Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538510 | RYR33127.1 | 71.350 | 363 | 70 | 4 | 159 | 487 | 45 | 407 | 3.48e-168 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538510 | sp|P10978|POLX_TOBAC | 35.833 | 360 | 189 | 5 | 163 | 485 | 42 | 396 | 1.45e-55 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538510 | A0A445B365 | 71.350 | 363 | 70 | 4 | 159 | 487 | 45 | 407 | 1.66e-168 | 520 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0538460 | Msa0538510 | 0.970434 | 1.302696e-131 | -8.615850e-47 |
| Msa0538510 | Msa0938190 | 0.817449 | 3.279323e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538510 | MtrunA17_Chr4g0013161 | 89.308 | 159 | 17 | 0 | 1 | 159 | 1 | 159 | 5.78e-82 | 252 |
| Msa0538510 | MtrunA17_Chr7g0244491 | 56.707 | 164 | 63 | 4 | 1 | 159 | 1 | 161 | 2.86e-37 | 135 |
| Msa0538510 | MtrunA17_Chr8g0351181 | 28.926 | 363 | 211 | 6 | 162 | 485 | 40 | 394 | 3.03e-35 | 136 |
| Msa0538510 | MtrunA17_Chr8g0391561 | 21.867 | 407 | 274 | 6 | 120 | 484 | 30 | 434 | 7.35e-25 | 107 |
| Msa0538510 | MtrunA17_Chr5g0438101 | 51.546 | 97 | 40 | 2 | 11 | 101 | 15 | 110 | 1.17e-21 | 92.4 |
| Msa0538510 | MtrunA17_Chr8g0342611 | 39.850 | 133 | 77 | 2 | 175 | 305 | 53 | 184 | 1.26e-20 | 90.5 |
| Msa0538510 | MtrunA17_Chr4g0029381 | 29.944 | 177 | 91 | 4 | 205 | 371 | 1 | 154 | 6.21e-17 | 79.3 |
| Msa0538510 | MtrunA17_Chr3g0087561 | 33.582 | 134 | 66 | 3 | 357 | 468 | 37 | 169 | 5.19e-14 | 70.5 |
| Msa0538510 | MtrunA17_Chr3g0114561 | 46.809 | 94 | 43 | 1 | 11 | 97 | 19 | 112 | 2.58e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 97 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAATAATACCCTCTTATT+TGG | 0.126508 | 4_1:-17886751 | None:intergenic |
| TGCAAAATTGTTATGGAAAA+TGG | 0.165276 | 4_1:+17887140 | Msa0538510:CDS |
| CATCTTGCATGCATACAATT+TGG | 0.180856 | 4_1:-17886317 | None:intergenic |
| CTGTTGCAGTTCCATTTGTT+TGG | 0.199775 | 4_1:+17882269 | Msa0538510:CDS |
| TGAGAGAGATGTTGCGTTCT+TGG | 0.210667 | 4_1:+17886204 | Msa0538510:CDS |
| GTAGTAAACCACTTCCTATT+TGG | 0.227850 | 4_1:-17886936 | None:intergenic |
| AAAATCTTCCAAGTATCTTT+TGG | 0.274979 | 4_1:+17882408 | Msa0538510:CDS |
| GGTCGTCCCCGAGATAATTT+TGG | 0.290058 | 4_1:-17882542 | None:intergenic |
| GTCTTTAGAGAATGTATGTT+TGG | 0.305846 | 4_1:-17882311 | None:intergenic |
| TGTTGCAGTTCCATTTGTTT+GGG | 0.310743 | 4_1:+17882270 | Msa0538510:CDS |
| ACTACCTACCAAAGTATAAA+TGG | 0.319288 | 4_1:+17886954 | Msa0538510:CDS |
| AAAGGGATGACTAATGAAAA+AGG | 0.321666 | 4_1:+17886631 | Msa0538510:CDS |
| CTTGGTATACTAGAGGAAAA+TGG | 0.327765 | 4_1:+17887116 | Msa0538510:CDS |
| TGGAGGAAGGCAACTCAATC+TGG | 0.332793 | 4_1:+17886338 | Msa0538510:CDS |
| AAATGGTTGCAAAATTGTTA+TGG | 0.336791 | 4_1:+17887133 | Msa0538510:CDS |
| TCTCTCAAGGCATAAGATTA+TGG | 0.338340 | 4_1:-17886188 | None:intergenic |
| AATGTATGTTTGGGAGTTCC+AGG | 0.349044 | 4_1:-17882301 | None:intergenic |
| TGGTAAGTGGATGCTTGATT+CGG | 0.351031 | 4_1:+17886893 | Msa0538510:CDS |
| ACTTCCTATTTGGGCACATA+TGG | 0.356788 | 4_1:-17886926 | None:intergenic |
| TAGTAAACCACTTCCTATTT+GGG | 0.362719 | 4_1:-17886935 | None:intergenic |
| ATTACGTCAACAAGTTTGAT+AGG | 0.373033 | 4_1:+17886362 | Msa0538510:CDS |
| CAAGGATTCTTTGATACTAA+AGG | 0.379240 | 4_1:+17886613 | Msa0538510:CDS |
| AAGCACATTGTCCAAATAAG+AGG | 0.383114 | 4_1:+17886740 | Msa0538510:CDS |
| TCCTCATCCTTCTTACTCAT+AGG | 0.393031 | 4_1:-17886133 | None:intergenic |
| GGTAAGTGGATGCTTGATTC+GGG | 0.396161 | 4_1:+17886894 | Msa0538510:CDS |
| GAGTAAGAAGGATGAGGATT+GGG | 0.404144 | 4_1:+17886138 | Msa0538510:CDS |
| AAGGATTCTTTGATACTAAA+GGG | 0.406954 | 4_1:+17886614 | Msa0538510:CDS |
| TGAGACATGTTCCAAATTTG+CGG | 0.418291 | 4_1:+17887078 | Msa0538510:CDS |
| TCTAAAAGATGGGTGACAAT+TGG | 0.418920 | 4_1:-17882242 | None:intergenic |
| CACACCATATGTGCCCAAAT+AGG | 0.423092 | 4_1:+17886922 | Msa0538510:CDS |
| GATAAGAAGGTGGAGGTGTA+AGG | 0.431589 | 4_1:-17882345 | None:intergenic |
| GATTCTTCCAAAATTATCTC+GGG | 0.433513 | 4_1:+17882535 | Msa0538510:CDS |
| TCTTTAGAGAATGTATGTTT+GGG | 0.435030 | 4_1:-17882310 | None:intergenic |
| TAGGATTATATCAGAGTTGA+AGG | 0.435315 | 4_1:+17886381 | Msa0538510:CDS |
| TGGTTCGTTGGTTGTGATGA+AGG | 0.436916 | 4_1:+17887181 | Msa0538510:CDS |
| AATGAAGAAGTAACGGCGGC+TGG | 0.438520 | 4_1:+17886229 | Msa0538510:CDS |
| AAACAATGCCAAAAGATACT+TGG | 0.453513 | 4_1:-17882416 | None:intergenic |
| GCAACAGAAACTCTAAAAGA+TGG | 0.459895 | 4_1:-17882253 | None:intergenic |
| TGAGTAAGAAGGATGAGGAT+TGG | 0.476341 | 4_1:+17886137 | Msa0538510:CDS |
| ATAAGAAGGTGGAGGTGTAA+GGG | 0.477682 | 4_1:-17882344 | None:intergenic |
| AGATTCTTCCAAAATTATCT+CGG | 0.480227 | 4_1:+17882534 | Msa0538510:CDS |
| GGTTGAGATTCCCAAACAAA+TGG | 0.489006 | 4_1:-17882280 | None:intergenic |
| AGAAGAAAATTCTTAAGCTA+TGG | 0.489299 | 4_1:+17882574 | Msa0538510:CDS |
| CAACCATGCCGGTAAAATTG+AGG | 0.490792 | 4_1:+17886998 | Msa0538510:CDS |
| ATCTAAATCTACACCTCTTG+TGG | 0.491204 | 4_1:+17886678 | Msa0538510:CDS |
| TTTCAGCAGATTACTTTCAA+AGG | 0.492999 | 4_1:+17882213 | Msa0538510:CDS |
| CAGTTCCACCATTTATACTT+TGG | 0.497631 | 4_1:-17886962 | None:intergenic |
| TAAGAAGGTGGAGGTGTAAG+GGG | 0.511212 | 4_1:-17882343 | None:intergenic |
| AACCATGCCGGTAAAATTGA+GGG | 0.516202 | 4_1:+17886999 | Msa0538510:CDS |
| GGAACATGTCTCACATTCAT+CGG | 0.519762 | 4_1:-17887068 | None:intergenic |
| AAGTAACGGCGGCTGGGGTG+TGG | 0.521105 | 4_1:+17886236 | Msa0538510:CDS |
| GTTCAAACATTGATGCTTGT+GGG | 0.522418 | 4_1:+17886481 | Msa0538510:CDS |
| TGAAGAAGTAACGGCGGCTG+GGG | 0.523031 | 4_1:+17886231 | Msa0538510:CDS |
| GCCGGTAAAATTGAGGGGTA+TGG | 0.524234 | 4_1:+17887005 | Msa0538510:CDS |
| AAAGCAATAACATGAGTGCT+TGG | 0.529489 | 4_1:-17886432 | None:intergenic |
| ATGAAGAAGTAACGGCGGCT+GGG | 0.529623 | 4_1:+17886230 | Msa0538510:CDS |
| TGCGAATCGCTGCTACAAGT+TGG | 0.533116 | 4_1:+17886554 | Msa0538510:CDS |
| TTCAGGGGTGAAAATGAAGA+TGG | 0.539909 | 4_1:+17882610 | Msa0538510:CDS |
| CAAATTGTATGCATGCAAGA+TGG | 0.544720 | 4_1:+17886318 | Msa0538510:CDS |
| CAACAGAAACTCTAAAAGAT+GGG | 0.546913 | 4_1:-17882252 | None:intergenic |
| ATAAGAATCAAGATGCATGA+TGG | 0.548029 | 4_1:+17887032 | Msa0538510:CDS |
| GGAGGAAGGCAACTCAATCT+GGG | 0.554824 | 4_1:+17886339 | Msa0538510:CDS |
| GGTTCGTTGGTTGTGATGAA+GGG | 0.559036 | 4_1:+17887182 | Msa0538510:CDS |
| TTTGTTTGGGAATCTCAACC+TGG | 0.562667 | 4_1:+17882283 | Msa0538510:CDS |
| AAACATGGTCTTTCCACAAG+AGG | 0.570271 | 4_1:-17886691 | None:intergenic |
| AGTTCAAACATTGATGCTTG+TGG | 0.570311 | 4_1:+17886480 | Msa0538510:CDS |
| ACCTATGAGTAAGAAGGATG+AGG | 0.571466 | 4_1:+17886132 | Msa0538510:CDS |
| AATCAAGATGCATGATGGAA+TGG | 0.572247 | 4_1:+17887037 | Msa0538510:CDS |
| TATTTCTCTTGGTATACTAG+AGG | 0.580152 | 4_1:+17887109 | Msa0538510:CDS |
| ATATGTGCCCAAATAGGAAG+TGG | 0.585023 | 4_1:+17886928 | Msa0538510:CDS |
| TCCACCATTTATACTTTGGT+AGG | 0.586796 | 4_1:-17886958 | None:intergenic |
| GCATTGTTGAAATGATAAGA+AGG | 0.591984 | 4_1:-17882358 | None:intergenic |
| GAAGGTGGAGGTGTAAGGGG+AGG | 0.592725 | 4_1:-17882340 | None:intergenic |
| TAGCAGTGGAAGAGAATACA+AGG | 0.594414 | 4_1:+17886582 | Msa0538510:CDS |
| AGCACATTGTCCAAATAAGA+GGG | 0.596846 | 4_1:+17886741 | Msa0538510:CDS |
| CTTGGTAAATGAAGAAGTAA+CGG | 0.606247 | 4_1:+17886222 | Msa0538510:CDS |
| AATTATCTCGGGGACGACCA+AGG | 0.607137 | 4_1:+17882546 | Msa0538510:CDS |
| AGAACGCAACATCTCTCTCA+AGG | 0.609793 | 4_1:-17886201 | None:intergenic |
| GAATACAAGGAACAAGCTCA+AGG | 0.613583 | 4_1:+17886595 | Msa0538510:CDS |
| CGATGACAAAGAAGATGATG+AGG | 0.616051 | 4_1:-17882482 | None:intergenic |
| ATTTGGGCACATATGGTGTG+AGG | 0.623984 | 4_1:-17886919 | None:intergenic |
| AGCTGACCACATTTAAAACA+TGG | 0.625475 | 4_1:-17886706 | None:intergenic |
| TATGCATGCAAGATGGAGGA+AGG | 0.626039 | 4_1:+17886325 | Msa0538510:CDS |
| TTGATGGCAATGAAAACGAA+GGG | 0.630243 | 4_1:-17882510 | None:intergenic |
| ACCTACCAAAGTATAAATGG+TGG | 0.632471 | 4_1:+17886957 | Msa0538510:CDS |
| ATTGATGGCAATGAAAACGA+AGG | 0.635141 | 4_1:-17882511 | None:intergenic |
| ATTGTATGCATGCAAGATGG+AGG | 0.640162 | 4_1:+17886321 | Msa0538510:CDS |
| TTAATGGGTAACAACCATGC+CGG | 0.642716 | 4_1:+17886987 | Msa0538510:CDS |
| CTCAAGGCATAAGATTATGG+CGG | 0.643964 | 4_1:-17886185 | None:intergenic |
| TTGTTGAAATGATAAGAAGG+TGG | 0.647192 | 4_1:-17882355 | None:intergenic |
| TTGAAATGATAAGAAGGTGG+AGG | 0.647831 | 4_1:-17882352 | None:intergenic |
| ATTCTTCCAAAATTATCTCG+GGG | 0.650660 | 4_1:+17882536 | Msa0538510:CDS |
| ACAAGTTGGATGTCTAGCAG+TGG | 0.651606 | 4_1:+17886568 | Msa0538510:CDS |
| ACCATGCCGGTAAAATTGAG+GGG | 0.661769 | 4_1:+17887000 | Msa0538510:CDS |
| AGGGATAAAGACTTCAGTGA+CGG | 0.665340 | 4_1:-17887208 | None:intergenic |
| GACTAGAACATCACTCGTAG+CGG | 0.682837 | 4_1:+17886525 | Msa0538510:CDS |
| GGTAAATGAAGAAGTAACGG+CGG | 0.723831 | 4_1:+17886225 | Msa0538510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTTTTTTTTTAAT+TGG | - | chr4_1:17885175-17885194 | None:intergenic | 0.0% |
| !! | AAACAAAAAAATAAAGTTTA+TGG | - | chr4_1:17883112-17883131 | None:intergenic | 10.0% |
| !!! | AATATTTGTTTTTTCATAAA+TGG | + | chr4_1:17884588-17884607 | Msa0538510:intron | 10.0% |
| !! | CACTAAATTAAAAAAATTTA+TGG | - | chr4_1:17884695-17884714 | None:intergenic | 10.0% |
| !!! | TATTTAATTTATACCTATAG+AGG | - | chr4_1:17883315-17883334 | None:intergenic | 15.0% |
| !! | TCTATAGGTATAAATTAAAT+AGG | + | chr4_1:17883314-17883333 | Msa0538510:intron | 15.0% |
| !! | ATCATAAATTTCATATACAA+AGG | + | chr4_1:17884905-17884924 | Msa0538510:intron | 15.0% |
| !!! | TTTTTTCTCATTCTTTTTGT+TGG | - | chr4_1:17882383-17882402 | None:intergenic | 20.0% |
| !!! | TTTTCTCAGTTAAACTTTAT+AGG | + | chr4_1:17882990-17883009 | Msa0538510:intron | 20.0% |
| !! | CTATTAAGAAACTTGAATTA+TGG | - | chr4_1:17883035-17883054 | None:intergenic | 20.0% |
| !! | GAGATTACTTATAAAAGTAA+TGG | + | chr4_1:17883244-17883263 | Msa0538510:intron | 20.0% |
| !!! | TACAAGAAAATCTAAAATTG+AGG | - | chr4_1:17883699-17883718 | None:intergenic | 20.0% |
| !! | GTGGTTGTATTTAATTAATT+TGG | - | chr4_1:17883732-17883751 | None:intergenic | 20.0% |
| !! | TCATTAGTTAATATGTAATG+CGG | + | chr4_1:17883954-17883973 | Msa0538510:intron | 20.0% |
| !!! | AATTTAATTGGTATTAGCTT+GGG | - | chr4_1:17884197-17884216 | None:intergenic | 20.0% |
| !! | TTTGGAAAATGAAATATATC+AGG | - | chr4_1:17884242-17884261 | None:intergenic | 20.0% |
| !! | TAGGAAAAATATTATCGAAT+AGG | + | chr4_1:17884307-17884326 | Msa0538510:intron | 20.0% |
| !!! | TATGTTGAAATAGATTTGTT+CGG | - | chr4_1:17884726-17884745 | None:intergenic | 20.0% |
| !! | AACAAATCTATTTCAACATA+GGG | + | chr4_1:17884726-17884745 | Msa0538510:intron | 20.0% |
| !! | TGAAATTTATGATTGCAATA+TGG | - | chr4_1:17884898-17884917 | None:intergenic | 20.0% |
| !! | AAATTTCATATACAAAGGAA+AGG | + | chr4_1:17884910-17884929 | Msa0538510:intron | 20.0% |
| !! | CATAATATTTCCAATAAAGT+AGG | + | chr4_1:17884973-17884992 | Msa0538510:intron | 20.0% |
| !! | ACAATGCATAATAATATGTA+AGG | + | chr4_1:17885330-17885349 | Msa0538510:intron | 20.0% |
| !!! | TTGACACGTTATTTTTTTTT+TGG | - | chr4_1:17885381-17885400 | None:intergenic | 20.0% |
| !!! | ATATTTGGTAATGCTAAATA+TGG | + | chr4_1:17885445-17885464 | Msa0538510:intron | 20.0% |
| !!! | ATATTTGGTAATGCTAAATA+TGG | + | chr4_1:17885445-17885464 | Msa0538510:intron | 20.0% |
| !!! | CAACTCTAAAATTTTAGAAT+TGG | - | chr4_1:17885934-17885953 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTTTCCAATACAA+TGG | + | chr4_1:17885964-17885983 | Msa0538510:intron | 20.0% |
| !! | TATGAAATCGAAAAATTCAA+TGG | + | chr4_1:17886019-17886038 | Msa0538510:intron | 20.0% |
| !!! | GAAAAAATGATTTTTCCTAT+TGG | + | chr4_1:17886041-17886060 | Msa0538510:intron | 20.0% |
| !! | TTAAATAATACCCTCTTATT+TGG | - | chr4_1:17886754-17886773 | None:intergenic | 20.0% |
| !! | TCTTTAGAGAATGTATGTTT+GGG | - | chr4_1:17882313-17882332 | None:intergenic | 25.0% |
| !! | AAAATCTTCCAAGTATCTTT+TGG | + | chr4_1:17882408-17882427 | Msa0538510:CDS | 25.0% |
| ! | TGTTTCAAAAACTAAACTTC+AGG | + | chr4_1:17882434-17882453 | Msa0538510:CDS | 25.0% |
| !!! | ATTTTGGAAGAATCTATTGA+TGG | - | chr4_1:17882529-17882548 | None:intergenic | 25.0% |
| ! | AGATTCTTCCAAAATTATCT+CGG | + | chr4_1:17882534-17882553 | Msa0538510:CDS | 25.0% |
| ! | AGAAGAAAATTCTTAAGCTA+TGG | + | chr4_1:17882574-17882593 | Msa0538510:CDS | 25.0% |
| !!! | TTCTGGTTTGGATAAAATTA+AGG | + | chr4_1:17882954-17882973 | Msa0538510:intron | 25.0% |
| !!! | AATAAAGTTTATGGCTTGTT+TGG | - | chr4_1:17883103-17883122 | None:intergenic | 25.0% |
| ! | AGGTATAAATTAAATAGGCT+AGG | + | chr4_1:17883319-17883338 | Msa0538510:intron | 25.0% |
| ! | CATAATAGCAAACAATAACA+AGG | + | chr4_1:17883361-17883380 | Msa0538510:intron | 25.0% |
| !! | TCAATGTGCACAATATTTTA+TGG | + | chr4_1:17883597-17883616 | Msa0538510:intron | 25.0% |
| ! | CGATGCAATAAATATATTAC+AGG | - | chr4_1:17883651-17883670 | None:intergenic | 25.0% |
| ! | TATTCTACTCAACATTATCA+TGG | - | chr4_1:17884014-17884033 | None:intergenic | 25.0% |
| ! | GTACTAAGTCAAACTAAAAA+TGG | + | chr4_1:17884037-17884056 | Msa0538510:intron | 25.0% |
| ! | GGTAAATATATCTTGTAAGT+TGG | + | chr4_1:17884058-17884077 | Msa0538510:intron | 25.0% |
| ! | CAATTTAATTGGTATTAGCT+TGG | - | chr4_1:17884198-17884217 | None:intergenic | 25.0% |
| ! | CAAGCTAATACCAATTAAAT+TGG | + | chr4_1:17884196-17884215 | Msa0538510:intron | 25.0% |
| ! | CAATGTTGAACCAATTTAAT+TGG | - | chr4_1:17884209-17884228 | None:intergenic | 25.0% |
| ! | AGGACAATTAATGAGTTATT+TGG | - | chr4_1:17884260-17884279 | None:intergenic | 25.0% |
| !! | GTTTTTCGCTGAAAAATTTA+TGG | - | chr4_1:17884491-17884510 | None:intergenic | 25.0% |
| !!! | TAAATTTTTCAGCGAAAAAC+AGG | + | chr4_1:17884491-17884510 | Msa0538510:intron | 25.0% |
| !!! | TTTTTTTAATTTAGTGCGCT+AGG | + | chr4_1:17884699-17884718 | Msa0538510:intron | 25.0% |
| !!! | TTTTTTAATTTAGTGCGCTA+GGG | + | chr4_1:17884700-17884719 | Msa0538510:intron | 25.0% |
| ! | GAACAAATCTATTTCAACAT+AGG | + | chr4_1:17884725-17884744 | Msa0538510:intron | 25.0% |
| ! | ACAAATCTATTTCAACATAG+GGG | + | chr4_1:17884727-17884746 | Msa0538510:intron | 25.0% |
| ! | CACTAAGTGTTCAATAAAAA+TGG | + | chr4_1:17884937-17884956 | Msa0538510:intron | 25.0% |
| ! | AAGAATAAGTCCTACTTTAT+TGG | - | chr4_1:17884986-17885005 | None:intergenic | 25.0% |
| !!! | TCCAGGTTTTTAATTTTATC+AGG | + | chr4_1:17885038-17885057 | Msa0538510:intron | 25.0% |
| !!! | CCAGGTTTTTAATTTTATCA+GGG | + | chr4_1:17885039-17885058 | Msa0538510:intron | 25.0% |
| !!! | CAGGTTTTTAATTTTATCAG+GGG | + | chr4_1:17885040-17885059 | Msa0538510:intron | 25.0% |
| ! | CATAATAATATGTAAGGTCT+GGG | + | chr4_1:17885336-17885355 | Msa0538510:intron | 25.0% |
| ! | ATAATAATATGTAAGGTCTG+GGG | + | chr4_1:17885337-17885356 | Msa0538510:intron | 25.0% |
| !!! | ATTTTTTTTTTGGTGATGGT+CGG | - | chr4_1:17885371-17885390 | None:intergenic | 25.0% |
| !!! | CGTTATTTTTTTTTTGGTGA+TGG | - | chr4_1:17885375-17885394 | None:intergenic | 25.0% |
| ! | AAATAACGTGTCAAAAATAC+CGG | + | chr4_1:17885387-17885406 | Msa0538510:intron | 25.0% |
| ! | CATACAAGCAAAATAATTTG+TGG | - | chr4_1:17885684-17885703 | None:intergenic | 25.0% |
| !! | AAAATGATTTTTCCTATTGG+TGG | + | chr4_1:17886044-17886063 | Msa0538510:intron | 25.0% |
| ! | TATTTCATAAAAGTTGCACA+AGG | + | chr4_1:17886087-17886106 | Msa0538510:intron | 25.0% |
| ! | AAGGATTCTTTGATACTAAA+GGG | + | chr4_1:17886614-17886633 | Msa0538510:CDS | 25.0% |
| !! | ATAAGATTTTTCCGCAAATT+TGG | - | chr4_1:17887092-17887111 | None:intergenic | 25.0% |
| ! | AAATGGTTGCAAAATTGTTA+TGG | + | chr4_1:17887133-17887152 | Msa0538510:CDS | 25.0% |
| ! | TGCAAAATTGTTATGGAAAA+TGG | + | chr4_1:17887140-17887159 | Msa0538510:CDS | 25.0% |
| !!! | GGAGTTTTAAAAATTGTATG+TGG | + | chr4_1:17887161-17887180 | Msa0538510:CDS | 25.0% |
| TTTCAGCAGATTACTTTCAA+AGG | + | chr4_1:17882213-17882232 | Msa0538510:CDS | 30.0% | |
| ! | CAACAGAAACTCTAAAAGAT+GGG | - | chr4_1:17882255-17882274 | None:intergenic | 30.0% |
| ! | GTCTTTAGAGAATGTATGTT+TGG | - | chr4_1:17882314-17882333 | None:intergenic | 30.0% |
| TTGTTGAAATGATAAGAAGG+TGG | - | chr4_1:17882358-17882377 | None:intergenic | 30.0% | |
| GCATTGTTGAAATGATAAGA+AGG | - | chr4_1:17882361-17882380 | None:intergenic | 30.0% | |
| AAACAATGCCAAAAGATACT+TGG | - | chr4_1:17882419-17882438 | None:intergenic | 30.0% | |
| TTCAAAAACTAAACTTCAGG+AGG | + | chr4_1:17882437-17882456 | Msa0538510:CDS | 30.0% | |
| GATTCTTCCAAAATTATCTC+GGG | + | chr4_1:17882535-17882554 | Msa0538510:CDS | 30.0% | |
| ATTCTTCCAAAATTATCTCG+GGG | + | chr4_1:17882536-17882555 | Msa0538510:CDS | 30.0% | |
| ! | GAATTTTCTTCTACTAACCT+TGG | - | chr4_1:17882566-17882585 | None:intergenic | 30.0% |
| !!! | ATGGATCTTCTTTTGATTTC+AGG | + | chr4_1:17882593-17882612 | Msa0538510:CDS | 30.0% |
| !!! | TGGATCTTCTTTTGATTTCA+GGG | + | chr4_1:17882594-17882613 | Msa0538510:CDS | 30.0% |
| !! | TCAATGTTGGTAATACTTTG+AGG | - | chr4_1:17882865-17882884 | None:intergenic | 30.0% |
| GTTTAACTGAGAAAAACTGT+AGG | - | chr4_1:17882985-17883004 | None:intergenic | 30.0% | |
| TTAGGCATCATGTTAAACAT+TGG | - | chr4_1:17883428-17883447 | None:intergenic | 30.0% | |
| !!! | AATGTTTTGGCAAACAACTT+AGG | - | chr4_1:17883446-17883465 | None:intergenic | 30.0% |
| ! | CTCAAACAGGTAAAATGTTT+TGG | - | chr4_1:17883459-17883478 | None:intergenic | 30.0% |
| GTTTGTGATATACTATACCA+TGG | - | chr4_1:17883562-17883581 | None:intergenic | 30.0% | |
| TGAGTAGAAACACATACAAT+GGG | - | chr4_1:17883822-17883841 | None:intergenic | 30.0% | |
| ATGAGTAGAAACACATACAA+TGG | - | chr4_1:17883823-17883842 | None:intergenic | 30.0% | |
| ! | AGATTCAGAACTGTTTTATC+AGG | + | chr4_1:17883899-17883918 | Msa0538510:intron | 30.0% |
| ! | GATTCAGAACTGTTTTATCA+GGG | + | chr4_1:17883900-17883919 | Msa0538510:intron | 30.0% |
| ! | TTGTAAGTTGGATGAACTTA+GGG | + | chr4_1:17884070-17884089 | Msa0538510:intron | 30.0% |
| ATGCTGCAAATATCACTTAT+AGG | + | chr4_1:17884288-17884307 | Msa0538510:intron | 30.0% | |
| GTTGCAATTACATTGCAAAA+TGG | + | chr4_1:17884348-17884367 | Msa0538510:intron | 30.0% | |
| AATTTATGGCTTAGTGTTAG+AGG | - | chr4_1:17884681-17884700 | None:intergenic | 30.0% | |
| !!! | TATAAAGGATTTTGAGGTCT+CGG | - | chr4_1:17884837-17884856 | None:intergenic | 30.0% |
| ! | CCACAATATAAAGGATTTTG+AGG | - | chr4_1:17884843-17884862 | None:intergenic | 30.0% |
| CCTCAAAATCCTTTATATTG+TGG | + | chr4_1:17884840-17884859 | Msa0538510:intron | 30.0% | |
| CAATTGTAGCCACAATATAA+AGG | - | chr4_1:17884852-17884871 | None:intergenic | 30.0% | |
| !!! | TGCAATATGGTTTTAAACAG+CGG | - | chr4_1:17884885-17884904 | None:intergenic | 30.0% |
| GTGTTCAATAAAAATGGCTA+TGG | + | chr4_1:17884943-17884962 | Msa0538510:intron | 30.0% | |
| ! | CATATATGCATGACTTTTGA+TGG | - | chr4_1:17885009-17885028 | None:intergenic | 30.0% |
| CATATATGAAAAACTTCTCC+AGG | + | chr4_1:17885021-17885040 | Msa0538510:intron | 30.0% | |
| CCCTGATAAAATTAAAAACC+TGG | - | chr4_1:17885042-17885061 | None:intergenic | 30.0% | |
| ATTGCAAATGAAAATCAGGT+TGG | - | chr4_1:17885089-17885108 | None:intergenic | 30.0% | |
| CTCTATTGCAAATGAAAATC+AGG | - | chr4_1:17885093-17885112 | None:intergenic | 30.0% | |
| GCATAATAATATGTAAGGTC+TGG | + | chr4_1:17885335-17885354 | Msa0538510:intron | 30.0% | |
| !!! | TTTTTTTTTTGGTGATGGTC+GGG | - | chr4_1:17885370-17885389 | None:intergenic | 30.0% |
| AATATTATTCCCACAGTTTC+CGG | - | chr4_1:17885430-17885449 | None:intergenic | 30.0% | |
| GAAACTGTGGGAATAATATT+TGG | + | chr4_1:17885430-17885449 | Msa0538510:intron | 30.0% | |
| ATGCAAAAGAAAGTTTACTC+CGG | + | chr4_1:17885483-17885502 | Msa0538510:intron | 30.0% | |
| AAGTTTACTCCGGTAAATTA+TGG | + | chr4_1:17885493-17885512 | Msa0538510:intron | 30.0% | |
| ATTACTCCTCCATAATTTAC+CGG | - | chr4_1:17885505-17885524 | None:intergenic | 30.0% | |
| GTAAATTATGGAGGAGTAAT+AGG | + | chr4_1:17885505-17885524 | Msa0538510:intron | 30.0% | |
| AAGGAATATAAGTGAGATGT+GGG | + | chr4_1:17885528-17885547 | Msa0538510:intron | 30.0% | |
| TGAGATGTGGGAATAATATT+TGG | + | chr4_1:17885540-17885559 | Msa0538510:intron | 30.0% | |
| ATGCAAAAGAAAGTTTACTC+CGG | + | chr4_1:17885483-17885502 | Msa0538510:intron | 30.0% | |
| AAGTTTACTCCGGTAAATTA+TGG | + | chr4_1:17885493-17885512 | Msa0538510:intron | 30.0% | |
| ATTACTCCTCCATAATTTAC+CGG | - | chr4_1:17885505-17885524 | None:intergenic | 30.0% | |
| GTAAATTATGGAGGAGTAAT+AGG | + | chr4_1:17885505-17885524 | Msa0538510:intron | 30.0% | |
| ACAAAAACCTATGAGTAAGA+AGG | + | chr4_1:17886126-17886145 | Msa0538510:CDS | 30.0% | |
| CTTGGTAAATGAAGAAGTAA+CGG | + | chr4_1:17886222-17886241 | Msa0538510:CDS | 30.0% | |
| ATTACGTCAACAAGTTTGAT+AGG | + | chr4_1:17886362-17886381 | Msa0538510:CDS | 30.0% | |
| TAGGATTATATCAGAGTTGA+AGG | + | chr4_1:17886381-17886400 | Msa0538510:CDS | 30.0% | |
| CAAGGATTCTTTGATACTAA+AGG | + | chr4_1:17886613-17886632 | Msa0538510:CDS | 30.0% | |
| AAAGGGATGACTAATGAAAA+AGG | + | chr4_1:17886631-17886650 | Msa0538510:CDS | 30.0% | |
| !! | GAAAGACCATGTTTTAAATG+TGG | + | chr4_1:17886700-17886719 | Msa0538510:CDS | 30.0% |
| TAGTAAACCACTTCCTATTT+GGG | - | chr4_1:17886938-17886957 | None:intergenic | 30.0% | |
| ACTACCTACCAAAGTATAAA+TGG | + | chr4_1:17886954-17886973 | Msa0538510:CDS | 30.0% | |
| !! | AAATGGTGGAACTGTTTTAA+TGG | + | chr4_1:17886971-17886990 | Msa0538510:CDS | 30.0% |
| !!! | AATGGTGGAACTGTTTTAAT+GGG | + | chr4_1:17886972-17886991 | Msa0538510:CDS | 30.0% |
| ATAAGAATCAAGATGCATGA+TGG | + | chr4_1:17887032-17887051 | Msa0538510:CDS | 30.0% | |
| ! | CGGAAAAATCTTATTTCTCT+TGG | + | chr4_1:17887098-17887117 | Msa0538510:CDS | 30.0% |
| TATTTCTCTTGGTATACTAG+AGG | + | chr4_1:17887109-17887128 | Msa0538510:CDS | 30.0% | |
| AAAAATTGTATGTGGTTCGT+TGG | + | chr4_1:17887169-17887188 | Msa0538510:CDS | 30.0% | |
| TCTAAAAGATGGGTGACAAT+TGG | - | chr4_1:17882245-17882264 | None:intergenic | 35.0% | |
| ! | GCAACAGAAACTCTAAAAGA+TGG | - | chr4_1:17882256-17882275 | None:intergenic | 35.0% |
| TGTTGCAGTTCCATTTGTTT+GGG | + | chr4_1:17882270-17882289 | Msa0538510:CDS | 35.0% | |
| TTGAAATGATAAGAAGGTGG+AGG | - | chr4_1:17882355-17882374 | None:intergenic | 35.0% | |
| ! | TTGATGGCAATGAAAACGAA+GGG | - | chr4_1:17882513-17882532 | None:intergenic | 35.0% |
| ! | ATTGATGGCAATGAAAACGA+AGG | - | chr4_1:17882514-17882533 | None:intergenic | 35.0% |
| !!! | GGATCTTCTTTTGATTTCAG+GGG | + | chr4_1:17882595-17882614 | Msa0538510:CDS | 35.0% |
| ! | AATACCTTCAATCTGAAGTG+TGG | - | chr4_1:17882758-17882777 | None:intergenic | 35.0% |
| TTGAATGTAACCACATGTGT+CGG | - | chr4_1:17882822-17882841 | None:intergenic | 35.0% | |
| ! | TGTCAAATGTTGCTTAGAGT+TGG | + | chr4_1:17882931-17882950 | Msa0538510:intron | 35.0% |
| TAGCTTAACTCATCCTCTAT+AGG | + | chr4_1:17883299-17883318 | Msa0538510:intron | 35.0% | |
| ! | ACCTGTTTGAGCTAATTTGT+CGG | + | chr4_1:17883468-17883487 | Msa0538510:intron | 35.0% |
| TCCATATGCACATGTAACTT+GGG | - | chr4_1:17883536-17883555 | None:intergenic | 35.0% | |
| TGTGATATACTATACCATGG+TGG | - | chr4_1:17883559-17883578 | None:intergenic | 35.0% | |
| GAGTAGAAACACATACAATG+GGG | - | chr4_1:17883821-17883840 | None:intergenic | 35.0% | |
| ! | CTTGTAAGTTGGATGAACTT+AGG | + | chr4_1:17884069-17884088 | Msa0538510:intron | 35.0% |
| ! | TGTAAGTTGGATGAACTTAG+GGG | + | chr4_1:17884071-17884090 | Msa0538510:intron | 35.0% |
| AAGTGATATTTGCAGCATTG+CGG | - | chr4_1:17884286-17884305 | None:intergenic | 35.0% | |
| !!! | TAGGTTTTAAATTGCAGTCG+CGG | + | chr4_1:17884326-17884345 | Msa0538510:intron | 35.0% |
| CCATTAAATTGACAGCTCTA+CGG | - | chr4_1:17884394-17884413 | None:intergenic | 35.0% | |
| GCTGTCAATTTAATGGAGTT+CGG | + | chr4_1:17884398-17884417 | Msa0538510:intron | 35.0% | |
| !! | ATTTTTCAGCGAAAAACAGG+TGG | + | chr4_1:17884494-17884513 | Msa0538510:intron | 35.0% |
| !!! | CTTGATGGAGGTTTTTTATG+AGG | + | chr4_1:17884766-17884785 | Msa0538510:intron | 35.0% |
| !!! | TTTTTTTTTGGTGATGGTCG+GGG | - | chr4_1:17885369-17885388 | None:intergenic | 35.0% |
| TCAAAAATACCGGAAACTGT+GGG | + | chr4_1:17885397-17885416 | Msa0538510:intron | 35.0% | |
| TTTACTCCGGTAAATTATGG+AGG | + | chr4_1:17885496-17885515 | Msa0538510:intron | 35.0% | |
| ATTATGGAGGAGTAATAGGA+AGG | + | chr4_1:17885509-17885528 | Msa0538510:intron | 35.0% | |
| GAAGGAATATAAGTGAGATG+TGG | + | chr4_1:17885527-17885546 | Msa0538510:intron | 35.0% | |
| TTTACTCCGGTAAATTATGG+AGG | + | chr4_1:17885496-17885515 | Msa0538510:intron | 35.0% | |
| ATTATGGAGGAGTAATAGGA+AGG | + | chr4_1:17885509-17885528 | Msa0538510:intron | 35.0% | |
| AGGAAGGATATATAAGTGAG+AGG | + | chr4_1:17885635-17885654 | Msa0538510:intron | 35.0% | |
| AAGTGAGAGGCTTATATTTG+TGG | + | chr4_1:17885648-17885667 | Msa0538510:intron | 35.0% | |
| ACATAGAGTGTAACAAAGTG+AGG | + | chr4_1:17885751-17885770 | Msa0538510:intron | 35.0% | |
| ACTAGTAGAAGCCATTGTAT+TGG | - | chr4_1:17885978-17885997 | None:intergenic | 35.0% | |
| AATACAATGGCTTCTACTAG+TGG | + | chr4_1:17885977-17885996 | Msa0538510:intron | 35.0% | |
| TCTCTCAAGGCATAAGATTA+TGG | - | chr4_1:17886191-17886210 | None:intergenic | 35.0% | |
| CATCTTGCATGCATACAATT+TGG | - | chr4_1:17886320-17886339 | None:intergenic | 35.0% | |
| CAAATTGTATGCATGCAAGA+TGG | + | chr4_1:17886318-17886337 | Msa0538510:CDS | 35.0% | |
| AAAGCAATAACATGAGTGCT+TGG | - | chr4_1:17886435-17886454 | None:intergenic | 35.0% | |
| ! | ACTAGATTTTCGTAAGACTC+TGG | - | chr4_1:17886463-17886482 | None:intergenic | 35.0% |
| AGTTCAAACATTGATGCTTG+TGG | + | chr4_1:17886480-17886499 | Msa0538510:CDS | 35.0% | |
| GTTCAAACATTGATGCTTGT+GGG | + | chr4_1:17886481-17886500 | Msa0538510:CDS | 35.0% | |
| ! | TGTGGGTGATACTCTAAAAA+TGG | + | chr4_1:17886498-17886517 | Msa0538510:CDS | 35.0% |
| ATCTAAATCTACACCTCTTG+TGG | + | chr4_1:17886678-17886697 | Msa0538510:CDS | 35.0% | |
| ! | AGCTGACCACATTTAAAACA+TGG | - | chr4_1:17886709-17886728 | None:intergenic | 35.0% |
| AAGCACATTGTCCAAATAAG+AGG | + | chr4_1:17886740-17886759 | Msa0538510:CDS | 35.0% | |
| AGCACATTGTCCAAATAAGA+GGG | + | chr4_1:17886741-17886760 | Msa0538510:CDS | 35.0% | |
| !! | CAAATCTTGTTGTTTGCCTT+TGG | - | chr4_1:17886802-17886821 | None:intergenic | 35.0% |
| GAGTTATGTCTCAAATGAAG+AGG | + | chr4_1:17886830-17886849 | Msa0538510:intron | 35.0% | |
| TCCACTTACCAAAAATGTTG+CGG | - | chr4_1:17886884-17886903 | None:intergenic | 35.0% | |
| GTAGTAAACCACTTCCTATT+TGG | - | chr4_1:17886939-17886958 | None:intergenic | 35.0% | |
| ACCTACCAAAGTATAAATGG+TGG | + | chr4_1:17886957-17886976 | Msa0538510:CDS | 35.0% | |
| TCCACCATTTATACTTTGGT+AGG | - | chr4_1:17886961-17886980 | None:intergenic | 35.0% | |
| CAGTTCCACCATTTATACTT+TGG | - | chr4_1:17886965-17886984 | None:intergenic | 35.0% | |
| ! | AATCAAGATGCATGATGGAA+TGG | + | chr4_1:17887037-17887056 | Msa0538510:CDS | 35.0% |
| TGAGACATGTTCCAAATTTG+CGG | + | chr4_1:17887078-17887097 | Msa0538510:CDS | 35.0% | |
| CTTGGTATACTAGAGGAAAA+TGG | + | chr4_1:17887116-17887135 | Msa0538510:CDS | 35.0% | |
| CTGTTGCAGTTCCATTTGTT+TGG | + | chr4_1:17882269-17882288 | Msa0538510:CDS | 40.0% | |
| GGTTGAGATTCCCAAACAAA+TGG | - | chr4_1:17882283-17882302 | None:intergenic | 40.0% | |
| TTTGTTTGGGAATCTCAACC+TGG | + | chr4_1:17882283-17882302 | Msa0538510:CDS | 40.0% | |
| AATGTATGTTTGGGAGTTCC+AGG | - | chr4_1:17882304-17882323 | None:intergenic | 40.0% | |
| ! | ATAAGAAGGTGGAGGTGTAA+GGG | - | chr4_1:17882347-17882366 | None:intergenic | 40.0% |
| CGATGACAAAGAAGATGATG+AGG | - | chr4_1:17882485-17882504 | None:intergenic | 40.0% | |
| TTCAGGGGTGAAAATGAAGA+TGG | + | chr4_1:17882610-17882629 | Msa0538510:CDS | 40.0% | |
| CCAAAGCACAAAGTAGAAGT+TGG | - | chr4_1:17882646-17882665 | None:intergenic | 40.0% | |
| CCAACTTCTACTTTGTGCTT+TGG | + | chr4_1:17882643-17882662 | Msa0538510:intron | 40.0% | |
| GCTTCCAAAGTAACTACAAG+AGG | + | chr4_1:17882695-17882714 | Msa0538510:intron | 40.0% | |
| ! | GTGTCGGTATTGTATGATGT+TGG | - | chr4_1:17882806-17882825 | None:intergenic | 40.0% |
| TCATACAATACCGACACATG+TGG | + | chr4_1:17882809-17882828 | Msa0538510:intron | 40.0% | |
| CAACATTGACGTTTCAGTGT+CGG | + | chr4_1:17882876-17882895 | Msa0538510:intron | 40.0% | |
| ! | ATGTTGCTTAGAGTTGGTTC+TGG | + | chr4_1:17882937-17882956 | Msa0538510:intron | 40.0% |
| TCCCAAGTTACATGTGCATA+TGG | + | chr4_1:17883532-17883551 | Msa0538510:intron | 40.0% | |
| GTCCATATGCACATGTAACT+TGG | - | chr4_1:17883537-17883556 | None:intergenic | 40.0% | |
| CTCTCGACTTTCAAGCTTAT+TGG | + | chr4_1:17883754-17883773 | Msa0538510:intron | 40.0% | |
| GAAGCTTAGCCCATCTAAAT+TGG | + | chr4_1:17884121-17884140 | Msa0538510:intron | 40.0% | |
| ! | TTGGTATTAGCTTGGGATCT+GGG | - | chr4_1:17884190-17884209 | None:intergenic | 40.0% |
| ! | ATTGGTATTAGCTTGGGATC+TGG | - | chr4_1:17884191-17884210 | None:intergenic | 40.0% |
| AGTGATATTTGCAGCATTGC+GGG | - | chr4_1:17884285-17884304 | None:intergenic | 40.0% | |
| CCGTAGAGCTGTCAATTTAA+TGG | + | chr4_1:17884391-17884410 | Msa0538510:intron | 40.0% | |
| AACATAGGGGCCAACATTAA+AGG | + | chr4_1:17884740-17884759 | Msa0538510:intron | 40.0% | |
| ACATAGGGGCCAACATTAAA+GGG | + | chr4_1:17884741-17884760 | Msa0538510:intron | 40.0% | |
| CATCAAGTCCCCTTTAATGT+TGG | - | chr4_1:17884753-17884772 | None:intergenic | 40.0% | |
| CAACATTAAAGGGGACTTGA+TGG | + | chr4_1:17884751-17884770 | Msa0538510:intron | 40.0% | |
| ! | TTATGAGGAGCTTTGTGCTT+TGG | + | chr4_1:17884781-17884800 | Msa0538510:intron | 40.0% |
| ! | TATGAGGAGCTTTGTGCTTT+GGG | + | chr4_1:17884782-17884801 | Msa0538510:intron | 40.0% |
| ! | TGTGGCTACAATTGCTGTTA+CGG | + | chr4_1:17884858-17884877 | Msa0538510:intron | 40.0% |
| ATGCAGCTATCTTATGCTTG+AGG | - | chr4_1:17885149-17885168 | None:intergenic | 40.0% | |
| CGTGACTCACAACTAGAATT+TGG | - | chr4_1:17885199-17885218 | None:intergenic | 40.0% | |
| GTCAAAAATACCGGAAACTG+TGG | + | chr4_1:17885396-17885415 | Msa0538510:intron | 40.0% | |
| GGTATTATTCCCACAGTTTC+CGG | - | chr4_1:17885409-17885428 | None:intergenic | 40.0% | |
| GGAAACTGTGGGAATAATAC+CGG | + | chr4_1:17885408-17885427 | Msa0538510:intron | 40.0% | |
| GGAATAATACCGGAAACTGT+GGG | + | chr4_1:17885418-17885437 | Msa0538510:intron | 40.0% | |
| !! | TTGGCTCTGATACCAATTGT+TGG | - | chr4_1:17885915-17885934 | None:intergenic | 40.0% |
| ! | TTCTACTAGTGGATCAGTCA+AGG | + | chr4_1:17885988-17886007 | Msa0538510:intron | 40.0% |
| TTTCATCTGCATCCACCAAT+AGG | - | chr4_1:17886059-17886078 | None:intergenic | 40.0% | |
| ! | AAAGTTGCACAAGGCATTAG+CGG | + | chr4_1:17886096-17886115 | Msa0538510:intron | 40.0% |
| ACCTATGAGTAAGAAGGATG+AGG | + | chr4_1:17886132-17886151 | Msa0538510:CDS | 40.0% | |
| TCCTCATCCTTCTTACTCAT+AGG | - | chr4_1:17886136-17886155 | None:intergenic | 40.0% | |
| TGAGTAAGAAGGATGAGGAT+TGG | + | chr4_1:17886137-17886156 | Msa0538510:CDS | 40.0% | |
| GAGTAAGAAGGATGAGGATT+GGG | + | chr4_1:17886138-17886157 | Msa0538510:CDS | 40.0% | |
| CTCAAGGCATAAGATTATGG+CGG | - | chr4_1:17886188-17886207 | None:intergenic | 40.0% | |
| GGTAAATGAAGAAGTAACGG+CGG | + | chr4_1:17886225-17886244 | Msa0538510:CDS | 40.0% | |
| ATTGTATGCATGCAAGATGG+AGG | + | chr4_1:17886321-17886340 | Msa0538510:CDS | 40.0% | |
| TAGCAGTGGAAGAGAATACA+AGG | + | chr4_1:17886582-17886601 | Msa0538510:CDS | 40.0% | |
| GAATACAAGGAACAAGCTCA+AGG | + | chr4_1:17886595-17886614 | Msa0538510:CDS | 40.0% | |
| AAACATGGTCTTTCCACAAG+AGG | - | chr4_1:17886694-17886713 | None:intergenic | 40.0% | |
| ! | TTTGGAGTTGTTGTCGTTGT+TGG | - | chr4_1:17886784-17886803 | None:intergenic | 40.0% |
| AACAACGACAACAACTCCAA+AGG | + | chr4_1:17886783-17886802 | Msa0538510:intron | 40.0% | |
| AGGCAAACAACAAGATTTGC+CGG | + | chr4_1:17886803-17886822 | Msa0538510:intron | 40.0% | |
| ! | CAGAAAGACCGCAACATTTT+TGG | + | chr4_1:17886873-17886892 | Msa0538510:intron | 40.0% |
| !!! | ACCGCAACATTTTTGGTAAG+TGG | + | chr4_1:17886880-17886899 | Msa0538510:CDS | 40.0% |
| TGGTAAGTGGATGCTTGATT+CGG | + | chr4_1:17886893-17886912 | Msa0538510:CDS | 40.0% | |
| ACTTCCTATTTGGGCACATA+TGG | - | chr4_1:17886929-17886948 | None:intergenic | 40.0% | |
| ATATGTGCCCAAATAGGAAG+TGG | + | chr4_1:17886928-17886947 | Msa0538510:CDS | 40.0% | |
| ! | TTAATGGGTAACAACCATGC+CGG | + | chr4_1:17886987-17887006 | Msa0538510:CDS | 40.0% |
| AACCATGCCGGTAAAATTGA+GGG | + | chr4_1:17886999-17887018 | Msa0538510:CDS | 40.0% | |
| ! | ACCATACCCCTCAATTTTAC+CGG | - | chr4_1:17887009-17887028 | None:intergenic | 40.0% |
| GGAACATGTCTCACATTCAT+CGG | - | chr4_1:17887071-17887090 | None:intergenic | 40.0% | |
| ! | TAAGAAGGTGGAGGTGTAAG+GGG | - | chr4_1:17882346-17882365 | None:intergenic | 45.0% |
| ! | GATAAGAAGGTGGAGGTGTA+AGG | - | chr4_1:17882348-17882367 | None:intergenic | 45.0% |
| CACGCCTCTTGTAGTTACTT+TGG | - | chr4_1:17882702-17882721 | None:intergenic | 45.0% | |
| GCATCCACACTTCAGATTGA+AGG | + | chr4_1:17882751-17882770 | Msa0538510:intron | 45.0% | |
| CGACACTGAAACGTCAATGT+TGG | - | chr4_1:17882878-17882897 | None:intergenic | 45.0% | |
| !! | GCTTAGAGTTGGTTCTGGTT+TGG | + | chr4_1:17882942-17882961 | Msa0538510:intron | 45.0% |
| GCCGACAAATTAGCTCAAAC+AGG | - | chr4_1:17883472-17883491 | None:intergenic | 45.0% | |
| ! | TTGAGCTAATTTGTCGGCAG+AGG | + | chr4_1:17883474-17883493 | Msa0538510:intron | 45.0% |
| AGCTTGAAAGTCGAGAGAAG+TGG | - | chr4_1:17883751-17883770 | None:intergenic | 45.0% | |
| ! | AACACATACAATGGGGCACT+TGG | - | chr4_1:17883814-17883833 | None:intergenic | 45.0% |
| TAGCCCATCTAAATTGGCAC+CGG | + | chr4_1:17884127-17884146 | Msa0538510:intron | 45.0% | |
| ! | TCTCCGGTGCCAATTTAGAT+GGG | - | chr4_1:17884133-17884152 | None:intergenic | 45.0% |
| ATCTCAGGTTCGATTCTCTC+CGG | - | chr4_1:17884149-17884168 | None:intergenic | 45.0% | |
| TCGAACCTGAGATCTCAAGT+AGG | + | chr4_1:17884156-17884175 | Msa0538510:intron | 45.0% | |
| ACGGCATAGTGGTTGCAATT+TGG | - | chr4_1:17884375-17884394 | None:intergenic | 45.0% | |
| TTTAATGGAGTTCGGAGCTC+CGG | + | chr4_1:17884406-17884425 | Msa0538510:intron | 45.0% | |
| TTTCAGCGAAAAACAGGTGG+TGG | + | chr4_1:17884497-17884516 | Msa0538510:intron | 45.0% | |
| TTCAGCGAAAAACAGGTGGT+GGG | + | chr4_1:17884498-17884517 | Msa0538510:intron | 45.0% | |
| ATCACAGCCATCAACACTAC+CGG | - | chr4_1:17884553-17884572 | None:intergenic | 45.0% | |
| GTGTTAGAGGCTACTGTTAG+AGG | - | chr4_1:17884668-17884687 | None:intergenic | 45.0% | |
| CATAGGGGCCAACATTAAAG+GGG | + | chr4_1:17884742-17884761 | Msa0538510:intron | 45.0% | |
| CATTAAAGGGGACTTGATGG+AGG | + | chr4_1:17884754-17884773 | Msa0538510:intron | 45.0% | |
| ! | ATGAGGAGCTTTGTGCTTTG+GGG | + | chr4_1:17884783-17884802 | Msa0538510:intron | 45.0% |
| GGGCTTAATTGACACCTCTA+GGG | + | chr4_1:17884803-17884822 | Msa0538510:intron | 45.0% | |
| GTTGGCATGTTCTGCATTTC+TGG | - | chr4_1:17885071-17885090 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | + | chr4_1:17885307-17885326 | Msa0538510:intron | 45.0% |
| GGGAATAATACCGGAAACTG+TGG | + | chr4_1:17885417-17885436 | Msa0538510:intron | 45.0% | |
| ! | ACTAGTGGATCAGTCAAGGT+CGG | + | chr4_1:17885992-17886011 | Msa0538510:intron | 45.0% |
| ! | AAGTTGCACAAGGCATTAGC+GGG | + | chr4_1:17886097-17886116 | Msa0538510:intron | 45.0% |
| AGAACGCAACATCTCTCTCA+AGG | - | chr4_1:17886204-17886223 | None:intergenic | 45.0% | |
| TGAGAGAGATGTTGCGTTCT+TGG | + | chr4_1:17886204-17886223 | Msa0538510:CDS | 45.0% | |
| TATGCATGCAAGATGGAGGA+AGG | + | chr4_1:17886325-17886344 | Msa0538510:CDS | 45.0% | |
| GACTAGAACATCACTCGTAG+CGG | + | chr4_1:17886525-17886544 | Msa0538510:CDS | 45.0% | |
| ! | ACAAGTTGGATGTCTAGCAG+TGG | + | chr4_1:17886568-17886587 | Msa0538510:CDS | 45.0% |
| CAAACAACAAGATTTGCCGG+AGG | + | chr4_1:17886806-17886825 | Msa0538510:intron | 45.0% | |
| ! | TTTGAGACATAACTCGCCTC+CGG | - | chr4_1:17886825-17886844 | None:intergenic | 45.0% |
| GGTAAGTGGATGCTTGATTC+GGG | + | chr4_1:17886894-17886913 | Msa0538510:CDS | 45.0% | |
| ATTTGGGCACATATGGTGTG+AGG | - | chr4_1:17886922-17886941 | None:intergenic | 45.0% | |
| CACACCATATGTGCCCAAAT+AGG | + | chr4_1:17886922-17886941 | Msa0538510:CDS | 45.0% | |
| CAACCATGCCGGTAAAATTG+AGG | + | chr4_1:17886998-17887017 | Msa0538510:CDS | 45.0% | |
| ACCATGCCGGTAAAATTGAG+GGG | + | chr4_1:17887000-17887019 | Msa0538510:CDS | 45.0% | |
| ! | TGGTTCGTTGGTTGTGATGA+AGG | + | chr4_1:17887181-17887200 | Msa0538510:CDS | 45.0% |
| ! | GGTTCGTTGGTTGTGATGAA+GGG | + | chr4_1:17887182-17887201 | Msa0538510:CDS | 45.0% |
| !! | AAAATAATAATTATAATTAG+TGG | + | chr4_1:17884633-17884652 | Msa0538510:intron | 5.0% |
| !! | AAATAATAATTATAATTAGT+GGG | + | chr4_1:17884634-17884653 | Msa0538510:intron | 5.0% |
| ! | GGTCGTCCCCGAGATAATTT+TGG | - | chr4_1:17882545-17882564 | None:intergenic | 50.0% |
| AATTATCTCGGGGACGACCA+AGG | + | chr4_1:17882546-17882565 | Msa0538510:CDS | 50.0% | |
| TTTGTCGGCAGAGGAGTTGA+TGG | + | chr4_1:17883483-17883502 | Msa0538510:intron | 50.0% | |
| CATGTGCATATGGACCACCA+TGG | + | chr4_1:17883542-17883561 | Msa0538510:intron | 50.0% | |
| TTATTGGATCCCCAGCAGTG+CGG | + | chr4_1:17883770-17883789 | Msa0538510:intron | 50.0% | |
| ! | CTCTCCGGTGCCAATTTAGA+TGG | - | chr4_1:17884134-17884153 | None:intergenic | 50.0% |
| GTGCTCCTACTTGAGATCTC+AGG | - | chr4_1:17884164-17884183 | None:intergenic | 50.0% | |
| TATTTGCAGCATTGCGGGTG+AGG | - | chr4_1:17884280-17884299 | None:intergenic | 50.0% | |
| TTGACAGCTCTACGGCATAG+TGG | - | chr4_1:17884386-17884405 | None:intergenic | 50.0% | |
| GACCTACATAACTCCACCAC+CGG | - | chr4_1:17884446-17884465 | None:intergenic | 50.0% | |
| GGTGGAGTTATGTAGGTCGA+CGG | + | chr4_1:17884448-17884467 | Msa0538510:intron | 50.0% | |
| GGCTACTGTTAGAGGCTTCA+AGG | - | chr4_1:17884660-17884679 | None:intergenic | 50.0% | |
| GGGGCTTAATTGACACCTCT+AGG | + | chr4_1:17884802-17884821 | Msa0538510:intron | 50.0% | |
| ACTCGTGAGCTTAGCTCAGT+TGG | + | chr4_1:17885302-17885321 | Msa0538510:intron | 50.0% | |
| ACCAATTGTTGGTGCAGCAG+CGG | - | chr4_1:17885904-17885923 | None:intergenic | 50.0% | |
| AATGAAGAAGTAACGGCGGC+TGG | + | chr4_1:17886229-17886248 | Msa0538510:CDS | 50.0% | |
| ATGAAGAAGTAACGGCGGCT+GGG | + | chr4_1:17886230-17886249 | Msa0538510:CDS | 50.0% | |
| TGGAGGAAGGCAACTCAATC+TGG | + | chr4_1:17886338-17886357 | Msa0538510:CDS | 50.0% | |
| GGAGGAAGGCAACTCAATCT+GGG | + | chr4_1:17886339-17886358 | Msa0538510:CDS | 50.0% | |
| TGCGAATCGCTGCTACAAGT+TGG | + | chr4_1:17886554-17886573 | Msa0538510:CDS | 50.0% | |
| ! | ACCCCTCAATTTTACCGGCA+TGG | - | chr4_1:17887004-17887023 | None:intergenic | 50.0% |
| GCCGGTAAAATTGAGGGGTA+TGG | + | chr4_1:17887005-17887024 | Msa0538510:CDS | 50.0% | |
| CGTTCGATCAGCTCGAACAG+TGG | + | chr4_1:17882673-17882692 | Msa0538510:intron | 55.0% | |
| ! | TGGGGCACTTGGATCCCTTA+CGG | - | chr4_1:17883803-17883822 | None:intergenic | 55.0% |
| !! | CTCCGGTGGTGGAGTTATGT+AGG | + | chr4_1:17884441-17884460 | Msa0538510:intron | 55.0% |
| GGAGTTATGTAGGTCGACGG+TGG | + | chr4_1:17884451-17884470 | Msa0538510:intron | 55.0% | |
| !! | AGCGAAAAACAGGTGGTGGG+CGG | + | chr4_1:17884501-17884520 | Msa0538510:intron | 55.0% |
| TCCGCTGCTGCACCAACAAT+TGG | + | chr4_1:17885900-17885919 | Msa0538510:intron | 55.0% | |
| TGAAGAAGTAACGGCGGCTG+GGG | + | chr4_1:17886231-17886250 | Msa0538510:CDS | 55.0% | |
| ! | GAAGGTGGAGGTGTAAGGGG+AGG | - | chr4_1:17882343-17882362 | None:intergenic | 60.0% |
| AGTGCGGTGCAGCACCGTAA+GGG | + | chr4_1:17883786-17883805 | Msa0538510:intron | 60.0% | |
| TGTAGGTCGACGGTGGTGCA+CGG | + | chr4_1:17884458-17884477 | Msa0538510:intron | 60.0% | |
| !! | GAAAAACAGGTGGTGGGCGG+TGG | + | chr4_1:17884504-17884523 | Msa0538510:intron | 60.0% |
| ! | CGGAGCTCCGGTAGTGTTGA+TGG | + | chr4_1:17884543-17884562 | Msa0538510:intron | 60.0% |
| !! | TTGACACCTCTAGGGTGCCG+CGG | + | chr4_1:17884811-17884830 | Msa0538510:intron | 60.0% |
| !!! | GGATTTTGAGGTCTCGGCCG+CGG | - | chr4_1:17884831-17884850 | None:intergenic | 60.0% |
| CAGTGCGGTGCAGCACCGTA+AGG | + | chr4_1:17883785-17883804 | Msa0538510:intron | 65.0% | |
| CTCCACCACCGGAGCTACGT+GGG | - | chr4_1:17884435-17884454 | None:intergenic | 65.0% | |
| ACTCCACCACCGGAGCTACG+TGG | - | chr4_1:17884436-17884455 | None:intergenic | 65.0% | |
| AGCTCCGACAGCCACCCTAC+CGG | - | chr4_1:17884530-17884549 | None:intergenic | 65.0% | |
| TAGGGTGGCTGTCGGAGCTC+CGG | + | chr4_1:17884531-17884550 | Msa0538510:intron | 65.0% | |
| AAGTAACGGCGGCTGGGGTG+TGG | + | chr4_1:17886236-17886255 | Msa0538510:CDS | 65.0% | |
| ! | GGTGCTGCACCGCACTGCTG+GGG | - | chr4_1:17883782-17883801 | None:intergenic | 70.0% |
| !! | CGGTGCTGCACCGCACTGCT+GGG | - | chr4_1:17883783-17883802 | None:intergenic | 70.0% |
| !! | ACGGTGCTGCACCGCACTGC+TGG | - | chr4_1:17883784-17883803 | None:intergenic | 70.0% |
| TCCGGCGACCCACGTAGCTC+CGG | + | chr4_1:17884424-17884443 | Msa0538510:intron | 70.0% | |
| ACCGGAGCTACGTGGGTCGC+CGG | - | chr4_1:17884428-17884447 | None:intergenic | 70.0% | |
| GACCCACGTAGCTCCGGTGG+TGG | + | chr4_1:17884430-17884449 | Msa0538510:intron | 70.0% | |
| AGGTCGACGGTGGTGCACGG+TGG | + | chr4_1:17884461-17884480 | Msa0538510:intron | 70.0% | |
| !! | AACAGGTGGTGGGCGGTGGC+CGG | + | chr4_1:17884508-17884527 | Msa0538510:intron | 70.0% |
| GTGGCCGGTAGGGTGGCTGT+CGG | + | chr4_1:17884523-17884542 | Msa0538510:intron | 70.0% | |
| GGCGACCCACGTAGCTCCGG+TGG | + | chr4_1:17884427-17884446 | Msa0538510:intron | 75.0% | |
| !! | GTGGTGGGCGGTGGCCGGTA+GGG | + | chr4_1:17884513-17884532 | Msa0538510:intron | 75.0% |
| TCTCGGCCGCGGCACCCTAG+AGG | - | chr4_1:17884820-17884839 | None:intergenic | 75.0% | |
| !!! | GGTGGTGGGCGGTGGCCGGT+AGG | + | chr4_1:17884512-17884531 | Msa0538510:intron | 80.0% |
| ! | GTGGGCGGTGGCCGGTAGGG+TGG | + | chr4_1:17884516-17884535 | Msa0538510:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 17882157 | 17887217 | 17882157 | ID=Msa0538510;Name=Msa0538510 |
| chr4_1 | mRNA | 17882157 | 17887217 | 17882157 | ID=Msa0538510-mRNA-1;Parent=Msa0538510;Name=Msa0538510-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|0.66|1|1|3|0|487 |
| chr4_1 | exon | 17882157 | 17882631 | 17882157 | ID=Msa0538510-mRNA-1:exon:5299;Parent=Msa0538510-mRNA-1 |
| chr4_1 | exon | 17886116 | 17886762 | 17886116 | ID=Msa0538510-mRNA-1:exon:5300;Parent=Msa0538510-mRNA-1 |
| chr4_1 | exon | 17886876 | 17887217 | 17886876 | ID=Msa0538510-mRNA-1:exon:5301;Parent=Msa0538510-mRNA-1 |
| chr4_1 | CDS | 17882157 | 17882631 | 17882157 | ID=Msa0538510-mRNA-1:cds;Parent=Msa0538510-mRNA-1 |
| chr4_1 | CDS | 17886116 | 17886762 | 17886116 | ID=Msa0538510-mRNA-1:cds;Parent=Msa0538510-mRNA-1 |
| chr4_1 | CDS | 17886876 | 17887217 | 17886876 | ID=Msa0538510-mRNA-1:cds;Parent=Msa0538510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
