AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0536300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0536300 MtrunA17_Chr4g0010151 97.541 366 7 1 1 366 1 364 0.0 725
Msa0536300 MtrunA17_Chr7g0237921 49.354 387 126 14 1 362 1 342 5.15e-88 269
Msa0536300 MtrunA17_Chr4g0031411 44.509 346 140 14 1 325 1 315 3.86e-67 215
Msa0536300 MtrunA17_Chr2g0328021 39.557 316 117 17 1 310 1 248 5.29e-48 164
Msa0536300 MtrunA17_Chr7g0223311 36.896 393 183 16 1 356 1 365 1.86e-47 165
Msa0536300 MtrunA17_Chr3g0127201 69.737 76 19 1 63 138 12 83 3.61e-32 122
Msa0536300 MtrunA17_Chr2g0326001 80.328 61 12 0 76 136 34 94 3.91e-31 119
Msa0536300 MtrunA17_Chr8g0346551 45.324 139 65 3 69 205 11 140 5.40e-31 118
Msa0536300 MtrunA17_Chr8g0374251 51.351 111 49 2 82 188 68 177 8.06e-30 117
Msa0536300 MtrunA17_Chr5g0411951 81.818 55 10 0 78 132 39 93 2.95e-29 115
Msa0536300 MtrunA17_Chr8g0341671 75.000 68 15 2 74 140 13 79 4.00e-29 112
Msa0536300 MtrunA17_Chr3g0117601 63.855 83 27 2 50 132 32 111 4.61e-29 115
Msa0536300 MtrunA17_Chr4g0030051 81.356 59 10 1 76 134 36 93 5.53e-29 114
Msa0536300 MtrunA17_Chr3g0126201 64.865 74 26 0 63 136 32 105 6.00e-29 114
Msa0536300 MtrunA17_Chr8g0367161 69.841 63 19 0 79 141 29 91 1.69e-28 113
Msa0536300 MtrunA17_Chr8g0374111 54.255 94 32 2 61 153 17 100 1.84e-28 110
Msa0536300 MtrunA17_Chr2g0282511 86.275 51 7 0 81 131 44 94 2.43e-28 112
Msa0536300 MtrunA17_Chr1g0177251 56.250 96 36 1 84 179 14 103 2.26e-27 109
Msa0536300 MtrunA17_Chr2g0308011 86.000 50 7 0 81 130 36 85 3.33e-27 107
Msa0536300 MtrunA17_Chr1g0188851 55.000 80 34 1 59 136 18 97 8.27e-27 107
Msa0536300 MtrunA17_Chr4g0061761 80.769 52 10 0 81 132 39 90 1.08e-26 108
Msa0536300 MtrunA17_Chr2g0282441 66.667 72 19 2 62 133 10 76 2.58e-26 107
Msa0536300 MtrunA17_Chr8g0355261 68.333 60 19 0 78 137 114 173 6.46e-26 107
Msa0536300 MtrunA17_Chr4g0047761 74.138 58 14 1 82 139 72 128 1.50e-25 105
Msa0536300 MtrunA17_Chr6g0453321 67.213 61 20 0 78 138 132 192 1.98e-25 107
Msa0536300 MtrunA17_Chr2g0282051 71.930 57 15 1 80 136 44 99 2.06e-25 103
Msa0536300 MtrunA17_Chr2g0283811 70.175 57 17 0 79 135 44 100 5.11e-25 99.8
Msa0536300 MtrunA17_Chr6g0460721 62.903 62 23 0 75 136 82 143 5.73e-25 103
Msa0536300 MtrunA17_Chr4g0042481 65.079 63 22 0 78 140 118 180 1.04e-24 104
Msa0536300 MtrunA17_Chr5g0417571 45.833 96 49 1 43 138 102 194 2.08e-24 102
Msa0536300 MtrunA17_Chr7g0217581 62.500 64 24 0 75 138 225 288 2.18e-24 104
Msa0536300 MtrunA17_Chr7g0254161 62.295 61 23 0 75 135 94 154 3.00e-24 103
Msa0536300 MtrunA17_Chr3g0092111 63.492 63 23 0 78 140 132 194 3.74e-24 103
Msa0536300 MtrunA17_Chr6g0460731 60.656 61 24 0 75 135 89 149 5.22e-24 101
Msa0536300 MtrunA17_Chr5g0417551 53.247 77 36 0 66 142 111 187 7.91e-23 98.2
Msa0536300 MtrunA17_Chr5g0417561 48.235 85 44 0 58 142 95 179 3.31e-22 96.7
Msa0536300 MtrunA17_Chr5g0417601 45.977 87 44 1 52 135 107 193 5.59e-22 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0536300 AT3G55370.2 38.071 394 162 18 1 353 1 353 3.25e-54 182
Msa0536300 AT3G55370.1 43.243 296 109 14 1 278 1 255 4.82e-54 181
Msa0536300 AT2G37590.1 41.566 332 146 11 1 311 1 305 8.24e-50 170
Msa0536300 AT5G02460.1 39.257 377 142 14 1 315 1 352 2.52e-47 166
Msa0536300 AT3G55370.3 46.531 245 87 13 45 278 89 300 4.63e-47 164
Msa0536300 AT2G28810.1 34.409 372 176 15 1 345 1 331 6.63e-38 139
Msa0536300 AT1G07640.3 50.694 144 65 3 5 142 2 145 5.86e-37 136
Msa0536300 AT5G60200.1 57.407 108 45 1 78 184 51 158 1.76e-36 133
Msa0536300 AT1G07640.2 53.731 134 56 3 15 142 4 137 2.18e-36 135
Msa0536300 AT1G07640.1 70.886 79 23 0 64 142 3 81 4.35e-36 132
Msa0536300 AT2G28810.2 34.593 344 164 12 23 345 11 314 1.24e-35 132
Msa0536300 AT3G45610.1 55.238 105 44 2 78 181 36 138 4.51e-34 126
Msa0536300 AT5G65590.1 38.235 238 102 8 42 249 8 230 6.56e-32 122
Msa0536300 AT1G51700.1 60.000 95 34 3 77 167 27 121 9.62e-31 116
Msa0536300 AT1G28310.1 79.310 58 12 0 82 139 27 84 3.89e-30 117
Msa0536300 AT2G28510.1 81.967 61 11 0 81 141 47 107 4.33e-30 117
Msa0536300 AT1G28310.2 79.310 58 12 0 82 139 51 108 5.41e-30 117
Msa0536300 AT5G60850.1 71.014 69 20 0 69 137 38 106 1.77e-29 115
Msa0536300 AT3G61850.2 75.410 61 15 0 78 138 58 118 7.10e-29 113
Msa0536300 AT3G61850.3 75.410 61 15 0 78 138 58 118 7.10e-29 113
Msa0536300 AT3G61850.1 75.410 61 15 0 78 138 70 130 7.53e-29 114
Msa0536300 AT3G21270.1 84.906 53 8 0 82 134 29 81 8.63e-29 111
Msa0536300 AT3G61850.5 75.410 61 15 0 78 138 58 118 1.03e-28 114
Msa0536300 AT3G61850.4 75.410 61 15 0 78 138 70 130 1.35e-28 114
Msa0536300 AT4G38000.1 73.438 64 16 1 76 138 35 98 4.40e-28 110
Msa0536300 AT3G52440.1 58.140 86 36 0 79 164 22 107 5.69e-28 110
Msa0536300 AT3G52440.2 58.140 86 36 0 79 164 41 126 9.66e-28 110
Msa0536300 AT5G66940.1 48.958 96 38 2 63 147 2 97 3.99e-27 107
Msa0536300 AT1G21340.1 68.750 64 20 0 80 143 36 99 8.82e-27 107
Msa0536300 AT5G62940.1 86.000 50 7 0 83 132 74 123 1.84e-26 108
Msa0536300 AT2G34140.1 51.685 89 40 1 47 135 26 111 2.13e-26 103
Msa0536300 AT3G50410.1 69.492 59 18 0 82 140 30 88 3.30e-26 105
Msa0536300 AT4G00940.1 71.186 59 17 0 78 136 64 122 5.13e-26 106
Msa0536300 AT4G00940.3 71.186 59 17 0 78 136 64 122 5.13e-26 106
Msa0536300 AT4G00940.2 71.186 59 17 0 78 136 64 122 5.13e-26 106
Msa0536300 AT2G46590.1 78.846 52 11 0 78 129 64 115 2.27e-25 105
Msa0536300 AT2G46590.2 78.846 52 11 0 78 129 76 127 2.70e-25 105
Msa0536300 AT4G21050.1 66.129 62 21 0 75 136 17 78 5.66e-25 101
Msa0536300 AT1G29160.1 68.966 58 18 0 78 135 58 115 6.01e-25 100
Msa0536300 AT3G47500.1 64.062 64 23 0 75 138 103 166 1.10e-24 105
Msa0536300 AT1G64620.1 74.545 55 14 0 76 130 43 97 1.38e-24 103
Msa0536300 AT1G26790.1 55.072 69 31 0 67 135 96 164 4.15e-24 102
Msa0536300 AT1G69570.1 62.295 61 23 0 75 135 125 185 6.04e-24 102
Msa0536300 AT5G62430.1 58.209 67 28 0 75 141 47 113 1.24e-23 99.8
Msa0536300 AT5G39660.3 62.903 62 23 0 74 135 130 191 1.43e-23 101
Msa0536300 AT5G39660.1 62.903 62 23 0 74 135 130 191 1.43e-23 101
Msa0536300 AT5G39660.2 62.903 62 23 0 74 135 130 191 1.43e-23 101
Msa0536300 AT1G47655.1 68.333 60 17 1 73 130 18 77 1.98e-23 97.1
Msa0536300 AT4G21040.1 50.562 89 40 1 84 172 27 111 4.57e-22 94.0
Msa0536300 AT4G21080.1 47.674 86 41 1 84 169 27 108 9.33e-21 90.9
Msa0536300 AT4G21030.1 55.932 59 23 1 71 129 13 68 2.96e-14 71.2

Find 123 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGATATTATCAATATTT+TGG 0.080654 4_1:+13220046 Msa0536300:three_prime_UTR
ATCAAGGAAGTGAACAATTT+TGG 0.154411 4_1:+13219643 Msa0536300:CDS
AATTGGACTGATCATGTTTC+TGG 0.157222 4_1:+13219699 Msa0536300:CDS
TCAACTTGCTTCTGTGAAAA+TGG 0.216358 4_1:+13219566 Msa0536300:CDS
GTCGGAGGAGGAGGAGATTT+AGG 0.225483 4_1:+13219276 Msa0536300:CDS
CCAGAAGTTGAAATCACTTT+TGG 0.251474 4_1:-13219534 None:intergenic
GCAAGTCTTGCAGAAGTGTC+TGG 0.259253 4_1:-13218974 None:intergenic
CCAAAAGTGATTTCAACTTC+TGG 0.271253 4_1:+13219534 Msa0536300:CDS
GGTGATTTGGGAAGTGCTTT+AGG 0.279369 4_1:+13219333 Msa0536300:CDS
GGAAGAGTGGATATTGTTAT+TGG 0.289267 4_1:-13219163 None:intergenic
TCCATTCAAAATAGATGAAT+TGG 0.290082 4_1:+13219841 Msa0536300:three_prime_UTR
ATGGGAGGAGTAGGTGATTT+GGG 0.291520 4_1:+13219321 Msa0536300:CDS
GAGACGGAGCCGCCGTTTCC+TGG 0.321013 4_1:-13218739 None:intergenic
CATGGGAGGAGTAGGTGATT+TGG 0.324852 4_1:+13219320 Msa0536300:CDS
TGGAATAGTGCTGTTGTTAC+TGG 0.330687 4_1:+13219663 Msa0536300:CDS
TCCCGGTTGGTGGAGGCTTC+CGG 0.334717 4_1:+13219034 Msa0536300:CDS
CTGGTAATTCTGCAGCTAAT+TGG 0.337179 4_1:+13219682 Msa0536300:CDS
GGACAAGAGGCGGCGCTCTA+AGG 0.351075 4_1:+13219007 Msa0536300:CDS
TGAAGTGAAGCTTATGGTTT+TGG 0.351651 4_1:+13219781 Msa0536300:three_prime_UTR
TCGGAGGAGGAGGAGATTTA+GGG 0.351804 4_1:+13219277 Msa0536300:CDS
CCTCCGACGACGAAATCATT+AGG 0.352853 4_1:-13219261 None:intergenic
CTCCGGAAGCCTCCACCAAC+CGG 0.381217 4_1:-13219036 None:intergenic
GGAGATTTAGGGTTAAACTA+TGG 0.382883 4_1:+13219288 Msa0536300:CDS
CACTCTTCCGCCGATATATT+AGG 0.387275 4_1:+13219177 Msa0536300:CDS
GCCCTATCGGACATCGATCC+TGG 0.393185 4_1:-13218847 None:intergenic
AATGGAAGATAGTATCAATA+GGG 0.409067 4_1:+13219584 Msa0536300:CDS
TGCTTGATCTCTTGTTTCTC+CGG 0.410783 4_1:-13219053 None:intergenic
CTTCAAGTGGTTTGGAGCAA+TGG 0.413375 4_1:+13219373 Msa0536300:CDS
TTGAACTAGCACTCCCCGTT+TGG 0.413567 4_1:-13219125 None:intergenic
AAATGGAAGATAGTATCAAT+AGG 0.414206 4_1:+13219583 Msa0536300:CDS
CTTATCTTGATGCAGCCAAC+TGG 0.417162 4_1:+13218440 Msa0536300:CDS
GAATGTTTGATTTAACTTGC+TGG 0.420426 4_1:+13220072 Msa0536300:three_prime_UTR
GATTTCGTCGTCGGAGGAGG+AGG 0.420497 4_1:+13219267 Msa0536300:CDS
GCTAGCTCTGACCGCCAAAC+GGG 0.425727 4_1:+13219111 Msa0536300:CDS
CTCCGACGACGAAATCATTA+GGG 0.432362 4_1:-13219260 None:intergenic
ACACTATAAAATTCTACATC+TGG 0.437923 4_1:-13219752 None:intergenic
TGTGACTGTGGTGGTGGTGG+TGG 0.440507 4_1:-13218784 None:intergenic
GCAAGACTTGCAGAAGGTAC+TGG 0.454376 4_1:+13218986 Msa0536300:CDS
ATGAATTGGTAAGGGATTTG+AGG 0.455775 4_1:+13219855 Msa0536300:three_prime_UTR
TGCAGCCAACTGGCAGCAAC+AGG 0.457644 4_1:+13218450 Msa0536300:CDS
TCAAAATAGATGAATTGGTA+AGG 0.458418 4_1:+13219846 Msa0536300:three_prime_UTR
GTTTCTTTGTATGAGAAGGT+TGG 0.458599 4_1:+13219985 Msa0536300:three_prime_UTR
CTAAGGAATGTCCCGGTTGG+TGG 0.464766 4_1:+13219024 Msa0536300:CDS
AATGATTTCGTCGTCGGAGG+AGG 0.466998 4_1:+13219264 Msa0536300:CDS
GAGGATCCACCGGCTCAATT+AGG 0.467697 4_1:+13218824 Msa0536300:CDS
GTTCGCCATCCTTGCCCTAT+CGG 0.470894 4_1:-13218860 None:intergenic
TCTTCACTATTATCACCTAA+AGG 0.472393 4_1:+13218368 Msa0536300:five_prime_UTR
TTTGAACATTTCCTTCAAAA+GGG 0.473490 4_1:-13219476 None:intergenic
AACTAGCACTCCCCGTTTGG+CGG 0.478302 4_1:-13219122 None:intergenic
AGGTGTAAGGCCTAATATAT+CGG 0.483491 4_1:-13219187 None:intergenic
GGCTAGCTCTGACCGCCAAA+CGG 0.486093 4_1:+13219110 Msa0536300:CDS
GGAAACAATAACAGTAATCA+AGG 0.492146 4_1:+13219627 Msa0536300:CDS
AAATAAAATATAATATCCCT+AGG 0.492696 4_1:-13219905 None:intergenic
TTAGGTTTCTTTGTATGAGA+AGG 0.493011 4_1:+13219981 Msa0536300:three_prime_UTR
TTTAGTTACATGGGAGGAGT+AGG 0.502079 4_1:+13219312 Msa0536300:CDS
CAAGTCTTGCAGAAGTGTCT+GGG 0.504581 4_1:-13218973 None:intergenic
GACTGTGACTGTGGTGGTGG+TGG 0.506110 4_1:-13218787 None:intergenic
AGGAATGTCCCGGTTGGTGG+AGG 0.511348 4_1:+13219027 Msa0536300:CDS
GGACATTTCAGTGCTGCCTC+CGG 0.520025 4_1:-13218892 None:intergenic
AGAGTGGATATTGTTATTGG+AGG 0.520652 4_1:-13219160 None:intergenic
TTCAGTGCTGCCTCCGGCAT+AGG 0.523439 4_1:-13218886 None:intergenic
TTAGATCAACTGAAAACCCT+AGG 0.532702 4_1:+13219888 Msa0536300:three_prime_UTR
TTACTGAAGTTATGATGTAA+AGG 0.534579 4_1:-13219237 None:intergenic
ATCAAGATAAGCTGCTGGTA+TGG 0.536728 4_1:-13218428 None:intergenic
ATTTACCTGTTGCTGCCAGT+TGG 0.539661 4_1:-13218455 None:intergenic
CAAAATAGATGAATTGGTAA+GGG 0.539878 4_1:+13219847 Msa0536300:three_prime_UTR
GATGGCGAACATGCCTATGC+CGG 0.544192 4_1:+13218873 Msa0536300:CDS
CATCATCAGCAACCAGGAAA+CGG 0.545159 4_1:+13218727 Msa0536300:CDS
CACCTCAAATGTCATCATTG+AGG 0.546296 4_1:+13219205 Msa0536300:CDS
CGATCCTGGCCTAATTGAGC+CGG 0.550851 4_1:-13218833 None:intergenic
TGGAAACTCAACAAAGTCTC+CGG 0.552418 4_1:+13219089 Msa0536300:CDS
TGAGACTGTGACTGTGGTGG+TGG 0.553445 4_1:-13218790 None:intergenic
CAAGTGGTTTGGAGCAATGG+AGG 0.557508 4_1:+13219376 Msa0536300:CDS
AACCCTAATGATTTCGTCGT+CGG 0.557922 4_1:+13219258 Msa0536300:CDS
CCTCATGGAGGAGGATCCAC+CGG 0.558615 4_1:+13218814 Msa0536300:CDS
ATGATGACATTTGAGGTGTA+AGG 0.560208 4_1:-13219200 None:intergenic
CAGTCACAGTCTCAACCTCA+TGG 0.560556 4_1:+13218799 Msa0536300:CDS
GCCAGGATCGATGTCCGATA+GGG 0.563470 4_1:+13218846 Msa0536300:CDS
TCAAGCAAAAGTAGCAACAA+TGG 0.567762 4_1:+13219069 Msa0536300:CDS
TCCTGGCCTAATTGAGCCGG+TGG 0.569726 4_1:-13218830 None:intergenic
ACATTGTGAGTTCAAAGGAA+TGG 0.570549 4_1:+13220028 Msa0536300:three_prime_UTR
CAGAATCATCATCAGCAACC+AGG 0.572861 4_1:+13218721 Msa0536300:CDS
GATGTCCGATAGGGCAAGGA+TGG 0.573727 4_1:+13218855 Msa0536300:CDS
CCTAATGATTTCGTCGTCGG+AGG 0.575198 4_1:+13219261 Msa0536300:CDS
AACCTCAATGATGACATTTG+AGG 0.576269 4_1:-13219207 None:intergenic
TTTGTGTGAAGTGAAGCTTA+TGG 0.576790 4_1:+13219775 Msa0536300:three_prime_UTR
CATGAAATGATAACTAGTGG+TGG 0.580805 4_1:+13219501 Msa0536300:CDS
CTAATATATCGGCGGAAGAG+TGG 0.581651 4_1:-13219176 None:intergenic
TCCGGAAGCCTCCACCAACC+GGG 0.583043 4_1:-13219035 None:intergenic
TCCACCGGCTCAATTAGGCC+AGG 0.583672 4_1:+13218829 Msa0536300:CDS
GATTTGGGAAGTGCTTTAGG+AGG 0.585086 4_1:+13219336 Msa0536300:CDS
CGGCGCTCTAAGGAATGTCC+CGG 0.585823 4_1:+13219017 Msa0536300:CDS
GGCCAGGATCGATGTCCGAT+AGG 0.588624 4_1:+13218845 Msa0536300:CDS
CAGTCTCAACCTCATGGAGG+AGG 0.588847 4_1:+13218805 Msa0536300:CDS
TAGTAACATTGTGAGTTCAA+AGG 0.592653 4_1:+13220023 Msa0536300:three_prime_UTR
CTGAAGCAGTTGTTGAGAGA+CGG 0.593094 4_1:-13218755 None:intergenic
GGCGAACATGCCTATGCCGG+AGG 0.593250 4_1:+13218876 Msa0536300:CDS
GCTGCATCAAGATAAGCTGC+TGG 0.594629 4_1:-13218433 None:intergenic
GCTCTAAGGAATGTCCCGGT+TGG 0.597092 4_1:+13219021 Msa0536300:CDS
AGTGGTTATGAATGTTTGAG+AGG 0.597784 4_1:-13218247 None:intergenic
GTTTGGCGGTCAGAGCTAGC+CGG 0.603255 4_1:-13219108 None:intergenic
TGCAGAAGGTACTGGACAAG+AGG 0.603431 4_1:+13218994 Msa0536300:CDS
AATCATGAAATGATAACTAG+TGG 0.606438 4_1:+13219498 Msa0536300:CDS
TGAGGTTGAGACTGTGACTG+TGG 0.613393 4_1:-13218796 None:intergenic
AGAAGGTACTGGACAAGAGG+CGG 0.614306 4_1:+13218997 Msa0536300:CDS
GATCGATGTCCGATAGGGCA+AGG 0.614474 4_1:+13218851 Msa0536300:CDS
GCAAGAAAGAAATTAACAAG+TGG 0.623945 4_1:-13218265 None:intergenic
AAATTCAAAGAGAGAAAACA+TGG 0.627320 4_1:+13218396 Msa0536300:exon
AATAAAATATAATATCCCTA+GGG 0.631283 4_1:-13219904 None:intergenic
CTAGCTCTGACCGCCAAACG+GGG 0.632683 4_1:+13219112 Msa0536300:CDS
TAGATCAACTGAAAACCCTA+GGG 0.635361 4_1:+13219889 Msa0536300:three_prime_UTR
ATGGAAGATAGTATCAATAG+GGG 0.643018 4_1:+13219585 Msa0536300:CDS
GAGTGTCTATGTGTTTGTGT+TGG 0.643300 4_1:-13218315 None:intergenic
TGTTGATGAGTCATTGACAT+TGG 0.657135 4_1:-13219402 None:intergenic
CATCAGCAACCAGGAAACGG+CGG 0.659295 4_1:+13218730 Msa0536300:CDS
ACTTCTGCAAGACTTGCAGA+AGG 0.679196 4_1:+13218980 Msa0536300:CDS
GGTTGAGACTGTGACTGTGG+TGG 0.680166 4_1:-13218793 None:intergenic
CCGGTGGATCCTCCTCCATG+AGG 0.687789 4_1:-13218814 None:intergenic
TGAAGAGAATCACATCAACA+AGG 0.700150 4_1:-13218351 None:intergenic
TGTAAGGCCTAATATATCGG+CGG 0.708601 4_1:-13219184 None:intergenic
TAACTAGTGGTGGATATGTG+AGG 0.730675 4_1:+13219511 Msa0536300:CDS
GTGTTGGTTGATTCACAACG+TGG 0.731087 4_1:-13218913 None:intergenic
TCACAGTCTCAACCTCATGG+AGG 0.766876 4_1:+13218802 Msa0536300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTCAAAAGATAAAA+AGG + chr4_1:13218538-13218557 Msa0536300:intron 10.0%
!!! TAATATGTTACTTTTAATAT+AGG + chr4_1:13219957-13219976 Msa0536300:three_prime_UTR 10.0%
!! AAATAATTCAAAAGATAAAA+AGG + chr4_1:13218538-13218557 Msa0536300:intron 10.0%
!!! TAATATGTTACTTTTAATAT+AGG + chr4_1:13219957-13219976 Msa0536300:three_prime_UTR 10.0%
!! TAAGAAAGAAATCAAATATT+TGG - chr4_1:13218616-13218635 None:intergenic 15.0%
!! AATAAAATATAATATCCCTA+GGG - chr4_1:13219907-13219926 None:intergenic 15.0%
!! AAATAAAATATAATATCCCT+AGG - chr4_1:13219908-13219927 None:intergenic 15.0%
!!! AATGGATATTATCAATATTT+TGG + chr4_1:13220046-13220065 Msa0536300:three_prime_UTR 15.0%
!!! ATGGATATTATCAATATTTT+GGG + chr4_1:13220047-13220066 Msa0536300:three_prime_UTR 15.0%
!! TAAGAAAGAAATCAAATATT+TGG - chr4_1:13218616-13218635 None:intergenic 15.0%
!! AATAAAATATAATATCCCTA+GGG - chr4_1:13219907-13219926 None:intergenic 15.0%
!! AAATAAAATATAATATCCCT+AGG - chr4_1:13219908-13219927 None:intergenic 15.0%
!!! AATGGATATTATCAATATTT+TGG + chr4_1:13220046-13220065 Msa0536300:three_prime_UTR 15.0%
!!! ATGGATATTATCAATATTTT+GGG + chr4_1:13220047-13220066 Msa0536300:three_prime_UTR 15.0%
!!! CTTTGAATTTTTTTTCCTTT+AGG - chr4_1:13218386-13218405 None:intergenic 20.0%
!!! TTTTGAATTATTTTGCCTTT+TGG - chr4_1:13218531-13218550 None:intergenic 20.0%
!! AGTATATGAATTGAGAATAA+GGG - chr4_1:13218650-13218669 None:intergenic 20.0%
!! AACAACATAAATAGACAAAA+AGG - chr4_1:13218691-13218710 None:intergenic 20.0%
!!! AATTCAATTTTATCTTCAAG+TGG + chr4_1:13219360-13219379 Msa0536300:CDS 20.0%
!!! GTTACTTTTAATATAGGTTT+AGG + chr4_1:13219963-13219982 Msa0536300:three_prime_UTR 20.0%
!!! CTTTGAATTTTTTTTCCTTT+AGG - chr4_1:13218386-13218405 None:intergenic 20.0%
!!! TTTTGAATTATTTTGCCTTT+TGG - chr4_1:13218531-13218550 None:intergenic 20.0%
!! AGTATATGAATTGAGAATAA+GGG - chr4_1:13218650-13218669 None:intergenic 20.0%
!! AACAACATAAATAGACAAAA+AGG - chr4_1:13218691-13218710 None:intergenic 20.0%
!!! AATTCAATTTTATCTTCAAG+TGG + chr4_1:13219360-13219379 Msa0536300:CDS 20.0%
!!! GTTACTTTTAATATAGGTTT+AGG + chr4_1:13219963-13219982 Msa0536300:three_prime_UTR 20.0%
! AAATTCAAAGAGAGAAAACA+TGG + chr4_1:13218396-13218415 Msa0536300:exon 25.0%
! ACAGGTAAATATAATTAGCA+AGG + chr4_1:13218468-13218487 Msa0536300:intron 25.0%
! AAAGCAAGAACCAAATTAAA+TGG - chr4_1:13218497-13218516 None:intergenic 25.0%
! TATTTGGTATATTCAAGAAG+AGG - chr4_1:13218600-13218619 None:intergenic 25.0%
! GAGTATATGAATTGAGAATA+AGG - chr4_1:13218651-13218670 None:intergenic 25.0%
!! GAAGTAACAAAATTTTGTGT+TGG - chr4_1:13218932-13218951 None:intergenic 25.0%
! TTACTGAAGTTATGATGTAA+AGG - chr4_1:13219240-13219259 None:intergenic 25.0%
!!! AAACTATGGTTTTAGTTACA+TGG + chr4_1:13219302-13219321 Msa0536300:CDS 25.0%
!!! AACTATGGTTTTAGTTACAT+GGG + chr4_1:13219303-13219322 Msa0536300:CDS 25.0%
!! AATTTTATCTTCAAGTGGTT+TGG + chr4_1:13219365-13219384 Msa0536300:CDS 25.0%
!!! ATTTCCTTTTTTGGCTAATT+TGG + chr4_1:13219431-13219450 Msa0536300:CDS 25.0%
! TTTGAACATTTCCTTCAAAA+GGG - chr4_1:13219479-13219498 None:intergenic 25.0%
!! TTTTGAACATTTCCTTCAAA+AGG - chr4_1:13219480-13219499 None:intergenic 25.0%
! AATCATGAAATGATAACTAG+TGG + chr4_1:13219498-13219517 Msa0536300:CDS 25.0%
! AAATGGAAGATAGTATCAAT+AGG + chr4_1:13219583-13219602 Msa0536300:CDS 25.0%
! AATGGAAGATAGTATCAATA+GGG + chr4_1:13219584-13219603 Msa0536300:CDS 25.0%
! ACACTATAAAATTCTACATC+TGG - chr4_1:13219755-13219774 None:intergenic 25.0%
! TCCATTCAAAATAGATGAAT+TGG + chr4_1:13219841-13219860 Msa0536300:three_prime_UTR 25.0%
!!! ACCAATTCATCTATTTTGAA+TGG - chr4_1:13219845-13219864 None:intergenic 25.0%
! TCAAAATAGATGAATTGGTA+AGG + chr4_1:13219846-13219865 Msa0536300:three_prime_UTR 25.0%
! CAAAATAGATGAATTGGTAA+GGG + chr4_1:13219847-13219866 Msa0536300:three_prime_UTR 25.0%
! AAATTCAAAGAGAGAAAACA+TGG + chr4_1:13218396-13218415 Msa0536300:exon 25.0%
! ACAGGTAAATATAATTAGCA+AGG + chr4_1:13218468-13218487 Msa0536300:intron 25.0%
! AAAGCAAGAACCAAATTAAA+TGG - chr4_1:13218497-13218516 None:intergenic 25.0%
! TATTTGGTATATTCAAGAAG+AGG - chr4_1:13218600-13218619 None:intergenic 25.0%
! GAGTATATGAATTGAGAATA+AGG - chr4_1:13218651-13218670 None:intergenic 25.0%
!! GAAGTAACAAAATTTTGTGT+TGG - chr4_1:13218932-13218951 None:intergenic 25.0%
! TTACTGAAGTTATGATGTAA+AGG - chr4_1:13219240-13219259 None:intergenic 25.0%
!!! AAACTATGGTTTTAGTTACA+TGG + chr4_1:13219302-13219321 Msa0536300:CDS 25.0%
!!! AACTATGGTTTTAGTTACAT+GGG + chr4_1:13219303-13219322 Msa0536300:CDS 25.0%
!! AATTTTATCTTCAAGTGGTT+TGG + chr4_1:13219365-13219384 Msa0536300:CDS 25.0%
!!! ATTTCCTTTTTTGGCTAATT+TGG + chr4_1:13219431-13219450 Msa0536300:CDS 25.0%
! TTTGAACATTTCCTTCAAAA+GGG - chr4_1:13219479-13219498 None:intergenic 25.0%
!! TTTTGAACATTTCCTTCAAA+AGG - chr4_1:13219480-13219499 None:intergenic 25.0%
! AATCATGAAATGATAACTAG+TGG + chr4_1:13219498-13219517 Msa0536300:CDS 25.0%
! AAATGGAAGATAGTATCAAT+AGG + chr4_1:13219583-13219602 Msa0536300:CDS 25.0%
! AATGGAAGATAGTATCAATA+GGG + chr4_1:13219584-13219603 Msa0536300:CDS 25.0%
! ACACTATAAAATTCTACATC+TGG - chr4_1:13219755-13219774 None:intergenic 25.0%
! TCCATTCAAAATAGATGAAT+TGG + chr4_1:13219841-13219860 Msa0536300:three_prime_UTR 25.0%
!!! ACCAATTCATCTATTTTGAA+TGG - chr4_1:13219845-13219864 None:intergenic 25.0%
! TCAAAATAGATGAATTGGTA+AGG + chr4_1:13219846-13219865 Msa0536300:three_prime_UTR 25.0%
! CAAAATAGATGAATTGGTAA+GGG + chr4_1:13219847-13219866 Msa0536300:three_prime_UTR 25.0%
GCAAGAAAGAAATTAACAAG+TGG - chr4_1:13218268-13218287 None:intergenic 30.0%
TCTTCACTATTATCACCTAA+AGG + chr4_1:13218368-13218387 Msa0536300:five_prime_UTR 30.0%
AGCAAGGTTTCCATTTAATT+TGG + chr4_1:13218484-13218503 Msa0536300:intron 30.0%
!! CTTTTGTTTCTTTGTCCAAA+AGG + chr4_1:13218513-13218532 Msa0536300:intron 30.0%
ATTGAGAATAAGGGAAGAAA+GGG - chr4_1:13218641-13218660 None:intergenic 30.0%
AATTGAGAATAAGGGAAGAA+AGG - chr4_1:13218642-13218661 None:intergenic 30.0%
!!! ACAGCATCAATTTCCTTTTT+TGG + chr4_1:13219422-13219441 Msa0536300:CDS 30.0%
!! AGTAATTTGTACCCTTTTGA+AGG + chr4_1:13219465-13219484 Msa0536300:CDS 30.0%
ATGGAAGATAGTATCAATAG+GGG + chr4_1:13219585-13219604 Msa0536300:CDS 30.0%
GGAAACAATAACAGTAATCA+AGG + chr4_1:13219627-13219646 Msa0536300:CDS 30.0%
! ATCAAGGAAGTGAACAATTT+TGG + chr4_1:13219643-13219662 Msa0536300:CDS 30.0%
TTAGGTTTCTTTGTATGAGA+AGG + chr4_1:13219981-13220000 Msa0536300:three_prime_UTR 30.0%
TAGTAACATTGTGAGTTCAA+AGG + chr4_1:13220023-13220042 Msa0536300:three_prime_UTR 30.0%
GCAAGAAAGAAATTAACAAG+TGG - chr4_1:13218268-13218287 None:intergenic 30.0%
TCTTCACTATTATCACCTAA+AGG + chr4_1:13218368-13218387 Msa0536300:five_prime_UTR 30.0%
AGCAAGGTTTCCATTTAATT+TGG + chr4_1:13218484-13218503 Msa0536300:intron 30.0%
!! CTTTTGTTTCTTTGTCCAAA+AGG + chr4_1:13218513-13218532 Msa0536300:intron 30.0%
ATTGAGAATAAGGGAAGAAA+GGG - chr4_1:13218641-13218660 None:intergenic 30.0%
AATTGAGAATAAGGGAAGAA+AGG - chr4_1:13218642-13218661 None:intergenic 30.0%
!!! ACAGCATCAATTTCCTTTTT+TGG + chr4_1:13219422-13219441 Msa0536300:CDS 30.0%
!! AGTAATTTGTACCCTTTTGA+AGG + chr4_1:13219465-13219484 Msa0536300:CDS 30.0%
ATGGAAGATAGTATCAATAG+GGG + chr4_1:13219585-13219604 Msa0536300:CDS 30.0%
GGAAACAATAACAGTAATCA+AGG + chr4_1:13219627-13219646 Msa0536300:CDS 30.0%
! ATCAAGGAAGTGAACAATTT+TGG + chr4_1:13219643-13219662 Msa0536300:CDS 30.0%
TTAGGTTTCTTTGTATGAGA+AGG + chr4_1:13219981-13220000 Msa0536300:three_prime_UTR 30.0%
TAGTAACATTGTGAGTTCAA+AGG + chr4_1:13220023-13220042 Msa0536300:three_prime_UTR 30.0%
AGTGGTTATGAATGTTTGAG+AGG - chr4_1:13218250-13218269 None:intergenic 35.0%
TGAAGAGAATCACATCAACA+AGG - chr4_1:13218354-13218373 None:intergenic 35.0%
TCAAGCAAAAGTAGCAACAA+TGG + chr4_1:13219069-13219088 Msa0536300:CDS 35.0%
! AGAGTGGATATTGTTATTGG+AGG - chr4_1:13219163-13219182 None:intergenic 35.0%
GGAAGAGTGGATATTGTTAT+TGG - chr4_1:13219166-13219185 None:intergenic 35.0%
AGGTGTAAGGCCTAATATAT+CGG - chr4_1:13219190-13219209 None:intergenic 35.0%
! ATGATGACATTTGAGGTGTA+AGG - chr4_1:13219203-13219222 None:intergenic 35.0%
AACCTCAATGATGACATTTG+AGG - chr4_1:13219210-13219229 None:intergenic 35.0%
! GGAGATTTAGGGTTAAACTA+TGG + chr4_1:13219288-13219307 Msa0536300:CDS 35.0%
!!! TATGGTTTTAGTTACATGGG+AGG + chr4_1:13219306-13219325 Msa0536300:CDS 35.0%
! TGTTGATGAGTCATTGACAT+TGG - chr4_1:13219405-13219424 None:intergenic 35.0%
!!! TCCTTTTTTGGCTAATTTGG+AGG + chr4_1:13219434-13219453 Msa0536300:CDS 35.0%
!!! CCTTTTTTGGCTAATTTGGA+GGG + chr4_1:13219435-13219454 Msa0536300:CDS 35.0%
CATGAAATGATAACTAGTGG+TGG + chr4_1:13219501-13219520 Msa0536300:CDS 35.0%
! CCAGAAGTTGAAATCACTTT+TGG - chr4_1:13219537-13219556 None:intergenic 35.0%
CCAAAAGTGATTTCAACTTC+TGG + chr4_1:13219534-13219553 Msa0536300:CDS 35.0%
! TCAACTTGCTTCTGTGAAAA+TGG + chr4_1:13219566-13219585 Msa0536300:CDS 35.0%
! TAGTATCAATAGGGGCTTTT+TGG + chr4_1:13219593-13219612 Msa0536300:CDS 35.0%
! AGTATCAATAGGGGCTTTTT+GGG + chr4_1:13219594-13219613 Msa0536300:CDS 35.0%
AATTGGACTGATCATGTTTC+TGG + chr4_1:13219699-13219718 Msa0536300:CDS 35.0%
TTTGTGTGAAGTGAAGCTTA+TGG + chr4_1:13219775-13219794 Msa0536300:three_prime_UTR 35.0%
! TGAAGTGAAGCTTATGGTTT+TGG + chr4_1:13219781-13219800 Msa0536300:three_prime_UTR 35.0%
!!! AAGCTTATGGTTTTGGTTAG+TGG + chr4_1:13219788-13219807 Msa0536300:three_prime_UTR 35.0%
ATGAATTGGTAAGGGATTTG+AGG + chr4_1:13219855-13219874 Msa0536300:three_prime_UTR 35.0%
TTAGATCAACTGAAAACCCT+AGG + chr4_1:13219888-13219907 Msa0536300:three_prime_UTR 35.0%
TAGATCAACTGAAAACCCTA+GGG + chr4_1:13219889-13219908 Msa0536300:three_prime_UTR 35.0%
GTTTCTTTGTATGAGAAGGT+TGG + chr4_1:13219985-13220004 Msa0536300:three_prime_UTR 35.0%
ACATTGTGAGTTCAAAGGAA+TGG + chr4_1:13220028-13220047 Msa0536300:three_prime_UTR 35.0%
AGTGGTTATGAATGTTTGAG+AGG - chr4_1:13218250-13218269 None:intergenic 35.0%
TGAAGAGAATCACATCAACA+AGG - chr4_1:13218354-13218373 None:intergenic 35.0%
TCAAGCAAAAGTAGCAACAA+TGG + chr4_1:13219069-13219088 Msa0536300:CDS 35.0%
! AGAGTGGATATTGTTATTGG+AGG - chr4_1:13219163-13219182 None:intergenic 35.0%
GGAAGAGTGGATATTGTTAT+TGG - chr4_1:13219166-13219185 None:intergenic 35.0%
AGGTGTAAGGCCTAATATAT+CGG - chr4_1:13219190-13219209 None:intergenic 35.0%
! ATGATGACATTTGAGGTGTA+AGG - chr4_1:13219203-13219222 None:intergenic 35.0%
AACCTCAATGATGACATTTG+AGG - chr4_1:13219210-13219229 None:intergenic 35.0%
! GGAGATTTAGGGTTAAACTA+TGG + chr4_1:13219288-13219307 Msa0536300:CDS 35.0%
!!! TATGGTTTTAGTTACATGGG+AGG + chr4_1:13219306-13219325 Msa0536300:CDS 35.0%
! TGTTGATGAGTCATTGACAT+TGG - chr4_1:13219405-13219424 None:intergenic 35.0%
!!! TCCTTTTTTGGCTAATTTGG+AGG + chr4_1:13219434-13219453 Msa0536300:CDS 35.0%
!!! CCTTTTTTGGCTAATTTGGA+GGG + chr4_1:13219435-13219454 Msa0536300:CDS 35.0%
CATGAAATGATAACTAGTGG+TGG + chr4_1:13219501-13219520 Msa0536300:CDS 35.0%
! CCAGAAGTTGAAATCACTTT+TGG - chr4_1:13219537-13219556 None:intergenic 35.0%
CCAAAAGTGATTTCAACTTC+TGG + chr4_1:13219534-13219553 Msa0536300:CDS 35.0%
! TCAACTTGCTTCTGTGAAAA+TGG + chr4_1:13219566-13219585 Msa0536300:CDS 35.0%
! TAGTATCAATAGGGGCTTTT+TGG + chr4_1:13219593-13219612 Msa0536300:CDS 35.0%
! AGTATCAATAGGGGCTTTTT+GGG + chr4_1:13219594-13219613 Msa0536300:CDS 35.0%
AATTGGACTGATCATGTTTC+TGG + chr4_1:13219699-13219718 Msa0536300:CDS 35.0%
TTTGTGTGAAGTGAAGCTTA+TGG + chr4_1:13219775-13219794 Msa0536300:three_prime_UTR 35.0%
! TGAAGTGAAGCTTATGGTTT+TGG + chr4_1:13219781-13219800 Msa0536300:three_prime_UTR 35.0%
!!! AAGCTTATGGTTTTGGTTAG+TGG + chr4_1:13219788-13219807 Msa0536300:three_prime_UTR 35.0%
ATGAATTGGTAAGGGATTTG+AGG + chr4_1:13219855-13219874 Msa0536300:three_prime_UTR 35.0%
TTAGATCAACTGAAAACCCT+AGG + chr4_1:13219888-13219907 Msa0536300:three_prime_UTR 35.0%
TAGATCAACTGAAAACCCTA+GGG + chr4_1:13219889-13219908 Msa0536300:three_prime_UTR 35.0%
GTTTCTTTGTATGAGAAGGT+TGG + chr4_1:13219985-13220004 Msa0536300:three_prime_UTR 35.0%
ACATTGTGAGTTCAAAGGAA+TGG + chr4_1:13220028-13220047 Msa0536300:three_prime_UTR 35.0%
GAGTGTCTATGTGTTTGTGT+TGG - chr4_1:13218318-13218337 None:intergenic 40.0%
ATCAAGATAAGCTGCTGGTA+TGG - chr4_1:13218431-13218450 None:intergenic 40.0%
! TGCTTGATCTCTTGTTTCTC+CGG - chr4_1:13219056-13219075 None:intergenic 40.0%
TGGAAACTCAACAAAGTCTC+CGG + chr4_1:13219089-13219108 Msa0536300:CDS 40.0%
TGTAAGGCCTAATATATCGG+CGG - chr4_1:13219187-13219206 None:intergenic 40.0%
CACCTCAAATGTCATCATTG+AGG + chr4_1:13219205-13219224 Msa0536300:CDS 40.0%
AACCCTAATGATTTCGTCGT+CGG + chr4_1:13219258-13219277 Msa0536300:CDS 40.0%
TTTAGTTACATGGGAGGAGT+AGG + chr4_1:13219312-13219331 Msa0536300:CDS 40.0%
CCCTCCAAATTAGCCAAAAA+AGG - chr4_1:13219438-13219457 None:intergenic 40.0%
!! TAACTAGTGGTGGATATGTG+AGG + chr4_1:13219511-13219530 Msa0536300:CDS 40.0%
! TGGAATAGTGCTGTTGTTAC+TGG + chr4_1:13219663-13219682 Msa0536300:CDS 40.0%
CTGGTAATTCTGCAGCTAAT+TGG + chr4_1:13219682-13219701 Msa0536300:CDS 40.0%
GAGTGTCTATGTGTTTGTGT+TGG - chr4_1:13218318-13218337 None:intergenic 40.0%
ATCAAGATAAGCTGCTGGTA+TGG - chr4_1:13218431-13218450 None:intergenic 40.0%
! TGCTTGATCTCTTGTTTCTC+CGG - chr4_1:13219056-13219075 None:intergenic 40.0%
TGGAAACTCAACAAAGTCTC+CGG + chr4_1:13219089-13219108 Msa0536300:CDS 40.0%
TGTAAGGCCTAATATATCGG+CGG - chr4_1:13219187-13219206 None:intergenic 40.0%
CACCTCAAATGTCATCATTG+AGG + chr4_1:13219205-13219224 Msa0536300:CDS 40.0%
AACCCTAATGATTTCGTCGT+CGG + chr4_1:13219258-13219277 Msa0536300:CDS 40.0%
TTTAGTTACATGGGAGGAGT+AGG + chr4_1:13219312-13219331 Msa0536300:CDS 40.0%
CCCTCCAAATTAGCCAAAAA+AGG - chr4_1:13219438-13219457 None:intergenic 40.0%
!! TAACTAGTGGTGGATATGTG+AGG + chr4_1:13219511-13219530 Msa0536300:CDS 40.0%
! TGGAATAGTGCTGTTGTTAC+TGG + chr4_1:13219663-13219682 Msa0536300:CDS 40.0%
CTGGTAATTCTGCAGCTAAT+TGG + chr4_1:13219682-13219701 Msa0536300:CDS 40.0%
CTTATCTTGATGCAGCCAAC+TGG + chr4_1:13218440-13218459 Msa0536300:CDS 45.0%
ATTTACCTGTTGCTGCCAGT+TGG - chr4_1:13218458-13218477 None:intergenic 45.0%
CAGAATCATCATCAGCAACC+AGG + chr4_1:13218721-13218740 Msa0536300:CDS 45.0%
CATCATCAGCAACCAGGAAA+CGG + chr4_1:13218727-13218746 Msa0536300:CDS 45.0%
CTGAAGCAGTTGTTGAGAGA+CGG - chr4_1:13218758-13218777 None:intergenic 45.0%
!! GTGTTGGTTGATTCACAACG+TGG - chr4_1:13218916-13218935 None:intergenic 45.0%
!! CAAGTCTTGCAGAAGTGTCT+GGG - chr4_1:13218976-13218995 None:intergenic 45.0%
ACTTCTGCAAGACTTGCAGA+AGG + chr4_1:13218980-13218999 Msa0536300:CDS 45.0%
CTAATATATCGGCGGAAGAG+TGG - chr4_1:13219179-13219198 None:intergenic 45.0%
CACTCTTCCGCCGATATATT+AGG + chr4_1:13219177-13219196 Msa0536300:CDS 45.0%
CTCCGACGACGAAATCATTA+GGG - chr4_1:13219263-13219282 None:intergenic 45.0%
ATGGGAGGAGTAGGTGATTT+GGG + chr4_1:13219321-13219340 Msa0536300:CDS 45.0%
!! GGTGATTTGGGAAGTGCTTT+AGG + chr4_1:13219333-13219352 Msa0536300:CDS 45.0%
!! GATTTGGGAAGTGCTTTAGG+AGG + chr4_1:13219336-13219355 Msa0536300:CDS 45.0%
! CTTCAAGTGGTTTGGAGCAA+TGG + chr4_1:13219373-13219392 Msa0536300:CDS 45.0%
!! GGCTTTTTGGGAATTAGCAC+AGG + chr4_1:13219606-13219625 Msa0536300:CDS 45.0%
CTTATCTTGATGCAGCCAAC+TGG + chr4_1:13218440-13218459 Msa0536300:CDS 45.0%
ATTTACCTGTTGCTGCCAGT+TGG - chr4_1:13218458-13218477 None:intergenic 45.0%
CAGAATCATCATCAGCAACC+AGG + chr4_1:13218721-13218740 Msa0536300:CDS 45.0%
CATCATCAGCAACCAGGAAA+CGG + chr4_1:13218727-13218746 Msa0536300:CDS 45.0%
CTGAAGCAGTTGTTGAGAGA+CGG - chr4_1:13218758-13218777 None:intergenic 45.0%
!! GTGTTGGTTGATTCACAACG+TGG - chr4_1:13218916-13218935 None:intergenic 45.0%
!! CAAGTCTTGCAGAAGTGTCT+GGG - chr4_1:13218976-13218995 None:intergenic 45.0%
ACTTCTGCAAGACTTGCAGA+AGG + chr4_1:13218980-13218999 Msa0536300:CDS 45.0%
CTAATATATCGGCGGAAGAG+TGG - chr4_1:13219179-13219198 None:intergenic 45.0%
CACTCTTCCGCCGATATATT+AGG + chr4_1:13219177-13219196 Msa0536300:CDS 45.0%
CTCCGACGACGAAATCATTA+GGG - chr4_1:13219263-13219282 None:intergenic 45.0%
ATGGGAGGAGTAGGTGATTT+GGG + chr4_1:13219321-13219340 Msa0536300:CDS 45.0%
!! GGTGATTTGGGAAGTGCTTT+AGG + chr4_1:13219333-13219352 Msa0536300:CDS 45.0%
!! GATTTGGGAAGTGCTTTAGG+AGG + chr4_1:13219336-13219355 Msa0536300:CDS 45.0%
! CTTCAAGTGGTTTGGAGCAA+TGG + chr4_1:13219373-13219392 Msa0536300:CDS 45.0%
!! GGCTTTTTGGGAATTAGCAC+AGG + chr4_1:13219606-13219625 Msa0536300:CDS 45.0%
GCTGCATCAAGATAAGCTGC+TGG - chr4_1:13218436-13218455 None:intergenic 50.0%
TGAGGTTGAGACTGTGACTG+TGG - chr4_1:13218799-13218818 None:intergenic 50.0%
CAGTCACAGTCTCAACCTCA+TGG + chr4_1:13218799-13218818 Msa0536300:CDS 50.0%
TCACAGTCTCAACCTCATGG+AGG + chr4_1:13218802-13218821 Msa0536300:CDS 50.0%
!! GCAAGTCTTGCAGAAGTGTC+TGG - chr4_1:13218977-13218996 None:intergenic 50.0%
! GCAAGACTTGCAGAAGGTAC+TGG + chr4_1:13218986-13219005 Msa0536300:CDS 50.0%
!! TGCAGAAGGTACTGGACAAG+AGG + chr4_1:13218994-13219013 Msa0536300:CDS 50.0%
!! AGAAGGTACTGGACAAGAGG+CGG + chr4_1:13218997-13219016 Msa0536300:CDS 50.0%
TTGAACTAGCACTCCCCGTT+TGG - chr4_1:13219128-13219147 None:intergenic 50.0%
CCTCCGACGACGAAATCATT+AGG - chr4_1:13219264-13219283 None:intergenic 50.0%
CCTAATGATTTCGTCGTCGG+AGG + chr4_1:13219261-13219280 Msa0536300:CDS 50.0%
AATGATTTCGTCGTCGGAGG+AGG + chr4_1:13219264-13219283 Msa0536300:CDS 50.0%
TCGGAGGAGGAGGAGATTTA+GGG + chr4_1:13219277-13219296 Msa0536300:CDS 50.0%
CATGGGAGGAGTAGGTGATT+TGG + chr4_1:13219320-13219339 Msa0536300:CDS 50.0%
! CAAGTGGTTTGGAGCAATGG+AGG + chr4_1:13219376-13219395 Msa0536300:CDS 50.0%
GCTGCATCAAGATAAGCTGC+TGG - chr4_1:13218436-13218455 None:intergenic 50.0%
TGAGGTTGAGACTGTGACTG+TGG - chr4_1:13218799-13218818 None:intergenic 50.0%
CAGTCACAGTCTCAACCTCA+TGG + chr4_1:13218799-13218818 Msa0536300:CDS 50.0%
TCACAGTCTCAACCTCATGG+AGG + chr4_1:13218802-13218821 Msa0536300:CDS 50.0%
!! GCAAGTCTTGCAGAAGTGTC+TGG - chr4_1:13218977-13218996 None:intergenic 50.0%
! GCAAGACTTGCAGAAGGTAC+TGG + chr4_1:13218986-13219005 Msa0536300:CDS 50.0%
!! TGCAGAAGGTACTGGACAAG+AGG + chr4_1:13218994-13219013 Msa0536300:CDS 50.0%
!! AGAAGGTACTGGACAAGAGG+CGG + chr4_1:13218997-13219016 Msa0536300:CDS 50.0%
TTGAACTAGCACTCCCCGTT+TGG - chr4_1:13219128-13219147 None:intergenic 50.0%
CCTCCGACGACGAAATCATT+AGG - chr4_1:13219264-13219283 None:intergenic 50.0%
CCTAATGATTTCGTCGTCGG+AGG + chr4_1:13219261-13219280 Msa0536300:CDS 50.0%
AATGATTTCGTCGTCGGAGG+AGG + chr4_1:13219264-13219283 Msa0536300:CDS 50.0%
TCGGAGGAGGAGGAGATTTA+GGG + chr4_1:13219277-13219296 Msa0536300:CDS 50.0%
CATGGGAGGAGTAGGTGATT+TGG + chr4_1:13219320-13219339 Msa0536300:CDS 50.0%
! CAAGTGGTTTGGAGCAATGG+AGG + chr4_1:13219376-13219395 Msa0536300:CDS 50.0%
CATCAGCAACCAGGAAACGG+CGG + chr4_1:13218730-13218749 Msa0536300:CDS 55.0%
TGAGACTGTGACTGTGGTGG+TGG - chr4_1:13218793-13218812 None:intergenic 55.0%
GGTTGAGACTGTGACTGTGG+TGG - chr4_1:13218796-13218815 None:intergenic 55.0%
CAGTCTCAACCTCATGGAGG+AGG + chr4_1:13218805-13218824 Msa0536300:CDS 55.0%
!! GAGGATCCACCGGCTCAATT+AGG + chr4_1:13218824-13218843 Msa0536300:CDS 55.0%
CGATCCTGGCCTAATTGAGC+CGG - chr4_1:13218836-13218855 None:intergenic 55.0%
GCCAGGATCGATGTCCGATA+GGG + chr4_1:13218846-13218865 Msa0536300:CDS 55.0%
GATCGATGTCCGATAGGGCA+AGG + chr4_1:13218851-13218870 Msa0536300:CDS 55.0%
GATGTCCGATAGGGCAAGGA+TGG + chr4_1:13218855-13218874 Msa0536300:CDS 55.0%
GTTCGCCATCCTTGCCCTAT+CGG - chr4_1:13218863-13218882 None:intergenic 55.0%
GATGGCGAACATGCCTATGC+CGG + chr4_1:13218873-13218892 Msa0536300:CDS 55.0%
GGACATTTCAGTGCTGCCTC+CGG - chr4_1:13218895-13218914 None:intergenic 55.0%
!! GCTCTAAGGAATGTCCCGGT+TGG + chr4_1:13219021-13219040 Msa0536300:CDS 55.0%
CTAAGGAATGTCCCGGTTGG+TGG + chr4_1:13219024-13219043 Msa0536300:CDS 55.0%
AACTAGCACTCCCCGTTTGG+CGG - chr4_1:13219125-13219144 None:intergenic 55.0%
GTCGGAGGAGGAGGAGATTT+AGG + chr4_1:13219276-13219295 Msa0536300:CDS 55.0%
CATCAGCAACCAGGAAACGG+CGG + chr4_1:13218730-13218749 Msa0536300:CDS 55.0%
TGAGACTGTGACTGTGGTGG+TGG - chr4_1:13218793-13218812 None:intergenic 55.0%
GGTTGAGACTGTGACTGTGG+TGG - chr4_1:13218796-13218815 None:intergenic 55.0%
CAGTCTCAACCTCATGGAGG+AGG + chr4_1:13218805-13218824 Msa0536300:CDS 55.0%
!! GAGGATCCACCGGCTCAATT+AGG + chr4_1:13218824-13218843 Msa0536300:CDS 55.0%
CGATCCTGGCCTAATTGAGC+CGG - chr4_1:13218836-13218855 None:intergenic 55.0%
GCCAGGATCGATGTCCGATA+GGG + chr4_1:13218846-13218865 Msa0536300:CDS 55.0%
GATCGATGTCCGATAGGGCA+AGG + chr4_1:13218851-13218870 Msa0536300:CDS 55.0%
GATGTCCGATAGGGCAAGGA+TGG + chr4_1:13218855-13218874 Msa0536300:CDS 55.0%
GTTCGCCATCCTTGCCCTAT+CGG - chr4_1:13218863-13218882 None:intergenic 55.0%
GATGGCGAACATGCCTATGC+CGG + chr4_1:13218873-13218892 Msa0536300:CDS 55.0%
GGACATTTCAGTGCTGCCTC+CGG - chr4_1:13218895-13218914 None:intergenic 55.0%
!! GCTCTAAGGAATGTCCCGGT+TGG + chr4_1:13219021-13219040 Msa0536300:CDS 55.0%
CTAAGGAATGTCCCGGTTGG+TGG + chr4_1:13219024-13219043 Msa0536300:CDS 55.0%
AACTAGCACTCCCCGTTTGG+CGG - chr4_1:13219125-13219144 None:intergenic 55.0%
GTCGGAGGAGGAGGAGATTT+AGG + chr4_1:13219276-13219295 Msa0536300:CDS 55.0%
TGCAGCCAACTGGCAGCAAC+AGG + chr4_1:13218450-13218469 Msa0536300:CDS 60.0%
!! TGTGACTGTGGTGGTGGTGG+TGG - chr4_1:13218787-13218806 None:intergenic 60.0%
!! GACTGTGACTGTGGTGGTGG+TGG - chr4_1:13218790-13218809 None:intergenic 60.0%
CCTCATGGAGGAGGATCCAC+CGG + chr4_1:13218814-13218833 Msa0536300:CDS 60.0%
!! TCCACCGGCTCAATTAGGCC+AGG + chr4_1:13218829-13218848 Msa0536300:CDS 60.0%
TCCTGGCCTAATTGAGCCGG+TGG - chr4_1:13218833-13218852 None:intergenic 60.0%
GGCCAGGATCGATGTCCGAT+AGG + chr4_1:13218845-13218864 Msa0536300:CDS 60.0%
GCCCTATCGGACATCGATCC+TGG - chr4_1:13218850-13218869 None:intergenic 60.0%
TTCAGTGCTGCCTCCGGCAT+AGG - chr4_1:13218889-13218908 None:intergenic 60.0%
!! CGGCGCTCTAAGGAATGTCC+CGG + chr4_1:13219017-13219036 Msa0536300:CDS 60.0%
!! AGGAATGTCCCGGTTGGTGG+AGG + chr4_1:13219027-13219046 Msa0536300:CDS 60.0%
GTTTGGCGGTCAGAGCTAGC+CGG - chr4_1:13219111-13219130 None:intergenic 60.0%
!! GGCTAGCTCTGACCGCCAAA+CGG + chr4_1:13219110-13219129 Msa0536300:CDS 60.0%
!! GCTAGCTCTGACCGCCAAAC+GGG + chr4_1:13219111-13219130 Msa0536300:CDS 60.0%
!! CTAGCTCTGACCGCCAAACG+GGG + chr4_1:13219112-13219131 Msa0536300:CDS 60.0%
GATTTCGTCGTCGGAGGAGG+AGG + chr4_1:13219267-13219286 Msa0536300:CDS 60.0%
TGCAGCCAACTGGCAGCAAC+AGG + chr4_1:13218450-13218469 Msa0536300:CDS 60.0%
!! TGTGACTGTGGTGGTGGTGG+TGG - chr4_1:13218787-13218806 None:intergenic 60.0%
!! GACTGTGACTGTGGTGGTGG+TGG - chr4_1:13218790-13218809 None:intergenic 60.0%
CCTCATGGAGGAGGATCCAC+CGG + chr4_1:13218814-13218833 Msa0536300:CDS 60.0%
!! TCCACCGGCTCAATTAGGCC+AGG + chr4_1:13218829-13218848 Msa0536300:CDS 60.0%
TCCTGGCCTAATTGAGCCGG+TGG - chr4_1:13218833-13218852 None:intergenic 60.0%
GGCCAGGATCGATGTCCGAT+AGG + chr4_1:13218845-13218864 Msa0536300:CDS 60.0%
GCCCTATCGGACATCGATCC+TGG - chr4_1:13218850-13218869 None:intergenic 60.0%
TTCAGTGCTGCCTCCGGCAT+AGG - chr4_1:13218889-13218908 None:intergenic 60.0%
!! CGGCGCTCTAAGGAATGTCC+CGG + chr4_1:13219017-13219036 Msa0536300:CDS 60.0%
!! AGGAATGTCCCGGTTGGTGG+AGG + chr4_1:13219027-13219046 Msa0536300:CDS 60.0%
GTTTGGCGGTCAGAGCTAGC+CGG - chr4_1:13219111-13219130 None:intergenic 60.0%
!! GGCTAGCTCTGACCGCCAAA+CGG + chr4_1:13219110-13219129 Msa0536300:CDS 60.0%
!! GCTAGCTCTGACCGCCAAAC+GGG + chr4_1:13219111-13219130 Msa0536300:CDS 60.0%
!! CTAGCTCTGACCGCCAAACG+GGG + chr4_1:13219112-13219131 Msa0536300:CDS 60.0%
GATTTCGTCGTCGGAGGAGG+AGG + chr4_1:13219267-13219286 Msa0536300:CDS 60.0%
!! GACTGTGGTGGTGGTGGTGG+TGG - chr4_1:13218784-13218803 None:intergenic 65.0%
CCGGTGGATCCTCCTCCATG+AGG - chr4_1:13218817-13218836 None:intergenic 65.0%
GGCGAACATGCCTATGCCGG+AGG + chr4_1:13218876-13218895 Msa0536300:CDS 65.0%
GGACAAGAGGCGGCGCTCTA+AGG + chr4_1:13219007-13219026 Msa0536300:CDS 65.0%
!! TCCCGGTTGGTGGAGGCTTC+CGG + chr4_1:13219034-13219053 Msa0536300:CDS 65.0%
TCCGGAAGCCTCCACCAACC+GGG - chr4_1:13219038-13219057 None:intergenic 65.0%
CTCCGGAAGCCTCCACCAAC+CGG - chr4_1:13219039-13219058 None:intergenic 65.0%
!! GACTGTGGTGGTGGTGGTGG+TGG - chr4_1:13218784-13218803 None:intergenic 65.0%
CCGGTGGATCCTCCTCCATG+AGG - chr4_1:13218817-13218836 None:intergenic 65.0%
GGCGAACATGCCTATGCCGG+AGG + chr4_1:13218876-13218895 Msa0536300:CDS 65.0%
GGACAAGAGGCGGCGCTCTA+AGG + chr4_1:13219007-13219026 Msa0536300:CDS 65.0%
!! TCCCGGTTGGTGGAGGCTTC+CGG + chr4_1:13219034-13219053 Msa0536300:CDS 65.0%
TCCGGAAGCCTCCACCAACC+GGG - chr4_1:13219038-13219057 None:intergenic 65.0%
CTCCGGAAGCCTCCACCAAC+CGG - chr4_1:13219039-13219058 None:intergenic 65.0%
GAGACGGAGCCGCCGTTTCC+TGG - chr4_1:13218742-13218761 None:intergenic 70.0%
GAGACGGAGCCGCCGTTTCC+TGG - chr4_1:13218742-13218761 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 13218231 13220093 13218231 ID=Msa0536300;Name=Msa0536300
chr4_1 mRNA 13218231 13220093 13218231 ID=Msa0536300-mRNA-1;Parent=Msa0536300;Name=Msa0536300-mRNA-1;_AED=0.00;_eAED=0.00;_QI=184|1|1|1|1|1|2|332|366
chr4_1 exon 13218231 13218471 13218231 ID=Msa0536300-mRNA-1:exon:4171;Parent=Msa0536300-mRNA-1
chr4_1 exon 13218718 13220093 13218718 ID=Msa0536300-mRNA-1:exon:4172;Parent=Msa0536300-mRNA-1
chr4_1 five_prime_UTR 13218231 13218414 13218231 ID=Msa0536300-mRNA-1:five_prime_utr;Parent=Msa0536300-mRNA-1
chr4_1 CDS 13218415 13218471 13218415 ID=Msa0536300-mRNA-1:cds;Parent=Msa0536300-mRNA-1
chr4_1 CDS 13218718 13219761 13218718 ID=Msa0536300-mRNA-1:cds;Parent=Msa0536300-mRNA-1
chr4_1 three_prime_UTR 13219762 13220093 13219762 ID=Msa0536300-mRNA-1:three_prime_utr;Parent=Msa0536300-mRNA-1
Gene Sequence

>Msa0536300

ATGGTTTTTACTTCCATACCAGCAGCTTATCTTGATGCAGCCAACTGGCAGCAACAGCAACAGAATCATCATCAGCAACCAGGAAACGGCGGCTCCGTCTCTCAACAACTGCTTCAGACACCACCACCACCACCACCACAGTCACAGTCTCAACCTCATGGAGGAGGATCCACCGGCTCAATTAGGCCAGGATCGATGTCCGATAGGGCAAGGATGGCGAACATGCCTATGCCGGAGGCAGCACTGAAATGTCCACGTTGTGAATCAACCAACACAAAATTTTGTTACTTCAACAACTACAGTCTCTCTCAGCCCAGACACTTCTGCAAGACTTGCAGAAGGTACTGGACAAGAGGCGGCGCTCTAAGGAATGTCCCGGTTGGTGGAGGCTTCCGGAGAAACAAGAGATCAAGCAAAAGTAGCAACAATGGAAACTCAACAAAGTCTCCGGCTAGCTCTGACCGCCAAACGGGGAGTGCTAGTTCAACAAACTCAATCACCTCCAATAACAATATCCACTCTTCCGCCGATATATTAGGCCTTACACCTCAAATGTCATCATTGAGGTTCATGACACCTTTACATCATAACTTCAGTAACCCTAATGATTTCGTCGTCGGAGGAGGAGGAGATTTAGGGTTAAACTATGGTTTTAGTTACATGGGAGGAGTAGGTGATTTGGGAAGTGCTTTAGGAGGTAATTCAATTTTATCTTCAAGTGGTTTGGAGCAATGGAGGATGCCAATGTCAATGACTCATCAACAGCATCAATTTCCTTTTTTGGCTAATTTGGAGGGTTCAAATAGTAATTTGTACCCTTTTGAAGGAAATGTTCAAAATCATGAAATGATAACTAGTGGTGGATATGTGAGGCCAAAAGTGATTTCAACTTCTGGAATTATGACTCAACTTGCTTCTGTGAAAATGGAAGATAGTATCAATAGGGGCTTTTTGGGAATTAGCACAGGAAACAATAACAGTAATCAAGGAAGTGAACAATTTTGGAATAGTGCTGTTGTTACTGGTAATTCTGCAGCTAATTGGACTGATCATGTTTCTGGTTTTAGCTCTTCTTCTAATACTACTAGTAACCAGATGTAG
Protein sequence

>Msa0536300

MVFTSIPAAYLDAANWQQQQQNHHQQPGNGGSVSQQLLQTPPPPPPQSQSQPHGGGSTGSIRPGSMSDRARMANMPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSSKSSNNGNSTKSPASSDRQTGSASSTNSITSNNNIHSSADILGLTPQMSSLRFMTPLHHNFSNPNDFVVGGGGDLGLNYGFSYMGGVGDLGSALGGNSILSSSGLEQWRMPMSMTHQQHQFPFLANLEGSNSNLYPFEGNVQNHEMITSGGYVRPKVISTSGIMTQLASVKMEDSINRGFLGISTGNNNSNQGSEQFWNSAVVTGNSAANWTDHVSGFSSSSNTTSNQM*