AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0073390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073390 MtrunA17_Chr1g0180761 97.908 239 5 0 1 239 1 239 5.74e-177 485
Msa0073390 MtrunA17_Chr5g0415351 90.435 115 7 1 42 156 12 122 3.12e-68 206
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073390 AT5G52970.2 79.006 181 36 1 59 239 45 223 3.84e-104 301
Msa0073390 AT5G52970.1 79.006 181 36 1 59 239 45 223 3.84e-104 301

Find 65 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATATTATGCAGAATTTA+AGG 0.135967 1_2:+46952250 Msa0073390:three_prime_UTR
GTTTGGCTGTCAAAGATTTC+TGG 0.192590 1_2:+46951264 Msa0073390:CDS
TTTAATTTCGTTGTATAAAT+AGG 0.217325 1_2:+46952328 Msa0073390:three_prime_UTR
TGGACATCCCACGTAGTTTC+TGG 0.229398 1_2:+46951753 Msa0073390:CDS
AATTCTTTAGGAAGCAATTC+TGG 0.270333 1_2:-46950149 None:intergenic
TAAAGGTTTGGAGTGAATTT+TGG 0.276456 1_2:-46949942 None:intergenic
TAACAAACAAGTTTCCAAAA+AGG 0.279430 1_2:+46949733 None:intergenic
AGGATTTAAGTTGAGAGTTT+TGG 0.282622 1_2:+46951124 Msa0073390:CDS
CTCTCACTTTGTTTATTATT+CGG 0.284372 1_2:+46949986 Msa0073390:CDS
ATGACTGTACTAAATTCTTT+AGG 0.298192 1_2:-46950161 None:intergenic
GATCATAAACCTGGAGTATC+AGG 0.324214 1_2:-46951158 None:intergenic
CTGGAGTATCAGGATAGTTC+TGG 0.327962 1_2:-46951148 None:intergenic
ATGTTAGTAATACATATTAC+AGG 0.340824 1_2:+46952288 Msa0073390:three_prime_UTR
CTTAGTGTTTCCTTACTCAT+TGG 0.360804 1_2:+46952474 Msa0073390:three_prime_UTR
TGTTGGTGCTACCGTTGATT+TGG 0.370930 1_2:+46951733 Msa0073390:CDS
ATGAAATCTGCTGTTTAAAC+TGG 0.373630 1_2:+46952410 Msa0073390:three_prime_UTR
GAACTGAACATAACGTATAA+AGG 0.385383 1_2:+46952202 Msa0073390:exon
CTTAATACATCCAATGAGTA+AGG 0.405947 1_2:-46952484 None:intergenic
TAGAGCAAAATGTAAAGGTT+TGG 0.407203 1_2:-46949954 None:intergenic
ATCTATTGAGTCAGCAGTTA+TGG 0.410545 1_2:+46952121 Msa0073390:CDS
AGTACAGTCATTGATGTTGC+GGG 0.414343 1_2:+46950173 Msa0073390:CDS
GCTGATCTTGAAAAGGATAC+AGG 0.427812 1_2:+46951104 Msa0073390:CDS
GTGATATATATACTTTCAAC+AGG 0.439643 1_2:-46952552 None:intergenic
TTTGTTGCTGATCCCACGTT+CGG 0.445049 1_2:+46951311 Msa0073390:CDS
GAAGACGAGGTGAGTGTTGT+GGG 0.446729 1_2:-46949829 None:intergenic
AGTCGTTTGGCAGGCAAGTA+CGG 0.456265 1_2:+46951776 Msa0073390:CDS
GTTGCTTGAGAGAACCAGTT+GGG 0.457347 1_2:+46952153 Msa0073390:CDS
GAACAATTATTAGCCCCAAC+TGG 0.470077 1_2:-46952167 None:intergenic
GAGTGAAGAAATGATAGAAT+TGG 0.472998 1_2:-46949918 None:intergenic
AATATATTGAATTTCAATGT+TGG 0.475240 1_2:+46951716 Msa0073390:CDS
GTCGTTTGGCAGGCAAGTAC+GGG 0.480706 1_2:+46951777 Msa0073390:CDS
CAGTGTATTCATCTTAAGCT+AGG 0.484777 1_2:+46952433 Msa0073390:three_prime_UTR
CATAGATTCTTTACCGAACG+TGG 0.484793 1_2:-46951324 None:intergenic
ACGTAGTTTCTGGAGTCGTT+TGG 0.491354 1_2:+46951763 Msa0073390:CDS
TGGAGTATCAGGATAGTTCT+GGG 0.496693 1_2:-46951147 None:intergenic
TGTTGTTGTGTGATGAAGAA+AGG 0.498143 1_2:-46949886 None:intergenic
AGTTTCTGGAGTCGTTTGGC+AGG 0.509185 1_2:+46951767 Msa0073390:CDS
AGAGATTGCTGATCTTGAAA+AGG 0.515456 1_2:+46951097 Msa0073390:CDS
TAGTACAGTCATTGATGTTG+CGG 0.524277 1_2:+46950172 Msa0073390:CDS
GTTAGAGATATGAATGATGA+TGG 0.525806 1_2:-46949803 None:intergenic
GGGATTCCTCTCCGATGGAC+AGG 0.530524 1_2:+46950193 Msa0073390:CDS
CCAGATAGAGCAAAATGTAA+AGG 0.537019 1_2:-46949959 None:intergenic
GCTGAGGCTGCTACTAAAGC+TGG 0.540195 1_2:+46950116 Msa0073390:CDS
TGAAGACGAGGTGAGTGTTG+TGG 0.541473 1_2:-46949830 None:intergenic
TCACTTTGTTTATTATTCGG+AGG 0.545968 1_2:+46949989 Msa0073390:CDS
CAGAACTATCCTGATACTCC+AGG 0.561162 1_2:+46951149 Msa0073390:CDS
GTTGCGGGATTCCTCTCCGA+TGG 0.573007 1_2:+46950188 Msa0073390:CDS
CGAATAATAAACAAAGTGAG+AGG 0.586080 1_2:-46949985 None:intergenic
AGTGTATTCATCTTAAGCTA+GGG 0.596065 1_2:+46952434 Msa0073390:three_prime_UTR
AATTAAAATACATTGCATTG+TGG 0.609328 1_2:-46952312 None:intergenic
TTGTGAAGAAGATGATGAAG+AGG 0.620282 1_2:-46949779 None:intergenic
TGGGGCTAATAATTGTTCTG+AGG 0.629810 1_2:+46952172 Msa0073390:CDS
AAACAAGGCTACCTGTCCAT+CGG 0.630130 1_2:-46950204 None:intergenic
GAATAATAAACAAAGTGAGA+GGG 0.632997 1_2:-46949984 None:intergenic
ATAGATTCTTTACCGAACGT+GGG 0.643008 1_2:-46951323 None:intergenic
TGAACATAACGTATAAAGGA+CGG 0.647930 1_2:+46952206 Msa0073390:three_prime_UTR
AGTTGCTTGAGAGAACCAGT+TGG 0.654577 1_2:+46952152 Msa0073390:CDS
ACGTGGGATGTCCAAATCAA+CGG 0.656283 1_2:-46951744 None:intergenic
TTGCTTGAGAGAACCAGTTG+GGG 0.659543 1_2:+46952154 Msa0073390:CDS
GGTAGGAGCTGAAATTGCTG+AGG 0.669051 1_2:+46950100 Msa0073390:intron
TGTTAGTAATACATATTACA+GGG 0.669074 1_2:+46952289 Msa0073390:three_prime_UTR
AAACGACTCCAGAAACTACG+TGG 0.678963 1_2:-46951761 None:intergenic
AGGCTACCTGTCCATCGGAG+AGG 0.693509 1_2:-46950199 None:intergenic
TGTGATAATGTTTGAAGACG+AGG 0.696826 1_2:-46949842 None:intergenic
AACGACTCCAGAAACTACGT+GGG 0.720842 1_2:-46951760 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTGAAAATTCTTGAATT+TGG + chr1_2:46950079-46950098 Msa0073390:intron 15.0%
!!! GAAATATAAAGATTTGATTT+TGG - chr1_2:46950732-46950751 None:intergenic 15.0%
!! AATATATTGAATTTCAATGT+TGG + chr1_2:46951716-46951735 Msa0073390:CDS 15.0%
!! ATTATATTATGCAGAATTTA+AGG + chr1_2:46952250-46952269 Msa0073390:three_prime_UTR 15.0%
!!! TTTAATTTCGTTGTATAAAT+AGG + chr1_2:46952328-46952347 Msa0073390:three_prime_UTR 15.0%
!!! TTAAGTTTTTTATCCAAACA+AGG - chr1_2:46950222-46950241 None:intergenic 20.0%
!!! ATCAAATCTTTATATTTCTG+TGG + chr1_2:46950734-46950753 Msa0073390:intron 20.0%
!!! TTTATATTTCTGTGGAATTT+GGG + chr1_2:46950742-46950761 Msa0073390:intron 20.0%
!! ATAATGTACTATTATTATGC+AGG + chr1_2:46951242-46951261 Msa0073390:intron 20.0%
!!! TAAGTTGAACTACAAATTTA+AGG - chr1_2:46951481-46951500 None:intergenic 20.0%
!! CATACAAATAACAATATCAA+TGG + chr1_2:46951881-46951900 Msa0073390:intron 20.0%
!!! TAATGTGTCTATTCTTTTAT+TGG + chr1_2:46952034-46952053 Msa0073390:intron 20.0%
!! TAATCATAATGATCTGATAA+TGG + chr1_2:46952067-46952086 Msa0073390:intron 20.0%
!! ATGTTAGTAATACATATTAC+AGG + chr1_2:46952288-46952307 Msa0073390:three_prime_UTR 20.0%
!! TGTTAGTAATACATATTACA+GGG + chr1_2:46952289-46952308 Msa0073390:three_prime_UTR 20.0%
!! AATTAAAATACATTGCATTG+TGG - chr1_2:46952315-46952334 None:intergenic 20.0%
! AACAAACAAGTTTCCAAAAA+GGG + chr1_2:46949734-46949753 Msa0073390:five_prime_UTR 25.0%
! GAATAATAAACAAAGTGAGA+GGG - chr1_2:46949987-46950006 None:intergenic 25.0%
!! CTCTCACTTTGTTTATTATT+CGG + chr1_2:46949986-46950005 Msa0073390:CDS 25.0%
! TGAAAATTCTTGAATTTGGT+AGG + chr1_2:46950083-46950102 Msa0073390:intron 25.0%
! ATGACTGTACTAAATTCTTT+AGG - chr1_2:46950164-46950183 None:intergenic 25.0%
! ATTAATTACTGGCATAAATG+GGG - chr1_2:46950587-46950606 None:intergenic 25.0%
! GATTAATTACTGGCATAAAT+GGG - chr1_2:46950588-46950607 None:intergenic 25.0%
! AGATTAATTACTGGCATAAA+TGG - chr1_2:46950589-46950608 None:intergenic 25.0%
!! GCTTATTTGAGATTAATTAC+TGG - chr1_2:46950598-46950617 None:intergenic 25.0%
!! CTTTATATTTCTGTGGAATT+TGG + chr1_2:46950741-46950760 Msa0073390:intron 25.0%
! AAAAGACTACTTATATGTCA+CGG - chr1_2:46950877-46950896 None:intergenic 25.0%
! TAAATTGATCATTCATGTTC+AGG + chr1_2:46951058-46951077 Msa0073390:intron 25.0%
!!! TAGAATGAAGTTTAACTTGA+AGG + chr1_2:46951417-46951436 Msa0073390:intron 25.0%
! TACCGATATAGGTAATATTA+AGG + chr1_2:46951671-46951690 Msa0073390:intron 25.0%
! CTCCTTAATATTACCTATAT+CGG - chr1_2:46951676-46951695 None:intergenic 25.0%
! TTGAAATTCAATATATTGCC+TGG - chr1_2:46951713-46951732 None:intergenic 25.0%
! GTGATATATATACTTTCAAC+AGG - chr1_2:46952555-46952574 None:intergenic 25.0%
GTTAGAGATATGAATGATGA+TGG - chr1_2:46949806-46949825 None:intergenic 30.0%
GAGTGAAGAAATGATAGAAT+TGG - chr1_2:46949921-46949940 None:intergenic 30.0%
!! TAAAGGTTTGGAGTGAATTT+TGG - chr1_2:46949945-46949964 None:intergenic 30.0%
TAGAGCAAAATGTAAAGGTT+TGG - chr1_2:46949957-46949976 None:intergenic 30.0%
CGAATAATAAACAAAGTGAG+AGG - chr1_2:46949988-46950007 None:intergenic 30.0%
! TCACTTTGTTTATTATTCGG+AGG + chr1_2:46949989-46950008 Msa0073390:CDS 30.0%
! AATTCTTTAGGAAGCAATTC+TGG - chr1_2:46950152-46950171 None:intergenic 30.0%
TTAATTACTGGCATAAATGG+GGG - chr1_2:46950586-46950605 None:intergenic 30.0%
TTACACTACATAGGTCTATT+TGG - chr1_2:46950625-46950644 None:intergenic 30.0%
AAACGACATTTACACTACAT+AGG - chr1_2:46950634-46950653 None:intergenic 30.0%
TTTAAATTACACGTTGATCC+TGG + chr1_2:46950684-46950703 Msa0073390:intron 30.0%
!!! AGGATTTAAGTTGAGAGTTT+TGG + chr1_2:46951124-46951143 Msa0073390:CDS 30.0%
ACGATATTCGCACAATTTAA+GGG + chr1_2:46951181-46951200 Msa0073390:intron 30.0%
GTACTATTATTATGCAGGTT+TGG + chr1_2:46951247-46951266 Msa0073390:intron 30.0%
TTAAGGCTAAAAACCATGTT+TGG - chr1_2:46951464-46951483 None:intergenic 30.0%
!!! AAGGTAAGCTCTACTTTTTT+TGG + chr1_2:46951821-46951840 Msa0073390:intron 30.0%
!! AAATAAGTTGCTAGCTTTAG+AGG - chr1_2:46951856-46951875 None:intergenic 30.0%
TGCTTATGCATATCAAATCA+CGG + chr1_2:46951934-46951953 Msa0073390:intron 30.0%
AAGTGAATAGAGTGTAAACT+GGG - chr1_2:46951987-46952006 None:intergenic 30.0%
GAATAGACACATTAAAATGC+AGG - chr1_2:46952028-46952047 None:intergenic 30.0%
GTTTAATACCAAACGAAACA+GGG + chr1_2:46952089-46952108 Msa0073390:intron 30.0%
GAACTGAACATAACGTATAA+AGG + chr1_2:46952202-46952221 Msa0073390:exon 30.0%
TGAACATAACGTATAAAGGA+CGG + chr1_2:46952206-46952225 Msa0073390:three_prime_UTR 30.0%
! ATGAAATCTGCTGTTTAAAC+TGG + chr1_2:46952410-46952429 Msa0073390:three_prime_UTR 30.0%
AGTGTATTCATCTTAAGCTA+GGG + chr1_2:46952434-46952453 Msa0073390:three_prime_UTR 30.0%
CTTAATACATCCAATGAGTA+AGG - chr1_2:46952487-46952506 None:intergenic 30.0%
GTTATGAACAAAAAGTCAGT+AGG - chr1_2:46952533-46952552 None:intergenic 30.0%
AACAAGTTTCCAAAAAGGGA+AGG + chr1_2:46949738-46949757 Msa0073390:five_prime_UTR 35.0%
TTGTGAAGAAGATGATGAAG+AGG - chr1_2:46949782-46949801 None:intergenic 35.0%
! TGTGATAATGTTTGAAGACG+AGG - chr1_2:46949845-46949864 None:intergenic 35.0%
TGTTGTTGTGTGATGAAGAA+AGG - chr1_2:46949889-46949908 None:intergenic 35.0%
CCAGATAGAGCAAAATGTAA+AGG - chr1_2:46949962-46949981 None:intergenic 35.0%
! CCTTTACATTTTGCTCTATC+TGG + chr1_2:46949959-46949978 Msa0073390:CDS 35.0%
TAGTACAGTCATTGATGTTG+CGG + chr1_2:46950172-46950191 Msa0073390:CDS 35.0%
TAATTACTGGCATAAATGGG+GGG - chr1_2:46950585-46950604 None:intergenic 35.0%
CTACATAGGTCTATTTGGAT+TGG - chr1_2:46950620-46950639 None:intergenic 35.0%
TGACTACATACACGATGAAA+TGG - chr1_2:46950804-46950823 None:intergenic 35.0%
CTTGATATTATAGAGAACCG+CGG - chr1_2:46950952-46950971 None:intergenic 35.0%
AACAGTCGCGATAATTATTG+TGG - chr1_2:46950988-46951007 None:intergenic 35.0%
AGAGATTGCTGATCTTGAAA+AGG + chr1_2:46951097-46951116 Msa0073390:CDS 35.0%
GAATATCGTGATCATAAACC+TGG - chr1_2:46951170-46951189 None:intergenic 35.0%
CACGATATTCGCACAATTTA+AGG + chr1_2:46951180-46951199 Msa0073390:intron 35.0%
ATAGATTCTTTACCGAACGT+GGG - chr1_2:46951326-46951345 None:intergenic 35.0%
GAAGAACAACAGTAACAGAA+AGG - chr1_2:46951614-46951633 None:intergenic 35.0%
AAGAAGTGGAAATAACAGAG+AGG - chr1_2:46951636-46951655 None:intergenic 35.0%
TTCCACTTCTTTCTTCTTGA+TGG + chr1_2:46951645-46951664 Msa0073390:intron 35.0%
ATCCATCAAGAAGAAAGAAG+TGG - chr1_2:46951650-46951669 None:intergenic 35.0%
!!! GGAGTTTTTTTTTGTTGACC+AGG + chr1_2:46951692-46951711 Msa0073390:intron 35.0%
! AGTACGGGAACATTTTCTAT+TGG + chr1_2:46951792-46951811 Msa0073390:CDS 35.0%
GAAGTGAATAGAGTGTAAAC+TGG - chr1_2:46951988-46952007 None:intergenic 35.0%
GGTTTAATACCAAACGAAAC+AGG + chr1_2:46952088-46952107 Msa0073390:intron 35.0%
ATCTATTGAGTCAGCAGTTA+TGG + chr1_2:46952121-46952140 Msa0073390:CDS 35.0%
CAGTGTATTCATCTTAAGCT+AGG + chr1_2:46952433-46952452 Msa0073390:three_prime_UTR 35.0%
CTTAGTGTTTCCTTACTCAT+TGG + chr1_2:46952474-46952493 Msa0073390:three_prime_UTR 35.0%
! CATCATTGTCCTTCCCTTTT+TGG - chr1_2:46949750-46949769 None:intergenic 40.0%
CAAAAAGGGAAGGACAATGA+TGG + chr1_2:46949748-46949767 Msa0073390:exon 40.0%
AGTACAGTCATTGATGTTGC+GGG + chr1_2:46950173-46950192 Msa0073390:CDS 40.0%
!!! TTAATTTTGACTCCGTCGTC+CGG + chr1_2:46950499-46950518 Msa0073390:intron 40.0%
TGAGCTAAGGGAAAAAGAGT+TGG - chr1_2:46950543-46950562 None:intergenic 40.0%
AATTACTGGCATAAATGGGG+GGG - chr1_2:46950584-46950603 None:intergenic 40.0%
TACACGTTGATCCTGGATAT+TGG + chr1_2:46950691-46950710 Msa0073390:intron 40.0%
ACACGTTGATCCTGGATATT+GGG + chr1_2:46950692-46950711 Msa0073390:intron 40.0%
TACACGATGAAATGGAAGCA+TGG - chr1_2:46950796-46950815 None:intergenic 40.0%
! GTTTTCAGAAAGCTCTGCAA+TGG + chr1_2:46950839-46950858 Msa0073390:intron 40.0%
TAGAGAACCGCGGTAAAATA+CGG - chr1_2:46950942-46950961 None:intergenic 40.0%
CGCGGTTCTCTATAATATCA+AGG + chr1_2:46950950-46950969 Msa0073390:intron 40.0%
GCTGATCTTGAAAAGGATAC+AGG + chr1_2:46951104-46951123 Msa0073390:CDS 40.0%
! TGGAGTATCAGGATAGTTCT+GGG - chr1_2:46951150-46951169 None:intergenic 40.0%
! GATCATAAACCTGGAGTATC+AGG - chr1_2:46951161-46951180 None:intergenic 40.0%
GTTTGGCTGTCAAAGATTTC+TGG + chr1_2:46951264-46951283 Msa0073390:CDS 40.0%
CATAGATTCTTTACCGAACG+TGG - chr1_2:46951327-46951346 None:intergenic 40.0%
! AGAGTTTTTGCCTCCAAACA+TGG + chr1_2:46951448-46951467 Msa0073390:intron 40.0%
AGGCTAAAAACCATGTTTGG+AGG - chr1_2:46951461-46951480 None:intergenic 40.0%
ACAACAGTAACAGAAAGGTG+TGG - chr1_2:46951609-46951628 None:intergenic 40.0%
! CTTGATGGATCTACCGATAT+AGG + chr1_2:46951660-46951679 Msa0073390:intron 40.0%
! ACGGGAACATTTTCTATTGG+AGG + chr1_2:46951795-46951814 Msa0073390:CDS 40.0%
! CGGGAACATTTTCTATTGGA+GGG + chr1_2:46951796-46951815 Msa0073390:CDS 40.0%
! CATTTTCTATTGGAGGGAGA+AGG + chr1_2:46951802-46951821 Msa0073390:CDS 40.0%
ACTCTATTCACTTCAGACGA+AGG + chr1_2:46951994-46952013 Msa0073390:intron 40.0%
GAACAATTATTAGCCCCAAC+TGG - chr1_2:46952170-46952189 None:intergenic 40.0%
TGGGGCTAATAATTGTTCTG+AGG + chr1_2:46952172-46952191 Msa0073390:CDS 40.0%
AAACAAGGCTACCTGTCCAT+CGG - chr1_2:46950207-46950226 None:intergenic 45.0%
!!! TAATTTTGACTCCGTCGTCC+GGG + chr1_2:46950500-46950519 Msa0073390:intron 45.0%
TAAGTTCAAAACCCGGACGA+CGG - chr1_2:46950514-46950533 None:intergenic 45.0%
GAGGTCCTAAGTTCAAAACC+CGG - chr1_2:46950521-46950540 None:intergenic 45.0%
GCTAAGGGAAAAAGAGTTGG+AGG - chr1_2:46950540-46950559 None:intergenic 45.0%
!! GCTGAACTGGTTTGAGCTAA+GGG - chr1_2:46950555-46950574 None:intergenic 45.0%
!! AGCTGAACTGGTTTGAGCTA+AGG - chr1_2:46950556-46950575 None:intergenic 45.0%
CTCTGTCTTACCCAATATCC+AGG - chr1_2:46950705-46950724 None:intergenic 45.0%
! ATTGTGGCCGTATTTTACCG+CGG + chr1_2:46950932-46950951 Msa0073390:intron 45.0%
! CTGGAGTATCAGGATAGTTC+TGG - chr1_2:46951151-46951170 None:intergenic 45.0%
CAGAACTATCCTGATACTCC+AGG + chr1_2:46951149-46951168 Msa0073390:CDS 45.0%
CGCACAATTTAAGGGTTGAG+TGG + chr1_2:46951189-46951208 Msa0073390:intron 45.0%
TTTGTTGCTGATCCCACGTT+CGG + chr1_2:46951311-46951330 Msa0073390:CDS 45.0%
!! TGTTGGTGCTACCGTTGATT+TGG + chr1_2:46951733-46951752 Msa0073390:CDS 45.0%
ACGTGGGATGTCCAAATCAA+CGG - chr1_2:46951747-46951766 None:intergenic 45.0%
AACGACTCCAGAAACTACGT+GGG - chr1_2:46951763-46951782 None:intergenic 45.0%
AAACGACTCCAGAAACTACG+TGG - chr1_2:46951764-46951783 None:intergenic 45.0%
!! ACGTAGTTTCTGGAGTCGTT+TGG + chr1_2:46951763-46951782 Msa0073390:CDS 45.0%
CATCTTCACCCTGTTTCGTT+TGG - chr1_2:46952100-46952119 None:intergenic 45.0%
AGTTGCTTGAGAGAACCAGT+TGG + chr1_2:46952152-46952171 Msa0073390:CDS 45.0%
GTTGCTTGAGAGAACCAGTT+GGG + chr1_2:46952153-46952172 Msa0073390:CDS 45.0%
TTGCTTGAGAGAACCAGTTG+GGG + chr1_2:46952154-46952173 Msa0073390:CDS 45.0%
! GAAGACGAGGTGAGTGTTGT+GGG - chr1_2:46949832-46949851 None:intergenic 50.0%
! TGAAGACGAGGTGAGTGTTG+TGG - chr1_2:46949833-46949852 None:intergenic 50.0%
! AGGTGACACGACAGCGTTTT+TGG - chr1_2:46949869-46949888 None:intergenic 50.0%
GGTAGGAGCTGAAATTGCTG+AGG + chr1_2:46950100-46950119 Msa0073390:intron 50.0%
!! GATGGACAGGTAGCCTTGTT+TGG + chr1_2:46950206-46950225 Msa0073390:intron 50.0%
!!! GTCGTCCGGGTTTTGAACTT+AGG + chr1_2:46950513-46950532 Msa0073390:intron 50.0%
CCACAATCGCAGTCACATTG+CGG - chr1_2:46950919-46950938 None:intergenic 50.0%
TGGACATCCCACGTAGTTTC+TGG + chr1_2:46951753-46951772 Msa0073390:CDS 50.0%
!! AGTTTCTGGAGTCGTTTGGC+AGG + chr1_2:46951767-46951786 Msa0073390:CDS 50.0%
AGTCGTTTGGCAGGCAAGTA+CGG + chr1_2:46951776-46951795 Msa0073390:CDS 50.0%
GCTGAGGCTGCTACTAAAGC+TGG + chr1_2:46950116-46950135 Msa0073390:CDS 55.0%
ACTGGCATAAATGGGGGGGT+GGG - chr1_2:46950580-46950599 None:intergenic 55.0%
TACTGGCATAAATGGGGGGG+TGG - chr1_2:46950581-46950600 None:intergenic 55.0%
CCGCAATGTGACTGCGATTG+TGG + chr1_2:46950916-46950935 Msa0073390:intron 55.0%
GTCGTTTGGCAGGCAAGTAC+GGG + chr1_2:46951777-46951796 Msa0073390:CDS 55.0%
GTTGCGGGATTCCTCTCCGA+TGG + chr1_2:46950188-46950207 Msa0073390:CDS 60.0%
GGGATTCCTCTCCGATGGAC+AGG + chr1_2:46950193-46950212 Msa0073390:CDS 60.0%
AGGCTACCTGTCCATCGGAG+AGG - chr1_2:46950202-46950221 None:intergenic 60.0%
GGGGGGGTGGGTAGCTGAAC+TGG - chr1_2:46950568-46950587 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 46949734 46952582 46949734 ID=Msa0073390;Name=Msa0073390
chr1_2 mRNA 46949734 46952582 46949734 ID=Msa0073390-mRNA-1;Parent=Msa0073390;Name=Msa0073390-mRNA-1;_AED=0.06;_eAED=0.06;_QI=30|1|1|1|1|1|6|380|239
chr1_2 exon 46949734 46950010 46949734 ID=Msa0073390-mRNA-1:exon:14266;Parent=Msa0073390-mRNA-1
chr1_2 exon 46950105 46950214 46950105 ID=Msa0073390-mRNA-1:exon:14267;Parent=Msa0073390-mRNA-1
chr1_2 exon 46951080 46951170 46951080 ID=Msa0073390-mRNA-1:exon:14268;Parent=Msa0073390-mRNA-1
chr1_2 exon 46951264 46951332 46951264 ID=Msa0073390-mRNA-1:exon:14269;Parent=Msa0073390-mRNA-1
chr1_2 exon 46951714 46951823 46951714 ID=Msa0073390-mRNA-1:exon:14270;Parent=Msa0073390-mRNA-1
chr1_2 exon 46952110 46952582 46952110 ID=Msa0073390-mRNA-1:exon:14271;Parent=Msa0073390-mRNA-1
chr1_2 five_prime_UTR 46949734 46949763 46949734 ID=Msa0073390-mRNA-1:five_prime_utr;Parent=Msa0073390-mRNA-1
chr1_2 CDS 46949764 46950010 46949764 ID=Msa0073390-mRNA-1:cds;Parent=Msa0073390-mRNA-1
chr1_2 CDS 46950105 46950214 46950105 ID=Msa0073390-mRNA-1:cds;Parent=Msa0073390-mRNA-1
chr1_2 CDS 46951080 46951170 46951080 ID=Msa0073390-mRNA-1:cds;Parent=Msa0073390-mRNA-1
chr1_2 CDS 46951264 46951332 46951264 ID=Msa0073390-mRNA-1:cds;Parent=Msa0073390-mRNA-1
chr1_2 CDS 46951714 46951823 46951714 ID=Msa0073390-mRNA-1:cds;Parent=Msa0073390-mRNA-1
chr1_2 CDS 46952110 46952202 46952110 ID=Msa0073390-mRNA-1:cds;Parent=Msa0073390-mRNA-1
chr1_2 three_prime_UTR 46952203 46952582 46952203 ID=Msa0073390-mRNA-1:three_prime_utr;Parent=Msa0073390-mRNA-1
Gene Sequence

>Msa0073390

ATGATGGTACATTATCCTCTTCATCATCTTCTTCACAATCCATCATCATTCATATCTCTAACATTCCCACAACACTCACCTCGTCTTCAAACATTATCACAGCCAAAAACGCTGTCGTGTCACCTTTCTTCATCACACAACAACAAATGTAGTTCCAATTCTATCATTTCTTCACTCACCAAAATTCACTCCAAACCTTTACATTTTGCTCTATCTGGAGCCCTCTCACTTTGTTTATTATTCGGAGGAGCTGAAATTGCTGAGGCTGCTACTAAAGCTGGTGTCAATAAGCCAGAATTGCTTCCTAAAGAATTTAGTACAGTCATTGATGTTGCGGGATTCCTCTCCGATGGACAGGAGAAAAGACTAGCGCAAGAGATTGCTGATCTTGAAAAGGATACAGGATTTAAGTTGAGAGTTTTGGCCCAGAACTATCCTGATACTCCAGGTTTGGCTGTCAAAGATTTCTGGCAAGTAGATGACAGTACAGTTGTCTTTGTTGCTGATCCCACGTTCGGCAATATATTGAATTTCAATGTTGGTGCTACCGTTGATTTGGACATCCCACGTAGTTTCTGGAGTCGTTTGGCAGGCAAGTACGGGAACATTTTCTATTGGAGGGAGAAGGGTGAAGATGCATCTATTGAGTCAGCAGTTATGGCAATTTCTAGTTGCTTGAGAGAACCAGTTGGGGCTAATAATTGTTCTGAGGTGAAATAG

Protein sequence

>Msa0073390

MMVHYPLHHLLHNPSSFISLTFPQHSPRLQTLSQPKTLSCHLSSSHNNKCSSNSIISSLTKIHSKPLHFALSGALSLCLLFGGAEIAEAATKAGVNKPELLPKEFSTVIDVAGFLSDGQEKRLAQEIADLEKDTGFKLRVLAQNYPDTPGLAVKDFWQVDDSTVVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNIFYWREKGEDASIESAVMAISSCLREPVGANNCSEVK*