AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0536280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0536280 MtrunA17_Chr4g0010151 97.541 366 7 1 1 366 1 364 0.0 725
Msa0536280 MtrunA17_Chr7g0237921 49.354 387 126 14 1 362 1 342 5.15e-88 269
Msa0536280 MtrunA17_Chr4g0031411 44.509 346 140 14 1 325 1 315 3.86e-67 215
Msa0536280 MtrunA17_Chr2g0328021 39.557 316 117 17 1 310 1 248 5.29e-48 164
Msa0536280 MtrunA17_Chr7g0223311 36.896 393 183 16 1 356 1 365 1.86e-47 165
Msa0536280 MtrunA17_Chr3g0127201 69.737 76 19 1 63 138 12 83 3.61e-32 122
Msa0536280 MtrunA17_Chr2g0326001 80.328 61 12 0 76 136 34 94 3.91e-31 119
Msa0536280 MtrunA17_Chr8g0346551 45.324 139 65 3 69 205 11 140 5.40e-31 118
Msa0536280 MtrunA17_Chr8g0374251 51.351 111 49 2 82 188 68 177 8.06e-30 117
Msa0536280 MtrunA17_Chr5g0411951 81.818 55 10 0 78 132 39 93 2.95e-29 115
Msa0536280 MtrunA17_Chr8g0341671 75.000 68 15 2 74 140 13 79 4.00e-29 112
Msa0536280 MtrunA17_Chr3g0117601 63.855 83 27 2 50 132 32 111 4.61e-29 115
Msa0536280 MtrunA17_Chr4g0030051 81.356 59 10 1 76 134 36 93 5.53e-29 114
Msa0536280 MtrunA17_Chr3g0126201 64.865 74 26 0 63 136 32 105 6.00e-29 114
Msa0536280 MtrunA17_Chr8g0367161 69.841 63 19 0 79 141 29 91 1.69e-28 113
Msa0536280 MtrunA17_Chr8g0374111 54.255 94 32 2 61 153 17 100 1.84e-28 110
Msa0536280 MtrunA17_Chr2g0282511 86.275 51 7 0 81 131 44 94 2.43e-28 112
Msa0536280 MtrunA17_Chr1g0177251 56.250 96 36 1 84 179 14 103 2.26e-27 109
Msa0536280 MtrunA17_Chr2g0308011 86.000 50 7 0 81 130 36 85 3.33e-27 107
Msa0536280 MtrunA17_Chr1g0188851 55.000 80 34 1 59 136 18 97 8.27e-27 107
Msa0536280 MtrunA17_Chr4g0061761 80.769 52 10 0 81 132 39 90 1.08e-26 108
Msa0536280 MtrunA17_Chr2g0282441 66.667 72 19 2 62 133 10 76 2.58e-26 107
Msa0536280 MtrunA17_Chr8g0355261 68.333 60 19 0 78 137 114 173 6.46e-26 107
Msa0536280 MtrunA17_Chr4g0047761 74.138 58 14 1 82 139 72 128 1.50e-25 105
Msa0536280 MtrunA17_Chr6g0453321 67.213 61 20 0 78 138 132 192 1.98e-25 107
Msa0536280 MtrunA17_Chr2g0282051 71.930 57 15 1 80 136 44 99 2.06e-25 103
Msa0536280 MtrunA17_Chr2g0283811 70.175 57 17 0 79 135 44 100 5.11e-25 99.8
Msa0536280 MtrunA17_Chr6g0460721 62.903 62 23 0 75 136 82 143 5.73e-25 103
Msa0536280 MtrunA17_Chr4g0042481 65.079 63 22 0 78 140 118 180 1.04e-24 104
Msa0536280 MtrunA17_Chr5g0417571 45.833 96 49 1 43 138 102 194 2.08e-24 102
Msa0536280 MtrunA17_Chr7g0217581 62.500 64 24 0 75 138 225 288 2.18e-24 104
Msa0536280 MtrunA17_Chr7g0254161 62.295 61 23 0 75 135 94 154 3.00e-24 103
Msa0536280 MtrunA17_Chr3g0092111 63.492 63 23 0 78 140 132 194 3.74e-24 103
Msa0536280 MtrunA17_Chr6g0460731 60.656 61 24 0 75 135 89 149 5.22e-24 101
Msa0536280 MtrunA17_Chr5g0417551 53.247 77 36 0 66 142 111 187 7.91e-23 98.2
Msa0536280 MtrunA17_Chr5g0417561 48.235 85 44 0 58 142 95 179 3.31e-22 96.7
Msa0536280 MtrunA17_Chr5g0417601 45.977 87 44 1 52 135 107 193 5.59e-22 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0536280 AT3G55370.2 38.071 394 162 18 1 353 1 353 3.25e-54 182
Msa0536280 AT3G55370.1 43.243 296 109 14 1 278 1 255 4.82e-54 181
Msa0536280 AT2G37590.1 41.566 332 146 11 1 311 1 305 8.24e-50 170
Msa0536280 AT5G02460.1 39.257 377 142 14 1 315 1 352 2.52e-47 166
Msa0536280 AT3G55370.3 46.531 245 87 13 45 278 89 300 4.63e-47 164
Msa0536280 AT2G28810.1 34.409 372 176 15 1 345 1 331 6.63e-38 139
Msa0536280 AT1G07640.3 50.694 144 65 3 5 142 2 145 5.86e-37 136
Msa0536280 AT5G60200.1 57.407 108 45 1 78 184 51 158 1.76e-36 133
Msa0536280 AT1G07640.2 53.731 134 56 3 15 142 4 137 2.18e-36 135
Msa0536280 AT1G07640.1 70.886 79 23 0 64 142 3 81 4.35e-36 132
Msa0536280 AT2G28810.2 34.593 344 164 12 23 345 11 314 1.24e-35 132
Msa0536280 AT3G45610.1 55.238 105 44 2 78 181 36 138 4.51e-34 126
Msa0536280 AT5G65590.1 38.235 238 102 8 42 249 8 230 6.56e-32 122
Msa0536280 AT1G51700.1 60.000 95 34 3 77 167 27 121 9.62e-31 116
Msa0536280 AT1G28310.1 79.310 58 12 0 82 139 27 84 3.89e-30 117
Msa0536280 AT2G28510.1 81.967 61 11 0 81 141 47 107 4.33e-30 117
Msa0536280 AT1G28310.2 79.310 58 12 0 82 139 51 108 5.41e-30 117
Msa0536280 AT5G60850.1 71.014 69 20 0 69 137 38 106 1.77e-29 115
Msa0536280 AT3G61850.2 75.410 61 15 0 78 138 58 118 7.10e-29 113
Msa0536280 AT3G61850.3 75.410 61 15 0 78 138 58 118 7.10e-29 113
Msa0536280 AT3G61850.1 75.410 61 15 0 78 138 70 130 7.53e-29 114
Msa0536280 AT3G21270.1 84.906 53 8 0 82 134 29 81 8.63e-29 111
Msa0536280 AT3G61850.5 75.410 61 15 0 78 138 58 118 1.03e-28 114
Msa0536280 AT3G61850.4 75.410 61 15 0 78 138 70 130 1.35e-28 114
Msa0536280 AT4G38000.1 73.438 64 16 1 76 138 35 98 4.40e-28 110
Msa0536280 AT3G52440.1 58.140 86 36 0 79 164 22 107 5.69e-28 110
Msa0536280 AT3G52440.2 58.140 86 36 0 79 164 41 126 9.66e-28 110
Msa0536280 AT5G66940.1 48.958 96 38 2 63 147 2 97 3.99e-27 107
Msa0536280 AT1G21340.1 68.750 64 20 0 80 143 36 99 8.82e-27 107
Msa0536280 AT5G62940.1 86.000 50 7 0 83 132 74 123 1.84e-26 108
Msa0536280 AT2G34140.1 51.685 89 40 1 47 135 26 111 2.13e-26 103
Msa0536280 AT3G50410.1 69.492 59 18 0 82 140 30 88 3.30e-26 105
Msa0536280 AT4G00940.1 71.186 59 17 0 78 136 64 122 5.13e-26 106
Msa0536280 AT4G00940.3 71.186 59 17 0 78 136 64 122 5.13e-26 106
Msa0536280 AT4G00940.2 71.186 59 17 0 78 136 64 122 5.13e-26 106
Msa0536280 AT2G46590.1 78.846 52 11 0 78 129 64 115 2.27e-25 105
Msa0536280 AT2G46590.2 78.846 52 11 0 78 129 76 127 2.70e-25 105
Msa0536280 AT4G21050.1 66.129 62 21 0 75 136 17 78 5.66e-25 101
Msa0536280 AT1G29160.1 68.966 58 18 0 78 135 58 115 6.01e-25 100
Msa0536280 AT3G47500.1 64.062 64 23 0 75 138 103 166 1.10e-24 105
Msa0536280 AT1G64620.1 74.545 55 14 0 76 130 43 97 1.38e-24 103
Msa0536280 AT1G26790.1 55.072 69 31 0 67 135 96 164 4.15e-24 102
Msa0536280 AT1G69570.1 62.295 61 23 0 75 135 125 185 6.04e-24 102
Msa0536280 AT5G62430.1 58.209 67 28 0 75 141 47 113 1.24e-23 99.8
Msa0536280 AT5G39660.3 62.903 62 23 0 74 135 130 191 1.43e-23 101
Msa0536280 AT5G39660.1 62.903 62 23 0 74 135 130 191 1.43e-23 101
Msa0536280 AT5G39660.2 62.903 62 23 0 74 135 130 191 1.43e-23 101
Msa0536280 AT1G47655.1 68.333 60 17 1 73 130 18 77 1.98e-23 97.1
Msa0536280 AT4G21040.1 50.562 89 40 1 84 172 27 111 4.57e-22 94.0
Msa0536280 AT4G21080.1 47.674 86 41 1 84 169 27 108 9.33e-21 90.9
Msa0536280 AT4G21030.1 55.932 59 23 1 71 129 13 68 2.96e-14 71.2

Find 123 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGATATTATCAATATTT+TGG 0.080654 4_1:+13163883 Msa0536280:three_prime_UTR
ATCAAGGAAGTGAACAATTT+TGG 0.154411 4_1:+13163480 Msa0536280:CDS
AATTGGACTGATCATGTTTC+TGG 0.157222 4_1:+13163536 Msa0536280:CDS
TCAACTTGCTTCTGTGAAAA+TGG 0.216358 4_1:+13163403 Msa0536280:CDS
GTCGGAGGAGGAGGAGATTT+AGG 0.225483 4_1:+13163113 Msa0536280:CDS
CCAGAAGTTGAAATCACTTT+TGG 0.251474 4_1:-13163371 None:intergenic
GCAAGTCTTGCAGAAGTGTC+TGG 0.259253 4_1:-13162811 None:intergenic
CCAAAAGTGATTTCAACTTC+TGG 0.271253 4_1:+13163371 Msa0536280:CDS
GGTGATTTGGGAAGTGCTTT+AGG 0.279369 4_1:+13163170 Msa0536280:CDS
GGAAGAGTGGATATTGTTAT+TGG 0.289267 4_1:-13163000 None:intergenic
TCCATTCAAAATAGATGAAT+TGG 0.290082 4_1:+13163678 Msa0536280:three_prime_UTR
ATGGGAGGAGTAGGTGATTT+GGG 0.291520 4_1:+13163158 Msa0536280:CDS
GAGACGGAGCCGCCGTTTCC+TGG 0.321013 4_1:-13162576 None:intergenic
CATGGGAGGAGTAGGTGATT+TGG 0.324852 4_1:+13163157 Msa0536280:CDS
TGGAATAGTGCTGTTGTTAC+TGG 0.330687 4_1:+13163500 Msa0536280:CDS
TCCCGGTTGGTGGAGGCTTC+CGG 0.334717 4_1:+13162871 Msa0536280:CDS
CTGGTAATTCTGCAGCTAAT+TGG 0.337179 4_1:+13163519 Msa0536280:CDS
GGACAAGAGGCGGCGCTCTA+AGG 0.351075 4_1:+13162844 Msa0536280:CDS
TGAAGTGAAGCTTATGGTTT+TGG 0.351651 4_1:+13163618 Msa0536280:three_prime_UTR
TCGGAGGAGGAGGAGATTTA+GGG 0.351804 4_1:+13163114 Msa0536280:CDS
CCTCCGACGACGAAATCATT+AGG 0.352853 4_1:-13163098 None:intergenic
CTCCGGAAGCCTCCACCAAC+CGG 0.381217 4_1:-13162873 None:intergenic
GGAGATTTAGGGTTAAACTA+TGG 0.382883 4_1:+13163125 Msa0536280:CDS
CACTCTTCCGCCGATATATT+AGG 0.387275 4_1:+13163014 Msa0536280:CDS
GCCCTATCGGACATCGATCC+TGG 0.393185 4_1:-13162684 None:intergenic
AATGGAAGATAGTATCAATA+GGG 0.409067 4_1:+13163421 Msa0536280:CDS
TGCTTGATCTCTTGTTTCTC+CGG 0.410783 4_1:-13162890 None:intergenic
CTTCAAGTGGTTTGGAGCAA+TGG 0.413375 4_1:+13163210 Msa0536280:CDS
TTGAACTAGCACTCCCCGTT+TGG 0.413567 4_1:-13162962 None:intergenic
AAATGGAAGATAGTATCAAT+AGG 0.414206 4_1:+13163420 Msa0536280:CDS
CTTATCTTGATGCAGCCAAC+TGG 0.417162 4_1:+13162277 Msa0536280:CDS
GAATGTTTGATTTAACTTGC+TGG 0.420426 4_1:+13163909 Msa0536280:three_prime_UTR
GATTTCGTCGTCGGAGGAGG+AGG 0.420497 4_1:+13163104 Msa0536280:CDS
GCTAGCTCTGACCGCCAAAC+GGG 0.425727 4_1:+13162948 Msa0536280:CDS
CTCCGACGACGAAATCATTA+GGG 0.432362 4_1:-13163097 None:intergenic
ACACTATAAAATTCTACATC+TGG 0.437923 4_1:-13163589 None:intergenic
TGTGACTGTGGTGGTGGTGG+TGG 0.440507 4_1:-13162621 None:intergenic
GCAAGACTTGCAGAAGGTAC+TGG 0.454376 4_1:+13162823 Msa0536280:CDS
ATGAATTGGTAAGGGATTTG+AGG 0.455775 4_1:+13163692 Msa0536280:three_prime_UTR
TGCAGCCAACTGGCAGCAAC+AGG 0.457644 4_1:+13162287 Msa0536280:CDS
TCAAAATAGATGAATTGGTA+AGG 0.458418 4_1:+13163683 Msa0536280:three_prime_UTR
GTTTCTTTGTATGAGAAGGT+TGG 0.458599 4_1:+13163822 Msa0536280:three_prime_UTR
CTAAGGAATGTCCCGGTTGG+TGG 0.464766 4_1:+13162861 Msa0536280:CDS
AATGATTTCGTCGTCGGAGG+AGG 0.466998 4_1:+13163101 Msa0536280:CDS
GAGGATCCACCGGCTCAATT+AGG 0.467697 4_1:+13162661 Msa0536280:CDS
GTTCGCCATCCTTGCCCTAT+CGG 0.470894 4_1:-13162697 None:intergenic
TCTTCACTATTATCACCTAA+AGG 0.472393 4_1:+13162205 Msa0536280:five_prime_UTR
TTTGAACATTTCCTTCAAAA+GGG 0.473490 4_1:-13163313 None:intergenic
AACTAGCACTCCCCGTTTGG+CGG 0.478302 4_1:-13162959 None:intergenic
AGGTGTAAGGCCTAATATAT+CGG 0.483491 4_1:-13163024 None:intergenic
GGCTAGCTCTGACCGCCAAA+CGG 0.486093 4_1:+13162947 Msa0536280:CDS
GGAAACAATAACAGTAATCA+AGG 0.492146 4_1:+13163464 Msa0536280:CDS
AAATAAAATATAATATCCCT+AGG 0.492696 4_1:-13163742 None:intergenic
TTAGGTTTCTTTGTATGAGA+AGG 0.493011 4_1:+13163818 Msa0536280:three_prime_UTR
TTTAGTTACATGGGAGGAGT+AGG 0.502079 4_1:+13163149 Msa0536280:CDS
CAAGTCTTGCAGAAGTGTCT+GGG 0.504581 4_1:-13162810 None:intergenic
GACTGTGACTGTGGTGGTGG+TGG 0.506110 4_1:-13162624 None:intergenic
AGGAATGTCCCGGTTGGTGG+AGG 0.511348 4_1:+13162864 Msa0536280:CDS
GGACATTTCAGTGCTGCCTC+CGG 0.520025 4_1:-13162729 None:intergenic
AGAGTGGATATTGTTATTGG+AGG 0.520652 4_1:-13162997 None:intergenic
TTCAGTGCTGCCTCCGGCAT+AGG 0.523439 4_1:-13162723 None:intergenic
TTAGATCAACTGAAAACCCT+AGG 0.532702 4_1:+13163725 Msa0536280:three_prime_UTR
TTACTGAAGTTATGATGTAA+AGG 0.534579 4_1:-13163074 None:intergenic
ATCAAGATAAGCTGCTGGTA+TGG 0.536728 4_1:-13162265 None:intergenic
ATTTACCTGTTGCTGCCAGT+TGG 0.539661 4_1:-13162292 None:intergenic
CAAAATAGATGAATTGGTAA+GGG 0.539878 4_1:+13163684 Msa0536280:three_prime_UTR
GATGGCGAACATGCCTATGC+CGG 0.544192 4_1:+13162710 Msa0536280:CDS
CATCATCAGCAACCAGGAAA+CGG 0.545159 4_1:+13162564 Msa0536280:CDS
CACCTCAAATGTCATCATTG+AGG 0.546296 4_1:+13163042 Msa0536280:CDS
CGATCCTGGCCTAATTGAGC+CGG 0.550851 4_1:-13162670 None:intergenic
TGGAAACTCAACAAAGTCTC+CGG 0.552418 4_1:+13162926 Msa0536280:CDS
TGAGACTGTGACTGTGGTGG+TGG 0.553445 4_1:-13162627 None:intergenic
CAAGTGGTTTGGAGCAATGG+AGG 0.557508 4_1:+13163213 Msa0536280:CDS
AACCCTAATGATTTCGTCGT+CGG 0.557922 4_1:+13163095 Msa0536280:CDS
CCTCATGGAGGAGGATCCAC+CGG 0.558615 4_1:+13162651 Msa0536280:CDS
ATGATGACATTTGAGGTGTA+AGG 0.560208 4_1:-13163037 None:intergenic
CAGTCACAGTCTCAACCTCA+TGG 0.560556 4_1:+13162636 Msa0536280:CDS
GCCAGGATCGATGTCCGATA+GGG 0.563470 4_1:+13162683 Msa0536280:CDS
TCAAGCAAAAGTAGCAACAA+TGG 0.567762 4_1:+13162906 Msa0536280:CDS
TCCTGGCCTAATTGAGCCGG+TGG 0.569726 4_1:-13162667 None:intergenic
ACATTGTGAGTTCAAAGGAA+TGG 0.570549 4_1:+13163865 Msa0536280:three_prime_UTR
CAGAATCATCATCAGCAACC+AGG 0.572861 4_1:+13162558 Msa0536280:CDS
GATGTCCGATAGGGCAAGGA+TGG 0.573727 4_1:+13162692 Msa0536280:CDS
CCTAATGATTTCGTCGTCGG+AGG 0.575198 4_1:+13163098 Msa0536280:CDS
AACCTCAATGATGACATTTG+AGG 0.576269 4_1:-13163044 None:intergenic
TTTGTGTGAAGTGAAGCTTA+TGG 0.576790 4_1:+13163612 Msa0536280:three_prime_UTR
CATGAAATGATAACTAGTGG+TGG 0.580805 4_1:+13163338 Msa0536280:CDS
CTAATATATCGGCGGAAGAG+TGG 0.581651 4_1:-13163013 None:intergenic
TCCGGAAGCCTCCACCAACC+GGG 0.583043 4_1:-13162872 None:intergenic
TCCACCGGCTCAATTAGGCC+AGG 0.583672 4_1:+13162666 Msa0536280:CDS
GATTTGGGAAGTGCTTTAGG+AGG 0.585086 4_1:+13163173 Msa0536280:CDS
CGGCGCTCTAAGGAATGTCC+CGG 0.585823 4_1:+13162854 Msa0536280:CDS
GGCCAGGATCGATGTCCGAT+AGG 0.588624 4_1:+13162682 Msa0536280:CDS
CAGTCTCAACCTCATGGAGG+AGG 0.588847 4_1:+13162642 Msa0536280:CDS
TAGTAACATTGTGAGTTCAA+AGG 0.592653 4_1:+13163860 Msa0536280:three_prime_UTR
CTGAAGCAGTTGTTGAGAGA+CGG 0.593094 4_1:-13162592 None:intergenic
GGCGAACATGCCTATGCCGG+AGG 0.593250 4_1:+13162713 Msa0536280:CDS
GCTGCATCAAGATAAGCTGC+TGG 0.594629 4_1:-13162270 None:intergenic
GCTCTAAGGAATGTCCCGGT+TGG 0.597092 4_1:+13162858 Msa0536280:CDS
AGTGGTTATGAATGTTTGAG+AGG 0.597784 4_1:-13162084 None:intergenic
GTTTGGCGGTCAGAGCTAGC+CGG 0.603255 4_1:-13162945 None:intergenic
TGCAGAAGGTACTGGACAAG+AGG 0.603431 4_1:+13162831 Msa0536280:CDS
AATCATGAAATGATAACTAG+TGG 0.606438 4_1:+13163335 Msa0536280:CDS
TGAGGTTGAGACTGTGACTG+TGG 0.613393 4_1:-13162633 None:intergenic
AGAAGGTACTGGACAAGAGG+CGG 0.614306 4_1:+13162834 Msa0536280:CDS
GATCGATGTCCGATAGGGCA+AGG 0.614474 4_1:+13162688 Msa0536280:CDS
GCAAGAAAGAAATTAACAAG+TGG 0.623945 4_1:-13162102 None:intergenic
AAATTCAAAGAGAGAAAACA+TGG 0.627320 4_1:+13162233 Msa0536280:exon
AATAAAATATAATATCCCTA+GGG 0.631283 4_1:-13163741 None:intergenic
CTAGCTCTGACCGCCAAACG+GGG 0.632683 4_1:+13162949 Msa0536280:CDS
TAGATCAACTGAAAACCCTA+GGG 0.635361 4_1:+13163726 Msa0536280:three_prime_UTR
ATGGAAGATAGTATCAATAG+GGG 0.643018 4_1:+13163422 Msa0536280:CDS
GAGTGTCTATGTGTTTGTGT+TGG 0.643300 4_1:-13162152 None:intergenic
TGTTGATGAGTCATTGACAT+TGG 0.657135 4_1:-13163239 None:intergenic
CATCAGCAACCAGGAAACGG+CGG 0.659295 4_1:+13162567 Msa0536280:CDS
ACTTCTGCAAGACTTGCAGA+AGG 0.679196 4_1:+13162817 Msa0536280:CDS
GGTTGAGACTGTGACTGTGG+TGG 0.680166 4_1:-13162630 None:intergenic
CCGGTGGATCCTCCTCCATG+AGG 0.687789 4_1:-13162651 None:intergenic
TGAAGAGAATCACATCAACA+AGG 0.700150 4_1:-13162188 None:intergenic
TGTAAGGCCTAATATATCGG+CGG 0.708601 4_1:-13163021 None:intergenic
TAACTAGTGGTGGATATGTG+AGG 0.730675 4_1:+13163348 Msa0536280:CDS
GTGTTGGTTGATTCACAACG+TGG 0.731087 4_1:-13162750 None:intergenic
TCACAGTCTCAACCTCATGG+AGG 0.766876 4_1:+13162639 Msa0536280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTCAAAAGATAAAA+AGG + chr4_1:13162375-13162394 Msa0536280:intron 10.0%
!!! TAATATGTTACTTTTAATAT+AGG + chr4_1:13163794-13163813 Msa0536280:three_prime_UTR 10.0%
!! AAATAATTCAAAAGATAAAA+AGG + chr4_1:13162375-13162394 Msa0536280:intron 10.0%
!!! TAATATGTTACTTTTAATAT+AGG + chr4_1:13163794-13163813 Msa0536280:three_prime_UTR 10.0%
!! TAAGAAAGAAATCAAATATT+TGG - chr4_1:13162453-13162472 None:intergenic 15.0%
!! AATAAAATATAATATCCCTA+GGG - chr4_1:13163744-13163763 None:intergenic 15.0%
!! AAATAAAATATAATATCCCT+AGG - chr4_1:13163745-13163764 None:intergenic 15.0%
!!! AATGGATATTATCAATATTT+TGG + chr4_1:13163883-13163902 Msa0536280:three_prime_UTR 15.0%
!!! ATGGATATTATCAATATTTT+GGG + chr4_1:13163884-13163903 Msa0536280:three_prime_UTR 15.0%
!! TAAGAAAGAAATCAAATATT+TGG - chr4_1:13162453-13162472 None:intergenic 15.0%
!! AATAAAATATAATATCCCTA+GGG - chr4_1:13163744-13163763 None:intergenic 15.0%
!! AAATAAAATATAATATCCCT+AGG - chr4_1:13163745-13163764 None:intergenic 15.0%
!!! AATGGATATTATCAATATTT+TGG + chr4_1:13163883-13163902 Msa0536280:three_prime_UTR 15.0%
!!! ATGGATATTATCAATATTTT+GGG + chr4_1:13163884-13163903 Msa0536280:three_prime_UTR 15.0%
!!! CTTTGAATTTTTTTTCCTTT+AGG - chr4_1:13162223-13162242 None:intergenic 20.0%
!!! TTTTGAATTATTTTGCCTTT+TGG - chr4_1:13162368-13162387 None:intergenic 20.0%
!! AGTATATGAATTGAGAATAA+GGG - chr4_1:13162487-13162506 None:intergenic 20.0%
!! AACAACATAAATAGACAAAA+AGG - chr4_1:13162528-13162547 None:intergenic 20.0%
!!! AATTCAATTTTATCTTCAAG+TGG + chr4_1:13163197-13163216 Msa0536280:CDS 20.0%
!!! GTTACTTTTAATATAGGTTT+AGG + chr4_1:13163800-13163819 Msa0536280:three_prime_UTR 20.0%
!!! CTTTGAATTTTTTTTCCTTT+AGG - chr4_1:13162223-13162242 None:intergenic 20.0%
!!! TTTTGAATTATTTTGCCTTT+TGG - chr4_1:13162368-13162387 None:intergenic 20.0%
!! AGTATATGAATTGAGAATAA+GGG - chr4_1:13162487-13162506 None:intergenic 20.0%
!! AACAACATAAATAGACAAAA+AGG - chr4_1:13162528-13162547 None:intergenic 20.0%
!!! AATTCAATTTTATCTTCAAG+TGG + chr4_1:13163197-13163216 Msa0536280:CDS 20.0%
!!! GTTACTTTTAATATAGGTTT+AGG + chr4_1:13163800-13163819 Msa0536280:three_prime_UTR 20.0%
! AAATTCAAAGAGAGAAAACA+TGG + chr4_1:13162233-13162252 Msa0536280:exon 25.0%
! ACAGGTAAATATAATTAGCA+AGG + chr4_1:13162305-13162324 Msa0536280:intron 25.0%
! AAAGCAAGAACCAAATTAAA+TGG - chr4_1:13162334-13162353 None:intergenic 25.0%
! TATTTGGTATATTCAAGAAG+AGG - chr4_1:13162437-13162456 None:intergenic 25.0%
! GAGTATATGAATTGAGAATA+AGG - chr4_1:13162488-13162507 None:intergenic 25.0%
!! GAAGTAACAAAATTTTGTGT+TGG - chr4_1:13162769-13162788 None:intergenic 25.0%
! TTACTGAAGTTATGATGTAA+AGG - chr4_1:13163077-13163096 None:intergenic 25.0%
!!! AAACTATGGTTTTAGTTACA+TGG + chr4_1:13163139-13163158 Msa0536280:CDS 25.0%
!!! AACTATGGTTTTAGTTACAT+GGG + chr4_1:13163140-13163159 Msa0536280:CDS 25.0%
!! AATTTTATCTTCAAGTGGTT+TGG + chr4_1:13163202-13163221 Msa0536280:CDS 25.0%
!!! ATTTCCTTTTTTGGCTAATT+TGG + chr4_1:13163268-13163287 Msa0536280:CDS 25.0%
! TTTGAACATTTCCTTCAAAA+GGG - chr4_1:13163316-13163335 None:intergenic 25.0%
!! TTTTGAACATTTCCTTCAAA+AGG - chr4_1:13163317-13163336 None:intergenic 25.0%
! AATCATGAAATGATAACTAG+TGG + chr4_1:13163335-13163354 Msa0536280:CDS 25.0%
! AAATGGAAGATAGTATCAAT+AGG + chr4_1:13163420-13163439 Msa0536280:CDS 25.0%
! AATGGAAGATAGTATCAATA+GGG + chr4_1:13163421-13163440 Msa0536280:CDS 25.0%
! ACACTATAAAATTCTACATC+TGG - chr4_1:13163592-13163611 None:intergenic 25.0%
! TCCATTCAAAATAGATGAAT+TGG + chr4_1:13163678-13163697 Msa0536280:three_prime_UTR 25.0%
!!! ACCAATTCATCTATTTTGAA+TGG - chr4_1:13163682-13163701 None:intergenic 25.0%
! TCAAAATAGATGAATTGGTA+AGG + chr4_1:13163683-13163702 Msa0536280:three_prime_UTR 25.0%
! CAAAATAGATGAATTGGTAA+GGG + chr4_1:13163684-13163703 Msa0536280:three_prime_UTR 25.0%
! AAATTCAAAGAGAGAAAACA+TGG + chr4_1:13162233-13162252 Msa0536280:exon 25.0%
! ACAGGTAAATATAATTAGCA+AGG + chr4_1:13162305-13162324 Msa0536280:intron 25.0%
! AAAGCAAGAACCAAATTAAA+TGG - chr4_1:13162334-13162353 None:intergenic 25.0%
! TATTTGGTATATTCAAGAAG+AGG - chr4_1:13162437-13162456 None:intergenic 25.0%
! GAGTATATGAATTGAGAATA+AGG - chr4_1:13162488-13162507 None:intergenic 25.0%
!! GAAGTAACAAAATTTTGTGT+TGG - chr4_1:13162769-13162788 None:intergenic 25.0%
! TTACTGAAGTTATGATGTAA+AGG - chr4_1:13163077-13163096 None:intergenic 25.0%
!!! AAACTATGGTTTTAGTTACA+TGG + chr4_1:13163139-13163158 Msa0536280:CDS 25.0%
!!! AACTATGGTTTTAGTTACAT+GGG + chr4_1:13163140-13163159 Msa0536280:CDS 25.0%
!! AATTTTATCTTCAAGTGGTT+TGG + chr4_1:13163202-13163221 Msa0536280:CDS 25.0%
!!! ATTTCCTTTTTTGGCTAATT+TGG + chr4_1:13163268-13163287 Msa0536280:CDS 25.0%
! TTTGAACATTTCCTTCAAAA+GGG - chr4_1:13163316-13163335 None:intergenic 25.0%
!! TTTTGAACATTTCCTTCAAA+AGG - chr4_1:13163317-13163336 None:intergenic 25.0%
! AATCATGAAATGATAACTAG+TGG + chr4_1:13163335-13163354 Msa0536280:CDS 25.0%
! AAATGGAAGATAGTATCAAT+AGG + chr4_1:13163420-13163439 Msa0536280:CDS 25.0%
! AATGGAAGATAGTATCAATA+GGG + chr4_1:13163421-13163440 Msa0536280:CDS 25.0%
! ACACTATAAAATTCTACATC+TGG - chr4_1:13163592-13163611 None:intergenic 25.0%
! TCCATTCAAAATAGATGAAT+TGG + chr4_1:13163678-13163697 Msa0536280:three_prime_UTR 25.0%
!!! ACCAATTCATCTATTTTGAA+TGG - chr4_1:13163682-13163701 None:intergenic 25.0%
! TCAAAATAGATGAATTGGTA+AGG + chr4_1:13163683-13163702 Msa0536280:three_prime_UTR 25.0%
! CAAAATAGATGAATTGGTAA+GGG + chr4_1:13163684-13163703 Msa0536280:three_prime_UTR 25.0%
GCAAGAAAGAAATTAACAAG+TGG - chr4_1:13162105-13162124 None:intergenic 30.0%
TCTTCACTATTATCACCTAA+AGG + chr4_1:13162205-13162224 Msa0536280:five_prime_UTR 30.0%
AGCAAGGTTTCCATTTAATT+TGG + chr4_1:13162321-13162340 Msa0536280:intron 30.0%
!! CTTTTGTTTCTTTGTCCAAA+AGG + chr4_1:13162350-13162369 Msa0536280:intron 30.0%
ATTGAGAATAAGGGAAGAAA+GGG - chr4_1:13162478-13162497 None:intergenic 30.0%
AATTGAGAATAAGGGAAGAA+AGG - chr4_1:13162479-13162498 None:intergenic 30.0%
!!! ACAGCATCAATTTCCTTTTT+TGG + chr4_1:13163259-13163278 Msa0536280:CDS 30.0%
!! AGTAATTTGTACCCTTTTGA+AGG + chr4_1:13163302-13163321 Msa0536280:CDS 30.0%
ATGGAAGATAGTATCAATAG+GGG + chr4_1:13163422-13163441 Msa0536280:CDS 30.0%
GGAAACAATAACAGTAATCA+AGG + chr4_1:13163464-13163483 Msa0536280:CDS 30.0%
! ATCAAGGAAGTGAACAATTT+TGG + chr4_1:13163480-13163499 Msa0536280:CDS 30.0%
TTAGGTTTCTTTGTATGAGA+AGG + chr4_1:13163818-13163837 Msa0536280:three_prime_UTR 30.0%
TAGTAACATTGTGAGTTCAA+AGG + chr4_1:13163860-13163879 Msa0536280:three_prime_UTR 30.0%
GCAAGAAAGAAATTAACAAG+TGG - chr4_1:13162105-13162124 None:intergenic 30.0%
TCTTCACTATTATCACCTAA+AGG + chr4_1:13162205-13162224 Msa0536280:five_prime_UTR 30.0%
AGCAAGGTTTCCATTTAATT+TGG + chr4_1:13162321-13162340 Msa0536280:intron 30.0%
!! CTTTTGTTTCTTTGTCCAAA+AGG + chr4_1:13162350-13162369 Msa0536280:intron 30.0%
ATTGAGAATAAGGGAAGAAA+GGG - chr4_1:13162478-13162497 None:intergenic 30.0%
AATTGAGAATAAGGGAAGAA+AGG - chr4_1:13162479-13162498 None:intergenic 30.0%
!!! ACAGCATCAATTTCCTTTTT+TGG + chr4_1:13163259-13163278 Msa0536280:CDS 30.0%
!! AGTAATTTGTACCCTTTTGA+AGG + chr4_1:13163302-13163321 Msa0536280:CDS 30.0%
ATGGAAGATAGTATCAATAG+GGG + chr4_1:13163422-13163441 Msa0536280:CDS 30.0%
GGAAACAATAACAGTAATCA+AGG + chr4_1:13163464-13163483 Msa0536280:CDS 30.0%
! ATCAAGGAAGTGAACAATTT+TGG + chr4_1:13163480-13163499 Msa0536280:CDS 30.0%
TTAGGTTTCTTTGTATGAGA+AGG + chr4_1:13163818-13163837 Msa0536280:three_prime_UTR 30.0%
TAGTAACATTGTGAGTTCAA+AGG + chr4_1:13163860-13163879 Msa0536280:three_prime_UTR 30.0%
AGTGGTTATGAATGTTTGAG+AGG - chr4_1:13162087-13162106 None:intergenic 35.0%
TGAAGAGAATCACATCAACA+AGG - chr4_1:13162191-13162210 None:intergenic 35.0%
TCAAGCAAAAGTAGCAACAA+TGG + chr4_1:13162906-13162925 Msa0536280:CDS 35.0%
! AGAGTGGATATTGTTATTGG+AGG - chr4_1:13163000-13163019 None:intergenic 35.0%
GGAAGAGTGGATATTGTTAT+TGG - chr4_1:13163003-13163022 None:intergenic 35.0%
AGGTGTAAGGCCTAATATAT+CGG - chr4_1:13163027-13163046 None:intergenic 35.0%
! ATGATGACATTTGAGGTGTA+AGG - chr4_1:13163040-13163059 None:intergenic 35.0%
AACCTCAATGATGACATTTG+AGG - chr4_1:13163047-13163066 None:intergenic 35.0%
! GGAGATTTAGGGTTAAACTA+TGG + chr4_1:13163125-13163144 Msa0536280:CDS 35.0%
!!! TATGGTTTTAGTTACATGGG+AGG + chr4_1:13163143-13163162 Msa0536280:CDS 35.0%
! TGTTGATGAGTCATTGACAT+TGG - chr4_1:13163242-13163261 None:intergenic 35.0%
!!! TCCTTTTTTGGCTAATTTGG+AGG + chr4_1:13163271-13163290 Msa0536280:CDS 35.0%
!!! CCTTTTTTGGCTAATTTGGA+GGG + chr4_1:13163272-13163291 Msa0536280:CDS 35.0%
CATGAAATGATAACTAGTGG+TGG + chr4_1:13163338-13163357 Msa0536280:CDS 35.0%
! CCAGAAGTTGAAATCACTTT+TGG - chr4_1:13163374-13163393 None:intergenic 35.0%
CCAAAAGTGATTTCAACTTC+TGG + chr4_1:13163371-13163390 Msa0536280:CDS 35.0%
! TCAACTTGCTTCTGTGAAAA+TGG + chr4_1:13163403-13163422 Msa0536280:CDS 35.0%
! TAGTATCAATAGGGGCTTTT+TGG + chr4_1:13163430-13163449 Msa0536280:CDS 35.0%
! AGTATCAATAGGGGCTTTTT+GGG + chr4_1:13163431-13163450 Msa0536280:CDS 35.0%
AATTGGACTGATCATGTTTC+TGG + chr4_1:13163536-13163555 Msa0536280:CDS 35.0%
TTTGTGTGAAGTGAAGCTTA+TGG + chr4_1:13163612-13163631 Msa0536280:three_prime_UTR 35.0%
! TGAAGTGAAGCTTATGGTTT+TGG + chr4_1:13163618-13163637 Msa0536280:three_prime_UTR 35.0%
!!! AAGCTTATGGTTTTGGTTAG+TGG + chr4_1:13163625-13163644 Msa0536280:three_prime_UTR 35.0%
ATGAATTGGTAAGGGATTTG+AGG + chr4_1:13163692-13163711 Msa0536280:three_prime_UTR 35.0%
TTAGATCAACTGAAAACCCT+AGG + chr4_1:13163725-13163744 Msa0536280:three_prime_UTR 35.0%
TAGATCAACTGAAAACCCTA+GGG + chr4_1:13163726-13163745 Msa0536280:three_prime_UTR 35.0%
GTTTCTTTGTATGAGAAGGT+TGG + chr4_1:13163822-13163841 Msa0536280:three_prime_UTR 35.0%
ACATTGTGAGTTCAAAGGAA+TGG + chr4_1:13163865-13163884 Msa0536280:three_prime_UTR 35.0%
AGTGGTTATGAATGTTTGAG+AGG - chr4_1:13162087-13162106 None:intergenic 35.0%
TGAAGAGAATCACATCAACA+AGG - chr4_1:13162191-13162210 None:intergenic 35.0%
TCAAGCAAAAGTAGCAACAA+TGG + chr4_1:13162906-13162925 Msa0536280:CDS 35.0%
! AGAGTGGATATTGTTATTGG+AGG - chr4_1:13163000-13163019 None:intergenic 35.0%
GGAAGAGTGGATATTGTTAT+TGG - chr4_1:13163003-13163022 None:intergenic 35.0%
AGGTGTAAGGCCTAATATAT+CGG - chr4_1:13163027-13163046 None:intergenic 35.0%
! ATGATGACATTTGAGGTGTA+AGG - chr4_1:13163040-13163059 None:intergenic 35.0%
AACCTCAATGATGACATTTG+AGG - chr4_1:13163047-13163066 None:intergenic 35.0%
! GGAGATTTAGGGTTAAACTA+TGG + chr4_1:13163125-13163144 Msa0536280:CDS 35.0%
!!! TATGGTTTTAGTTACATGGG+AGG + chr4_1:13163143-13163162 Msa0536280:CDS 35.0%
! TGTTGATGAGTCATTGACAT+TGG - chr4_1:13163242-13163261 None:intergenic 35.0%
!!! TCCTTTTTTGGCTAATTTGG+AGG + chr4_1:13163271-13163290 Msa0536280:CDS 35.0%
!!! CCTTTTTTGGCTAATTTGGA+GGG + chr4_1:13163272-13163291 Msa0536280:CDS 35.0%
CATGAAATGATAACTAGTGG+TGG + chr4_1:13163338-13163357 Msa0536280:CDS 35.0%
! CCAGAAGTTGAAATCACTTT+TGG - chr4_1:13163374-13163393 None:intergenic 35.0%
CCAAAAGTGATTTCAACTTC+TGG + chr4_1:13163371-13163390 Msa0536280:CDS 35.0%
! TCAACTTGCTTCTGTGAAAA+TGG + chr4_1:13163403-13163422 Msa0536280:CDS 35.0%
! TAGTATCAATAGGGGCTTTT+TGG + chr4_1:13163430-13163449 Msa0536280:CDS 35.0%
! AGTATCAATAGGGGCTTTTT+GGG + chr4_1:13163431-13163450 Msa0536280:CDS 35.0%
AATTGGACTGATCATGTTTC+TGG + chr4_1:13163536-13163555 Msa0536280:CDS 35.0%
TTTGTGTGAAGTGAAGCTTA+TGG + chr4_1:13163612-13163631 Msa0536280:three_prime_UTR 35.0%
! TGAAGTGAAGCTTATGGTTT+TGG + chr4_1:13163618-13163637 Msa0536280:three_prime_UTR 35.0%
!!! AAGCTTATGGTTTTGGTTAG+TGG + chr4_1:13163625-13163644 Msa0536280:three_prime_UTR 35.0%
ATGAATTGGTAAGGGATTTG+AGG + chr4_1:13163692-13163711 Msa0536280:three_prime_UTR 35.0%
TTAGATCAACTGAAAACCCT+AGG + chr4_1:13163725-13163744 Msa0536280:three_prime_UTR 35.0%
TAGATCAACTGAAAACCCTA+GGG + chr4_1:13163726-13163745 Msa0536280:three_prime_UTR 35.0%
GTTTCTTTGTATGAGAAGGT+TGG + chr4_1:13163822-13163841 Msa0536280:three_prime_UTR 35.0%
ACATTGTGAGTTCAAAGGAA+TGG + chr4_1:13163865-13163884 Msa0536280:three_prime_UTR 35.0%
GAGTGTCTATGTGTTTGTGT+TGG - chr4_1:13162155-13162174 None:intergenic 40.0%
ATCAAGATAAGCTGCTGGTA+TGG - chr4_1:13162268-13162287 None:intergenic 40.0%
! TGCTTGATCTCTTGTTTCTC+CGG - chr4_1:13162893-13162912 None:intergenic 40.0%
TGGAAACTCAACAAAGTCTC+CGG + chr4_1:13162926-13162945 Msa0536280:CDS 40.0%
TGTAAGGCCTAATATATCGG+CGG - chr4_1:13163024-13163043 None:intergenic 40.0%
CACCTCAAATGTCATCATTG+AGG + chr4_1:13163042-13163061 Msa0536280:CDS 40.0%
AACCCTAATGATTTCGTCGT+CGG + chr4_1:13163095-13163114 Msa0536280:CDS 40.0%
TTTAGTTACATGGGAGGAGT+AGG + chr4_1:13163149-13163168 Msa0536280:CDS 40.0%
CCCTCCAAATTAGCCAAAAA+AGG - chr4_1:13163275-13163294 None:intergenic 40.0%
!! TAACTAGTGGTGGATATGTG+AGG + chr4_1:13163348-13163367 Msa0536280:CDS 40.0%
! TGGAATAGTGCTGTTGTTAC+TGG + chr4_1:13163500-13163519 Msa0536280:CDS 40.0%
CTGGTAATTCTGCAGCTAAT+TGG + chr4_1:13163519-13163538 Msa0536280:CDS 40.0%
GAGTGTCTATGTGTTTGTGT+TGG - chr4_1:13162155-13162174 None:intergenic 40.0%
ATCAAGATAAGCTGCTGGTA+TGG - chr4_1:13162268-13162287 None:intergenic 40.0%
! TGCTTGATCTCTTGTTTCTC+CGG - chr4_1:13162893-13162912 None:intergenic 40.0%
TGGAAACTCAACAAAGTCTC+CGG + chr4_1:13162926-13162945 Msa0536280:CDS 40.0%
TGTAAGGCCTAATATATCGG+CGG - chr4_1:13163024-13163043 None:intergenic 40.0%
CACCTCAAATGTCATCATTG+AGG + chr4_1:13163042-13163061 Msa0536280:CDS 40.0%
AACCCTAATGATTTCGTCGT+CGG + chr4_1:13163095-13163114 Msa0536280:CDS 40.0%
TTTAGTTACATGGGAGGAGT+AGG + chr4_1:13163149-13163168 Msa0536280:CDS 40.0%
CCCTCCAAATTAGCCAAAAA+AGG - chr4_1:13163275-13163294 None:intergenic 40.0%
!! TAACTAGTGGTGGATATGTG+AGG + chr4_1:13163348-13163367 Msa0536280:CDS 40.0%
! TGGAATAGTGCTGTTGTTAC+TGG + chr4_1:13163500-13163519 Msa0536280:CDS 40.0%
CTGGTAATTCTGCAGCTAAT+TGG + chr4_1:13163519-13163538 Msa0536280:CDS 40.0%
CTTATCTTGATGCAGCCAAC+TGG + chr4_1:13162277-13162296 Msa0536280:CDS 45.0%
ATTTACCTGTTGCTGCCAGT+TGG - chr4_1:13162295-13162314 None:intergenic 45.0%
CAGAATCATCATCAGCAACC+AGG + chr4_1:13162558-13162577 Msa0536280:CDS 45.0%
CATCATCAGCAACCAGGAAA+CGG + chr4_1:13162564-13162583 Msa0536280:CDS 45.0%
CTGAAGCAGTTGTTGAGAGA+CGG - chr4_1:13162595-13162614 None:intergenic 45.0%
!! GTGTTGGTTGATTCACAACG+TGG - chr4_1:13162753-13162772 None:intergenic 45.0%
!! CAAGTCTTGCAGAAGTGTCT+GGG - chr4_1:13162813-13162832 None:intergenic 45.0%
ACTTCTGCAAGACTTGCAGA+AGG + chr4_1:13162817-13162836 Msa0536280:CDS 45.0%
CTAATATATCGGCGGAAGAG+TGG - chr4_1:13163016-13163035 None:intergenic 45.0%
CACTCTTCCGCCGATATATT+AGG + chr4_1:13163014-13163033 Msa0536280:CDS 45.0%
CTCCGACGACGAAATCATTA+GGG - chr4_1:13163100-13163119 None:intergenic 45.0%
ATGGGAGGAGTAGGTGATTT+GGG + chr4_1:13163158-13163177 Msa0536280:CDS 45.0%
!! GGTGATTTGGGAAGTGCTTT+AGG + chr4_1:13163170-13163189 Msa0536280:CDS 45.0%
!! GATTTGGGAAGTGCTTTAGG+AGG + chr4_1:13163173-13163192 Msa0536280:CDS 45.0%
! CTTCAAGTGGTTTGGAGCAA+TGG + chr4_1:13163210-13163229 Msa0536280:CDS 45.0%
!! GGCTTTTTGGGAATTAGCAC+AGG + chr4_1:13163443-13163462 Msa0536280:CDS 45.0%
CTTATCTTGATGCAGCCAAC+TGG + chr4_1:13162277-13162296 Msa0536280:CDS 45.0%
ATTTACCTGTTGCTGCCAGT+TGG - chr4_1:13162295-13162314 None:intergenic 45.0%
CAGAATCATCATCAGCAACC+AGG + chr4_1:13162558-13162577 Msa0536280:CDS 45.0%
CATCATCAGCAACCAGGAAA+CGG + chr4_1:13162564-13162583 Msa0536280:CDS 45.0%
CTGAAGCAGTTGTTGAGAGA+CGG - chr4_1:13162595-13162614 None:intergenic 45.0%
!! GTGTTGGTTGATTCACAACG+TGG - chr4_1:13162753-13162772 None:intergenic 45.0%
!! CAAGTCTTGCAGAAGTGTCT+GGG - chr4_1:13162813-13162832 None:intergenic 45.0%
ACTTCTGCAAGACTTGCAGA+AGG + chr4_1:13162817-13162836 Msa0536280:CDS 45.0%
CTAATATATCGGCGGAAGAG+TGG - chr4_1:13163016-13163035 None:intergenic 45.0%
CACTCTTCCGCCGATATATT+AGG + chr4_1:13163014-13163033 Msa0536280:CDS 45.0%
CTCCGACGACGAAATCATTA+GGG - chr4_1:13163100-13163119 None:intergenic 45.0%
ATGGGAGGAGTAGGTGATTT+GGG + chr4_1:13163158-13163177 Msa0536280:CDS 45.0%
!! GGTGATTTGGGAAGTGCTTT+AGG + chr4_1:13163170-13163189 Msa0536280:CDS 45.0%
!! GATTTGGGAAGTGCTTTAGG+AGG + chr4_1:13163173-13163192 Msa0536280:CDS 45.0%
! CTTCAAGTGGTTTGGAGCAA+TGG + chr4_1:13163210-13163229 Msa0536280:CDS 45.0%
!! GGCTTTTTGGGAATTAGCAC+AGG + chr4_1:13163443-13163462 Msa0536280:CDS 45.0%
GCTGCATCAAGATAAGCTGC+TGG - chr4_1:13162273-13162292 None:intergenic 50.0%
TGAGGTTGAGACTGTGACTG+TGG - chr4_1:13162636-13162655 None:intergenic 50.0%
CAGTCACAGTCTCAACCTCA+TGG + chr4_1:13162636-13162655 Msa0536280:CDS 50.0%
TCACAGTCTCAACCTCATGG+AGG + chr4_1:13162639-13162658 Msa0536280:CDS 50.0%
!! GCAAGTCTTGCAGAAGTGTC+TGG - chr4_1:13162814-13162833 None:intergenic 50.0%
! GCAAGACTTGCAGAAGGTAC+TGG + chr4_1:13162823-13162842 Msa0536280:CDS 50.0%
!! TGCAGAAGGTACTGGACAAG+AGG + chr4_1:13162831-13162850 Msa0536280:CDS 50.0%
!! AGAAGGTACTGGACAAGAGG+CGG + chr4_1:13162834-13162853 Msa0536280:CDS 50.0%
TTGAACTAGCACTCCCCGTT+TGG - chr4_1:13162965-13162984 None:intergenic 50.0%
CCTCCGACGACGAAATCATT+AGG - chr4_1:13163101-13163120 None:intergenic 50.0%
CCTAATGATTTCGTCGTCGG+AGG + chr4_1:13163098-13163117 Msa0536280:CDS 50.0%
AATGATTTCGTCGTCGGAGG+AGG + chr4_1:13163101-13163120 Msa0536280:CDS 50.0%
TCGGAGGAGGAGGAGATTTA+GGG + chr4_1:13163114-13163133 Msa0536280:CDS 50.0%
CATGGGAGGAGTAGGTGATT+TGG + chr4_1:13163157-13163176 Msa0536280:CDS 50.0%
! CAAGTGGTTTGGAGCAATGG+AGG + chr4_1:13163213-13163232 Msa0536280:CDS 50.0%
GCTGCATCAAGATAAGCTGC+TGG - chr4_1:13162273-13162292 None:intergenic 50.0%
TGAGGTTGAGACTGTGACTG+TGG - chr4_1:13162636-13162655 None:intergenic 50.0%
CAGTCACAGTCTCAACCTCA+TGG + chr4_1:13162636-13162655 Msa0536280:CDS 50.0%
TCACAGTCTCAACCTCATGG+AGG + chr4_1:13162639-13162658 Msa0536280:CDS 50.0%
!! GCAAGTCTTGCAGAAGTGTC+TGG - chr4_1:13162814-13162833 None:intergenic 50.0%
! GCAAGACTTGCAGAAGGTAC+TGG + chr4_1:13162823-13162842 Msa0536280:CDS 50.0%
!! TGCAGAAGGTACTGGACAAG+AGG + chr4_1:13162831-13162850 Msa0536280:CDS 50.0%
!! AGAAGGTACTGGACAAGAGG+CGG + chr4_1:13162834-13162853 Msa0536280:CDS 50.0%
TTGAACTAGCACTCCCCGTT+TGG - chr4_1:13162965-13162984 None:intergenic 50.0%
CCTCCGACGACGAAATCATT+AGG - chr4_1:13163101-13163120 None:intergenic 50.0%
CCTAATGATTTCGTCGTCGG+AGG + chr4_1:13163098-13163117 Msa0536280:CDS 50.0%
AATGATTTCGTCGTCGGAGG+AGG + chr4_1:13163101-13163120 Msa0536280:CDS 50.0%
TCGGAGGAGGAGGAGATTTA+GGG + chr4_1:13163114-13163133 Msa0536280:CDS 50.0%
CATGGGAGGAGTAGGTGATT+TGG + chr4_1:13163157-13163176 Msa0536280:CDS 50.0%
! CAAGTGGTTTGGAGCAATGG+AGG + chr4_1:13163213-13163232 Msa0536280:CDS 50.0%
CATCAGCAACCAGGAAACGG+CGG + chr4_1:13162567-13162586 Msa0536280:CDS 55.0%
TGAGACTGTGACTGTGGTGG+TGG - chr4_1:13162630-13162649 None:intergenic 55.0%
GGTTGAGACTGTGACTGTGG+TGG - chr4_1:13162633-13162652 None:intergenic 55.0%
CAGTCTCAACCTCATGGAGG+AGG + chr4_1:13162642-13162661 Msa0536280:CDS 55.0%
!! GAGGATCCACCGGCTCAATT+AGG + chr4_1:13162661-13162680 Msa0536280:CDS 55.0%
CGATCCTGGCCTAATTGAGC+CGG - chr4_1:13162673-13162692 None:intergenic 55.0%
GCCAGGATCGATGTCCGATA+GGG + chr4_1:13162683-13162702 Msa0536280:CDS 55.0%
GATCGATGTCCGATAGGGCA+AGG + chr4_1:13162688-13162707 Msa0536280:CDS 55.0%
GATGTCCGATAGGGCAAGGA+TGG + chr4_1:13162692-13162711 Msa0536280:CDS 55.0%
GTTCGCCATCCTTGCCCTAT+CGG - chr4_1:13162700-13162719 None:intergenic 55.0%
GATGGCGAACATGCCTATGC+CGG + chr4_1:13162710-13162729 Msa0536280:CDS 55.0%
GGACATTTCAGTGCTGCCTC+CGG - chr4_1:13162732-13162751 None:intergenic 55.0%
!! GCTCTAAGGAATGTCCCGGT+TGG + chr4_1:13162858-13162877 Msa0536280:CDS 55.0%
CTAAGGAATGTCCCGGTTGG+TGG + chr4_1:13162861-13162880 Msa0536280:CDS 55.0%
AACTAGCACTCCCCGTTTGG+CGG - chr4_1:13162962-13162981 None:intergenic 55.0%
GTCGGAGGAGGAGGAGATTT+AGG + chr4_1:13163113-13163132 Msa0536280:CDS 55.0%
CATCAGCAACCAGGAAACGG+CGG + chr4_1:13162567-13162586 Msa0536280:CDS 55.0%
TGAGACTGTGACTGTGGTGG+TGG - chr4_1:13162630-13162649 None:intergenic 55.0%
GGTTGAGACTGTGACTGTGG+TGG - chr4_1:13162633-13162652 None:intergenic 55.0%
CAGTCTCAACCTCATGGAGG+AGG + chr4_1:13162642-13162661 Msa0536280:CDS 55.0%
!! GAGGATCCACCGGCTCAATT+AGG + chr4_1:13162661-13162680 Msa0536280:CDS 55.0%
CGATCCTGGCCTAATTGAGC+CGG - chr4_1:13162673-13162692 None:intergenic 55.0%
GCCAGGATCGATGTCCGATA+GGG + chr4_1:13162683-13162702 Msa0536280:CDS 55.0%
GATCGATGTCCGATAGGGCA+AGG + chr4_1:13162688-13162707 Msa0536280:CDS 55.0%
GATGTCCGATAGGGCAAGGA+TGG + chr4_1:13162692-13162711 Msa0536280:CDS 55.0%
GTTCGCCATCCTTGCCCTAT+CGG - chr4_1:13162700-13162719 None:intergenic 55.0%
GATGGCGAACATGCCTATGC+CGG + chr4_1:13162710-13162729 Msa0536280:CDS 55.0%
GGACATTTCAGTGCTGCCTC+CGG - chr4_1:13162732-13162751 None:intergenic 55.0%
!! GCTCTAAGGAATGTCCCGGT+TGG + chr4_1:13162858-13162877 Msa0536280:CDS 55.0%
CTAAGGAATGTCCCGGTTGG+TGG + chr4_1:13162861-13162880 Msa0536280:CDS 55.0%
AACTAGCACTCCCCGTTTGG+CGG - chr4_1:13162962-13162981 None:intergenic 55.0%
GTCGGAGGAGGAGGAGATTT+AGG + chr4_1:13163113-13163132 Msa0536280:CDS 55.0%
TGCAGCCAACTGGCAGCAAC+AGG + chr4_1:13162287-13162306 Msa0536280:CDS 60.0%
!! TGTGACTGTGGTGGTGGTGG+TGG - chr4_1:13162624-13162643 None:intergenic 60.0%
!! GACTGTGACTGTGGTGGTGG+TGG - chr4_1:13162627-13162646 None:intergenic 60.0%
CCTCATGGAGGAGGATCCAC+CGG + chr4_1:13162651-13162670 Msa0536280:CDS 60.0%
!! TCCACCGGCTCAATTAGGCC+AGG + chr4_1:13162666-13162685 Msa0536280:CDS 60.0%
TCCTGGCCTAATTGAGCCGG+TGG - chr4_1:13162670-13162689 None:intergenic 60.0%
GGCCAGGATCGATGTCCGAT+AGG + chr4_1:13162682-13162701 Msa0536280:CDS 60.0%
GCCCTATCGGACATCGATCC+TGG - chr4_1:13162687-13162706 None:intergenic 60.0%
TTCAGTGCTGCCTCCGGCAT+AGG - chr4_1:13162726-13162745 None:intergenic 60.0%
!! CGGCGCTCTAAGGAATGTCC+CGG + chr4_1:13162854-13162873 Msa0536280:CDS 60.0%
!! AGGAATGTCCCGGTTGGTGG+AGG + chr4_1:13162864-13162883 Msa0536280:CDS 60.0%
GTTTGGCGGTCAGAGCTAGC+CGG - chr4_1:13162948-13162967 None:intergenic 60.0%
!! GGCTAGCTCTGACCGCCAAA+CGG + chr4_1:13162947-13162966 Msa0536280:CDS 60.0%
!! GCTAGCTCTGACCGCCAAAC+GGG + chr4_1:13162948-13162967 Msa0536280:CDS 60.0%
!! CTAGCTCTGACCGCCAAACG+GGG + chr4_1:13162949-13162968 Msa0536280:CDS 60.0%
GATTTCGTCGTCGGAGGAGG+AGG + chr4_1:13163104-13163123 Msa0536280:CDS 60.0%
TGCAGCCAACTGGCAGCAAC+AGG + chr4_1:13162287-13162306 Msa0536280:CDS 60.0%
!! TGTGACTGTGGTGGTGGTGG+TGG - chr4_1:13162624-13162643 None:intergenic 60.0%
!! GACTGTGACTGTGGTGGTGG+TGG - chr4_1:13162627-13162646 None:intergenic 60.0%
CCTCATGGAGGAGGATCCAC+CGG + chr4_1:13162651-13162670 Msa0536280:CDS 60.0%
!! TCCACCGGCTCAATTAGGCC+AGG + chr4_1:13162666-13162685 Msa0536280:CDS 60.0%
TCCTGGCCTAATTGAGCCGG+TGG - chr4_1:13162670-13162689 None:intergenic 60.0%
GGCCAGGATCGATGTCCGAT+AGG + chr4_1:13162682-13162701 Msa0536280:CDS 60.0%
GCCCTATCGGACATCGATCC+TGG - chr4_1:13162687-13162706 None:intergenic 60.0%
TTCAGTGCTGCCTCCGGCAT+AGG - chr4_1:13162726-13162745 None:intergenic 60.0%
!! CGGCGCTCTAAGGAATGTCC+CGG + chr4_1:13162854-13162873 Msa0536280:CDS 60.0%
!! AGGAATGTCCCGGTTGGTGG+AGG + chr4_1:13162864-13162883 Msa0536280:CDS 60.0%
GTTTGGCGGTCAGAGCTAGC+CGG - chr4_1:13162948-13162967 None:intergenic 60.0%
!! GGCTAGCTCTGACCGCCAAA+CGG + chr4_1:13162947-13162966 Msa0536280:CDS 60.0%
!! GCTAGCTCTGACCGCCAAAC+GGG + chr4_1:13162948-13162967 Msa0536280:CDS 60.0%
!! CTAGCTCTGACCGCCAAACG+GGG + chr4_1:13162949-13162968 Msa0536280:CDS 60.0%
GATTTCGTCGTCGGAGGAGG+AGG + chr4_1:13163104-13163123 Msa0536280:CDS 60.0%
!! GACTGTGGTGGTGGTGGTGG+TGG - chr4_1:13162621-13162640 None:intergenic 65.0%
CCGGTGGATCCTCCTCCATG+AGG - chr4_1:13162654-13162673 None:intergenic 65.0%
GGCGAACATGCCTATGCCGG+AGG + chr4_1:13162713-13162732 Msa0536280:CDS 65.0%
GGACAAGAGGCGGCGCTCTA+AGG + chr4_1:13162844-13162863 Msa0536280:CDS 65.0%
!! TCCCGGTTGGTGGAGGCTTC+CGG + chr4_1:13162871-13162890 Msa0536280:CDS 65.0%
TCCGGAAGCCTCCACCAACC+GGG - chr4_1:13162875-13162894 None:intergenic 65.0%
CTCCGGAAGCCTCCACCAAC+CGG - chr4_1:13162876-13162895 None:intergenic 65.0%
!! GACTGTGGTGGTGGTGGTGG+TGG - chr4_1:13162621-13162640 None:intergenic 65.0%
CCGGTGGATCCTCCTCCATG+AGG - chr4_1:13162654-13162673 None:intergenic 65.0%
GGCGAACATGCCTATGCCGG+AGG + chr4_1:13162713-13162732 Msa0536280:CDS 65.0%
GGACAAGAGGCGGCGCTCTA+AGG + chr4_1:13162844-13162863 Msa0536280:CDS 65.0%
!! TCCCGGTTGGTGGAGGCTTC+CGG + chr4_1:13162871-13162890 Msa0536280:CDS 65.0%
TCCGGAAGCCTCCACCAACC+GGG - chr4_1:13162875-13162894 None:intergenic 65.0%
CTCCGGAAGCCTCCACCAAC+CGG - chr4_1:13162876-13162895 None:intergenic 65.0%
GAGACGGAGCCGCCGTTTCC+TGG - chr4_1:13162579-13162598 None:intergenic 70.0%
GAGACGGAGCCGCCGTTTCC+TGG - chr4_1:13162579-13162598 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 13162068 13163930 13162068 ID=Msa0536280;Name=Msa0536280
chr4_1 mRNA 13162068 13163930 13162068 ID=Msa0536280-mRNA-1;Parent=Msa0536280;Name=Msa0536280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=184|1|1|1|1|1|2|332|366
chr4_1 exon 13162068 13162308 13162068 ID=Msa0536280-mRNA-1:exon:4165;Parent=Msa0536280-mRNA-1
chr4_1 exon 13162555 13163930 13162555 ID=Msa0536280-mRNA-1:exon:4166;Parent=Msa0536280-mRNA-1
chr4_1 five_prime_UTR 13162068 13162251 13162068 ID=Msa0536280-mRNA-1:five_prime_utr;Parent=Msa0536280-mRNA-1
chr4_1 CDS 13162252 13162308 13162252 ID=Msa0536280-mRNA-1:cds;Parent=Msa0536280-mRNA-1
chr4_1 CDS 13162555 13163598 13162555 ID=Msa0536280-mRNA-1:cds;Parent=Msa0536280-mRNA-1
chr4_1 three_prime_UTR 13163599 13163930 13163599 ID=Msa0536280-mRNA-1:three_prime_utr;Parent=Msa0536280-mRNA-1
Gene Sequence

>Msa0536280

ATGGTTTTTACTTCCATACCAGCAGCTTATCTTGATGCAGCCAACTGGCAGCAACAGCAACAGAATCATCATCAGCAACCAGGAAACGGCGGCTCCGTCTCTCAACAACTGCTTCAGACACCACCACCACCACCACCACAGTCACAGTCTCAACCTCATGGAGGAGGATCCACCGGCTCAATTAGGCCAGGATCGATGTCCGATAGGGCAAGGATGGCGAACATGCCTATGCCGGAGGCAGCACTGAAATGTCCACGTTGTGAATCAACCAACACAAAATTTTGTTACTTCAACAACTACAGTCTCTCTCAGCCCAGACACTTCTGCAAGACTTGCAGAAGGTACTGGACAAGAGGCGGCGCTCTAAGGAATGTCCCGGTTGGTGGAGGCTTCCGGAGAAACAAGAGATCAAGCAAAAGTAGCAACAATGGAAACTCAACAAAGTCTCCGGCTAGCTCTGACCGCCAAACGGGGAGTGCTAGTTCAACAAACTCAATCACCTCCAATAACAATATCCACTCTTCCGCCGATATATTAGGCCTTACACCTCAAATGTCATCATTGAGGTTCATGACACCTTTACATCATAACTTCAGTAACCCTAATGATTTCGTCGTCGGAGGAGGAGGAGATTTAGGGTTAAACTATGGTTTTAGTTACATGGGAGGAGTAGGTGATTTGGGAAGTGCTTTAGGAGGTAATTCAATTTTATCTTCAAGTGGTTTGGAGCAATGGAGGATGCCAATGTCAATGACTCATCAACAGCATCAATTTCCTTTTTTGGCTAATTTGGAGGGTTCAAATAGTAATTTGTACCCTTTTGAAGGAAATGTTCAAAATCATGAAATGATAACTAGTGGTGGATATGTGAGGCCAAAAGTGATTTCAACTTCTGGAATTATGACTCAACTTGCTTCTGTGAAAATGGAAGATAGTATCAATAGGGGCTTTTTGGGAATTAGCACAGGAAACAATAACAGTAATCAAGGAAGTGAACAATTTTGGAATAGTGCTGTTGTTACTGGTAATTCTGCAGCTAATTGGACTGATCATGTTTCTGGTTTTAGCTCTTCTTCTAATACTACTAGTAACCAGATGTAG
Protein sequence

>Msa0536280

MVFTSIPAAYLDAANWQQQQQNHHQQPGNGGSVSQQLLQTPPPPPPQSQSQPHGGGSTGSIRPGSMSDRARMANMPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSSKSSNNGNSTKSPASSDRQTGSASSTNSITSNNNIHSSADILGLTPQMSSLRFMTPLHHNFSNPNDFVVGGGGDLGLNYGFSYMGGVGDLGSALGGNSILSSSGLEQWRMPMSMTHQQHQFPFLANLEGSNSNLYPFEGNVQNHEMITSGGYVRPKVISTSGIMTQLASVKMEDSINRGFLGISTGNNNSNQGSEQFWNSAVVTGNSAANWTDHVSGFSSSSNTTSNQM*