 | None:intergenic | 50.0% |
| TGAATACGCGGTGCATCGGA+CGG | - | chr4_1:11198134-11198153 | None:intergenic | 55.0% | |
| !! | AAGCGCCGAAGCAGCAACTT+TGG | + | chr4_1:11198442-11198461 | Msa0535150:CDS | 55.0% |
| CATTGATCCAAGGGAGCCTG+TGG | + | chr4_1:11200855-11200874 | Msa0535150:CDS | 55.0% | |
| CATATTGGGGGCGAATCGAG+TGG | - | chr4_1:11202328-11202347 | None:intergenic | 55.0% | |
| CCCCAATATGCCCCACATGT+TGG | + | chr4_1:11202338-11202357 | Msa0535150:intron | 55.0% | |
| AACAAGGCCCACTGAGAAGC+TGG | + | chr4_1:11204066-11204085 | Msa0535150:intron | 55.0% | |
| ACAAGGCCCACTGAGAAGCT+GGG | + | chr4_1:11204067-11204086 | Msa0535150:intron | 55.0% | |
| TCTCTCCCCAGCTTCTCAGT+GGG | - | chr4_1:11204076-11204095 | None:intergenic | 55.0% | |
| TTCTCTCCCCAGCTTCTCAG+TGG | - | chr4_1:11204077-11204096 | None:intergenic | 55.0% | |
| AGCTGGGGAGAGAACAGAGA+AGG | + | chr4_1:11204083-11204102 | Msa0535150:intron | 55.0% | |
| AGGGGTAAATCGAGGGAGAG+TGG | + | chr4_1:11204124-11204143 | Msa0535150:intron | 55.0% | |
| GGGGTAAATCGAGGGAGAGT+GGG | + | chr4_1:11204125-11204144 | Msa0535150:intron | 55.0% | |
| AAGCTAAGCGAGCAGTTCCC+AGG | + | chr4_1:11206022-11206041 | Msa0535150:CDS | 55.0% | |
| AGCTAAGCGAGCAGTTCCCA+GGG | + | chr4_1:11206023-11206042 | Msa0535150:CDS | 55.0% | |
| !! | ATTCCTGGCCTTGGAGATGC+TGG | + | chr4_1:11206251-11206270 | Msa0535150:CDS | 55.0% |
| GAATACGCGGTGCATCGGAC+GGG | - | chr4_1:11198133-11198152 | None:intergenic | 60.0% | |
| CTAACAGCCACAGGCTCCCT+TGG | - | chr4_1:11200865-11200884 | None:intergenic | 60.0% | |
| GCGAATCGAGTGGAGCATGC+TGG | - | chr4_1:11202318-11202337 | None:intergenic | 60.0% | |
| CAAGGCCCACTGAGAAGCTG+GGG | + | chr4_1:11204068-11204087 | Msa0535150:intron | 60.0% | |
| AAGGTCCGGGGTTCAAACCC+CGG | + | chr4_1:11205074-11205093 | Msa0535150:intron | 60.0% | |
| TGCGATCGCCAGCATCTCCA+AGG | - | chr4_1:11206262-11206281 | None:intergenic | 60.0% | |
| GATGCTGGCGATCGCAGCTA+TGG | + | chr4_1:11206266-11206285 | Msa0535150:CDS | 60.0% | |
| GCGGTGCATCGGACGGGAAA+GGG | - | chr4_1:11198127-11198146 | None:intergenic | 65.0% | |
| TCCACTGAGGCGACTCCCAG+CGG | - | chr4_1:11200832-11200851 | None:intergenic | 65.0% | |
| AGTGGCCGGGGTTTGAACCC+CGG | - | chr4_1:11205082-11205101 | None:intergenic | 65.0% | |
| TCGCCAGCATCTCCAAGGCC+AGG | - | chr4_1:11206257-11206276 | None:intergenic | 65.0% | |
| CGCGGTGCATCGGACGGGAA+AGG | - | chr4_1:11198128-11198147 | None:intergenic | 70.0% | |
| ACCGCTGGGAGTCGCCTCAG+TGG | + | chr4_1:11200828-11200847 | Msa0535150:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 11197996 | 11206642 | 11197996 | ID=Msa0535150;Name=Msa0535150 |
| chr4_1 | mRNA | 11197996 | 11206642 | 11197996 | ID=Msa0535150-mRNA-1;Parent=Msa0535150;Name=Msa0535150-mRNA-1;_AED=0.11;_eAED=0.11;_QI=93|0.9|0.90|1|1|1|11|347|281 |
| chr4_1 | exon | 11197996 | 11198217 | 11197996 | ID=Msa0535150-mRNA-1:exon:3564;Parent=Msa0535150-mRNA-1 |
| chr4_1 | exon | 11198424 | 11198525 | 11198424 | ID=Msa0535150-mRNA-1:exon:3565;Parent=Msa0535150-mRNA-1 |
| chr4_1 | exon | 11199121 | 11199199 | 11199121 | ID=Msa0535150-mRNA-1:exon:3566;Parent=Msa0535150-mRNA-1 |
| chr4_1 | exon | 11200171 | 11200229 | 11200171 | ID=Msa0535150-mRNA-1:exon:3567;Parent=Msa0535150-mRNA-1 |
| chr4_1 | exon | 11200802 | 11200879 | 11200802 | ID=Msa0535150-mRNA-1:exon:3568;Parent=Msa0535150-mRNA-1 |
| chr4_1 | exon | 11201157 | 11201269 | 11201157 | ID=Msa0535150-mRNA-1:exon:3569;Parent=Msa0535150-mRNA-1 |
| chr4_1 | exon | 11201732 | 11201793 | 11201732 | ID=Msa0535150-mRNA-1:exon:3570;Parent=Msa0535150-mRNA-1 |
| chr4_1 | exon | 11204872 | 11204939 | 11204872 | ID=Msa0535150-mRNA-1:exon:3571;Parent=Msa0535150-mRNA-1 |
| chr4_1 | exon | 11205989 | 11206044 | 11205989 | ID=Msa0535150-mRNA-1:exon:3572;Parent=Msa0535150-mRNA-1 |
| chr4_1 | exon | 11206115 | 11206162 | 11206115 | ID=Msa0535150-mRNA-1:exon:3573;Parent=Msa0535150-mRNA-1 |
| chr4_1 | exon | 11206244 | 11206642 | 11206244 | ID=Msa0535150-mRNA-1:exon:3574;Parent=Msa0535150-mRNA-1 |
| chr4_1 | five_prime_UTR | 11197996 | 11198088 | 11197996 | ID=Msa0535150-mRNA-1:five_prime_utr;Parent=Msa0535150-mRNA-1 |
| chr4_1 | CDS | 11198089 | 11198217 | 11198089 | ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1 |
| chr4_1 | CDS | 11198424 | 11198525 | 11198424 | ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1 |
| chr4_1 | CDS | 11199121 | 11199199 | 11199121 | ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1 |
| chr4_1 | CDS | 11200171 | 11200229 | 11200171 | ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1 |
| chr4_1 | CDS | 11200802 | 11200879 | 11200802 | ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1 |
| chr4_1 | CDS | 11201157 | 11201269 | 11201157 | ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1 |
| chr4_1 | CDS | 11201732 | 11201793 | 11201732 | ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1 |
| chr4_1 | CDS | 11204872 | 11204939 | 11204872 | ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1 |
| chr4_1 | CDS | 11205989 | 11206044 | 11205989 | ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1 |
| chr4_1 | CDS | 11206115 | 11206162 | 11206115 | ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1 |
| chr4_1 | CDS | 11206244 | 11206295 | 11206244 | ID=Msa0535150-mRNA-1:cds;Parent=Msa0535150-mRNA-1 |
| chr4_1 | three_prime_UTR | 11206296 | 11206642 | 11206296 | ID=Msa0535150-mRNA-1:three_prime_utr;Parent=Msa0535150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
