Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537690 | XP_013455140.1 | 85.259 | 251 | 17 | 1 | 1 | 251 | 1 | 231 | 7.32e-153 | 435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537690 | A0A072UJ99 | 85.259 | 251 | 17 | 1 | 1 | 251 | 1 | 231 | 3.49e-153 | 435 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0073390 | Msa0537690 | 0.803047 | 4.200450e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537690 | MtrunA17_Chr4g0012671 | 85.259 | 251 | 17 | 1 | 1 | 251 | 1 | 231 | 6.73e-157 | 435 |
| Msa0537690 | MtrunA17_Chr2g0312491 | 85.124 | 242 | 15 | 2 | 1 | 242 | 1 | 221 | 1.30e-148 | 414 |
| Msa0537690 | MtrunA17_Chr2g0312501 | 93.976 | 83 | 5 | 0 | 1 | 83 | 1 | 83 | 7.25e-52 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537690 | AT1G12244.1 | 61.576 | 203 | 57 | 2 | 45 | 246 | 61 | 243 | 4.51e-74 | 226 |
Find 83 sgRNAs with CRISPR-Local
Find 341 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTAATCAACACAATAATT+TGG | 0.205887 | 4_1:-16393212 | Msa0537690:three_prime_UTR |
| CATTACAAAACTTCAAATTA+AGG | 0.212601 | 4_1:-16393175 | Msa0537690:three_prime_UTR |
| TCCTTGTAGTTCAAGATTCT+TGG | 0.213325 | 4_1:+16393386 | None:intergenic |
| GAAGCTGATGAGTTTATAAT+TGG | 0.233134 | 4_1:-16395610 | Msa0537690:CDS |
| TTCTTCCTCCGAAGCGCGTT+TGG | 0.249873 | 4_1:+16398149 | None:intergenic |
| TTGAAAATGAAAATAGCTTA+TGG | 0.256089 | 4_1:+16398342 | None:intergenic |
| TGAGAAATAATCATCATCTT+TGG | 0.274796 | 4_1:+16393344 | None:intergenic |
| AGGCATCTTGTTTCTTCTGC+TGG | 0.280011 | 4_1:+16393795 | None:intergenic |
| ACACAATAATTTGGTGTGTT+TGG | 0.285723 | 4_1:-16393203 | Msa0537690:three_prime_UTR |
| GTATATCTACACGATGAATA+TGG | 0.323530 | 4_1:-16394446 | Msa0537690:CDS |
| GGTTAAATGCCGAAATTGTT+AGG | 0.333058 | 4_1:-16393057 | Msa0537690:intron |
| TGTCAACAAAAGATCCTTGC+AGG | 0.341856 | 4_1:+16392815 | None:intergenic |
| ATTTGGAAGTTGCGAGAAAA+TGG | 0.345174 | 4_1:-16393250 | Msa0537690:three_prime_UTR |
| CCGCCTAGTGGTATTGGTTT+GGG | 0.347710 | 4_1:-16397916 | Msa0537690:CDS |
| TTGTGTGTGTAAGTTTATAA+TGG | 0.348984 | 4_1:-16392979 | Msa0537690:three_prime_UTR |
| CCTTGTAGTTCAAGATTCTT+GGG | 0.350745 | 4_1:+16393387 | None:intergenic |
| TCTAATTTCAAGTATGCATT+TGG | 0.351545 | 4_1:-16393267 | Msa0537690:three_prime_UTR |
| TACTATTACATCAAAATAAA+CGG | 0.354934 | 4_1:+16393117 | None:intergenic |
| CCCGCCTAGTGGTATTGGTT+TGG | 0.368082 | 4_1:-16397917 | Msa0537690:CDS |
| AATAACCCGCCTAGTGGTAT+TGG | 0.386938 | 4_1:-16397922 | Msa0537690:CDS |
| GGCATCTTGTTTCTTCTGCT+GGG | 0.389860 | 4_1:+16393796 | None:intergenic |
| TTCTCTCTTGGTGTGGACTT+AGG | 0.392088 | 4_1:-16398104 | Msa0537690:CDS |
| GAGAAATAATCATCATCTTT+GGG | 0.395248 | 4_1:+16393345 | None:intergenic |
| CTTCTGCGATGTTCATTATC+CGG | 0.402017 | 4_1:+16395735 | None:intergenic |
| AACTTCCTCCAAACGCGCTT+CGG | 0.404160 | 4_1:-16398157 | Msa0537690:CDS |
| TGGAGAGGTGGGTTCTCTCT+TGG | 0.405747 | 4_1:-16398116 | Msa0537690:CDS |
| CATGTCGACCATTCGATCTA+TGG | 0.407762 | 4_1:+16394409 | None:intergenic |
| GAAGATTAATCACTTAATAA+AGG | 0.409357 | 4_1:-16393318 | Msa0537690:exon |
| TGAGAGTGTGCTCCTTGTTA+AGG | 0.414129 | 4_1:-16397890 | Msa0537690:intron |
| GAGAGATATTTCTCCACATC+AGG | 0.432417 | 4_1:-16393432 | Msa0537690:CDS |
| CAAGTGGAGGTACCGGGGTC+CGG | 0.448894 | 4_1:+16392999 | None:intergenic |
| GGGGTCCGGCCTAACAATTT+CGG | 0.459732 | 4_1:+16393048 | None:intergenic |
| AAATTAGAAAACACGAATGA+TGG | 0.464328 | 4_1:+16393282 | None:intergenic |
| TCCTTTCCATCACAAGACTT+TGG | 0.469405 | 4_1:+16395583 | None:intergenic |
| AAAGATGCAGATTGGAGAGG+TGG | 0.477112 | 4_1:-16398128 | Msa0537690:CDS |
| AAGAGTTTCAAGGGTGGCAC+TGG | 0.486520 | 4_1:+16398272 | None:intergenic |
| TCTAGAAGTCCTAGCTCAAC+TGG | 0.487412 | 4_1:-16393078 | Msa0537690:three_prime_UTR |
| GACTTAGGAATGGCTCGTAC+TGG | 0.490640 | 4_1:-16398089 | Msa0537690:CDS |
| AAATGAGTGCAAGAGTTTCA+AGG | 0.491961 | 4_1:+16398262 | None:intergenic |
| ACACACACAAGTGGAGGTAC+CGG | 0.495820 | 4_1:+16392992 | None:intergenic |
| TATATCTACACGATGAATAT+GGG | 0.495994 | 4_1:-16394445 | Msa0537690:CDS |
| TTCCTCCGAAGCGCGTTTGG+AGG | 0.506216 | 4_1:+16398152 | None:intergenic |
| CACACACAAGTGGAGGTACC+GGG | 0.510025 | 4_1:+16392993 | None:intergenic |
| TCTTGGTGTGGACTTAGGAA+TGG | 0.521326 | 4_1:-16398099 | Msa0537690:CDS |
| GGAGGAAGAAAGATGCAGAT+TGG | 0.522484 | 4_1:-16398136 | Msa0537690:CDS |
| TCCAAAGTCTTGTGATGGAA+AGG | 0.526441 | 4_1:-16395584 | Msa0537690:CDS |
| AACTTCAAATTAAGGATGTG+TGG | 0.527731 | 4_1:-16393167 | Msa0537690:three_prime_UTR |
| TTAACAAGGAGCACACTCTC+AGG | 0.529413 | 4_1:+16397892 | None:intergenic |
| GGCATTTAACCAGTTGAGCT+AGG | 0.535749 | 4_1:+16393069 | None:intergenic |
| GGACTTCCAAAGTCTTGTGA+TGG | 0.537166 | 4_1:-16395589 | Msa0537690:CDS |
| AGGTGGGTTCTCTCTTGGTG+TGG | 0.539897 | 4_1:-16398111 | Msa0537690:CDS |
| CCCAAGAATCTTGAACTACA+AGG | 0.541911 | 4_1:-16393387 | Msa0537690:CDS |
| ACTTCAAATTAAGGATGTGT+GGG | 0.550996 | 4_1:-16393166 | Msa0537690:three_prime_UTR |
| TACACTTACCATGGCAGCAT+AGG | 0.559395 | 4_1:+16393775 | None:intergenic |
| CAATTTCTCTCTCTCTAATG+TGG | 0.560553 | 4_1:-16398316 | Msa0537690:exon |
| AATGAGTGCAAGAGTTTCAA+GGG | 0.561769 | 4_1:+16398263 | None:intergenic |
| TTCCTCCAAACGCGCTTCGG+AGG | 0.565039 | 4_1:-16398154 | Msa0537690:CDS |
| GAGGACAGAAGCTTGAGGTC+CGG | 0.572920 | 4_1:-16395754 | Msa0537690:CDS |
| ACTGGCATTGCTCTCAGCAA+AGG | 0.577358 | 4_1:-16398071 | Msa0537690:CDS |
| ATCAGCCGCCATAGATCGAA+TGG | 0.579290 | 4_1:-16394417 | Msa0537690:CDS |
| ACAAGATGCCTATGCTGCCA+TGG | 0.581302 | 4_1:-16393783 | Msa0537690:intron |
| ATTCTTTCAGGGGCTTGAGT+AGG | 0.582922 | 4_1:-16393820 | Msa0537690:intron |
| CCAAACCAATACCACTAGGC+GGG | 0.586055 | 4_1:+16397917 | None:intergenic |
| AATGAACATCGCAGAAGAAG+AGG | 0.590370 | 4_1:-16395729 | Msa0537690:intron |
| AAGAAAGATGCAGATTGGAG+AGG | 0.601510 | 4_1:-16398131 | Msa0537690:CDS |
| AGGATTGTGTTCATTGACAC+TGG | 0.604127 | 4_1:+16392835 | None:intergenic |
| AAGATGCAGATTGGAGAGGT+GGG | 0.604518 | 4_1:-16398127 | Msa0537690:CDS |
| TATAAACTTACACACACAAG+TGG | 0.609594 | 4_1:+16392983 | None:intergenic |
| CTACAAGGAAAACTTAGAAG+TGG | 0.611235 | 4_1:-16393372 | Msa0537690:CDS |
| TGTATTGTTAGGCCGGACCC+CGG | 0.624486 | 4_1:-16393011 | Msa0537690:intron |
| CAAGCCTTCCAGTAAAAGAA+CGG | 0.630801 | 4_1:+16395539 | None:intergenic |
| AAACTTACACACACAAGTGG+AGG | 0.645210 | 4_1:+16392986 | None:intergenic |
| GGTCCCAAACCAATACCACT+AGG | 0.662272 | 4_1:+16397913 | None:intergenic |
| TCAATGAACACAATCCTGCA+AGG | 0.662441 | 4_1:-16392829 | Msa0537690:three_prime_UTR |
| TTGCTAATCGAGCTGCTGAG+AGG | 0.671815 | 4_1:-16395519 | Msa0537690:intron |
| AAATAATCATCATCTTTGGG+AGG | 0.679374 | 4_1:+16393348 | None:intergenic |
| ACTGCGAGGACAGAAGCTTG+AGG | 0.687429 | 4_1:-16395759 | Msa0537690:CDS |
| CCCAAACCAATACCACTAGG+CGG | 0.691337 | 4_1:+16397916 | None:intergenic |
| GTCGACCATTCGATCTATGG+CGG | 0.692504 | 4_1:+16394412 | None:intergenic |
| TCGAACCTAACACCTTAACA+AGG | 0.698138 | 4_1:+16397878 | None:intergenic |
| ACACACAAGTGGAGGTACCG+GGG | 0.699262 | 4_1:+16392994 | None:intergenic |
| TCTCTCAATAACCCGCCTAG+TGG | 0.703592 | 4_1:-16397928 | Msa0537690:CDS |
| GAGTGCAAGAGTTTCAAGGG+TGG | 0.721147 | 4_1:+16398266 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTCATAATTATTTATTA+TGG | + | chr4_1:16397084-16397103 | None:intergenic | 10.0% |
| !!! | ATTTGAAATATCATATTTTT+AGG | - | chr4_1:16397451-16397470 | Msa0537690:intron | 10.0% |
| !!! | TTTGAAATATCATATTTTTA+GGG | - | chr4_1:16397452-16397471 | Msa0537690:intron | 10.0% |
| !!! | TTAATAAAAAAGAATGTTTT+TGG | - | chr4_1:16397648-16397667 | Msa0537690:intron | 10.0% |
| !!! | TAATAAAAAAGAATGTTTTT+GGG | - | chr4_1:16397649-16397668 | Msa0537690:intron | 10.0% |
| !!! | TTGAAAATTTTAATCAGTTA+GGG | - | chr4_1:16393646-16393665 | Msa0537690:intron | 15.0% |
| !!! | GTTTTACAAATTGATAATAA+AGG | + | chr4_1:16395039-16395058 | None:intergenic | 15.0% |
| !! | AAAGTAAATACACAATTATA+AGG | + | chr4_1:16395415-16395434 | None:intergenic | 15.0% |
| !! | TATAATTGTGTATTTACTTT+AGG | - | chr4_1:16395415-16395434 | Msa0537690:intron | 15.0% |
| !!! | TTCTATTCATTTTCTTATTT+TGG | + | chr4_1:16395768-16395787 | None:intergenic | 15.0% |
| !! | AATAAGAAAATGAATAGAAA+AGG | - | chr4_1:16395769-16395788 | Msa0537690:CDS | 15.0% |
| !! | ATAAGAAAATGAATAGAAAA+GGG | - | chr4_1:16395770-16395789 | Msa0537690:CDS | 15.0% |
| !! | CATTATTCTTAATTCTTATA+AGG | - | chr4_1:16396192-16396211 | Msa0537690:intron | 15.0% |
| !!! | TATCAATAGATCATTATTTT+AGG | + | chr4_1:16396434-16396453 | None:intergenic | 15.0% |
| !!! | TAACATTTTTGAAAAAAATG+AGG | - | chr4_1:16397479-16397498 | Msa0537690:intron | 15.0% |
| !! | TACTATTACATCAAAATAAA+CGG | + | chr4_1:16398090-16398109 | None:intergenic | 15.0% |
| !!! | TTTTGATGTAATAGTAAAAA+TGG | - | chr4_1:16398094-16398113 | Msa0537690:CDS | 15.0% |
| !! | TTGAAAATGAAAATAGCTTA+TGG | + | chr4_1:16392865-16392884 | None:intergenic | 20.0% |
| !!! | GTTGAAAATTTTAATCAGTT+AGG | - | chr4_1:16393645-16393664 | Msa0537690:intron | 20.0% |
| !!! | ACACATAAATTTTATCCAAT+AGG | + | chr4_1:16393870-16393889 | None:intergenic | 20.0% |
| !! | AAATGATGTTACAAAGTAAA+CGG | + | chr4_1:16394312-16394331 | None:intergenic | 20.0% |
| !!! | TTTCAATTTTTACATGTAGA+TGG | - | chr4_1:16394330-16394349 | Msa0537690:intron | 20.0% |
| !! | TGATAAAATAACATTAGTGA+AGG | + | chr4_1:16394529-16394548 | None:intergenic | 20.0% |
| !!! | CACTAATGTTATTTTATCAA+TGG | - | chr4_1:16394530-16394549 | Msa0537690:intron | 20.0% |
| !! | TTATCAATGGTAATAAAAAC+AGG | - | chr4_1:16394543-16394562 | Msa0537690:intron | 20.0% |
| !! | ATTTAGACATATGTTTGAAT+TGG | + | chr4_1:16394648-16394667 | None:intergenic | 20.0% |
| !!! | GTCAAAAGAGTATATAAAAA+AGG | - | chr4_1:16394702-16394721 | Msa0537690:intron | 20.0% |
| !!! | TTTTTATGTTTGCGAATTAT+TGG | + | chr4_1:16395928-16395947 | None:intergenic | 20.0% |
| !! | ACGAACAAAAGATAAAATAA+AGG | - | chr4_1:16396020-16396039 | Msa0537690:intron | 20.0% |
| !! | AAGAATTAAGAATAATGACT+TGG | + | chr4_1:16396189-16396208 | None:intergenic | 20.0% |
| !! | CTATTATCTTTATACTCTAA+TGG | - | chr4_1:16396362-16396381 | Msa0537690:intron | 20.0% |
| !!! | AAAACTGGTTCTTATTTATA+AGG | - | chr4_1:16396530-16396549 | Msa0537690:intron | 20.0% |
| !! | AAAGATAAATTAGAATTCTG+CGG | + | chr4_1:16396988-16397007 | None:intergenic | 20.0% |
| !!! | TATATAGTTTAAAACCAGTT+TGG | - | chr4_1:16397168-16397187 | Msa0537690:intron | 20.0% |
| !! | TATAAAATTGTTTGCCTAAA+AGG | - | chr4_1:16397192-16397211 | Msa0537690:intron | 20.0% |
| !!! | ATTTTTGAAAAAAATGAGGA+AGG | - | chr4_1:16397483-16397502 | Msa0537690:intron | 20.0% |
| !!! | TTTTTGAAAAAAATGAGGAA+GGG | - | chr4_1:16397484-16397503 | Msa0537690:intron | 20.0% |
| !! | GAAGATTAATCACTTAATAA+AGG | - | chr4_1:16397886-16397905 | Msa0537690:intron | 20.0% |
| !! | TGTTAATCAACACAATAATT+TGG | - | chr4_1:16397992-16398011 | Msa0537690:intron | 20.0% |
| !!! | CTTAATTTGAAGTTTTGTAA+TGG | + | chr4_1:16398031-16398050 | None:intergenic | 20.0% |
| !! | CATTACAAAACTTCAAATTA+AGG | - | chr4_1:16398029-16398048 | Msa0537690:intron | 20.0% |
| !!! | CATTTTTTTTTCTTTTTGGT+TGG | + | chr4_1:16398268-16398287 | None:intergenic | 20.0% |
| !! | CAACCAAAAAGAAAAAAAAA+TGG | - | chr4_1:16398266-16398285 | Msa0537690:CDS | 20.0% |
| !!! | CTACCATTTTTTTTTCTTTT+TGG | + | chr4_1:16398272-16398291 | None:intergenic | 20.0% |
| !! | CAAAAAGAAAAAAAAATGGT+AGG | - | chr4_1:16398270-16398289 | Msa0537690:CDS | 20.0% |
| !! | TGAATTTTTGCATGATTTGA+AGG | + | chr4_1:16392971-16392990 | None:intergenic | 25.0% |
| !!! | TAATGCTGTTTTTAGATTGT+GGG | + | chr4_1:16393017-16393036 | None:intergenic | 25.0% |
| !!! | TTAATGCTGTTTTTAGATTG+TGG | + | chr4_1:16393018-16393037 | None:intergenic | 25.0% |
| ! | TCTAAAAACAGCATTAACTT+TGG | - | chr4_1:16393021-16393040 | Msa0537690:intron | 25.0% |
| !!! | AAAAGTGTTTTACCGTTAAA+GGG | + | chr4_1:16393171-16393190 | None:intergenic | 25.0% |
| !!! | AAAAAGTGTTTTACCGTTAA+AGG | + | chr4_1:16393172-16393191 | None:intergenic | 25.0% |
| !!! | GTTTGTTTTGTTGTTGTTTT+TGG | - | chr4_1:16393193-16393212 | Msa0537690:three_prime_UTR | 25.0% |
| !! | TTTTTGGATATTCGTCATTT+TGG | - | chr4_1:16393209-16393228 | Msa0537690:three_prime_UTR | 25.0% |
| ! | ACAATAACTAAGTATGTGTA+AGG | - | chr4_1:16393432-16393451 | Msa0537690:CDS | 25.0% |
| ! | ACTGAAACTAAAAAACAACA+GGG | + | chr4_1:16393627-16393646 | None:intergenic | 25.0% |
| ! | AACTGAAACTAAAAAACAAC+AGG | + | chr4_1:16393628-16393647 | None:intergenic | 25.0% |
| ! | TTACAACTGTGTTTACAAAA+TGG | + | chr4_1:16393705-16393724 | None:intergenic | 25.0% |
| ! | TAAACACAGTTGTAAAATGT+TGG | - | chr4_1:16393710-16393729 | Msa0537690:intron | 25.0% |
| ! | AAACACAGTTGTAAAATGTT+GGG | - | chr4_1:16393711-16393730 | Msa0537690:intron | 25.0% |
| ! | TTATTAGGTAAAATCTACGT+AGG | + | chr4_1:16393934-16393953 | None:intergenic | 25.0% |
| ! | AGCATTTCACTTTATCAAAT+TGG | - | chr4_1:16393981-16394000 | Msa0537690:intron | 25.0% |
| ! | TGTATGTTCCTTAGTTAAAA+TGG | + | chr4_1:16394111-16394130 | None:intergenic | 25.0% |
| ! | ATAAGATGAATAGAGTAGAA+TGG | - | chr4_1:16394264-16394283 | Msa0537690:intron | 25.0% |
| ! | AATGATGTTACAAAGTAAAC+GGG | + | chr4_1:16394311-16394330 | None:intergenic | 25.0% |
| !! | AATTTTTACATGTAGATGGT+TGG | - | chr4_1:16394334-16394353 | Msa0537690:intron | 25.0% |
| ! | ACTGCAAAATGTTAAAACAT+TGG | + | chr4_1:16394450-16394469 | None:intergenic | 25.0% |
| !! | TAACATTTTGCAGTATTTTC+AGG | - | chr4_1:16394456-16394475 | Msa0537690:CDS | 25.0% |
| !!! | ACACCTGTTTTTGAAAATTT+AGG | + | chr4_1:16394590-16394609 | None:intergenic | 25.0% |
| ! | ACATATGTTTGAATTGGTAA+TGG | + | chr4_1:16394642-16394661 | None:intergenic | 25.0% |
| ! | ACATATGTCTAAATGTGATT+TGG | - | chr4_1:16394654-16394673 | Msa0537690:intron | 25.0% |
| !! | TGTATTGCAATTTTACCTTT+TGG | + | chr4_1:16394766-16394785 | None:intergenic | 25.0% |
| !! | ATCAAATTGTAACAGTTTTC+TGG | + | chr4_1:16394809-16394828 | None:intergenic | 25.0% |
| !! | AATCTGAAGTAAATTGGATT+CGG | + | chr4_1:16395075-16395094 | None:intergenic | 25.0% |
| ! | TACACAATTATAAGGATCAA+TGG | + | chr4_1:16395407-16395426 | None:intergenic | 25.0% |
| ! | CCTATAATTCAAAATCATCT+TGG | + | chr4_1:16395575-16395594 | None:intergenic | 25.0% |
| !! | CCAAGATGATTTTGAATTAT+AGG | - | chr4_1:16395572-16395591 | Msa0537690:CDS | 25.0% |
| ! | ATAGATATTGAAGAATAGCA+AGG | + | chr4_1:16396246-16396265 | None:intergenic | 25.0% |
| !! | AGTCCTTTAAGAATTCAAAA+TGG | - | chr4_1:16396388-16396407 | Msa0537690:intron | 25.0% |
| !! | GAACCATTTTGAATTCTTAA+AGG | + | chr4_1:16396394-16396413 | None:intergenic | 25.0% |
| !!! | TAGATCATTATTTTAGGATG+TGG | + | chr4_1:16396428-16396447 | None:intergenic | 25.0% |
| !! | ACAAACTTGATTTTTCCTTT+CGG | + | chr4_1:16396595-16396614 | None:intergenic | 25.0% |
| ! | TCTGATGCTTATTTAGTATT+TGG | - | chr4_1:16396617-16396636 | Msa0537690:intron | 25.0% |
| ! | TATATCTACACGATGAATAT+GGG | - | chr4_1:16396759-16396778 | Msa0537690:intron | 25.0% |
| !! | AAACAATTTTATAGCCAAAC+TGG | + | chr4_1:16397185-16397204 | None:intergenic | 25.0% |
| !!! | ATTTCAAGTAACATTTTGTG+TGG | - | chr4_1:16397345-16397364 | Msa0537690:intron | 25.0% |
| ! | TATTTCAAATACACTTACCA+TGG | + | chr4_1:16397441-16397460 | None:intergenic | 25.0% |
| !! | GATTTGAATTTTGTTCCTTT+AGG | - | chr4_1:16397564-16397583 | Msa0537690:intron | 25.0% |
| !! | TAATTGTCTTCTCTTTTCAT+TGG | + | chr4_1:16397709-16397728 | None:intergenic | 25.0% |
| ! | ATGAAAAGAGAAGACAATTA+TGG | - | chr4_1:16397709-16397728 | Msa0537690:intron | 25.0% |
| ! | GAGAAATAATCATCATCTTT+GGG | + | chr4_1:16397862-16397881 | None:intergenic | 25.0% |
| ! | TGAGAAATAATCATCATCTT+TGG | + | chr4_1:16397863-16397882 | None:intergenic | 25.0% |
| ! | AAATTAGAAAACACGAATGA+TGG | + | chr4_1:16397925-16397944 | None:intergenic | 25.0% |
| !! | TCTAATTTCAAGTATGCATT+TGG | - | chr4_1:16397937-16397956 | Msa0537690:intron | 25.0% |
| ! | GATGTAATAGTAAAAATGGT+AGG | - | chr4_1:16398098-16398117 | Msa0537690:CDS | 25.0% |
| ! | TTGTGTGTGTAAGTTTATAA+TGG | - | chr4_1:16398225-16398244 | Msa0537690:CDS | 25.0% |
| !! | TCTTTTGTTGACAGAATTAA+TGG | - | chr4_1:16398399-16398418 | Msa0537690:five_prime_UTR | 25.0% |
| !!! | TGTGATTTGGTACTATGTTT+TGG | - | chr4_1:16393670-16393689 | Msa0537690:intron | 30.0% |
| ! | GATTTTACCTAATAAGAGAG+TGG | - | chr4_1:16393939-16393958 | Msa0537690:intron | 30.0% |
| TCTAATTCCACTCTCTTATT+AGG | + | chr4_1:16393949-16393968 | None:intergenic | 30.0% | |
| AACCAGTAATAATCTGATAC+AGG | + | chr4_1:16394173-16394192 | None:intergenic | 30.0% | |
| TAGATGGTTGGAATTACATT+TGG | - | chr4_1:16394346-16394365 | Msa0537690:intron | 30.0% | |
| TAATTGTGATAGAGAGAAGA+TGG | - | chr4_1:16394386-16394405 | Msa0537690:intron | 30.0% | |
| AGAAGATGGAAGCTAATTAA+AGG | - | chr4_1:16394400-16394419 | Msa0537690:intron | 30.0% | |
| ! | TAACATTAGTGAAGGCATAA+CGG | + | chr4_1:16394521-16394540 | None:intergenic | 30.0% |
| CAGGAAACACTAAAAGTAAA+CGG | - | chr4_1:16394562-16394581 | Msa0537690:intron | 30.0% | |
| AGGAAACACTAAAAGTAAAC+GGG | - | chr4_1:16394563-16394582 | Msa0537690:intron | 30.0% | |
| ! | GGTCCTAAATTTTCAAAAAC+AGG | - | chr4_1:16394584-16394603 | Msa0537690:intron | 30.0% |
| ! | TGCAATTTTACCTTTTGGAT+TGG | + | chr4_1:16394761-16394780 | None:intergenic | 30.0% |
| TTGACTAAGCAACATATTCT+TGG | - | chr4_1:16394940-16394959 | Msa0537690:intron | 30.0% | |
| GAATTGGAAATCAGTGAATT+GGG | + | chr4_1:16394982-16395001 | None:intergenic | 30.0% | |
| TGAATTGGAAATCAGTGAAT+TGG | + | chr4_1:16394983-16395002 | None:intergenic | 30.0% | |
| !! | AATGTGTTCAAGCTTTGAAT+TGG | + | chr4_1:16394998-16395017 | None:intergenic | 30.0% |
| ACATAGAACCTAATATGCAA+GGG | + | chr4_1:16395205-16395224 | None:intergenic | 30.0% | |
| AACATAGAACCTAATATGCA+AGG | + | chr4_1:16395206-16395225 | None:intergenic | 30.0% | |
| TGGTATGTAAGTTTAGTCAA+TGG | - | chr4_1:16395304-16395323 | Msa0537690:intron | 30.0% | |
| ! | GTAAGTTTAGTCAATGGATT+TGG | - | chr4_1:16395310-16395329 | Msa0537690:intron | 30.0% |
| CATACTAAACAACAAAGACA+CGG | + | chr4_1:16395340-16395359 | None:intergenic | 30.0% | |
| TTTGTGCGATGCTTAAAATT+CGG | - | chr4_1:16395515-16395534 | Msa0537690:intron | 30.0% | |
| GAAGCTGATGAGTTTATAAT+TGG | - | chr4_1:16395594-16395613 | Msa0537690:CDS | 30.0% | |
| TTGTCAACACTACATTAGAA+TGG | + | chr4_1:16395715-16395734 | None:intergenic | 30.0% | |
| ATGAATAGAAAAGGGATGAA+TGG | - | chr4_1:16395778-16395797 | Msa0537690:intron | 30.0% | |
| ! | GAATTATTGGAGGTATATCT+CGG | + | chr4_1:16395915-16395934 | None:intergenic | 30.0% |
| TTATGTTTGCGAATTATTGG+AGG | + | chr4_1:16395925-16395944 | None:intergenic | 30.0% | |
| GCAAACATAAAAAATGCTCT+GGG | - | chr4_1:16395935-16395954 | Msa0537690:intron | 30.0% | |
| TAGAGTTCTTAAAGCAAATG+CGG | + | chr4_1:16396345-16396364 | None:intergenic | 30.0% | |
| !!! | AACCAGTTGTGTTTTTAAGT+CGG | + | chr4_1:16396557-16396576 | None:intergenic | 30.0% |
| ! | TTATTTCTCGCACTTAATAG+AGG | - | chr4_1:16396655-16396674 | Msa0537690:intron | 30.0% |
| GTATATCTACACGATGAATA+TGG | - | chr4_1:16396758-16396777 | Msa0537690:intron | 30.0% | |
| ACAGTTCATATACTACATGA+AGG | - | chr4_1:16396887-16396906 | Msa0537690:intron | 30.0% | |
| CAGTTCATATACTACATGAA+GGG | - | chr4_1:16396888-16396907 | Msa0537690:intron | 30.0% | |
| TTTGAGGAAAAGATCCAATT+AGG | + | chr4_1:16396949-16396968 | None:intergenic | 30.0% | |
| AGTTATAAAACGACACTTTG+AGG | + | chr4_1:16396965-16396984 | None:intergenic | 30.0% | |
| TTATTTATTATGGACCATGC+AGG | + | chr4_1:16397074-16397093 | None:intergenic | 30.0% | |
| !! | TGAAGAAGTATGCATGATTT+TGG | - | chr4_1:16397097-16397116 | Msa0537690:intron | 30.0% |
| !! | GAAGAAGTATGCATGATTTT+GGG | - | chr4_1:16397098-16397117 | Msa0537690:intron | 30.0% |
| ! | TGGTAAAACACTTTCCTTTT+AGG | + | chr4_1:16397209-16397228 | None:intergenic | 30.0% |
| ACACGCTTAAAATTCTTTCA+GGG | - | chr4_1:16397373-16397392 | Msa0537690:intron | 30.0% | |
| ! | CGTTAATGACCATTTTACAA+TGG | - | chr4_1:16397531-16397550 | Msa0537690:intron | 30.0% |
| ! | CATTTTACAATGGTCTCTAA+GGG | - | chr4_1:16397541-16397560 | Msa0537690:intron | 30.0% |
| ! | ATTTTACAATGGTCTCTAAG+GGG | - | chr4_1:16397542-16397561 | Msa0537690:intron | 30.0% |
| AAATAATCATCATCTTTGGG+AGG | + | chr4_1:16397859-16397878 | None:intergenic | 30.0% | |
| !! | ACACAATAATTTGGTGTGTT+TGG | - | chr4_1:16398001-16398020 | Msa0537690:intron | 30.0% |
| AACTTCAAATTAAGGATGTG+TGG | - | chr4_1:16398037-16398056 | Msa0537690:intron | 30.0% | |
| ACTTCAAATTAAGGATGTGT+GGG | - | chr4_1:16398038-16398057 | Msa0537690:intron | 30.0% | |
| TGTGGGAAAAAAATGTCAAA+AGG | - | chr4_1:16398055-16398074 | Msa0537690:CDS | 30.0% | |
| TATAAACTTACACACACAAG+TGG | + | chr4_1:16398224-16398243 | None:intergenic | 30.0% | |
| CAATTTCTCTCTCTCTAATG+TGG | - | chr4_1:16392888-16392907 | Msa0537690:three_prime_UTR | 35.0% | |
| AATGAGTGCAAGAGTTTCAA+GGG | + | chr4_1:16392944-16392963 | None:intergenic | 35.0% | |
| AAATGAGTGCAAGAGTTTCA+AGG | + | chr4_1:16392945-16392964 | None:intergenic | 35.0% | |
| ACTAATGAAGTGCAGAATCA+GGG | + | chr4_1:16393236-16393255 | None:intergenic | 35.0% | |
| TCAGAGACTTCAATACATTG+AGG | - | chr4_1:16393553-16393572 | Msa0537690:intron | 35.0% | |
| CAGAGACTTCAATACATTGA+GGG | - | chr4_1:16393554-16393573 | Msa0537690:intron | 35.0% | |
| AGAGACTTCAATACATTGAG+GGG | - | chr4_1:16393555-16393574 | Msa0537690:intron | 35.0% | |
| ! | CAACAGGGTAATAGTCATTT+TGG | + | chr4_1:16393612-16393631 | None:intergenic | 35.0% |
| AATCAGTTAGGGATGTGATT+TGG | - | chr4_1:16393657-16393676 | Msa0537690:intron | 35.0% | |
| !! | TCTAGCACTTGTTTTCCTAT+TGG | - | chr4_1:16393852-16393871 | Msa0537690:intron | 35.0% |
| CCTTAGTTAAAATGGTCAAC+CGG | + | chr4_1:16394103-16394122 | None:intergenic | 35.0% | |
| CTAAGGAACATACATTGTGA+TGG | - | chr4_1:16394117-16394136 | Msa0537690:intron | 35.0% | |
| AGCCTGTATCAGATTATTAC+TGG | - | chr4_1:16394168-16394187 | Msa0537690:intron | 35.0% | |
| !! | AGAGTAGAATGGACTAGAAT+CGG | - | chr4_1:16394275-16394294 | Msa0537690:intron | 35.0% |
| GGTTGGAATTACATTTGGTT+AGG | - | chr4_1:16394351-16394370 | Msa0537690:intron | 35.0% | |
| !! | GAATTGGTAATGGAATAGAG+TGG | + | chr4_1:16394632-16394651 | None:intergenic | 35.0% |
| !!! | TTACCTTTTGGATTGGTGTT+TGG | + | chr4_1:16394754-16394773 | None:intergenic | 35.0% |
| !!! | GTTTTCTGGCTTGTTTTTCA+TGG | + | chr4_1:16394795-16394814 | None:intergenic | 35.0% |
| ! | GCGCAAAATCTGAAGTAAAT+TGG | + | chr4_1:16395081-16395100 | None:intergenic | 35.0% |
| ! | TCACTCTCTACTCATTTTAG+AGG | + | chr4_1:16395103-16395122 | None:intergenic | 35.0% |
| ! | TCTAAAATGAGTAGAGAGTG+AGG | - | chr4_1:16395102-16395121 | Msa0537690:intron | 35.0% |
| TCATTCAACCCTTGCATATT+AGG | - | chr4_1:16395194-16395213 | Msa0537690:intron | 35.0% | |
| CATATTAGGTTCTATGTTCC+TGG | - | chr4_1:16395208-16395227 | Msa0537690:intron | 35.0% | |
| GTGTGCTTATTAGTGATGTT+AGG | - | chr4_1:16395281-16395300 | Msa0537690:intron | 35.0% | |
| TGCTTATTAGTGATGTTAGG+TGG | - | chr4_1:16395284-16395303 | Msa0537690:intron | 35.0% | |
| AATCATCTTGGTTATCTCTG+AGG | + | chr4_1:16395563-16395582 | None:intergenic | 35.0% | |
| ! | AACATAGTCCGTTCTTTTAC+TGG | - | chr4_1:16395657-16395676 | Msa0537690:intron | 35.0% |
| CGCAAACATAAAAAATGCTC+TGG | - | chr4_1:16395934-16395953 | Msa0537690:intron | 35.0% | |
| !! | AAGTACTTTGAGACTGTTTG+AGG | + | chr4_1:16396138-16396157 | None:intergenic | 35.0% |
| AGATGAGATAAGAACCTCTA+TGG | + | chr4_1:16396304-16396323 | None:intergenic | 35.0% | |
| ! | GGTTCTTATCTCATCTTTTG+TGG | - | chr4_1:16396308-16396327 | Msa0537690:intron | 35.0% |
| ! | TTACTCCTATGATGGAACTT+AGG | - | chr4_1:16396506-16396525 | Msa0537690:intron | 35.0% |
| ! | TACTCCTATGATGGAACTTA+GGG | - | chr4_1:16396507-16396526 | Msa0537690:intron | 35.0% |
| ! | TTTTCCCTAAGTTCCATCAT+AGG | + | chr4_1:16396514-16396533 | None:intergenic | 35.0% |
| TATCTCAACTCTAACTTCAG+AGG | - | chr4_1:16396728-16396747 | Msa0537690:intron | 35.0% | |
| ATTGTATCCTTCAATGCTGT+CGG | - | chr4_1:16396848-16396867 | Msa0537690:intron | 35.0% | |
| ATGTTACCTTACCTCCTAAT+TGG | - | chr4_1:16396932-16396951 | Msa0537690:intron | 35.0% | |
| AAAGATCCAATTAGGAGGTA+AGG | + | chr4_1:16396941-16396960 | None:intergenic | 35.0% | |
| GACACGCTTAAAATTCTTTC+AGG | - | chr4_1:16397372-16397391 | Msa0537690:intron | 35.0% | |
| CACGCTTAAAATTCTTTCAG+GGG | - | chr4_1:16397374-16397393 | Msa0537690:intron | 35.0% | |
| CCTTAGAGACCATTGTAAAA+TGG | + | chr4_1:16397543-16397562 | None:intergenic | 35.0% | |
| ! | CCATTTTACAATGGTCTCTA+AGG | - | chr4_1:16397540-16397559 | Msa0537690:intron | 35.0% |
| ACTTTGATCTCGTAACCTAA+AGG | + | chr4_1:16397582-16397601 | None:intergenic | 35.0% | |
| TTTCATTGGCACTTCAAAAC+AGG | + | chr4_1:16397695-16397714 | None:intergenic | 35.0% | |
| CCTTGTAGTTCAAGATTCTT+GGG | + | chr4_1:16397820-16397839 | None:intergenic | 35.0% | |
| TCCTTGTAGTTCAAGATTCT+TGG | + | chr4_1:16397821-16397840 | None:intergenic | 35.0% | |
| CTACAAGGAAAACTTAGAAG+TGG | - | chr4_1:16397832-16397851 | Msa0537690:intron | 35.0% | |
| ATTTGGAAGTTGCGAGAAAA+TGG | - | chr4_1:16397954-16397973 | Msa0537690:intron | 35.0% | |
| GGTTAAATGCCGAAATTGTT+AGG | - | chr4_1:16398147-16398166 | Msa0537690:CDS | 35.0% | |
| ACCTCCACTTATGTATTGTT+AGG | - | chr4_1:16398182-16398201 | Msa0537690:CDS | 35.0% | |
| ! | AAAAAATGGTAGGTACTGCT+AGG | - | chr4_1:16398280-16398299 | Msa0537690:CDS | 35.0% |
| ! | AAAAATGGTAGGTACTGCTA+GGG | - | chr4_1:16398281-16398300 | Msa0537690:CDS | 35.0% |
| AAGAAAGATGCAGATTGGAG+AGG | - | chr4_1:16393073-16393092 | Msa0537690:three_prime_UTR | 40.0% | |
| !! | CTTCACTTTTCGCCCTTTAA+CGG | - | chr4_1:16393156-16393175 | Msa0537690:three_prime_UTR | 40.0% |
| GACTAATGAAGTGCAGAATC+AGG | + | chr4_1:16393237-16393256 | None:intergenic | 40.0% | |
| TCGAACCTAACACCTTAACA+AGG | + | chr4_1:16393329-16393348 | None:intergenic | 40.0% | |
| CTAAATTAGCCCACCCAAAT+TGG | + | chr4_1:16393362-16393381 | None:intergenic | 40.0% | |
| AATACATTGAGGGGCTATTG+TGG | - | chr4_1:16393564-16393583 | Msa0537690:intron | 40.0% | |
| TGGCTACTCGTTATACATTC+AGG | - | chr4_1:16393584-16393603 | Msa0537690:intron | 40.0% | |
| GGCTACTCGTTATACATTCA+GGG | - | chr4_1:16393585-16393604 | Msa0537690:intron | 40.0% | |
| ! | TGTGTCCCACCATTTTATGT+GGG | - | chr4_1:16393887-16393906 | Msa0537690:intron | 40.0% |
| GAAATGGGTCCCACATAAAA+TGG | + | chr4_1:16393899-16393918 | None:intergenic | 40.0% | |
| TCACGATATTCCGCTAAATC+TGG | - | chr4_1:16394070-16394089 | Msa0537690:intron | 40.0% | |
| CGGCAAAAATCCAGATTTAG+CGG | + | chr4_1:16394083-16394102 | None:intergenic | 40.0% | |
| ! | CGCTAAATCTGGATTTTTGC+CGG | - | chr4_1:16394081-16394100 | Msa0537690:intron | 40.0% |
| !!! | CCGGTTGACCATTTTAACTA+AGG | - | chr4_1:16394100-16394119 | Msa0537690:intron | 40.0% |
| TGAAGCGCAAACATAGAACA+GGG | + | chr4_1:16394215-16394234 | None:intergenic | 40.0% | |
| ATGAAGCGCAAACATAGAAC+AGG | + | chr4_1:16394216-16394235 | None:intergenic | 40.0% | |
| TCATAGCTGGCTGATATGTT+TGG | - | chr4_1:16394232-16394251 | Msa0537690:intron | 40.0% | |
| AAGCCAAACACCAATCCAAA+AGG | - | chr4_1:16394748-16394767 | Msa0537690:intron | 40.0% | |
| CTGTTACAATTTGATGCAGC+AGG | - | chr4_1:16394814-16394833 | Msa0537690:intron | 40.0% | |
| AGACACGCAGTCATATTTAG+TGG | + | chr4_1:16394867-16394886 | None:intergenic | 40.0% | |
| TCATCAACAACTAAACGTGC+TGG | - | chr4_1:16394895-16394914 | Msa0537690:intron | 40.0% | |
| GAGAGTGAGGAAATCAATGA+TGG | - | chr4_1:16395115-16395134 | Msa0537690:intron | 40.0% | |
| !! | ATTGTGTCGATTCCTAACAC+AGG | - | chr4_1:16395153-16395172 | Msa0537690:intron | 40.0% |
| CAACACATGGTATCATTTCC+AGG | + | chr4_1:16395229-16395248 | None:intergenic | 40.0% | |
| ACATACGACACAACAACACA+TGG | + | chr4_1:16395242-16395261 | None:intergenic | 40.0% | |
| !!! | CTTTAGGTTTTGAAACTGCG+AGG | - | chr4_1:16395431-16395450 | Msa0537690:intron | 40.0% |
| CTTCTGCGATGTTCATTATC+CGG | + | chr4_1:16395472-16395491 | None:intergenic | 40.0% | |
| AATGAACATCGCAGAAGAAG+AGG | - | chr4_1:16395475-16395494 | Msa0537690:intron | 40.0% | |
| ! | TCCAAAGTCTTGTGATGGAA+AGG | - | chr4_1:16395620-16395639 | Msa0537690:intron | 40.0% |
| TCCTTTCCATCACAAGACTT+TGG | + | chr4_1:16395624-16395643 | None:intergenic | 40.0% | |
| ! | TAGTCCGTTCTTTTACTGGA+AGG | - | chr4_1:16395661-16395680 | Msa0537690:intron | 40.0% |
| CAAGCCTTCCAGTAAAAGAA+CGG | + | chr4_1:16395668-16395687 | None:intergenic | 40.0% | |
| !! | GTTGTTTTCATGAGCTATCC+TGG | - | chr4_1:16396061-16396080 | Msa0537690:intron | 40.0% |
| CTTATTTCCATGAGCATTCC+AGG | + | chr4_1:16396082-16396101 | None:intergenic | 40.0% | |
| TGATGGAACTTAGGGAAAAC+TGG | - | chr4_1:16396515-16396534 | Msa0537690:intron | 40.0% | |
| ! | GACCGACTTAAAAACACAAC+TGG | - | chr4_1:16396552-16396571 | Msa0537690:intron | 40.0% |
| TTCTCGCACTTAATAGAGGT+TGG | - | chr4_1:16396659-16396678 | Msa0537690:intron | 40.0% | |
| TCAACTCTAACTTCAGAGGT+TGG | - | chr4_1:16396732-16396751 | Msa0537690:intron | 40.0% | |
| GAGGAAAAGATCCAATTAGG+AGG | + | chr4_1:16396946-16396965 | None:intergenic | 40.0% | |
| TGCAGAAATTGAAACCTGCA+TGG | - | chr4_1:16397057-16397076 | Msa0537690:intron | 40.0% | |
| ACTAGTGATCACTGATGAGA+GGG | + | chr4_1:16397233-16397252 | None:intergenic | 40.0% | |
| ! | TCATCAGTGATCACTAGTCT+CGG | - | chr4_1:16397235-16397254 | Msa0537690:intron | 40.0% |
| ! | ACTCTATCGTGTCGATAGAA+TGG | + | chr4_1:16397279-16397298 | None:intergenic | 40.0% |
| AGGTTACGAGATCAAAGTCT+TGG | - | chr4_1:16397584-16397603 | Msa0537690:intron | 40.0% | |
| CCCAAGAATCTTGAACTACA+AGG | - | chr4_1:16397817-16397836 | Msa0537690:intron | 40.0% | |
| AAATGCCGAAATTGTTAGGC+CGG | - | chr4_1:16398151-16398170 | Msa0537690:CDS | 40.0% | |
| !! | AATACATAAGTGGAGGTACC+GGG | + | chr4_1:16398179-16398198 | None:intergenic | 40.0% |
| ! | CAATACATAAGTGGAGGTAC+CGG | + | chr4_1:16398180-16398199 | None:intergenic | 40.0% |
| GCCTAACAATACATAAGTGG+AGG | + | chr4_1:16398186-16398205 | None:intergenic | 40.0% | |
| CCACTTATGTATTGTTAGGC+CGG | - | chr4_1:16398186-16398205 | Msa0537690:CDS | 40.0% | |
| AAACTTACACACACAAGTGG+AGG | + | chr4_1:16398221-16398240 | None:intergenic | 40.0% | |
| AGGATTGTGTTCATTGACAC+TGG | + | chr4_1:16398372-16398391 | None:intergenic | 40.0% | |
| TCAATGAACACAATCCTGCA+AGG | - | chr4_1:16398375-16398394 | Msa0537690:five_prime_UTR | 40.0% | |
| TGTCAACAAAAGATCCTTGC+AGG | + | chr4_1:16398392-16398411 | None:intergenic | 40.0% | |
| GGAGGAAGAAAGATGCAGAT+TGG | - | chr4_1:16393068-16393087 | Msa0537690:three_prime_UTR | 45.0% | |
| AAAGATGCAGATTGGAGAGG+TGG | - | chr4_1:16393076-16393095 | Msa0537690:three_prime_UTR | 45.0% | |
| AAGATGCAGATTGGAGAGGT+GGG | - | chr4_1:16393077-16393096 | Msa0537690:three_prime_UTR | 45.0% | |
| ! | TTCTCTCTTGGTGTGGACTT+AGG | - | chr4_1:16393100-16393119 | Msa0537690:three_prime_UTR | 45.0% |
| ! | TCTTGGTGTGGACTTAGGAA+TGG | - | chr4_1:16393105-16393124 | Msa0537690:three_prime_UTR | 45.0% |
| AATAACCCGCCTAGTGGTAT+TGG | - | chr4_1:16393282-16393301 | Msa0537690:three_prime_UTR | 45.0% | |
| ! | TTAACAAGGAGCACACTCTC+AGG | + | chr4_1:16393315-16393334 | None:intergenic | 45.0% |
| ! | TGAGAGTGTGCTCCTTGTTA+AGG | - | chr4_1:16393314-16393333 | Msa0537690:exon | 45.0% |
| ! | GTGCTCCTTGTTAAGGTGTT+AGG | - | chr4_1:16393321-16393340 | Msa0537690:exon | 45.0% |
| ! | ACAAGTGCTAGAGAGAGTGT+TGG | + | chr4_1:16393844-16393863 | None:intergenic | 45.0% |
| ! | GTGTGTCCCACCATTTTATG+TGG | - | chr4_1:16393886-16393905 | Msa0537690:intron | 45.0% |
| TGGGTCCCACATAAAATGGT+GGG | + | chr4_1:16393895-16393914 | None:intergenic | 45.0% | |
| ATGGGTCCCACATAAAATGG+TGG | + | chr4_1:16393896-16393915 | None:intergenic | 45.0% | |
| TGGGACCCATTTCAAAAGTG+CGG | - | chr4_1:16393906-16393925 | Msa0537690:intron | 45.0% | |
| !!! | AGGTCCCGCACTTTTGAAAT+GGG | + | chr4_1:16393914-16393933 | None:intergenic | 45.0% |
| !! | TAGGTCCCGCACTTTTGAAA+TGG | + | chr4_1:16393915-16393934 | None:intergenic | 45.0% |
| ! | TTTCGCGAGTTTTTCCTTCG+CGG | - | chr4_1:16394140-16394159 | Msa0537690:intron | 45.0% |
| CTATGTTTGCGCTTCATAGC+TGG | - | chr4_1:16394219-16394238 | Msa0537690:intron | 45.0% | |
| GCTGGCTGATATGTTTGGAT+TGG | - | chr4_1:16394237-16394256 | Msa0537690:intron | 45.0% | |
| ! | TGGACTAGAATCGGCTAGTT+AGG | - | chr4_1:16394284-16394303 | Msa0537690:intron | 45.0% |
| ! | GGACTAGAATCGGCTAGTTA+GGG | - | chr4_1:16394285-16394304 | Msa0537690:intron | 45.0% |
| TAGCGATTCTGACCTGTGTT+AGG | + | chr4_1:16395168-16395187 | None:intergenic | 45.0% | |
| ! | GGACTTCCAAAGTCTTGTGA+TGG | - | chr4_1:16395615-16395634 | Msa0537690:intron | 45.0% |
| ! | GACATAGAGCATCTCCATAG+AGG | - | chr4_1:16396287-16396306 | Msa0537690:intron | 45.0% |
| ACAAGAACCATCCTTACACC+TGG | - | chr4_1:16396470-16396489 | Msa0537690:intron | 45.0% | |
| GATGCTCTTTCGTTACCGAA+AGG | - | chr4_1:16396577-16396596 | Msa0537690:intron | 45.0% | |
| CATGTCGACCATTCGATCTA+TGG | + | chr4_1:16396798-16396817 | None:intergenic | 45.0% | |
| !!! | TCCTTCAATGCTGTCGGTTT+TGG | - | chr4_1:16396854-16396873 | Msa0537690:intron | 45.0% |
| ! | TCCAAAACCGACAGCATTGA+AGG | + | chr4_1:16396858-16396877 | None:intergenic | 45.0% |
| !!! | GCTGTCGGTTTTGGATGAAA+TGG | - | chr4_1:16396863-16396882 | Msa0537690:intron | 45.0% |
| GACTAGTGATCACTGATGAG+AGG | + | chr4_1:16397234-16397253 | None:intergenic | 45.0% | |
| ATTCTTTCAGGGGCTTGAGT+AGG | - | chr4_1:16397384-16397403 | Msa0537690:intron | 45.0% | |
| ! | GGCATCTTGTTTCTTCTGCT+GGG | + | chr4_1:16397411-16397430 | None:intergenic | 45.0% |
| ! | AGGCATCTTGTTTCTTCTGC+TGG | + | chr4_1:16397412-16397431 | None:intergenic | 45.0% |
| TACACTTACCATGGCAGCAT+AGG | + | chr4_1:16397432-16397451 | None:intergenic | 45.0% | |
| TCTAGAAGTCCTAGCTCAAC+TGG | - | chr4_1:16398126-16398145 | Msa0537690:CDS | 45.0% | |
| GGCATTTAACCAGTTGAGCT+AGG | + | chr4_1:16398138-16398157 | None:intergenic | 45.0% | |
| !! | ATACATAAGTGGAGGTACCG+GGG | + | chr4_1:16398178-16398197 | None:intergenic | 45.0% |
| CCGGCCTAACAATACATAAG+TGG | + | chr4_1:16398189-16398208 | None:intergenic | 45.0% | |
| AAGAGTTTCAAGGGTGGCAC+TGG | + | chr4_1:16392935-16392954 | None:intergenic | 50.0% | |
| GAGTGCAAGAGTTTCAAGGG+TGG | + | chr4_1:16392941-16392960 | None:intergenic | 50.0% | |
| AACTTCCTCCAAACGCGCTT+CGG | - | chr4_1:16393047-16393066 | Msa0537690:intron | 50.0% | |
| GACTTAGGAATGGCTCGTAC+TGG | - | chr4_1:16393115-16393134 | Msa0537690:three_prime_UTR | 50.0% | |
| ACTGGCATTGCTCTCAGCAA+AGG | - | chr4_1:16393133-16393152 | Msa0537690:three_prime_UTR | 50.0% | |
| TCTCTCAATAACCCGCCTAG+TGG | - | chr4_1:16393276-16393295 | Msa0537690:three_prime_UTR | 50.0% | |
| CCAAACCAATACCACTAGGC+GGG | + | chr4_1:16393290-16393309 | None:intergenic | 50.0% | |
| CCCAAACCAATACCACTAGG+CGG | + | chr4_1:16393291-16393310 | None:intergenic | 50.0% | |
| !! | CCGCCTAGTGGTATTGGTTT+GGG | - | chr4_1:16393288-16393307 | Msa0537690:three_prime_UTR | 50.0% |
| GGTCCCAAACCAATACCACT+AGG | + | chr4_1:16393294-16393313 | None:intergenic | 50.0% | |
| TCGATTCTCCCGTGCCAATT+TGG | - | chr4_1:16393345-16393364 | Msa0537690:CDS | 50.0% | |
| CGATTCTCCCGTGCCAATTT+GGG | - | chr4_1:16393346-16393365 | Msa0537690:CDS | 50.0% | |
| TTAGCCCACCCAAATTGGCA+CGG | + | chr4_1:16393357-16393376 | None:intergenic | 50.0% | |
| ! | GGGACCCATTTCAAAAGTGC+GGG | - | chr4_1:16393907-16393926 | Msa0537690:intron | 50.0% |
| ATACAGGCTATTCACCGCGA+AGG | + | chr4_1:16394157-16394176 | None:intergenic | 50.0% | |
| CAATTTGATGCAGCAGGCTC+TGG | - | chr4_1:16394820-16394839 | Msa0537690:intron | 50.0% | |
| ! | GGCTCTGGCTCGTTATGAAA+AGG | - | chr4_1:16394835-16394854 | Msa0537690:intron | 50.0% |
| ACATCGCAGAAGAAGAGGTC+TGG | - | chr4_1:16395480-16395499 | Msa0537690:intron | 50.0% | |
| TTGCTAATCGAGCTGCTGAG+AGG | - | chr4_1:16395685-16395704 | Msa0537690:intron | 50.0% | |
| ! | AAAATGCTCTGGGCTCTGTC+TGG | - | chr4_1:16395945-16395964 | Msa0537690:intron | 50.0% |
| GAGCTATCCTGGAATGCTCA+TGG | - | chr4_1:16396072-16396091 | Msa0537690:intron | 50.0% | |
| GCGCAAGCTTACTCCTATGA+TGG | - | chr4_1:16396498-16396517 | Msa0537690:intron | 50.0% | |
| ATCAGCCGCCATAGATCGAA+TGG | - | chr4_1:16396787-16396806 | Msa0537690:intron | 50.0% | |
| GTCGACCATTCGATCTATGG+CGG | + | chr4_1:16396795-16396814 | None:intergenic | 50.0% | |
| GTGATCACTGATGAGAGGGT+TGG | + | chr4_1:16397229-16397248 | None:intergenic | 50.0% | |
| ! | TCAGTGATCACTAGTCTCGG+AGG | - | chr4_1:16397238-16397257 | Msa0537690:intron | 50.0% |
| ACAAGATGCCTATGCTGCCA+TGG | - | chr4_1:16397421-16397440 | Msa0537690:intron | 50.0% | |
| ! | GGCACTGAGTTGACATCTCA+TGG | - | chr4_1:16397605-16397624 | Msa0537690:intron | 50.0% |
| ! | ACACACACAAGTGGAGGTAC+CGG | + | chr4_1:16398215-16398234 | None:intergenic | 50.0% |
| TTCTTCCTCCGAAGCGCGTT+TGG | + | chr4_1:16393058-16393077 | None:intergenic | 55.0% | |
| ! | TGGAGAGGTGGGTTCTCTCT+TGG | - | chr4_1:16393088-16393107 | Msa0537690:three_prime_UTR | 55.0% |
| ! | AGGTGGGTTCTCTCTTGGTG+TGG | - | chr4_1:16393093-16393112 | Msa0537690:three_prime_UTR | 55.0% |
| !! | CCCGCCTAGTGGTATTGGTT+TGG | - | chr4_1:16393287-16393306 | Msa0537690:three_prime_UTR | 55.0% |
| TTCTCCCGTGCCAATTTGGG+TGG | - | chr4_1:16393349-16393368 | Msa0537690:CDS | 55.0% | |
| TCTCCCGTGCCAATTTGGGT+GGG | - | chr4_1:16393350-16393369 | Msa0537690:CDS | 55.0% | |
| TAGCCCACCCAAATTGGCAC+GGG | + | chr4_1:16393356-16393375 | None:intergenic | 55.0% | |
| ACTGCGAGGACAGAAGCTTG+AGG | - | chr4_1:16395445-16395464 | Msa0537690:intron | 55.0% | |
| GAGGACAGAAGCTTGAGGTC+CGG | - | chr4_1:16395450-16395469 | Msa0537690:intron | 55.0% | |
| GCAGATGCCAGGTGTAAGGA+TGG | + | chr4_1:16396480-16396499 | None:intergenic | 55.0% | |
| TTGCGCAGATGCCAGGTGTA+AGG | + | chr4_1:16396484-16396503 | None:intergenic | 55.0% | |
| AGTAAGCTTGCGCAGATGCC+AGG | + | chr4_1:16396491-16396510 | None:intergenic | 55.0% | |
| GGGGTCCGGCCTAACAATTT+CGG | + | chr4_1:16398159-16398178 | None:intergenic | 55.0% | |
| GAAATTGTTAGGCCGGACCC+CGG | - | chr4_1:16398158-16398177 | Msa0537690:CDS | 55.0% | |
| TGTATTGTTAGGCCGGACCC+CGG | - | chr4_1:16398193-16398212 | Msa0537690:CDS | 55.0% | |
| !! | ACACACAAGTGGAGGTACCG+GGG | + | chr4_1:16398213-16398232 | None:intergenic | 55.0% |
| !! | CACACACAAGTGGAGGTACC+GGG | + | chr4_1:16398214-16398233 | None:intergenic | 55.0% |
| TTCCTCCAAACGCGCTTCGG+AGG | - | chr4_1:16393050-16393069 | Msa0537690:intron | 60.0% | |
| TTCCTCCGAAGCGCGTTTGG+AGG | + | chr4_1:16393055-16393074 | None:intergenic | 60.0% | |
| !! | TAAGTGGAGGTACCGGGGTC+CGG | + | chr4_1:16398173-16398192 | None:intergenic | 60.0% |
| !! | CAAGTGGAGGTACCGGGGTC+CGG | + | chr4_1:16398208-16398227 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 16392791 | 16398435 | 16392791 | ID=Msa0537690;Name=Msa0537690 |
| chr4_1 | mRNA | 16392791 | 16398435 | 16392791 | ID=Msa0537690-mRNA-1;Parent=Msa0537690;Name=Msa0537690-mRNA-1;_AED=0.20;_eAED=0.20;_QI=114|0.71|0.87|0.87|0.85|0.75|8|506|251 |
| chr4_1 | exon | 16392791 | 16393022 | 16392791 | ID=Msa0537690-mRNA-1:exon:4939;Parent=Msa0537690-mRNA-1 |
| chr4_1 | exon | 16393058 | 16393463 | 16393058 | ID=Msa0537690-mRNA-1:exon:4938;Parent=Msa0537690-mRNA-1 |
| chr4_1 | exon | 16393784 | 16393832 | 16393784 | ID=Msa0537690-mRNA-1:exon:4937;Parent=Msa0537690-mRNA-1 |
| chr4_1 | exon | 16394410 | 16394478 | 16394410 | ID=Msa0537690-mRNA-1:exon:4936;Parent=Msa0537690-mRNA-1 |
| chr4_1 | exon | 16395520 | 16395632 | 16395520 | ID=Msa0537690-mRNA-1:exon:4935;Parent=Msa0537690-mRNA-1 |
| chr4_1 | exon | 16395730 | 16395789 | 16395730 | ID=Msa0537690-mRNA-1:exon:4934;Parent=Msa0537690-mRNA-1 |
| chr4_1 | exon | 16397891 | 16397950 | 16397891 | ID=Msa0537690-mRNA-1:exon:4933;Parent=Msa0537690-mRNA-1 |
| chr4_1 | exon | 16398049 | 16398435 | 16398049 | ID=Msa0537690-mRNA-1:exon:4932;Parent=Msa0537690-mRNA-1 |
| chr4_1 | five_prime_UTR | 16398322 | 16398435 | 16398322 | ID=Msa0537690-mRNA-1:five_prime_utr;Parent=Msa0537690-mRNA-1 |
| chr4_1 | CDS | 16398049 | 16398321 | 16398049 | ID=Msa0537690-mRNA-1:cds;Parent=Msa0537690-mRNA-1 |
| chr4_1 | CDS | 16397891 | 16397950 | 16397891 | ID=Msa0537690-mRNA-1:cds;Parent=Msa0537690-mRNA-1 |
| chr4_1 | CDS | 16395730 | 16395789 | 16395730 | ID=Msa0537690-mRNA-1:cds;Parent=Msa0537690-mRNA-1 |
| chr4_1 | CDS | 16395520 | 16395632 | 16395520 | ID=Msa0537690-mRNA-1:cds;Parent=Msa0537690-mRNA-1 |
| chr4_1 | CDS | 16394410 | 16394478 | 16394410 | ID=Msa0537690-mRNA-1:cds;Parent=Msa0537690-mRNA-1 |
| chr4_1 | CDS | 16393784 | 16393832 | 16393784 | ID=Msa0537690-mRNA-1:cds;Parent=Msa0537690-mRNA-1 |
| chr4_1 | CDS | 16393332 | 16393463 | 16393332 | ID=Msa0537690-mRNA-1:cds;Parent=Msa0537690-mRNA-1 |
| chr4_1 | three_prime_UTR | 16393058 | 16393331 | 16393058 | ID=Msa0537690-mRNA-1:three_prime_utr;Parent=Msa0537690-mRNA-1 |
| chr4_1 | three_prime_UTR | 16392791 | 16393022 | 16392791 | ID=Msa0537690-mRNA-1:three_prime_utr;Parent=Msa0537690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
