AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0589260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589260 MtrunA17_Chr3g0128271 58.639 191 60 4 1 174 1 189 3.59e-66 207
Msa0589260 MtrunA17_Chr3g0128221 37.118 229 88 4 1 174 1 228 8.69e-36 125
Msa0589260 MtrunA17_Chr3g0128211 45.714 140 68 2 40 174 103 239 5.72e-32 116
Msa0589260 MtrunA17_Chr3g0128251 39.865 148 69 3 1 129 1 147 7.35e-24 92.8
Msa0589260 MtrunA17_Chr2g0312431 43.421 76 42 1 46 121 64 138 1.53e-15 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589260 AT4G27585.1 52.564 156 70 3 21 174 33 186 7.65e-49 163
Msa0589260 AT5G54100.1 54.478 134 59 2 41 174 98 229 9.47e-44 149

Find 67 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCAAACCTTCAACGTATA+TGG 0.196415 4_2:-11856090 None:intergenic
TTATTCTCCACAACTACTTT+TGG 0.242500 4_2:+11856311 Msa0589260:CDS
AACGCTCGATGCAAAGATTT+TGG 0.248278 4_2:+11856342 Msa0589260:CDS
CCTAATGATTATACCTTTCA+TGG 0.250289 4_2:+11856400 Msa0589260:three_prime_UTR
CTATGGTGTCGCCTGCTTAA+TGG 0.264755 4_2:-11856503 None:intergenic
CTAGTTGACATTAATATATC+TGG 0.286605 4_2:-11856555 None:intergenic
GCGGAGCTAGATTTGGCTTT+AGG 0.315896 4_2:-11856463 None:intergenic
AAATTACTCCTCCGTTCAAT+TGG 0.344181 4_2:+11855880 Msa0589260:CDS
GTTGAATGACATCATCATAA+AGG 0.353425 4_2:-11856252 None:intergenic
CAACAAGAGGGATCAAATAA+TGG 0.362347 4_2:-11855983 None:intergenic
ATTTATGATATGATATTGTT+TGG 0.371323 4_2:-11855628 None:intergenic
AGGGATCAAATAATGGATTC+CGG 0.377265 4_2:-11855976 None:intergenic
AAGTGCGATTCTCGCTGAAT+TGG 0.379009 4_2:-11855693 None:intergenic
AGCAAACCTTCAACGTATAT+GGG 0.387015 4_2:-11856089 None:intergenic
TCCTGTACTTGCTTCTTATG+AGG 0.398231 4_2:+11856219 Msa0589260:CDS
AATTACTCCTCCGTTCAATT+GGG 0.398483 4_2:+11855881 Msa0589260:CDS
CCATGAAAGGTATAATCATT+AGG 0.406342 4_2:-11856400 None:intergenic
CGACGCCGCCGCCAAGGATT+GGG 0.407366 4_2:-11855726 None:intergenic
TTATGATGATGTCATTCAAC+TGG 0.408703 4_2:+11856255 Msa0589260:CDS
GATCCGAGCGGAGCTAGATT+TGG 0.410833 4_2:-11856470 None:intergenic
GGGATCAAATAATGGATTCC+GGG 0.438866 4_2:-11855975 None:intergenic
ACGACGCCGCCGCCAAGGAT+TGG 0.440800 4_2:-11855727 None:intergenic
TTCTTCACAGCTGTCGAGCC+AGG 0.441291 4_2:+11855762 Msa0589260:CDS
TGAATTGGATTTCAAAATGT+TGG 0.446168 4_2:-11855678 None:intergenic
TGTCGCCTGCTTAATGGACT+CGG 0.450508 4_2:-11856497 None:intergenic
TTGAATGACATCATCATAAA+GGG 0.456161 4_2:-11856251 None:intergenic
AGAGATGCGCTTCATGAGGC+TGG 0.469216 4_2:-11855501 None:intergenic
TCCTTTCCCAAAAGTAGTTG+TGG 0.482236 4_2:-11856318 None:intergenic
TTCCATCACCCAATCCTTGG+CGG 0.493689 4_2:+11855718 Msa0589260:CDS
TGGTTCCATCACCCAATCCT+TGG 0.497489 4_2:+11855715 Msa0589260:CDS
TATGGGGACATTATCCTTAG+TGG 0.504839 4_2:-11856072 None:intergenic
TGAAGAATTAAAATAACAAA+AGG 0.507147 4_2:+11855564 Msa0589260:five_prime_UTR
TAACTAAATGCTACCATGAA+AGG 0.521492 4_2:-11856413 None:intergenic
AATGTCCCCATATACGTTGA+AGG 0.523280 4_2:+11856083 Msa0589260:CDS
ATTACTCCTCCGTTCAATTG+GGG 0.531901 4_2:+11855882 Msa0589260:CDS
GGAGGACGACGCCGCCGCCA+AGG 0.539666 4_2:-11855732 None:intergenic
TGCTCACCTTGCTACCACTA+AGG 0.546637 4_2:+11856058 Msa0589260:CDS
ACCTCATAAGAAGCAAGTAC+AGG 0.549466 4_2:-11856220 None:intergenic
TTAGTGGTAGCAAGGTGAGC+AGG 0.552114 4_2:-11856056 None:intergenic
CCGACCCGAGTCCATTAAGC+AGG 0.562815 4_2:+11856492 Msa0589260:three_prime_UTR
TACTCCTCCGTTCAATTGGG+GGG 0.568985 4_2:+11855884 Msa0589260:CDS
GTCGCCTGCTTAATGGACTC+GGG 0.574205 4_2:-11856496 None:intergenic
CCATGGTACTACTACTACAG+TGG 0.582365 4_2:-11855528 None:intergenic
CATCACCCAATCCTTGGCGG+CGG 0.586028 4_2:+11855721 Msa0589260:CDS
GTGTACATTATTGAGCGATA+CGG 0.586615 4_2:+11855930 Msa0589260:CDS
CTAATATAACTACTGCTGCA+TGG 0.589502 4_2:-11856599 None:intergenic
CATTATCCTTAGTGGTAGCA+AGG 0.589535 4_2:-11856064 None:intergenic
CGCCGCCAAGGATTGGGTGA+TGG 0.591762 4_2:-11855720 None:intergenic
AATGCGTAGTCAAGTCGGTA+AGG 0.593531 4_2:+11856288 Msa0589260:CDS
TTCACCACAGGAGGAATCCA+TGG 0.594068 4_2:-11855545 None:intergenic
TTACTCCTCCGTTCAATTGG+GGG 0.600597 4_2:+11855883 Msa0589260:CDS
ACCGACTTGACTACGCATTG+TGG 0.604609 4_2:-11856284 None:intergenic
TAAGCAATTCTATCAACAAG+AGG 0.607348 4_2:-11855996 None:intergenic
AAGCCAAATCTAGCTCCGCT+CGG 0.616643 4_2:+11856467 Msa0589260:three_prime_UTR
CCTGCTTAATGGACTCGGGT+CGG 0.619339 4_2:-11856492 None:intergenic
AATTCAGCGAGAATCGCACT+TGG 0.625061 4_2:+11855695 Msa0589260:CDS
AGTCAGAGATGCGCTTCATG+AGG 0.629511 4_2:-11855505 None:intergenic
ACCACAATGCGTAGTCAAGT+CGG 0.632581 4_2:+11856283 Msa0589260:CDS
CCACTGTAGTAGTAGTACCA+TGG 0.643588 4_2:+11855528 Msa0589260:five_prime_UTR
AAGCAATTCTATCAACAAGA+GGG 0.648716 4_2:-11855995 None:intergenic
GCAAACCTTCAACGTATATG+GGG 0.650332 4_2:-11856088 None:intergenic
ATCAAATAATGGATTCCGGG+TGG 0.660823 4_2:-11855972 None:intergenic
AGTACCATGGATTCCTCCTG+TGG 0.661686 4_2:+11855541 Msa0589260:five_prime_UTR
ACAGCTGTGAAGAAATCGAA+CGG 0.670521 4_2:-11855753 None:intergenic
TATGTCAAGACTCTTCCACC+CGG 0.699326 4_2:+11855957 Msa0589260:CDS
GCTGTGAAGAAATCGAACGG+AGG 0.752434 4_2:-11855750 None:intergenic
GGACTCGGGTCGGATCCGAG+CGG 0.755684 4_2:-11856482 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAGAATTAAAATAACAAA+AGG + chr4_2:11855564-11855583 Msa0589260:five_prime_UTR 15.0%
!! ATTTATGATATGATATTGTT+TGG - chr4_2:11855631-11855650 None:intergenic 15.0%
!!! ATTGGATTGAATTTTTTATT+AGG + chr4_2:11855850-11855869 Msa0589260:intron 15.0%
!!! TTGGATTGAATTTTTTATTA+GGG + chr4_2:11855851-11855870 Msa0589260:intron 15.0%
!! CACTTCAAAAAAATAAAAAA+AGG - chr4_2:11856131-11856150 None:intergenic 15.0%
!!! CTTTTTTTATTTTTTTGAAG+TGG + chr4_2:11856129-11856148 Msa0589260:intron 15.0%
!! TGAAGAATTAAAATAACAAA+AGG + chr4_2:11855564-11855583 Msa0589260:five_prime_UTR 15.0%
!! ATTTATGATATGATATTGTT+TGG - chr4_2:11855631-11855650 None:intergenic 15.0%
!!! ATTGGATTGAATTTTTTATT+AGG + chr4_2:11855850-11855869 Msa0589260:intron 15.0%
!!! TTGGATTGAATTTTTTATTA+GGG + chr4_2:11855851-11855870 Msa0589260:intron 15.0%
!! CACTTCAAAAAAATAAAAAA+AGG - chr4_2:11856131-11856150 None:intergenic 15.0%
!!! CTTTTTTTATTTTTTTGAAG+TGG + chr4_2:11856129-11856148 Msa0589260:intron 15.0%
!! CAATTTCATTCTCATTAATA+AGG + chr4_2:11855786-11855805 Msa0589260:intron 20.0%
!!! ATTTTTTTGAAGTGGAAAAT+TGG + chr4_2:11856137-11856156 Msa0589260:intron 20.0%
!! CAATTTCATTCTCATTAATA+AGG + chr4_2:11855786-11855805 Msa0589260:intron 20.0%
!!! ATTTTTTTGAAGTGGAAAAT+TGG + chr4_2:11856137-11856156 Msa0589260:intron 20.0%
!!! TTATTTTAATTCTTCACCAC+AGG - chr4_2:11855560-11855579 None:intergenic 25.0%
! TGAATTGGATTTCAAAATGT+TGG - chr4_2:11855681-11855700 None:intergenic 25.0%
! TTGAATGACATCATCATAAA+GGG - chr4_2:11856254-11856273 None:intergenic 25.0%
!!! ACTTCAGTTTTAAGTTGTTT+CGG + chr4_2:11856435-11856454 Msa0589260:three_prime_UTR 25.0%
!!! TTTTCGAGTAAAAAGAACTA+TGG - chr4_2:11856523-11856542 None:intergenic 25.0%
! CTAGTTGACATTAATATATC+TGG - chr4_2:11856558-11856577 None:intergenic 25.0%
!!! TTATTTTAATTCTTCACCAC+AGG - chr4_2:11855560-11855579 None:intergenic 25.0%
! TGAATTGGATTTCAAAATGT+TGG - chr4_2:11855681-11855700 None:intergenic 25.0%
! TTGAATGACATCATCATAAA+GGG - chr4_2:11856254-11856273 None:intergenic 25.0%
!!! ACTTCAGTTTTAAGTTGTTT+CGG + chr4_2:11856435-11856454 Msa0589260:three_prime_UTR 25.0%
!!! TTTTCGAGTAAAAAGAACTA+TGG - chr4_2:11856523-11856542 None:intergenic 25.0%
! CTAGTTGACATTAATATATC+TGG - chr4_2:11856558-11856577 None:intergenic 25.0%
TAATGAGAATGAAATTGACC+TGG - chr4_2:11855783-11855802 None:intergenic 30.0%
AAGCAATTCTATCAACAAGA+GGG - chr4_2:11855998-11856017 None:intergenic 30.0%
TAAGCAATTCTATCAACAAG+AGG - chr4_2:11855999-11856018 None:intergenic 30.0%
!!! TGAAGGTTTGCTTTTTTTTG+AGG + chr4_2:11856100-11856119 Msa0589260:CDS 30.0%
GTTGAATGACATCATCATAA+AGG - chr4_2:11856255-11856274 None:intergenic 30.0%
! TTATGATGATGTCATTCAAC+TGG + chr4_2:11856255-11856274 Msa0589260:CDS 30.0%
! TTATTCTCCACAACTACTTT+TGG + chr4_2:11856311-11856330 Msa0589260:CDS 30.0%
!! TATTCTCCACAACTACTTTT+GGG + chr4_2:11856312-11856331 Msa0589260:CDS 30.0%
! CCATGAAAGGTATAATCATT+AGG - chr4_2:11856403-11856422 None:intergenic 30.0%
CCTAATGATTATACCTTTCA+TGG + chr4_2:11856400-11856419 Msa0589260:three_prime_UTR 30.0%
TAACTAAATGCTACCATGAA+AGG - chr4_2:11856416-11856435 None:intergenic 30.0%
TAATGAGAATGAAATTGACC+TGG - chr4_2:11855783-11855802 None:intergenic 30.0%
AAGCAATTCTATCAACAAGA+GGG - chr4_2:11855998-11856017 None:intergenic 30.0%
TAAGCAATTCTATCAACAAG+AGG - chr4_2:11855999-11856018 None:intergenic 30.0%
!!! TGAAGGTTTGCTTTTTTTTG+AGG + chr4_2:11856100-11856119 Msa0589260:CDS 30.0%
GTTGAATGACATCATCATAA+AGG - chr4_2:11856255-11856274 None:intergenic 30.0%
! TTATGATGATGTCATTCAAC+TGG + chr4_2:11856255-11856274 Msa0589260:CDS 30.0%
! TTATTCTCCACAACTACTTT+TGG + chr4_2:11856311-11856330 Msa0589260:CDS 30.0%
!! TATTCTCCACAACTACTTTT+GGG + chr4_2:11856312-11856331 Msa0589260:CDS 30.0%
! CCATGAAAGGTATAATCATT+AGG - chr4_2:11856403-11856422 None:intergenic 30.0%
CCTAATGATTATACCTTTCA+TGG + chr4_2:11856400-11856419 Msa0589260:three_prime_UTR 30.0%
TAACTAAATGCTACCATGAA+AGG - chr4_2:11856416-11856435 None:intergenic 30.0%
!! TTTTAATTCTTCACCACAGG+AGG - chr4_2:11855557-11855576 None:intergenic 35.0%
AAATTACTCCTCCGTTCAAT+TGG + chr4_2:11855880-11855899 Msa0589260:CDS 35.0%
AATTACTCCTCCGTTCAATT+GGG + chr4_2:11855881-11855900 Msa0589260:CDS 35.0%
GTGTACATTATTGAGCGATA+CGG + chr4_2:11855930-11855949 Msa0589260:CDS 35.0%
!! AGGGATCAAATAATGGATTC+CGG - chr4_2:11855979-11855998 None:intergenic 35.0%
CAACAAGAGGGATCAAATAA+TGG - chr4_2:11855986-11856005 None:intergenic 35.0%
AGCAAACCTTCAACGTATAT+GGG - chr4_2:11856092-11856111 None:intergenic 35.0%
AAGCAAACCTTCAACGTATA+TGG - chr4_2:11856093-11856112 None:intergenic 35.0%
!!! TGTGTTTTTAGTGCAGATTG+TGG + chr4_2:11856195-11856214 Msa0589260:intron 35.0%
!!! AGTTTTAAGTTGTTTCGGAC+TGG + chr4_2:11856440-11856459 Msa0589260:three_prime_UTR 35.0%
CTAATATAACTACTGCTGCA+TGG - chr4_2:11856602-11856621 None:intergenic 35.0%
!! TTTTAATTCTTCACCACAGG+AGG - chr4_2:11855557-11855576 None:intergenic 35.0%
AAATTACTCCTCCGTTCAAT+TGG + chr4_2:11855880-11855899 Msa0589260:CDS 35.0%
AATTACTCCTCCGTTCAATT+GGG + chr4_2:11855881-11855900 Msa0589260:CDS 35.0%
GTGTACATTATTGAGCGATA+CGG + chr4_2:11855930-11855949 Msa0589260:CDS 35.0%
!! AGGGATCAAATAATGGATTC+CGG - chr4_2:11855979-11855998 None:intergenic 35.0%
CAACAAGAGGGATCAAATAA+TGG - chr4_2:11855986-11856005 None:intergenic 35.0%
AGCAAACCTTCAACGTATAT+GGG - chr4_2:11856092-11856111 None:intergenic 35.0%
AAGCAAACCTTCAACGTATA+TGG - chr4_2:11856093-11856112 None:intergenic 35.0%
!!! TGTGTTTTTAGTGCAGATTG+TGG + chr4_2:11856195-11856214 Msa0589260:intron 35.0%
!!! AGTTTTAAGTTGTTTCGGAC+TGG + chr4_2:11856440-11856459 Msa0589260:three_prime_UTR 35.0%
CTAATATAACTACTGCTGCA+TGG - chr4_2:11856602-11856621 None:intergenic 35.0%
! TCTCTTCCTTTTCGCGAAAA+TGG + chr4_2:11855655-11855674 Msa0589260:exon 40.0%
ACAGCTGTGAAGAAATCGAA+CGG - chr4_2:11855756-11855775 None:intergenic 40.0%
ATTACTCCTCCGTTCAATTG+GGG + chr4_2:11855882-11855901 Msa0589260:CDS 40.0%
!! ATCAAATAATGGATTCCGGG+TGG - chr4_2:11855975-11855994 None:intergenic 40.0%
!! GGGATCAAATAATGGATTCC+GGG - chr4_2:11855978-11855997 None:intergenic 40.0%
CATTATCCTTAGTGGTAGCA+AGG - chr4_2:11856067-11856086 None:intergenic 40.0%
TATGGGGACATTATCCTTAG+TGG - chr4_2:11856075-11856094 None:intergenic 40.0%
AATGTCCCCATATACGTTGA+AGG + chr4_2:11856083-11856102 Msa0589260:CDS 40.0%
GCAAACCTTCAACGTATATG+GGG - chr4_2:11856091-11856110 None:intergenic 40.0%
TCCTGTACTTGCTTCTTATG+AGG + chr4_2:11856219-11856238 Msa0589260:CDS 40.0%
ACCTCATAAGAAGCAAGTAC+AGG - chr4_2:11856223-11856242 None:intergenic 40.0%
!! TCCACAACTACTTTTGGGAA+AGG + chr4_2:11856317-11856336 Msa0589260:CDS 40.0%
TCCTTTCCCAAAAGTAGTTG+TGG - chr4_2:11856321-11856340 None:intergenic 40.0%
! AACGCTCGATGCAAAGATTT+TGG + chr4_2:11856342-11856361 Msa0589260:CDS 40.0%
! TCTCTTCCTTTTCGCGAAAA+TGG + chr4_2:11855655-11855674 Msa0589260:exon 40.0%
ACAGCTGTGAAGAAATCGAA+CGG - chr4_2:11855756-11855775 None:intergenic 40.0%
ATTACTCCTCCGTTCAATTG+GGG + chr4_2:11855882-11855901 Msa0589260:CDS 40.0%
!! ATCAAATAATGGATTCCGGG+TGG - chr4_2:11855975-11855994 None:intergenic 40.0%
!! GGGATCAAATAATGGATTCC+GGG - chr4_2:11855978-11855997 None:intergenic 40.0%
CATTATCCTTAGTGGTAGCA+AGG - chr4_2:11856067-11856086 None:intergenic 40.0%
TATGGGGACATTATCCTTAG+TGG - chr4_2:11856075-11856094 None:intergenic 40.0%
AATGTCCCCATATACGTTGA+AGG + chr4_2:11856083-11856102 Msa0589260:CDS 40.0%
GCAAACCTTCAACGTATATG+GGG - chr4_2:11856091-11856110 None:intergenic 40.0%
TCCTGTACTTGCTTCTTATG+AGG + chr4_2:11856219-11856238 Msa0589260:CDS 40.0%
ACCTCATAAGAAGCAAGTAC+AGG - chr4_2:11856223-11856242 None:intergenic 40.0%
!! TCCACAACTACTTTTGGGAA+AGG + chr4_2:11856317-11856336 Msa0589260:CDS 40.0%
TCCTTTCCCAAAAGTAGTTG+TGG - chr4_2:11856321-11856340 None:intergenic 40.0%
! AACGCTCGATGCAAAGATTT+TGG + chr4_2:11856342-11856361 Msa0589260:CDS 40.0%
CCATGGTACTACTACTACAG+TGG - chr4_2:11855531-11855550 None:intergenic 45.0%
CCACTGTAGTAGTAGTACCA+TGG + chr4_2:11855528-11855547 Msa0589260:five_prime_UTR 45.0%
!! TGTTGGCCATTTTCGCGAAA+AGG - chr4_2:11855664-11855683 None:intergenic 45.0%
AAGTGCGATTCTCGCTGAAT+TGG - chr4_2:11855696-11855715 None:intergenic 45.0%
AATTCAGCGAGAATCGCACT+TGG + chr4_2:11855695-11855714 Msa0589260:CDS 45.0%
TTACTCCTCCGTTCAATTGG+GGG + chr4_2:11855883-11855902 Msa0589260:CDS 45.0%
AACACAACCCCCCAATTGAA+CGG - chr4_2:11855894-11855913 None:intergenic 45.0%
TATGTCAAGACTCTTCCACC+CGG + chr4_2:11855957-11855976 Msa0589260:CDS 45.0%
ACCACAATGCGTAGTCAAGT+CGG + chr4_2:11856283-11856302 Msa0589260:CDS 45.0%
AATGCGTAGTCAAGTCGGTA+AGG + chr4_2:11856288-11856307 Msa0589260:CDS 45.0%
CCATGGTACTACTACTACAG+TGG - chr4_2:11855531-11855550 None:intergenic 45.0%
CCACTGTAGTAGTAGTACCA+TGG + chr4_2:11855528-11855547 Msa0589260:five_prime_UTR 45.0%
!! TGTTGGCCATTTTCGCGAAA+AGG - chr4_2:11855664-11855683 None:intergenic 45.0%
AAGTGCGATTCTCGCTGAAT+TGG - chr4_2:11855696-11855715 None:intergenic 45.0%
AATTCAGCGAGAATCGCACT+TGG + chr4_2:11855695-11855714 Msa0589260:CDS 45.0%
TTACTCCTCCGTTCAATTGG+GGG + chr4_2:11855883-11855902 Msa0589260:CDS 45.0%
AACACAACCCCCCAATTGAA+CGG - chr4_2:11855894-11855913 None:intergenic 45.0%
TATGTCAAGACTCTTCCACC+CGG + chr4_2:11855957-11855976 Msa0589260:CDS 45.0%
ACCACAATGCGTAGTCAAGT+CGG + chr4_2:11856283-11856302 Msa0589260:CDS 45.0%
AATGCGTAGTCAAGTCGGTA+AGG + chr4_2:11856288-11856307 Msa0589260:CDS 45.0%
!!! TTTGTTTTTATTAATTTAAT+TGG + chr4_2:11855832-11855851 Msa0589260:intron 5.0%
!!! TTTGTTTTTATTAATTTAAT+TGG + chr4_2:11855832-11855851 Msa0589260:intron 5.0%
AGTCAGAGATGCGCTTCATG+AGG - chr4_2:11855508-11855527 None:intergenic 50.0%
AGTACCATGGATTCCTCCTG+TGG + chr4_2:11855541-11855560 Msa0589260:five_prime_UTR 50.0%
TTCACCACAGGAGGAATCCA+TGG - chr4_2:11855548-11855567 None:intergenic 50.0%
TGGTTCCATCACCCAATCCT+TGG + chr4_2:11855715-11855734 Msa0589260:CDS 50.0%
TTCCATCACCCAATCCTTGG+CGG + chr4_2:11855718-11855737 Msa0589260:CDS 50.0%
GCTGTGAAGAAATCGAACGG+AGG - chr4_2:11855753-11855772 None:intergenic 50.0%
TACTCCTCCGTTCAATTGGG+GGG + chr4_2:11855884-11855903 Msa0589260:CDS 50.0%
TTAGTGGTAGCAAGGTGAGC+AGG - chr4_2:11856059-11856078 None:intergenic 50.0%
TGCTCACCTTGCTACCACTA+AGG + chr4_2:11856058-11856077 Msa0589260:CDS 50.0%
!! ACCGACTTGACTACGCATTG+TGG - chr4_2:11856287-11856306 None:intergenic 50.0%
!! GCGGAGCTAGATTTGGCTTT+AGG - chr4_2:11856466-11856485 None:intergenic 50.0%
! AAGCCAAATCTAGCTCCGCT+CGG + chr4_2:11856467-11856486 Msa0589260:three_prime_UTR 50.0%
!! TGTCGCCTGCTTAATGGACT+CGG - chr4_2:11856500-11856519 None:intergenic 50.0%
!! CTATGGTGTCGCCTGCTTAA+TGG - chr4_2:11856506-11856525 None:intergenic 50.0%
AGTCAGAGATGCGCTTCATG+AGG - chr4_2:11855508-11855527 None:intergenic 50.0%
AGTACCATGGATTCCTCCTG+TGG + chr4_2:11855541-11855560 Msa0589260:five_prime_UTR 50.0%
TTCACCACAGGAGGAATCCA+TGG - chr4_2:11855548-11855567 None:intergenic 50.0%
TGGTTCCATCACCCAATCCT+TGG + chr4_2:11855715-11855734 Msa0589260:CDS 50.0%
TTCCATCACCCAATCCTTGG+CGG + chr4_2:11855718-11855737 Msa0589260:CDS 50.0%
GCTGTGAAGAAATCGAACGG+AGG - chr4_2:11855753-11855772 None:intergenic 50.0%
TACTCCTCCGTTCAATTGGG+GGG + chr4_2:11855884-11855903 Msa0589260:CDS 50.0%
TTAGTGGTAGCAAGGTGAGC+AGG - chr4_2:11856059-11856078 None:intergenic 50.0%
TGCTCACCTTGCTACCACTA+AGG + chr4_2:11856058-11856077 Msa0589260:CDS 50.0%
!! ACCGACTTGACTACGCATTG+TGG - chr4_2:11856287-11856306 None:intergenic 50.0%
!! GCGGAGCTAGATTTGGCTTT+AGG - chr4_2:11856466-11856485 None:intergenic 50.0%
! AAGCCAAATCTAGCTCCGCT+CGG + chr4_2:11856467-11856486 Msa0589260:three_prime_UTR 50.0%
!! TGTCGCCTGCTTAATGGACT+CGG - chr4_2:11856500-11856519 None:intergenic 50.0%
!! CTATGGTGTCGCCTGCTTAA+TGG - chr4_2:11856506-11856525 None:intergenic 50.0%
AGAGATGCGCTTCATGAGGC+TGG - chr4_2:11855504-11855523 None:intergenic 55.0%
TTCTTCACAGCTGTCGAGCC+AGG + chr4_2:11855762-11855781 Msa0589260:CDS 55.0%
ACAACCCCCCAATTGAACGG+AGG - chr4_2:11855891-11855910 None:intergenic 55.0%
GATCCGAGCGGAGCTAGATT+TGG - chr4_2:11856473-11856492 None:intergenic 55.0%
!! CCTGCTTAATGGACTCGGGT+CGG - chr4_2:11856495-11856514 None:intergenic 55.0%
!! GTCGCCTGCTTAATGGACTC+GGG - chr4_2:11856499-11856518 None:intergenic 55.0%
AGAGATGCGCTTCATGAGGC+TGG - chr4_2:11855504-11855523 None:intergenic 55.0%
TTCTTCACAGCTGTCGAGCC+AGG + chr4_2:11855762-11855781 Msa0589260:CDS 55.0%
ACAACCCCCCAATTGAACGG+AGG - chr4_2:11855891-11855910 None:intergenic 55.0%
GATCCGAGCGGAGCTAGATT+TGG - chr4_2:11856473-11856492 None:intergenic 55.0%
!! CCTGCTTAATGGACTCGGGT+CGG - chr4_2:11856495-11856514 None:intergenic 55.0%
!! GTCGCCTGCTTAATGGACTC+GGG - chr4_2:11856499-11856518 None:intergenic 55.0%
CATCACCCAATCCTTGGCGG+CGG + chr4_2:11855721-11855740 Msa0589260:CDS 60.0%
CCGACCCGAGTCCATTAAGC+AGG + chr4_2:11856492-11856511 Msa0589260:three_prime_UTR 60.0%
CATCACCCAATCCTTGGCGG+CGG + chr4_2:11855721-11855740 Msa0589260:CDS 60.0%
CCGACCCGAGTCCATTAAGC+AGG + chr4_2:11856492-11856511 Msa0589260:three_prime_UTR 60.0%
CGCCGCCAAGGATTGGGTGA+TGG - chr4_2:11855723-11855742 None:intergenic 65.0%
CGCCGCCAAGGATTGGGTGA+TGG - chr4_2:11855723-11855742 None:intergenic 65.0%
CGACGCCGCCGCCAAGGATT+GGG - chr4_2:11855729-11855748 None:intergenic 70.0%
ACGACGCCGCCGCCAAGGAT+TGG - chr4_2:11855730-11855749 None:intergenic 70.0%
GGACTCGGGTCGGATCCGAG+CGG - chr4_2:11856485-11856504 None:intergenic 70.0%
CGACGCCGCCGCCAAGGATT+GGG - chr4_2:11855729-11855748 None:intergenic 70.0%
ACGACGCCGCCGCCAAGGAT+TGG - chr4_2:11855730-11855749 None:intergenic 70.0%
GGACTCGGGTCGGATCCGAG+CGG - chr4_2:11856485-11856504 None:intergenic 70.0%
! GGAGGACGACGCCGCCGCCA+AGG - chr4_2:11855735-11855754 None:intergenic 80.0%
! GGAGGACGACGCCGCCGCCA+AGG - chr4_2:11855735-11855754 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 11855487 11856646 11855487 ID=Msa0589260;Name=Msa0589260
chr4_2 mRNA 11855487 11856646 11855487 ID=Msa0589260-mRNA-1;Parent=Msa0589260;Name=Msa0589260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=187|1|1|1|1|1|3|268|175
chr4_2 exon 11855487 11855783 11855487 ID=Msa0589260-mRNA-1:exon:3473;Parent=Msa0589260-mRNA-1
chr4_2 exon 11855872 11856121 11855872 ID=Msa0589260-mRNA-1:exon:3474;Parent=Msa0589260-mRNA-1
chr4_2 exon 11856211 11856646 11856211 ID=Msa0589260-mRNA-1:exon:3475;Parent=Msa0589260-mRNA-1
chr4_2 five_prime_UTR 11855487 11855673 11855487 ID=Msa0589260-mRNA-1:five_prime_utr;Parent=Msa0589260-mRNA-1
chr4_2 CDS 11855674 11855783 11855674 ID=Msa0589260-mRNA-1:cds;Parent=Msa0589260-mRNA-1
chr4_2 CDS 11855872 11856121 11855872 ID=Msa0589260-mRNA-1:cds;Parent=Msa0589260-mRNA-1
chr4_2 CDS 11856211 11856378 11856211 ID=Msa0589260-mRNA-1:cds;Parent=Msa0589260-mRNA-1
chr4_2 three_prime_UTR 11856379 11856646 11856379 ID=Msa0589260-mRNA-1:three_prime_utr;Parent=Msa0589260-mRNA-1
Gene Sequence

>Msa0589260

ATGGCCAACATTTTGAAATCCAATTCAGCGAGAATCGCACTTGGTTCCATCACCCAATCCTTGGCGGCGGCGTCGTCCTCCGTTCGATTTCTTCACAGCTGTCGAGCCAGGGATCGTGAAATTACTCCTCCGTTCAATTGGGGGGTTGTGTTTGTAGATTTTTCGAAAGTGTACATTATTGAGCGATACGGAAAGTATGTCAAGACTCTTCCACCCGGAATCCATTATTTGATCCCTCTTGTTGATAGAATTGCTTACGTTCATTCGATAATAAAAAATCAAAGTATCGAGATTCCTGCTCACCTTGCTACCACTAAGGATAATGTCCCCATATACGTTGAAGGTTTGCTTTTTTTTGAGATTGTGGATCCTGTACTTGCTTCTTATGAGGTTGAGACTACCCTTTATGATGATGTCATTCAACTGGCTCAAACCACAATGCGTAGTCAAGTCGGTAAGGTTATTCTCCACAACTACTTTTGGGAAAGGAGAACGCTCGATGCAAAGATTTTGGTAAGTTTAGTTTAA
Protein sequence

>Msa0589260

MANILKSNSARIALGSITQSLAAASSSVRFLHSCRARDREITPPFNWGVVFVDFSKVYIIERYGKYVKTLPPGIHYLIPLVDRIAYVHSIIKNQSIEIPAHLATTKDNVPIYVEGLLFFEIVDPVLASYEVETTLYDDVIQLAQTTMRSQVGKVILHNYFWERRTLDAKILVSLV*